Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00161.t1 | XP_003594749.2 | 94.5 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 2.80E-81 | 311.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00161.t1 | P87132 | 26.2 | 149 | 96 | 3 | 9 | 157 | 435 | 569 | 2.3e-07 | 57.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00161.t1 | A2Q2X4 | 94.5 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 2.0e-81 | 311.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene73234 | MS.gene00161 | PPI |
MS.gene048106 | MS.gene00161 | PPI |
MS.gene92557 | MS.gene00161 | PPI |
MS.gene037687 | MS.gene00161 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00161.t1 | MTR_2g034200 | 94.479 | 163 | 9 | 0 | 1 | 163 | 1 | 163 | 1.97e-107 | 303 |
MS.gene00161.t1 | MTR_5g077130 | 50.955 | 157 | 77 | 0 | 1 | 157 | 1 | 157 | 1.53e-54 | 170 |
MS.gene00161.t1 | MTR_4g019800 | 49.045 | 157 | 80 | 0 | 1 | 157 | 1 | 157 | 2.87e-53 | 166 |
MS.gene00161.t1 | MTR_5g077130 | 50.633 | 158 | 77 | 1 | 1 | 157 | 1 | 158 | 3.48e-53 | 166 |
MS.gene00161.t1 | MTR_4g064933 | 48.428 | 159 | 82 | 0 | 1 | 159 | 1 | 159 | 5.47e-53 | 166 |
MS.gene00161.t1 | MTR_7g065770 | 42.675 | 157 | 90 | 0 | 1 | 157 | 1 | 157 | 6.28e-43 | 140 |
MS.gene00161.t1 | MTR_1g054750 | 31.098 | 164 | 102 | 3 | 9 | 163 | 26 | 187 | 8.71e-20 | 82.0 |
MS.gene00161.t1 | MTR_1g087200 | 29.487 | 156 | 102 | 2 | 5 | 157 | 6 | 156 | 9.11e-19 | 78.6 |
MS.gene00161.t1 | MTR_1g083950 | 28.485 | 165 | 92 | 4 | 3 | 157 | 7 | 155 | 4.45e-18 | 77.0 |
MS.gene00161.t1 | MTR_1g054765 | 28.488 | 172 | 108 | 2 | 6 | 163 | 4 | 174 | 7.51e-18 | 76.6 |
MS.gene00161.t1 | MTR_2g089350 | 31.515 | 165 | 99 | 5 | 2 | 157 | 22 | 181 | 1.32e-17 | 77.0 |
MS.gene00161.t1 | MTR_5g065980 | 29.714 | 175 | 106 | 4 | 1 | 160 | 1 | 173 | 8.26e-16 | 71.2 |
MS.gene00161.t1 | MTR_5g065980 | 27.326 | 172 | 112 | 3 | 1 | 160 | 1 | 171 | 9.51e-16 | 70.9 |
MS.gene00161.t1 | MTR_1g088640 | 28.313 | 166 | 91 | 4 | 9 | 163 | 16 | 164 | 2.80e-15 | 69.3 |
MS.gene00161.t1 | MTR_1g088640 | 28.916 | 166 | 93 | 4 | 9 | 163 | 16 | 167 | 6.69e-15 | 68.6 |
MS.gene00161.t1 | MTR_1g088620 | 40.909 | 66 | 39 | 0 | 98 | 163 | 221 | 286 | 5.65e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00161.t1 | AT3G17020 | 57.595 | 158 | 66 | 1 | 2 | 158 | 4 | 161 | 2.13e-68 | 205 |
MS.gene00161.t1 | AT3G03270 | 51.572 | 159 | 77 | 0 | 1 | 159 | 1 | 159 | 1.03e-53 | 167 |
MS.gene00161.t1 | AT3G53990 | 46.497 | 157 | 84 | 0 | 1 | 157 | 1 | 157 | 2.05e-47 | 151 |
MS.gene00161.t1 | AT3G03270 | 48.889 | 135 | 69 | 0 | 1 | 135 | 1 | 135 | 1.04e-39 | 133 |
MS.gene00161.t1 | AT3G17020 | 47.170 | 106 | 55 | 1 | 2 | 106 | 4 | 109 | 3.74e-31 | 108 |
MS.gene00161.t1 | AT3G62550 | 31.515 | 165 | 98 | 4 | 5 | 163 | 7 | 162 | 6.40e-22 | 86.7 |
MS.gene00161.t1 | AT3G11930 | 31.325 | 166 | 95 | 5 | 5 | 157 | 33 | 192 | 6.27e-20 | 82.4 |
MS.gene00161.t1 | AT3G11930 | 31.138 | 167 | 95 | 5 | 5 | 157 | 33 | 193 | 8.70e-20 | 82.0 |
MS.gene00161.t1 | AT3G11930 | 30.952 | 168 | 95 | 5 | 5 | 157 | 33 | 194 | 1.14e-19 | 82.0 |
MS.gene00161.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene00161.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene00161.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene00161.t1 | AT1G11360 | 31.707 | 164 | 99 | 4 | 2 | 157 | 35 | 193 | 2.54e-19 | 82.0 |
MS.gene00161.t1 | AT1G68300 | 32.298 | 161 | 90 | 6 | 5 | 158 | 10 | 158 | 6.25e-19 | 79.0 |
MS.gene00161.t1 | AT1G09740 | 27.451 | 153 | 107 | 1 | 9 | 157 | 12 | 164 | 4.73e-18 | 77.0 |
MS.gene00161.t1 | AT1G09740 | 27.451 | 153 | 107 | 1 | 9 | 157 | 12 | 164 | 4.73e-18 | 77.0 |
MS.gene00161.t1 | AT3G53990 | 37.000 | 100 | 63 | 0 | 1 | 100 | 1 | 100 | 1.32e-17 | 74.7 |
MS.gene00161.t1 | AT3G58450 | 27.778 | 162 | 97 | 3 | 9 | 157 | 34 | 188 | 2.90e-15 | 70.5 |
MS.gene00161.t1 | AT3G58450 | 27.879 | 165 | 86 | 5 | 9 | 157 | 34 | 181 | 4.52e-15 | 69.7 |
MS.gene00161.t1 | AT3G11930 | 26.667 | 195 | 97 | 6 | 3 | 157 | 31 | 219 | 3.09e-14 | 68.2 |
MS.gene00161.t1 | AT2G47710 | 31.034 | 87 | 52 | 1 | 79 | 157 | 70 | 156 | 2.25e-11 | 59.3 |
Find 38 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCCATGCTCATACTCTTC+TGG | 0.183094 | 2.1:+58455823 | None:intergenic |
GGTCGTATATCTACCTTCTA+AGG | 0.222714 | 2.1:+58454681 | None:intergenic |
CCCCATGCTCATACTCTTCT+GGG | 0.343838 | 2.1:+58455824 | None:intergenic |
TTTCTCACCATGCAGCATTA+AGG | 0.344250 | 2.1:-58455911 | MS.gene00161:CDS |
GGTACTAGTAAAGGTCTATT+GGG | 0.365112 | 2.1:-58454786 | MS.gene00161:CDS |
ATGCAGCTGTGGGAAGTTAC+TGG | 0.380362 | 2.1:-58455799 | MS.gene00161:CDS |
TGGTACTAGTAAAGGTCTAT+TGG | 0.396771 | 2.1:-58454787 | MS.gene00161:CDS |
AATGGCAAGTGCAAGGAGAT+TGG | 0.413758 | 2.1:-58455947 | MS.gene00161:CDS |
GTTACTGTGGTGAAGACTTC+AGG | 0.414155 | 2.1:-58454203 | MS.gene00161:CDS |
GAGGCCTTGGCACCCTTAGA+AGG | 0.426886 | 2.1:-58454694 | MS.gene00161:intron |
GAAGTCTTCACCACAGTAAC+GGG | 0.436615 | 2.1:+58454206 | None:intergenic |
ATGGCAAGTGCAAGGAGATT+GGG | 0.442783 | 2.1:-58455946 | MS.gene00161:CDS |
TTTCTCTTCAGGGCGATAAT+GGG | 0.452562 | 2.1:-58454266 | MS.gene00161:intron |
TCATGCAGCTCTCACACCTC+TGG | 0.473488 | 2.1:-58455010 | MS.gene00161:intron |
ATAGGTTGTGGTACTAGTAA+AGG | 0.511414 | 2.1:-58454795 | MS.gene00161:intron |
ACCATGGGGAACAGAGGCCT+TGG | 0.532433 | 2.1:-58454707 | MS.gene00161:CDS |
GTCGTATATCTACCTTCTAA+GGG | 0.534274 | 2.1:+58454682 | None:intergenic |
CGCCCAGAAGAGTATGAGCA+TGG | 0.542531 | 2.1:-58455826 | MS.gene00161:CDS |
GTGGATAACATTGTGAAAGA+AGG | 0.548533 | 2.1:-58455874 | MS.gene00161:CDS |
GCCAAGGCCTCTGTTCCCCA+TGG | 0.562364 | 2.1:+58454706 | None:intergenic |
AAGGAGATTGGGCATAGCTA+TGG | 0.566367 | 2.1:-58455935 | MS.gene00161:CDS |
AACAATCAATGGCAAGTGCA+AGG | 0.567610 | 2.1:-58455954 | None:intergenic |
TGAAGTCTTCACCACAGTAA+CGG | 0.576543 | 2.1:+58454205 | None:intergenic |
GGCGAATGATAATAAGAATG+AGG | 0.581664 | 2.1:+58455845 | None:intergenic |
ACCTCTTGATAGTCTTACCA+TGG | 0.588148 | 2.1:-58454723 | MS.gene00161:CDS |
GCCCAGAAGAGTATGAGCAT+GGG | 0.597596 | 2.1:-58455825 | MS.gene00161:CDS |
CCTCTTGATAGTCTTACCAT+GGG | 0.602575 | 2.1:-58454722 | MS.gene00161:CDS |
TGCTTCTTGTCCCGTTACTG+TGG | 0.614193 | 2.1:-58454216 | MS.gene00161:CDS |
TCTACCTTCTAAGGGTGCCA+AGG | 0.614677 | 2.1:+58454690 | None:intergenic |
AGTCTTACCATGGGGAACAG+AGG | 0.630320 | 2.1:-58454713 | MS.gene00161:CDS |
CCCAGAAGAGTATGAGCATG+GGG | 0.641564 | 2.1:-58455824 | MS.gene00161:CDS |
AGCATGGGGAAATGCAGCTG+TGG | 0.642028 | 2.1:-58455810 | MS.gene00161:CDS |
TGAAAAGCCTTAATGCTGCA+TGG | 0.663454 | 2.1:+58455904 | None:intergenic |
GCATGGGGAAATGCAGCTGT+GGG | 0.667815 | 2.1:-58455809 | MS.gene00161:CDS |
GAGTTAGTGAACTCAGCCAG+AGG | 0.668338 | 2.1:+58454994 | None:intergenic |
GTACTAGTAAAGGTCTATTG+GGG | 0.686093 | 2.1:-58454785 | MS.gene00161:CDS |
CCCATGGTAAGACTATCAAG+AGG | 0.706078 | 2.1:+58454722 | None:intergenic |
CTCTTGATAGTCTTACCATG+GGG | 0.739880 | 2.1:-58454721 | MS.gene00161:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTCATATATTATTAATGT+AGG | - | chr2.1:58455285-58455304 | MS.gene00161:intron | 10.0% |
!! | TTAAAAATGACTAATAAAAA+GGG | + | chr2.1:58455486-58455505 | None:intergenic | 10.0% |
!! | AAACTACAATTCTATTTATT+TGG | - | chr2.1:58455085-58455104 | MS.gene00161:intron | 15.0% |
!! | AACTACAATTCTATTTATTT+GGG | - | chr2.1:58455086-58455105 | MS.gene00161:intron | 15.0% |
!! | CAAAGTAAGTATTATTAATA+AGG | - | chr2.1:58455642-58455661 | MS.gene00161:intron | 15.0% |
!! | CTTAAAAATGACTAATAAAA+AGG | + | chr2.1:58455487-58455506 | None:intergenic | 15.0% |
!! | TAAAAATGACTAATAAAAAG+GGG | + | chr2.1:58455485-58455504 | None:intergenic | 15.0% |
!!! | GATTATCTTACAAATTTTTT+GGG | - | chr2.1:58454444-58454463 | MS.gene00161:intron | 15.0% |
!!! | TGATTATCTTACAAATTTTT+TGG | - | chr2.1:58454443-58454462 | MS.gene00161:intron | 15.0% |
!!! | TTTTACAAATTATTAGACAT+AGG | - | chr2.1:58454392-58454411 | MS.gene00161:intron | 15.0% |
!! | CCAAAGTATATTTCAAATTA+GGG | - | chr2.1:58455699-58455718 | MS.gene00161:intron | 20.0% |
!! | TAGTTAAAATAAAATCTCAC+AGG | - | chr2.1:58455618-58455637 | MS.gene00161:intron | 20.0% |
!! | TCCAAAGTATATTTCAAATT+AGG | - | chr2.1:58455698-58455717 | MS.gene00161:intron | 20.0% |
!!! | AAAAGTATTATCAATTGAAG+TGG | - | chr2.1:58454415-58454434 | MS.gene00161:intron | 20.0% |
!!! | AACTATTCATTTTAATCTGA+AGG | - | chr2.1:58454835-58454854 | MS.gene00161:intron | 20.0% |
!!! | ATTGTAGCTTTTAAAATACA+TGG | + | chr2.1:58454936-58454955 | None:intergenic | 20.0% |
!!! | TTATCTTTTTTTTCTCTTCA+GGG | - | chr2.1:58455860-58455879 | MS.gene00161:CDS | 20.0% |
!!! | TTTATCTTTTTTTTCTCTTC+AGG | - | chr2.1:58455859-58455878 | MS.gene00161:CDS | 20.0% |
! | AAAAATGCAACTCTCAATTT+CGG | + | chr2.1:58455756-58455775 | None:intergenic | 25.0% |
! | ATAGAGATAAAACAAAAACG+AGG | - | chr2.1:58454753-58454772 | MS.gene00161:CDS | 25.0% |
! | GTATATTTCAAATTAGGGTA+AGG | - | chr2.1:58455704-58455723 | MS.gene00161:intron | 25.0% |
!! | CCCTAATTTGAAATATACTT+TGG | + | chr2.1:58455702-58455721 | None:intergenic | 25.0% |
!!! | TAGCAATTTTAAGTACTTCA+GGG | + | chr2.1:58455201-58455220 | None:intergenic | 25.0% |
AAAATGCAACTCTCAATTTC+GGG | + | chr2.1:58455755-58455774 | None:intergenic | 30.0% | |
ATAAAACAAAAACGAGGTAG+AGG | - | chr2.1:58454759-58454778 | MS.gene00161:CDS | 30.0% | |
TTGAATTGACCTAATGTTGT+TGG | - | chr2.1:58454965-58454984 | MS.gene00161:CDS | 30.0% | |
! | ATTTTGAATCATGCTCTTTG+AGG | - | chr2.1:58454470-58454489 | MS.gene00161:intron | 30.0% |
! | CTCAGTACTTTTCATTTACA+AGG | - | chr2.1:58454898-58454917 | MS.gene00161:intron | 30.0% |
! | GATTCTTTCTACGTCAATTT+TGG | - | chr2.1:58455033-58455052 | MS.gene00161:intron | 30.0% |
! | GTTTTCAAACCAACAACATT+AGG | + | chr2.1:58454977-58454996 | None:intergenic | 30.0% |
!! | AATTTTGACAAACACTAGCT+AGG | - | chr2.1:58454649-58454668 | MS.gene00161:intron | 30.0% |
!! | ATGTTGTTGGTTTGAAAACT+TGG | - | chr2.1:58454978-58454997 | MS.gene00161:CDS | 30.0% |
!! | GTAGCAATTTTAAGTACTTC+AGG | + | chr2.1:58455202-58455221 | None:intergenic | 30.0% |
!!! | AGTAACTTTGAGATTTTGTG+TGG | - | chr2.1:58455317-58455336 | MS.gene00161:intron | 30.0% |
!!! | TCTTACCTTTTTTTGCTCTA+TGG | + | chr2.1:58455230-58455249 | None:intergenic | 30.0% |
AAATGCAACTCTCAATTTCG+GGG | + | chr2.1:58455754-58455773 | None:intergenic | 35.0% | |
AACATTAGGTCAATTCAAGC+GGG | + | chr2.1:58454963-58454982 | None:intergenic | 35.0% | |
AACCACCATAGAGCAAAAAA+AGG | - | chr2.1:58455222-58455241 | MS.gene00161:intron | 35.0% | |
AATCCAAACACACATGAAGA+AGG | + | chr2.1:58454593-58454612 | None:intergenic | 35.0% | |
ATAGGTTGTGGTACTAGTAA+AGG | - | chr2.1:58455341-58455360 | MS.gene00161:intron | 35.0% | |
ATCCAAACACACATGAAGAA+GGG | + | chr2.1:58454592-58454611 | None:intergenic | 35.0% | |
CAACATTAGGTCAATTCAAG+CGG | + | chr2.1:58454964-58454983 | None:intergenic | 35.0% | |
CTATCGAGTGTCAACTTATA+TGG | + | chr2.1:58454513-58454532 | None:intergenic | 35.0% | |
GGCGAATGATAATAAGAATG+AGG | + | chr2.1:58454294-58454313 | None:intergenic | 35.0% | |
GGTACTAGTAAAGGTCTATT+GGG | - | chr2.1:58455350-58455369 | MS.gene00161:intron | 35.0% | |
GTACTAGTAAAGGTCTATTG+GGG | - | chr2.1:58455351-58455370 | MS.gene00161:intron | 35.0% | |
GTCGTATATCTACCTTCTAA+GGG | + | chr2.1:58455457-58455476 | None:intergenic | 35.0% | |
GTGGATAACATTGTGAAAGA+AGG | - | chr2.1:58454262-58454281 | MS.gene00161:intron | 35.0% | |
TGACTAATAAAAAGGGGCTA+AGG | + | chr2.1:58455479-58455498 | None:intergenic | 35.0% | |
TGGTACTAGTAAAGGTCTAT+TGG | - | chr2.1:58455349-58455368 | MS.gene00161:intron | 35.0% | |
! | TCTTTCTACGTCAATTTTGG+TGG | - | chr2.1:58455036-58455055 | MS.gene00161:intron | 35.0% |
!! | CGAATAGGATGAGTTTTGAT+TGG | - | chr2.1:58454789-58454808 | MS.gene00161:CDS | 35.0% |
!! | TACGTCAATTTTGGTGGTTT+AGG | - | chr2.1:58455042-58455061 | MS.gene00161:intron | 35.0% |
!! | TTTGAGATTTTGTGTGGCAT+AGG | - | chr2.1:58455323-58455342 | MS.gene00161:intron | 35.0% |
!!! | GAGAGAACACATTTTTTACG+TGG | + | chr2.1:58454547-58454566 | None:intergenic | 35.0% |
!!! | TACCTTTTTTTGCTCTATGG+TGG | + | chr2.1:58455227-58455246 | None:intergenic | 35.0% |
AATTTCGGGGTGGTAGATTT+AGG | + | chr2.1:58455741-58455760 | None:intergenic | 40.0% | |
ATTTCGGGGTGGTAGATTTA+GGG | + | chr2.1:58455740-58455759 | None:intergenic | 40.0% | |
GGTAGAGGTAACAAACGAAT+AGG | - | chr2.1:58454774-58454793 | MS.gene00161:CDS | 40.0% | |
GGTCGTATATCTACCTTCTA+AGG | + | chr2.1:58455458-58455477 | None:intergenic | 40.0% | |
TGAAAAGCCTTAATGCTGCA+TGG | + | chr2.1:58454235-58454254 | None:intergenic | 40.0% | |
TGAAGTCTTCACCACAGTAA+CGG | + | chr2.1:58455934-58455953 | None:intergenic | 40.0% | |
TTTCTCACCATGCAGCATTA+AGG | - | chr2.1:58454225-58454244 | MS.gene00161:CDS | 40.0% | |
TTTCTCTTCAGGGCGATAAT+GGG | - | chr2.1:58455870-58455889 | MS.gene00161:CDS | 40.0% | |
! | ACCTCTTGATAGTCTTACCA+TGG | - | chr2.1:58455413-58455432 | MS.gene00161:intron | 40.0% |
! | ATTTTGTGTGGCATAGGTTG+TGG | - | chr2.1:58455329-58455348 | MS.gene00161:intron | 40.0% |
! | CCTCTTGATAGTCTTACCAT+GGG | - | chr2.1:58455414-58455433 | MS.gene00161:intron | 40.0% |
! | CTCTTGATAGTCTTACCATG+GGG | - | chr2.1:58455415-58455434 | MS.gene00161:intron | 40.0% |
! | GCAGCATTAAGGCTTTTCAA+TGG | - | chr2.1:58454236-58454255 | MS.gene00161:CDS | 40.0% |
! | TAAGGCTTTTCAATGGACAG+TGG | - | chr2.1:58454243-58454262 | MS.gene00161:CDS | 40.0% |
! | TTTTCTCTTCAGGGCGATAA+TGG | - | chr2.1:58455869-58455888 | MS.gene00161:CDS | 40.0% |
AAGGAGATTGGGCATAGCTA+TGG | - | chr2.1:58454201-58454220 | MS.gene00161:CDS | 45.0% | |
ATGGCAAGTGCAAGGAGATT+GGG | - | chr2.1:58454190-58454209 | MS.gene00161:CDS | 45.0% | |
CCCATGGTAAGACTATCAAG+AGG | + | chr2.1:58455417-58455436 | None:intergenic | 45.0% | |
GAAGTCTTCACCACAGTAAC+GGG | + | chr2.1:58455933-58455952 | None:intergenic | 45.0% | |
GAGTGTGCTCTTCTTTATCG+AGG | - | chr2.1:58455000-58455019 | MS.gene00161:CDS | 45.0% | |
GTTACTGTGGTGAAGACTTC+AGG | - | chr2.1:58455933-58455952 | MS.gene00161:CDS | 45.0% | |
TGCCCTTCTTCATGTGTGTT+TGG | - | chr2.1:58454587-58454606 | MS.gene00161:intron | 45.0% | |
AGTCTTACCATGGGGAACAG+AGG | - | chr2.1:58455423-58455442 | MS.gene00161:intron | 50.0% | |
ATGCAGCTGTGGGAAGTTAC+TGG | - | chr2.1:58454337-58454356 | MS.gene00161:intron | 50.0% | |
CCCCATGCTCATACTCTTCT+GGG | + | chr2.1:58454315-58454334 | None:intergenic | 50.0% | |
GAGTTAGTGAACTCAGCCAG+AGG | + | chr2.1:58455145-58455164 | None:intergenic | 50.0% | |
TCCCCATGCTCATACTCTTC+TGG | + | chr2.1:58454316-58454335 | None:intergenic | 50.0% | |
TGCAACTCTCAATTTCGGGG+TGG | + | chr2.1:58455751-58455770 | None:intergenic | 50.0% | |
TGCTTCTTGTCCCGTTACTG+TGG | - | chr2.1:58455920-58455939 | MS.gene00161:CDS | 50.0% | |
! | CCCAGAAGAGTATGAGCATG+GGG | - | chr2.1:58454312-58454331 | MS.gene00161:intron | 50.0% |
! | GCCCAGAAGAGTATGAGCAT+GGG | - | chr2.1:58454311-58454330 | MS.gene00161:intron | 50.0% |
!! | TCTACCTTCTAAGGGTGCCA+AGG | + | chr2.1:58455449-58455468 | None:intergenic | 50.0% |
AGCATGGGGAAATGCAGCTG+TGG | - | chr2.1:58454326-58454345 | MS.gene00161:intron | 55.0% | |
GCATGGGGAAATGCAGCTGT+GGG | - | chr2.1:58454327-58454346 | MS.gene00161:intron | 55.0% | |
TCATGCAGCTCTCACACCTC+TGG | - | chr2.1:58455126-58455145 | MS.gene00161:intron | 55.0% | |
! | CGCCCAGAAGAGTATGAGCA+TGG | - | chr2.1:58454310-58454329 | MS.gene00161:intron | 55.0% |
ACCATGGGGAACAGAGGCCT+TGG | - | chr2.1:58455429-58455448 | MS.gene00161:intron | 60.0% | |
GAGGCCTTGGCACCCTTAGA+AGG | - | chr2.1:58455442-58455461 | MS.gene00161:intron | 60.0% | |
GCCAAGGCCTCTGTTCCCCA+TGG | + | chr2.1:58455433-58455452 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 58454190 | 58455968 | 58454190 | ID=MS.gene00161 |
chr2.1 | mRNA | 58454190 | 58455968 | 58454190 | ID=MS.gene00161.t1;Parent=MS.gene00161 |
chr2.1 | exon | 58455794 | 58455968 | 58455794 | ID=MS.gene00161.t1.exon1;Parent=MS.gene00161.t1 |
chr2.1 | CDS | 58455794 | 58455968 | 58455794 | ID=cds.MS.gene00161.t1;Parent=MS.gene00161.t1 |
chr2.1 | exon | 58454915 | 58455024 | 58454915 | ID=MS.gene00161.t1.exon2;Parent=MS.gene00161.t1 |
chr2.1 | CDS | 58454915 | 58455024 | 58454915 | ID=cds.MS.gene00161.t1;Parent=MS.gene00161.t1 |
chr2.1 | exon | 58454695 | 58454813 | 58454695 | ID=MS.gene00161.t1.exon3;Parent=MS.gene00161.t1 |
chr2.1 | CDS | 58454695 | 58454813 | 58454695 | ID=cds.MS.gene00161.t1;Parent=MS.gene00161.t1 |
chr2.1 | exon | 58454190 | 58454277 | 58454190 | ID=MS.gene00161.t1.exon4;Parent=MS.gene00161.t1 |
chr2.1 | CDS | 58454190 | 58454277 | 58454190 | ID=cds.MS.gene00161.t1;Parent=MS.gene00161.t1 |
Gene Sequence |
Protein sequence |