Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048106.t1 | XP_013454933.1 | 98.8 | 165 | 2 | 0 | 1 | 165 | 1 | 165 | 7.20E-85 | 323.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048106.t1 | Q8VYN9 | 31.1 | 161 | 94 | 5 | 7 | 157 | 50 | 203 | 2.2e-10 | 67.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048106.t1 | B7FGP5 | 98.8 | 165 | 2 | 0 | 1 | 165 | 1 | 165 | 5.2e-85 | 323.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048106 | MS.gene009525 | PPI |
| MS.gene048106 | MS.gene010109 | PPI |
| MS.gene048106 | MS.gene005525 | PPI |
| MS.gene048106 | MS.gene26154 | PPI |
| MS.gene048106 | MS.gene20731 | PPI |
| MS.gene048106 | MS.gene82881 | PPI |
| MS.gene048106 | MS.gene20848 | PPI |
| MS.gene048106 | MS.gene20798 | PPI |
| MS.gene048106 | MS.gene032573 | PPI |
| MS.gene048106 | MS.gene07213 | PPI |
| MS.gene048106 | MS.gene050004 | PPI |
| MS.gene048106 | MS.gene017358 | PPI |
| MS.gene048106 | MS.gene00161 | PPI |
| MS.gene048106 | MS.gene063633 | PPI |
| MS.gene070229 | MS.gene048106 | PPI |
| MS.gene048106 | MS.gene053006 | PPI |
| MS.gene048106 | MS.gene07276 | PPI |
| MS.gene048106 | MS.gene005602 | PPI |
| MS.gene048106 | MS.gene06986 | PPI |
| MS.gene048106 | MS.gene058230 | PPI |
| MS.gene048106 | MS.gene22971 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048106.t1 | MTR_4g019800 | 98.788 | 165 | 2 | 0 | 1 | 165 | 1 | 165 | 3.48e-119 | 333 |
| MS.gene048106.t1 | MTR_7g065770 | 70.701 | 157 | 46 | 0 | 1 | 157 | 1 | 157 | 2.47e-83 | 243 |
| MS.gene048106.t1 | MTR_4g064933 | 65.409 | 159 | 55 | 0 | 1 | 159 | 1 | 159 | 6.21e-75 | 221 |
| MS.gene048106.t1 | MTR_5g077130 | 55.758 | 165 | 73 | 0 | 1 | 165 | 1 | 165 | 7.09e-62 | 188 |
| MS.gene048106.t1 | MTR_5g077130 | 55.422 | 166 | 73 | 1 | 1 | 165 | 1 | 166 | 1.18e-60 | 185 |
| MS.gene048106.t1 | MTR_2g034200 | 47.500 | 160 | 84 | 0 | 1 | 160 | 1 | 160 | 1.72e-48 | 154 |
| MS.gene048106.t1 | MTR_5g065980 | 37.654 | 162 | 85 | 5 | 9 | 157 | 12 | 170 | 1.75e-21 | 86.3 |
| MS.gene048106.t1 | MTR_5g065980 | 37.037 | 162 | 84 | 5 | 9 | 157 | 12 | 168 | 6.07e-21 | 84.7 |
| MS.gene048106.t1 | MTR_1g087200 | 33.742 | 163 | 90 | 6 | 3 | 157 | 4 | 156 | 1.28e-17 | 75.5 |
| MS.gene048106.t1 | MTR_1g083950 | 32.716 | 162 | 99 | 4 | 5 | 164 | 9 | 162 | 8.53e-17 | 73.6 |
| MS.gene048106.t1 | MTR_1g054765 | 30.120 | 166 | 95 | 4 | 9 | 157 | 7 | 168 | 4.33e-15 | 69.3 |
| MS.gene048106.t1 | MTR_1g054750 | 29.375 | 160 | 98 | 3 | 9 | 157 | 26 | 181 | 2.69e-14 | 67.4 |
| MS.gene048106.t1 | MTR_1g088640 | 30.719 | 153 | 92 | 4 | 9 | 157 | 16 | 158 | 2.52e-13 | 64.3 |
| MS.gene048106.t1 | MTR_2g089350 | 26.994 | 163 | 109 | 4 | 2 | 157 | 22 | 181 | 2.40e-11 | 60.1 |
| MS.gene048106.t1 | MTR_6g038080 | 73.529 | 34 | 9 | 0 | 95 | 128 | 12 | 45 | 2.82e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048106.t1 | AT3G53990 | 75.472 | 159 | 39 | 0 | 1 | 159 | 1 | 159 | 2.33e-88 | 255 |
| MS.gene048106.t1 | AT3G03270 | 60.377 | 159 | 63 | 0 | 1 | 159 | 1 | 159 | 4.39e-63 | 191 |
| MS.gene048106.t1 | AT3G17020 | 50.000 | 154 | 76 | 1 | 5 | 157 | 7 | 160 | 1.07e-54 | 170 |
| MS.gene048106.t1 | AT3G53990 | 74.490 | 98 | 25 | 0 | 1 | 98 | 1 | 98 | 2.00e-47 | 150 |
| MS.gene048106.t1 | AT3G03270 | 57.037 | 135 | 58 | 0 | 1 | 135 | 1 | 135 | 7.32e-47 | 151 |
| MS.gene048106.t1 | AT3G17020 | 47.253 | 91 | 47 | 1 | 5 | 94 | 7 | 97 | 6.62e-25 | 93.2 |
| MS.gene048106.t1 | AT1G09740 | 32.530 | 166 | 96 | 3 | 9 | 164 | 12 | 171 | 4.08e-20 | 82.4 |
| MS.gene048106.t1 | AT1G09740 | 32.530 | 166 | 96 | 3 | 9 | 164 | 12 | 171 | 4.08e-20 | 82.4 |
| MS.gene048106.t1 | AT3G62550 | 33.939 | 165 | 92 | 4 | 3 | 160 | 5 | 159 | 1.54e-18 | 78.2 |
| MS.gene048106.t1 | AT3G58450 | 30.682 | 176 | 93 | 5 | 9 | 165 | 34 | 199 | 6.46e-18 | 77.4 |
| MS.gene048106.t1 | AT3G58450 | 30.233 | 172 | 92 | 5 | 9 | 165 | 34 | 192 | 2.02e-17 | 75.9 |
| MS.gene048106.t1 | AT1G68300 | 31.169 | 154 | 99 | 3 | 5 | 157 | 10 | 157 | 1.56e-15 | 70.1 |
| MS.gene048106.t1 | AT3G11930 | 30.247 | 162 | 95 | 3 | 9 | 157 | 37 | 193 | 2.27e-15 | 70.5 |
| MS.gene048106.t1 | AT3G11930 | 30.435 | 161 | 95 | 3 | 9 | 157 | 37 | 192 | 6.67e-15 | 69.3 |
| MS.gene048106.t1 | AT3G11930 | 30.061 | 163 | 95 | 3 | 9 | 157 | 37 | 194 | 9.73e-15 | 68.9 |
| MS.gene048106.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.15e-13 | 65.5 |
| MS.gene048106.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.15e-13 | 65.5 |
| MS.gene048106.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.15e-13 | 65.5 |
| MS.gene048106.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.15e-13 | 65.5 |
| MS.gene048106.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 4.68e-11 | 59.7 |
| MS.gene048106.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 4.68e-11 | 59.7 |
| MS.gene048106.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 4.78e-11 | 59.7 |
| MS.gene048106.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 4.78e-11 | 59.7 |
| MS.gene048106.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 5.40e-11 | 59.7 |
| MS.gene048106.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 5.40e-11 | 59.7 |
Find 34 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCATTCTTGCTGCTCT+TGG | 0.307367 | 4.4:-81460719 | None:intergenic |
| GAAGCTGGATTCTCTTGTTA+TGG | 0.310746 | 4.4:+81461630 | MS.gene048106:CDS |
| TGTCATGCACAGGATATTAC+TGG | 0.326014 | 4.4:+81462842 | MS.gene048106:intron |
| TATTGTTACAAAAGTGTATT+GGG | 0.331126 | 4.4:+81461567 | MS.gene048106:CDS |
| CTTGAGAATTTAGCTGATAA+AGG | 0.345536 | 4.4:+81460751 | MS.gene048106:CDS |
| AAGCTGGATTCTCTTGTTAT+GGG | 0.360643 | 4.4:+81461631 | MS.gene048106:CDS |
| GCAGCAAGAATGCTCTGAAA+TGG | 0.370068 | 4.4:+81460725 | MS.gene048106:CDS |
| ATTCTCTTGTTATGGGTAGC+AGG | 0.383547 | 4.4:+81461638 | MS.gene048106:CDS |
| CCATACTTCTTCATTATCTC+TGG | 0.389368 | 4.4:-81461389 | None:intergenic |
| ATGGCAAAAGATAGAACTAT+TGG | 0.392250 | 4.4:+81460679 | MS.gene048106:CDS |
| GTACTTACGAGAACCATCTT+TGG | 0.412789 | 4.4:-81460839 | None:intergenic |
| ATGAAGCTCGTAATCAGTTA+TGG | 0.420885 | 4.4:+81460815 | MS.gene048106:CDS |
| TTCTCTTGTTATGGGTAGCA+GGG | 0.424515 | 4.4:+81461639 | MS.gene048106:CDS |
| ATATTGTTACAAAAGTGTAT+TGG | 0.434652 | 4.4:+81461566 | MS.gene048106:CDS |
| CCAGAGATAATGAAGAAGTA+TGG | 0.442632 | 4.4:+81461389 | MS.gene048106:CDS |
| TGGTGTTCAGATTGATATTG+AGG | 0.444872 | 4.4:+81461409 | MS.gene048106:CDS |
| CAGCAAGAATGCTCTGAAAT+GGG | 0.466495 | 4.4:+81460726 | MS.gene048106:CDS |
| TGAAGCTCGTAATCAGTTAT+GGG | 0.466658 | 4.4:+81460816 | MS.gene048106:CDS |
| TGATGCAAGAGAGAAACTTA+TGG | 0.472999 | 4.4:+81461591 | MS.gene048106:CDS |
| TGCTGTTGAAGATCTGAAGC+TGG | 0.501707 | 4.4:+81461615 | MS.gene048106:CDS |
| AGTCACTGGGCAAGGAGCAT+TGG | 0.516295 | 4.4:-81462889 | None:intergenic |
| TTATCCTTGACAATAGTCAC+TGG | 0.518152 | 4.4:-81462903 | None:intergenic |
| GGTTCTCTGAACTCTTTCAA+AGG | 0.548832 | 4.4:-81461368 | None:intergenic |
| GGGGTCTCAGCACAATTCAA+AGG | 0.550843 | 4.4:+81461659 | MS.gene048106:CDS |
| TTGACAATAGTCACTGGGCA+AGG | 0.566118 | 4.4:-81462897 | None:intergenic |
| AATCAGTTATGGGCCAAAGA+TGG | 0.569005 | 4.4:+81460826 | MS.gene048106:CDS |
| CAAGAGAATCATGGCTGATG+TGG | 0.581024 | 4.4:-81460792 | None:intergenic |
| GAGCTTCATCAAGAGAATCA+TGG | 0.583756 | 4.4:-81460801 | None:intergenic |
| TCTCTTGTTATGGGTAGCAG+GGG | 0.589338 | 4.4:+81461640 | MS.gene048106:CDS |
| TTGCCCAGTGACTATTGTCA+AGG | 0.614312 | 4.4:+81462899 | MS.gene048106:CDS |
| GTCATGCACAGGATATTACT+GGG | 0.625731 | 4.4:+81462843 | MS.gene048106:intron |
| ATTGTTACAAAAGTGTATTG+GGG | 0.627971 | 4.4:+81461568 | MS.gene048106:CDS |
| TATCCTTGACAATAGTCACT+GGG | 0.636411 | 4.4:-81462902 | None:intergenic |
| AAAAGATAGAACTATTGGTG+TGG | 0.655375 | 4.4:+81460684 | MS.gene048106:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAATAATTATTGATTTTT+AGG | + | chr4.4:81461540-81461559 | MS.gene048106:intron | 10.0% |
| !! | AAAAAATGAAGAAAAATGAA+TGG | - | chr4.4:81460864-81460883 | None:intergenic | 15.0% |
| !! | TCAATCATATATTATTCTAA+AGG | + | chr4.4:81461752-81461771 | MS.gene048106:intron | 15.0% |
| !! | TGAATTAATAATGTATTCAT+AGG | - | chr4.4:81462797-81462816 | None:intergenic | 15.0% |
| !! | TTTGATTCATACATTTATAT+CGG | + | chr4.4:81461174-81461193 | MS.gene048106:intron | 15.0% |
| !!! | GATATTTGTAAAATTGATTT+TGG | - | chr4.4:81462583-81462602 | None:intergenic | 15.0% |
| !! | AAACACAAGATTAAGAAATT+AGG | - | chr4.4:81461704-81461723 | None:intergenic | 20.0% |
| !! | AACACAAGATTAAGAAATTA+GGG | - | chr4.4:81461703-81461722 | None:intergenic | 20.0% |
| !! | AATTCTATAAACTTAAGCTT+TGG | - | chr4.4:81461833-81461852 | None:intergenic | 20.0% |
| !! | ATTGAGATAAAATTGAGTTT+GGG | - | chr4.4:81462337-81462356 | None:intergenic | 20.0% |
| !! | TCAGGAAATAAATAAAACAT+AGG | - | chr4.4:81460905-81460924 | None:intergenic | 20.0% |
| !!! | AATCTTGTGTTTAATGTTTT+TGG | + | chr4.4:81461712-81461731 | MS.gene048106:intron | 20.0% |
| !!! | ACATGATATGATATTGATTT+TGG | + | chr4.4:81461274-81461293 | MS.gene048106:intron | 20.0% |
| !!! | ATATTGTTACAAAAGTGTAT+TGG | + | chr4.4:81461566-81461585 | MS.gene048106:CDS | 20.0% |
| !!! | ATCTTGTGTTTAATGTTTTT+GGG | + | chr4.4:81461713-81461732 | MS.gene048106:intron | 20.0% |
| !!! | GACTCTAATAATCTAAAATT+CGG | - | chr4.4:81460992-81461011 | None:intergenic | 20.0% |
| !!! | GATCAAACTTTATTTATCTT+TGG | + | chr4.4:81460965-81460984 | MS.gene048106:intron | 20.0% |
| !!! | TATGATATTGATTTTGGTTT+TGG | + | chr4.4:81461280-81461299 | MS.gene048106:intron | 20.0% |
| !!! | TATTGTTACAAAAGTGTATT+GGG | + | chr4.4:81461567-81461586 | MS.gene048106:CDS | 20.0% |
| !!! | TTTATAGCTTTACAAAATCA+GGG | + | chr4.4:81462031-81462050 | MS.gene048106:intron | 20.0% |
| ! | AAGTTATTGCTTGTTTGATT+TGG | + | chr4.4:81462152-81462171 | MS.gene048106:intron | 25.0% |
| ! | AGGAAATTAATTAGATCATG+TGG | + | chr4.4:81461772-81461791 | MS.gene048106:intron | 25.0% |
| ! | ATTAAGATCATGTAGTGAAA+GGG | - | chr4.4:81462774-81462793 | None:intergenic | 25.0% |
| ! | CATTGAGATAAAATTGAGTT+TGG | - | chr4.4:81462338-81462357 | None:intergenic | 25.0% |
| ! | GAAATTAATTAGATCATGTG+GGG | + | chr4.4:81461774-81461793 | MS.gene048106:intron | 25.0% |
| ! | GGAAATTAATTAGATCATGT+GGG | + | chr4.4:81461773-81461792 | MS.gene048106:intron | 25.0% |
| ! | TTGAGATAAAATTGAGTTTG+GGG | - | chr4.4:81462336-81462355 | None:intergenic | 25.0% |
| !! | ATTGTTACAAAAGTGTATTG+GGG | + | chr4.4:81461568-81461587 | MS.gene048106:CDS | 25.0% |
| !! | GTTTATAGCTTTACAAAATC+AGG | + | chr4.4:81462030-81462049 | MS.gene048106:intron | 25.0% |
| !!! | TTCTCAGATCAATGTTATTT+TGG | + | chr4.4:81462394-81462413 | MS.gene048106:intron | 25.0% |
| AAAAGATAGAACTATTGGTG+TGG | + | chr4.4:81460684-81460703 | MS.gene048106:CDS | 30.0% | |
| ATGGCAAAAGATAGAACTAT+TGG | + | chr4.4:81460679-81460698 | MS.gene048106:CDS | 30.0% | |
| CTTGAGAATTTAGCTGATAA+AGG | + | chr4.4:81460751-81460770 | MS.gene048106:CDS | 30.0% | |
| GATTAAGATCATGTAGTGAA+AGG | - | chr4.4:81462775-81462794 | None:intergenic | 30.0% | |
| TTAAAGAGAATTCAGTTCTG+CGG | - | chr4.4:81462631-81462650 | None:intergenic | 30.0% | |
| TTAAGATCATGTAGTGAAAG+GGG | - | chr4.4:81462773-81462792 | None:intergenic | 30.0% | |
| TTCATAAATTCACAGCAGAA+TGG | - | chr4.4:81462207-81462226 | None:intergenic | 30.0% | |
| ! | ACCAACGTAAATGTGATTTT+TGG | - | chr4.4:81462114-81462133 | None:intergenic | 30.0% |
| ! | AGTTTAGACAAGGATGTTTT+AGG | + | chr4.4:81461506-81461525 | MS.gene048106:intron | 30.0% |
| ! | CCAACGTAAATGTGATTTTT+GGG | - | chr4.4:81462113-81462132 | None:intergenic | 30.0% |
| ! | TTTTAGTGACACGATACAAT+TGG | + | chr4.4:81461887-81461906 | MS.gene048106:intron | 30.0% |
| !! | GATATTTATCTGAGTACTGA+AGG | + | chr4.4:81462734-81462753 | MS.gene048106:intron | 30.0% |
| !! | TTCGATTTTGATACGATATC+TGG | + | chr4.4:81461207-81461226 | MS.gene048106:intron | 30.0% |
| !!! | AATTAGACTGGATTTTGACT+CGG | + | chr4.4:81461020-81461039 | MS.gene048106:intron | 30.0% |
| !!! | CACTTTTTCAAGACAAAAAG+AGG | + | chr4.4:81461448-81461467 | MS.gene048106:CDS | 30.0% |
| !!! | TCTGCATTTTAGTTTAGACA+AGG | + | chr4.4:81461496-81461515 | MS.gene048106:intron | 30.0% |
| ACAACTGCGTTATAAAGTGT+TGG | + | chr4.4:81462459-81462478 | MS.gene048106:intron | 35.0% | |
| ACTATCCAAACATGTACGTT+TGG | + | chr4.4:81462079-81462098 | MS.gene048106:intron | 35.0% | |
| ACTTTGTTGGATTGAAAGTG+TGG | + | chr4.4:81462427-81462446 | MS.gene048106:intron | 35.0% | |
| ATAATCAAGAGAACATGCAC+TGG | - | chr4.4:81461248-81461267 | None:intergenic | 35.0% | |
| ATGAAGCTCGTAATCAGTTA+TGG | + | chr4.4:81460815-81460834 | MS.gene048106:CDS | 35.0% | |
| CCAGAGATAATGAAGAAGTA+TGG | + | chr4.4:81461389-81461408 | MS.gene048106:CDS | 35.0% | |
| CCATACTTCTTCATTATCTC+TGG | - | chr4.4:81461392-81461411 | None:intergenic | 35.0% | |
| CCCAAAAATCACATTTACGT+TGG | + | chr4.4:81462110-81462129 | MS.gene048106:intron | 35.0% | |
| TAAGATCATGTAGTGAAAGG+GGG | - | chr4.4:81462772-81462791 | None:intergenic | 35.0% | |
| TATCCTTGACAATAGTCACT+GGG | - | chr4.4:81462905-81462924 | None:intergenic | 35.0% | |
| TGAAGCTCGTAATCAGTTAT+GGG | + | chr4.4:81460816-81460835 | MS.gene048106:CDS | 35.0% | |
| TGATGCAAGAGAGAAACTTA+TGG | + | chr4.4:81461591-81461610 | MS.gene048106:CDS | 35.0% | |
| TGGTGTTCAGATTGATATTG+AGG | + | chr4.4:81461409-81461428 | MS.gene048106:CDS | 35.0% | |
| TTATCCTTGACAATAGTCAC+TGG | - | chr4.4:81462906-81462925 | None:intergenic | 35.0% | |
| ! | AAGCTGGATTCTCTTGTTAT+GGG | + | chr4.4:81461631-81461650 | MS.gene048106:CDS | 35.0% |
| ! | ATAGCTTTACAAAATCAGGG+TGG | + | chr4.4:81462034-81462053 | MS.gene048106:intron | 35.0% |
| ! | TGATTTTATGTCACTGCGAA+AGG | - | chr4.4:81462373-81462392 | None:intergenic | 35.0% |
| !! | ACGTAAATGTGATTTTTGGG+TGG | - | chr4.4:81462110-81462129 | None:intergenic | 35.0% |
| !! | CATATAGAAGAGCGTCTATT+AGG | + | chr4.4:81462685-81462704 | MS.gene048106:intron | 35.0% |
| !! | TTCTTTTTGTTGTCACTCTC+CGG | - | chr4.4:81461117-81461136 | None:intergenic | 35.0% |
| !!! | GTTTGTTTTGGAGTGTAAGT+TGG | + | chr4.4:81461796-81461815 | MS.gene048106:intron | 35.0% |
| !!! | TAAATGTGATTTTTGGGTGG+TGG | - | chr4.4:81462107-81462126 | None:intergenic | 35.0% |
| AATCAGTTATGGGCCAAAGA+TGG | + | chr4.4:81460826-81460845 | MS.gene048106:CDS | 40.0% | |
| AGACGCTCTTCTATATGCAT+CGG | - | chr4.4:81462682-81462701 | None:intergenic | 40.0% | |
| AGTCTCGAGTCTAATTAGAC+TGG | + | chr4.4:81461008-81461027 | MS.gene048106:intron | 40.0% | |
| ATCCTGTGCATGACAGAAAA+GGG | - | chr4.4:81462837-81462856 | None:intergenic | 40.0% | |
| CGAACACATGATATCAGATC+AGG | - | chr4.4:81460923-81460942 | None:intergenic | 40.0% | |
| CGGTGAGATTGACAAAATCA+CGG | + | chr4.4:81461941-81461960 | MS.gene048106:intron | 40.0% | |
| GAAGCTGGATTCTCTTGTTA+TGG | + | chr4.4:81461630-81461649 | MS.gene048106:CDS | 40.0% | |
| GAGCTTCATCAAGAGAATCA+TGG | - | chr4.4:81460804-81460823 | None:intergenic | 40.0% | |
| GCTAGAATCAATCATAGGAC+TGG | - | chr4.4:81462314-81462333 | None:intergenic | 40.0% | |
| GGTTCTCTGAACTCTTTCAA+AGG | - | chr4.4:81461371-81461390 | None:intergenic | 40.0% | |
| GTACTTACGAGAACCATCTT+TGG | - | chr4.4:81460842-81460861 | None:intergenic | 40.0% | |
| GTCATGCACAGGATATTACT+GGG | + | chr4.4:81462843-81462862 | MS.gene048106:intron | 40.0% | |
| GTCGCTCATGTTTGAATGAA+CGG | + | chr4.4:81461921-81461940 | MS.gene048106:intron | 40.0% | |
| GTTTGTTTCCACTGCAGAAT+GGG | - | chr4.4:81462268-81462287 | None:intergenic | 40.0% | |
| TATCCTGTGCATGACAGAAA+AGG | - | chr4.4:81462838-81462857 | None:intergenic | 40.0% | |
| TGGAACCAAACGTACATGTT+TGG | - | chr4.4:81462087-81462106 | None:intergenic | 40.0% | |
| TGGCAAAAGCTACACTTTGT+TGG | + | chr4.4:81461980-81461999 | MS.gene048106:intron | 40.0% | |
| TGTCATGCACAGGATATTAC+TGG | + | chr4.4:81462842-81462861 | MS.gene048106:intron | 40.0% | |
| TGTTTGTTTCCACTGCAGAA+TGG | - | chr4.4:81462269-81462288 | None:intergenic | 40.0% | |
| TTGGGGCTAGAATCAATCAT+AGG | - | chr4.4:81462319-81462338 | None:intergenic | 40.0% | |
| ! | ACATTTACGTTGGTGAAACG+TGG | + | chr4.4:81462120-81462139 | MS.gene048106:intron | 40.0% |
| ! | ATTCTCTTGTTATGGGTAGC+AGG | + | chr4.4:81461638-81461657 | MS.gene048106:CDS | 40.0% |
| ! | TTCTCTTGTTATGGGTAGCA+GGG | + | chr4.4:81461639-81461658 | MS.gene048106:CDS | 40.0% |
| ! | TTTATCTTTTGACCGAGCTC+TGG | + | chr4.4:81461065-81461084 | MS.gene048106:intron | 40.0% |
| !! | AGATCATGTGGGGTTTGTTT+TGG | + | chr4.4:81461784-81461803 | MS.gene048106:intron | 40.0% |
| !! | CAGCAAGAATGCTCTGAAAT+GGG | + | chr4.4:81460726-81460745 | MS.gene048106:CDS | 40.0% |
| !! | TGGATTGAAAGTGTGGCTTT+TGG | + | chr4.4:81462434-81462453 | MS.gene048106:intron | 40.0% |
| ACAATGATAGATGCGCGTCT+AGG | + | chr4.4:81462180-81462199 | MS.gene048106:intron | 45.0% | |
| CAAGAGAATCATGGCTGATG+TGG | - | chr4.4:81460795-81460814 | None:intergenic | 45.0% | |
| CACTGCAGAATGGGTATAAG+AGG | - | chr4.4:81462259-81462278 | None:intergenic | 45.0% | |
| CTCTTATACCCATTCTGCAG+TGG | + | chr4.4:81462257-81462276 | MS.gene048106:intron | 45.0% | |
| TCTCCGGTTCTTAGAGAAAC+CGG | - | chr4.4:81461101-81461120 | None:intergenic | 45.0% | |
| TTGACAATAGTCACTGGGCA+AGG | - | chr4.4:81462900-81462919 | None:intergenic | 45.0% | |
| TTGCCCAGTGACTATTGTCA+AGG | + | chr4.4:81462899-81462918 | MS.gene048106:CDS | 45.0% | |
| ! | TCTCTTGTTATGGGTAGCAG+GGG | + | chr4.4:81461640-81461659 | MS.gene048106:CDS | 45.0% |
| ! | TGCACTGGTAATCCAGAGTT+CGG | - | chr4.4:81461233-81461252 | None:intergenic | 45.0% |
| ! | TGCTGTTGAAGATCTGAAGC+TGG | + | chr4.4:81461615-81461634 | MS.gene048106:CDS | 45.0% |
| !! | GCAGCAAGAATGCTCTGAAA+TGG | + | chr4.4:81460725-81460744 | MS.gene048106:CDS | 45.0% |
| !!! | TTTAATTTATGTTTATTTTT+TGG | + | chr4.4:81461329-81461348 | MS.gene048106:intron | 5.0% |
| GGGGTCTCAGCACAATTCAA+AGG | + | chr4.4:81461659-81461678 | MS.gene048106:CDS | 50.0% | |
| GGTCCTGATAATCCAGAGCT+CGG | - | chr4.4:81461080-81461099 | None:intergenic | 50.0% | |
| TACGATATCTGGCCGAACTC+TGG | + | chr4.4:81461218-81461237 | MS.gene048106:intron | 50.0% | |
| ! | CACCCTTTTCTGTCATGCAC+AGG | + | chr4.4:81462832-81462851 | MS.gene048106:intron | 50.0% |
| ! | CAGAGCATTCTTGCTGCTCT+TGG | - | chr4.4:81460722-81460741 | None:intergenic | 50.0% |
| ! | GGACCGGTTTCTCTAAGAAC+CGG | + | chr4.4:81461095-81461114 | MS.gene048106:intron | 50.0% |
| !! | GAGCTCTGGATTATCAGGAC+CGG | + | chr4.4:81461079-81461098 | MS.gene048106:intron | 50.0% |
| !! | TGACCGAGCTCTGGATTATC+AGG | + | chr4.4:81461074-81461093 | MS.gene048106:intron | 50.0% |
| ! | ACGGCGAGTCAACGCGATTT+TGG | + | chr4.4:81461960-81461979 | MS.gene048106:intron | 55.0% |
| ! | AGTCACTGGGCAAGGAGCAT+TGG | - | chr4.4:81462892-81462911 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 81460679 | 81462947 | 81460679 | ID=MS.gene048106 |
| chr4.4 | mRNA | 81460679 | 81462947 | 81460679 | ID=MS.gene048106.t1;Parent=MS.gene048106 |
| chr4.4 | exon | 81460679 | 81460853 | 81460679 | ID=MS.gene048106.t1.exon1;Parent=MS.gene048106.t1 |
| chr4.4 | CDS | 81460679 | 81460853 | 81460679 | ID=cds.MS.gene048106.t1;Parent=MS.gene048106.t1 |
| chr4.4 | exon | 81461360 | 81461469 | 81461360 | ID=MS.gene048106.t1.exon2;Parent=MS.gene048106.t1 |
| chr4.4 | CDS | 81461360 | 81461469 | 81461360 | ID=cds.MS.gene048106.t1;Parent=MS.gene048106.t1 |
| chr4.4 | exon | 81461562 | 81461680 | 81461562 | ID=MS.gene048106.t1.exon3;Parent=MS.gene048106.t1 |
| chr4.4 | CDS | 81461562 | 81461680 | 81461562 | ID=cds.MS.gene048106.t1;Parent=MS.gene048106.t1 |
| chr4.4 | exon | 81462854 | 81462947 | 81462854 | ID=MS.gene048106.t1.exon4;Parent=MS.gene048106.t1 |
| chr4.4 | CDS | 81462854 | 81462947 | 81462854 | ID=cds.MS.gene048106.t1;Parent=MS.gene048106.t1 |
| Gene Sequence |
| Protein sequence |
