Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92557.t1 | XP_013454933.1 | 98.8 | 163 | 2 | 0 | 1 | 163 | 1 | 163 | 6.00E-84 | 320.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92557.t1 | Q8VYN9 | 31.1 | 161 | 94 | 5 | 7 | 157 | 50 | 203 | 2.2e-10 | 67.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92557.t1 | B7FGP5 | 98.8 | 163 | 2 | 0 | 1 | 163 | 1 | 163 | 4.4e-84 | 320.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene92557 | 0.83076 | 2.45E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene92557 | 0.860082 | 2.65E-63 | -1.69E-46 |
| MS.gene049653 | MS.gene92557 | 0.80608 | 9.78E-50 | -1.69E-46 |
| MS.gene049861 | MS.gene92557 | 0.805611 | 1.23E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene92557 | 0.860381 | 2.15E-63 | -1.69E-46 |
| MS.gene050288 | MS.gene92557 | 0.810361 | 1.20E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene92557 | 0.817978 | 2.49E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene92557 | 0.817698 | 2.88E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene92557 | 0.824504 | 7.79E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene92557 | 0.82019 | 7.82E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene92557 | 0.806294 | 8.82E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene92557 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene92557 | 0.817551 | 3.11E-52 | -1.69E-46 |
| MS.gene051245 | MS.gene92557 | 0.832143 | 1.12E-55 | -1.69E-46 |
| MS.gene051330 | MS.gene92557 | 0.806011 | 1.01E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene92557 | 0.82633 | 2.88E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene92557 | 0.807222 | 5.62E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene92557 | 0.818237 | 2.18E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene92557 | 0.825275 | 5.12E-54 | -1.69E-46 |
| MS.gene051746 | MS.gene92557 | 0.837607 | 4.70E-57 | -1.69E-46 |
| MS.gene051748 | MS.gene92557 | 0.854163 | 1.48E-61 | -1.69E-46 |
| MS.gene051756 | MS.gene92557 | 0.845749 | 3.34E-59 | -1.69E-46 |
| MS.gene051902 | MS.gene92557 | 0.8157 | 8.08E-52 | -1.69E-46 |
| MS.gene051903 | MS.gene92557 | 0.875185 | 3.76E-68 | -1.69E-46 |
| MS.gene051975 | MS.gene92557 | 0.821197 | 4.59E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene92557 | 0.801108 | 1.05E-48 | -1.69E-46 |
| MS.gene052527 | MS.gene92557 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene052818 | MS.gene92557 | -0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene92557 | 0.844769 | 6.16E-59 | -1.69E-46 |
| MS.gene053058 | MS.gene92557 | 0.804905 | 1.73E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene92557 | 0.81274 | 3.64E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene92557 | 0.853076 | 3.03E-61 | -1.69E-46 |
| MS.gene054403 | MS.gene92557 | 0.824446 | 8.04E-54 | -1.69E-46 |
| MS.gene054699 | MS.gene92557 | 0.817685 | 2.90E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene92557 | 0.823944 | 1.05E-53 | -1.69E-46 |
| MS.gene055051 | MS.gene92557 | 0.808834 | 2.55E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene92557 | 0.819991 | 8.68E-53 | -1.69E-46 |
| MS.gene055603 | MS.gene92557 | 0.829421 | 5.20E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene92557 | 0.800065 | 1.72E-48 | -1.69E-46 |
| MS.gene056631 | MS.gene92557 | 0.844845 | 5.87E-59 | -1.69E-46 |
| MS.gene056787 | MS.gene92557 | 0.807945 | 3.94E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene92557 | 0.843083 | 1.74E-58 | -1.69E-46 |
| MS.gene057079 | MS.gene92557 | 0.814438 | 1.54E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene92557 | 0.863477 | 2.42E-64 | -1.69E-46 |
| MS.gene057140 | MS.gene92557 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene92557 | 0.872385 | 3.31E-67 | -1.69E-46 |
| MS.gene057705 | MS.gene92557 | 0.825401 | 4.78E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene92557 | 0.820194 | 7.80E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene92557 | 0.876115 | 1.80E-68 | -1.69E-46 |
| MS.gene058054 | MS.gene92557 | 0.816376 | 5.71E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene92557 | 0.833028 | 6.75E-56 | -1.69E-46 |
| MS.gene058074 | MS.gene92557 | 0.851664 | 7.66E-61 | -1.69E-46 |
| MS.gene058238 | MS.gene92557 | 0.871484 | 6.60E-67 | -1.69E-46 |
| MS.gene058906 | MS.gene92557 | 0.824634 | 7.26E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene92557 | 0.825608 | 4.27E-54 | -1.69E-46 |
| MS.gene059360 | MS.gene92557 | 0.801609 | 8.31E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene92557 | 0.81247 | 4.17E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene92557 | 0.857844 | 1.24E-62 | -1.69E-46 |
| MS.gene06011 | MS.gene92557 | 0.845913 | 3.02E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene92557 | 0.803589 | 3.24E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene92557 | 0.81976 | 9.81E-53 | -1.69E-46 |
| MS.gene060763 | MS.gene92557 | 0.825899 | 3.64E-54 | -1.69E-46 |
| MS.gene060830 | MS.gene92557 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene06118 | MS.gene92557 | 0.806424 | 8.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92557 | MS.gene050004 | PPI |
| MS.gene22971 | MS.gene92557 | PPI |
| MS.gene92557 | MS.gene06986 | PPI |
| MS.gene92557 | MS.gene063633 | PPI |
| MS.gene07213 | MS.gene92557 | PPI |
| MS.gene26154 | MS.gene92557 | PPI |
| MS.gene92557 | MS.gene005602 | PPI |
| MS.gene92557 | MS.gene058230 | PPI |
| MS.gene92557 | MS.gene010109 | PPI |
| MS.gene20731 | MS.gene92557 | PPI |
| MS.gene92557 | MS.gene82881 | PPI |
| MS.gene20848 | MS.gene92557 | PPI |
| MS.gene070229 | MS.gene92557 | PPI |
| MS.gene92557 | MS.gene009525 | PPI |
| MS.gene032573 | MS.gene92557 | PPI |
| MS.gene92557 | MS.gene005525 | PPI |
| MS.gene92557 | MS.gene00161 | PPI |
| MS.gene07276 | MS.gene92557 | PPI |
| MS.gene017358 | MS.gene92557 | PPI |
| MS.gene053006 | MS.gene92557 | PPI |
| MS.gene20798 | MS.gene92557 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92557.t1 | MTR_4g019800 | 98.773 | 163 | 2 | 0 | 1 | 163 | 1 | 163 | 6.25e-118 | 330 |
| MS.gene92557.t1 | MTR_7g065770 | 70.701 | 157 | 46 | 0 | 1 | 157 | 1 | 157 | 2.67e-83 | 243 |
| MS.gene92557.t1 | MTR_4g064933 | 65.409 | 159 | 55 | 0 | 1 | 159 | 1 | 159 | 7.60e-75 | 221 |
| MS.gene92557.t1 | MTR_5g077130 | 56.173 | 162 | 71 | 0 | 1 | 162 | 1 | 162 | 4.29e-61 | 186 |
| MS.gene92557.t1 | MTR_5g077130 | 55.828 | 163 | 71 | 1 | 1 | 162 | 1 | 163 | 6.38e-60 | 183 |
| MS.gene92557.t1 | MTR_2g034200 | 47.500 | 160 | 84 | 0 | 1 | 160 | 1 | 160 | 1.85e-48 | 154 |
| MS.gene92557.t1 | MTR_5g065980 | 36.686 | 169 | 91 | 5 | 9 | 164 | 12 | 177 | 1.06e-21 | 86.7 |
| MS.gene92557.t1 | MTR_5g065980 | 36.095 | 169 | 90 | 5 | 9 | 164 | 12 | 175 | 3.93e-21 | 85.1 |
| MS.gene92557.t1 | MTR_1g087200 | 33.742 | 163 | 90 | 6 | 3 | 157 | 4 | 156 | 1.25e-17 | 75.5 |
| MS.gene92557.t1 | MTR_1g083950 | 32.919 | 161 | 98 | 4 | 5 | 163 | 9 | 161 | 8.13e-17 | 73.6 |
| MS.gene92557.t1 | MTR_1g054765 | 30.120 | 166 | 95 | 4 | 9 | 157 | 7 | 168 | 4.08e-15 | 69.3 |
| MS.gene92557.t1 | MTR_1g054750 | 29.375 | 160 | 98 | 3 | 9 | 157 | 26 | 181 | 3.04e-14 | 67.4 |
| MS.gene92557.t1 | MTR_1g088640 | 30.719 | 153 | 92 | 4 | 9 | 157 | 16 | 158 | 2.82e-13 | 64.3 |
| MS.gene92557.t1 | MTR_2g089350 | 26.994 | 163 | 109 | 4 | 2 | 157 | 22 | 181 | 2.23e-11 | 60.1 |
| MS.gene92557.t1 | MTR_6g038080 | 73.529 | 34 | 9 | 0 | 95 | 128 | 12 | 45 | 3.07e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92557.t1 | AT3G53990 | 75.472 | 159 | 39 | 0 | 1 | 159 | 1 | 159 | 2.34e-88 | 255 |
| MS.gene92557.t1 | AT3G03270 | 60.377 | 159 | 63 | 0 | 1 | 159 | 1 | 159 | 3.87e-63 | 191 |
| MS.gene92557.t1 | AT3G17020 | 50.000 | 154 | 76 | 1 | 5 | 157 | 7 | 160 | 8.78e-55 | 170 |
| MS.gene92557.t1 | AT3G53990 | 74.490 | 98 | 25 | 0 | 1 | 98 | 1 | 98 | 2.15e-47 | 150 |
| MS.gene92557.t1 | AT3G03270 | 57.037 | 135 | 58 | 0 | 1 | 135 | 1 | 135 | 7.61e-47 | 151 |
| MS.gene92557.t1 | AT3G17020 | 47.253 | 91 | 47 | 1 | 5 | 94 | 7 | 97 | 6.21e-25 | 93.2 |
| MS.gene92557.t1 | AT1G09740 | 32.727 | 165 | 95 | 3 | 9 | 163 | 12 | 170 | 5.28e-20 | 82.0 |
| MS.gene92557.t1 | AT1G09740 | 32.727 | 165 | 95 | 3 | 9 | 163 | 12 | 170 | 5.28e-20 | 82.0 |
| MS.gene92557.t1 | AT3G62550 | 33.939 | 165 | 92 | 4 | 3 | 160 | 5 | 159 | 1.44e-18 | 78.2 |
| MS.gene92557.t1 | AT3G58450 | 30.409 | 171 | 93 | 4 | 9 | 163 | 34 | 194 | 1.19e-17 | 76.6 |
| MS.gene92557.t1 | AT3G58450 | 29.940 | 167 | 92 | 4 | 9 | 163 | 34 | 187 | 3.81e-17 | 75.1 |
| MS.gene92557.t1 | AT1G68300 | 31.169 | 154 | 99 | 3 | 5 | 157 | 10 | 157 | 1.44e-15 | 70.1 |
| MS.gene92557.t1 | AT3G11930 | 30.247 | 162 | 95 | 3 | 9 | 157 | 37 | 193 | 2.21e-15 | 70.5 |
| MS.gene92557.t1 | AT3G11930 | 30.435 | 161 | 95 | 3 | 9 | 157 | 37 | 192 | 6.57e-15 | 69.3 |
| MS.gene92557.t1 | AT3G11930 | 30.061 | 163 | 95 | 3 | 9 | 157 | 37 | 194 | 8.81e-15 | 68.9 |
| MS.gene92557.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.43e-13 | 65.5 |
| MS.gene92557.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.43e-13 | 65.5 |
| MS.gene92557.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.43e-13 | 65.5 |
| MS.gene92557.t1 | AT1G11360 | 30.435 | 161 | 99 | 6 | 5 | 157 | 38 | 193 | 3.43e-13 | 65.5 |
| MS.gene92557.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 4.57e-11 | 59.7 |
| MS.gene92557.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 4.57e-11 | 59.7 |
| MS.gene92557.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 5.05e-11 | 59.7 |
| MS.gene92557.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 5.05e-11 | 59.7 |
| MS.gene92557.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 5.33e-11 | 59.7 |
| MS.gene92557.t1 | AT5G54430 | 31.333 | 150 | 86 | 5 | 5 | 144 | 48 | 190 | 5.33e-11 | 59.7 |
Find 35 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCATTCTTGCTGCTCT+TGG | 0.307367 | 4.2:-82436957 | None:intergenic |
| GAAGCTGGATTCTCTTGTTA+TGG | 0.310746 | 4.2:+82437874 | MS.gene92557:CDS |
| TATTGTTACAAAAGTGTATT+GGG | 0.331126 | 4.2:+82437811 | MS.gene92557:CDS |
| TAGAACAATTGGTGTGGCTT+TGG | 0.333421 | 4.2:+82436928 | MS.gene92557:CDS |
| CTTGAGAATTTAGCTGATAA+AGG | 0.345536 | 4.2:+82436989 | MS.gene92557:CDS |
| AAGCTGGATTCTCTTGTTAT+GGG | 0.360643 | 4.2:+82437875 | MS.gene92557:CDS |
| GCAGCAAGAATGCTCTGAAA+TGG | 0.370068 | 4.2:+82436963 | MS.gene92557:CDS |
| TCTCATGAACAGGATATTAC+TGG | 0.374010 | 4.2:+82439128 | MS.gene92557:intron |
| ATTCTCTTGTTATGGGTAGC+AGG | 0.383547 | 4.2:+82437882 | MS.gene92557:CDS |
| TGGCTTACGAGAACCATCTT+TGG | 0.385047 | 4.2:-82437077 | None:intergenic |
| CCATACTTCTTCATTATCTC+TGG | 0.389368 | 4.2:-82437641 | None:intergenic |
| ATGGCAAAAGATAGAACAAT+TGG | 0.405644 | 4.2:+82436917 | MS.gene92557:CDS |
| ATGAAGCTCGTAATCAGTTA+TGG | 0.420885 | 4.2:+82437053 | MS.gene92557:CDS |
| TTCTCTTGTTATGGGTAGCA+GGG | 0.424515 | 4.2:+82437883 | MS.gene92557:CDS |
| ATATTGTTACAAAAGTGTAT+TGG | 0.434652 | 4.2:+82437810 | MS.gene92557:CDS |
| CCAGAGATAATGAAGAAGTA+TGG | 0.442632 | 4.2:+82437641 | MS.gene92557:CDS |
| TGGTGTTCAGATTGATATTG+AGG | 0.444872 | 4.2:+82437661 | MS.gene92557:CDS |
| GTTCTCTGAATTCTTTCAAC+GGG | 0.450922 | 4.2:-82437619 | None:intergenic |
| CAGCAAGAATGCTCTGAAAT+GGG | 0.466495 | 4.2:+82436964 | MS.gene92557:CDS |
| TGAAGCTCGTAATCAGTTAT+GGG | 0.466658 | 4.2:+82437054 | MS.gene92557:CDS |
| TGATGCAAGAGAGAAACTTA+TGG | 0.472999 | 4.2:+82437835 | MS.gene92557:CDS |
| TGCTGTTGAAGATCTGAAGC+TGG | 0.501707 | 4.2:+82437859 | MS.gene92557:CDS |
| AGTCACAGGGCAAGGAGCAT+TGG | 0.516295 | 4.2:-82439175 | None:intergenic |
| GGTTCTCTGAATTCTTTCAA+CGG | 0.524355 | 4.2:-82437620 | None:intergenic |
| GGGGTCTCAGCACAATTCAA+AGG | 0.550843 | 4.2:+82437903 | MS.gene92557:CDS |
| CTCATGAACAGGATATTACT+GGG | 0.555261 | 4.2:+82439129 | MS.gene92557:intron |
| TTATCCTTGACAATAGTCAC+AGG | 0.556050 | 4.2:-82439189 | None:intergenic |
| TTGACAATAGTCACAGGGCA+AGG | 0.568600 | 4.2:-82439183 | None:intergenic |
| AATCAGTTATGGGCCAAAGA+TGG | 0.569005 | 4.2:+82437064 | MS.gene92557:CDS |
| TCTCTTGTTATGGGTAGCAG+GGG | 0.589338 | 4.2:+82437884 | MS.gene92557:CDS |
| TTGCCCTGTGACTATTGTCA+AGG | 0.603225 | 4.2:+82439185 | MS.gene92557:CDS |
| CAAGAGAATCATGACTGATG+TGG | 0.615035 | 4.2:-82437030 | None:intergenic |
| ATTGTTACAAAAGTGTATTG+GGG | 0.627971 | 4.2:+82437812 | MS.gene92557:CDS |
| AAAAGATAGAACAATTGGTG+TGG | 0.650098 | 4.2:+82436922 | MS.gene92557:CDS |
| TATCCTTGACAATAGTCACA+GGG | 0.720025 | 4.2:-82439188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAGAAAAATGAA+TGG | - | chr4.2:82437100-82437119 | None:intergenic | 10.0% |
| !! | ATGAATTAATCATTTATTAT+AGG | - | chr4.2:82439056-82439075 | None:intergenic | 10.0% |
| !!! | TGTAATAATTATTGATTTTT+AGG | + | chr4.2:82437784-82437803 | MS.gene92557:intron | 10.0% |
| !!! | GATATTTGTAAAATTGATTT+TGG | - | chr4.2:82438842-82438861 | None:intergenic | 15.0% |
| !! | AAAATTAATTAGATCATGTG+GGG | + | chr4.2:82438022-82438041 | MS.gene92557:intron | 20.0% |
| !! | AAACACAAGATTAGAAAATT+AGG | - | chr4.2:82437952-82437971 | None:intergenic | 20.0% |
| !! | AGAAAATTAATTAGATCATG+TGG | + | chr4.2:82438020-82438039 | MS.gene92557:intron | 20.0% |
| !! | ATTAAGATAGAATTGAGTTT+GGG | - | chr4.2:82438605-82438624 | None:intergenic | 20.0% |
| !! | ATTAAGGTTTCATAAATTCA+CGG | - | chr4.2:82438483-82438502 | None:intergenic | 20.0% |
| !! | ATTCAAAATCAATTTCATCA+CGG | + | chr4.2:82438867-82438886 | MS.gene92557:intron | 20.0% |
| !! | GAAAATTAATTAGATCATGT+GGG | + | chr4.2:82438021-82438040 | MS.gene92557:intron | 20.0% |
| !! | TCAAACTAACAATATAAGAT+CGG | - | chr4.2:82437166-82437185 | None:intergenic | 20.0% |
| !! | TTTGATTCATACCTTTATAT+CGG | + | chr4.2:82437426-82437445 | MS.gene92557:intron | 20.0% |
| !!! | AATCTTGTGTTTAATGTTTT+TGG | + | chr4.2:82437960-82437979 | MS.gene92557:intron | 20.0% |
| !!! | ATATTGTTACAAAAGTGTAT+TGG | + | chr4.2:82437810-82437829 | MS.gene92557:CDS | 20.0% |
| !!! | ATCTTGTGTTTAATGTTTTT+GGG | + | chr4.2:82437961-82437980 | MS.gene92557:intron | 20.0% |
| !!! | ATTTTAATCTTGTAGTGAAA+GGG | - | chr4.2:82439033-82439052 | None:intergenic | 20.0% |
| !!! | CATCAAAATATTTGTTGTAA+TGG | + | chr4.2:82439073-82439092 | MS.gene92557:intron | 20.0% |
| !!! | GACTCTAATAATCTAAAATT+CGG | - | chr4.2:82437245-82437264 | None:intergenic | 20.0% |
| !!! | GATCAAACTTTATTTATCTT+TGG | + | chr4.2:82437218-82437237 | MS.gene92557:intron | 20.0% |
| !!! | TATTGTTACAAAAGTGTATT+GGG | + | chr4.2:82437811-82437830 | MS.gene92557:CDS | 20.0% |
| !!! | TTCTCAAATCAATGTTATTT+TGG | + | chr4.2:82438662-82438681 | MS.gene92557:intron | 20.0% |
| ! | CATTAAGATAGAATTGAGTT+TGG | - | chr4.2:82438606-82438625 | None:intergenic | 25.0% |
| ! | TTAAGATAGAATTGAGTTTG+GGG | - | chr4.2:82438604-82438623 | None:intergenic | 25.0% |
| !! | ATTGTTACAAAAGTGTATTG+GGG | + | chr4.2:82437812-82437831 | MS.gene92557:CDS | 25.0% |
| !!! | GATTTTAATCTTGTAGTGAA+AGG | - | chr4.2:82439034-82439053 | None:intergenic | 25.0% |
| AAAAGATAGAACAATTGGTG+TGG | + | chr4.2:82436922-82436941 | MS.gene92557:CDS | 30.0% | |
| AAAATTTGAGTCTCATGAAC+AGG | + | chr4.2:82439118-82439137 | MS.gene92557:intron | 30.0% | |
| AAGAATCTAGTCCGATATAA+AGG | - | chr4.2:82437440-82437459 | None:intergenic | 30.0% | |
| AATCACAATAATAGCGTGTT+TGG | + | chr4.2:82438416-82438435 | MS.gene92557:intron | 30.0% | |
| AATTCTACAAACTTAAGCCT+TGG | - | chr4.2:82438081-82438100 | None:intergenic | 30.0% | |
| ATGGCAAAAGATAGAACAAT+TGG | + | chr4.2:82436917-82436936 | MS.gene92557:CDS | 30.0% | |
| CTTGAGAATTTAGCTGATAA+AGG | + | chr4.2:82436989-82437008 | MS.gene92557:CDS | 30.0% | |
| GCTAGAATCAATTATAGAAC+TGG | - | chr4.2:82438582-82438601 | None:intergenic | 30.0% | |
| TCAGTACTCATATAGATACT+AGG | - | chr4.2:82438993-82439012 | None:intergenic | 30.0% | |
| TGCACAAACAATGTGAATTT+GGG | - | chr4.2:82438372-82438391 | None:intergenic | 30.0% | |
| TTACAATGATAGTCGTGTAT+GGG | + | chr4.2:82438447-82438466 | MS.gene92557:intron | 30.0% | |
| TTGCACAAACAATGTGAATT+TGG | - | chr4.2:82438373-82438392 | None:intergenic | 30.0% | |
| TTTACAATGATAGTCGTGTA+TGG | + | chr4.2:82438446-82438465 | MS.gene92557:intron | 30.0% | |
| ! | AGTTTAGACAAGGATGTTTT+AGG | + | chr4.2:82437746-82437765 | MS.gene92557:intron | 30.0% |
| ! | ATTTGTAGCTTTACGAAATC+AGG | + | chr4.2:82438278-82438297 | MS.gene92557:intron | 30.0% |
| ! | TGATTTTATGTCACTGCAAA+AGG | - | chr4.2:82438641-82438660 | None:intergenic | 30.0% |
| ! | TTTGTAGCTTTACGAAATCA+GGG | + | chr4.2:82438279-82438298 | MS.gene92557:intron | 30.0% |
| !! | AGTATCTATATGAGTACTGA+AGG | + | chr4.2:82438993-82439012 | MS.gene92557:intron | 30.0% |
| !! | TTCGATTTTGATACGATATC+TGG | + | chr4.2:82437459-82437478 | MS.gene92557:intron | 30.0% |
| !!! | CACTTTTTCAAGACAAAAAG+AGG | + | chr4.2:82437700-82437719 | MS.gene92557:CDS | 30.0% |
| !!! | TCTGCATTTTAGTTTAGACA+AGG | + | chr4.2:82437736-82437755 | MS.gene92557:intron | 30.0% |
| AAAATTAAGGTGAGTCAGCA+CGG | + | chr4.2:82438202-82438221 | MS.gene92557:intron | 35.0% | |
| ACAGCAAGACCAAAATATCA+CGG | - | chr4.2:82438312-82438331 | None:intergenic | 35.0% | |
| AGTCTTGAGTCTAATTAGAC+TGG | + | chr4.2:82437261-82437280 | MS.gene92557:intron | 35.0% | |
| ATAATCAAGAGAACATGCAC+TGG | - | chr4.2:82437500-82437519 | None:intergenic | 35.0% | |
| ATGAAGCTCGTAATCAGTTA+TGG | + | chr4.2:82437053-82437072 | MS.gene92557:CDS | 35.0% | |
| CACGCTATTATTGTGATTTC+AGG | - | chr4.2:82438414-82438433 | None:intergenic | 35.0% | |
| CCAGAGATAATGAAGAAGTA+TGG | + | chr4.2:82437641-82437660 | MS.gene92557:CDS | 35.0% | |
| CCATACTTCTTCATTATCTC+TGG | - | chr4.2:82437644-82437663 | None:intergenic | 35.0% | |
| CGGTGAGATTGACAAAATTA+AGG | + | chr4.2:82438189-82438208 | MS.gene92557:intron | 35.0% | |
| CTACTAGAAGCTACGAATTA+AGG | - | chr4.2:82438499-82438518 | None:intergenic | 35.0% | |
| CTCATGAACAGGATATTACT+GGG | + | chr4.2:82439129-82439148 | MS.gene92557:intron | 35.0% | |
| GGTTCTCTGAATTCTTTCAA+CGG | - | chr4.2:82437623-82437642 | None:intergenic | 35.0% | |
| GTTCTCTGAATTCTTTCAAC+GGG | - | chr4.2:82437622-82437641 | None:intergenic | 35.0% | |
| TATCCTTGACAATAGTCACA+GGG | - | chr4.2:82439191-82439210 | None:intergenic | 35.0% | |
| TCATAAATTCACGGCAGAAA+TGG | - | chr4.2:82438474-82438493 | None:intergenic | 35.0% | |
| TCTCATGAACAGGATATTAC+TGG | + | chr4.2:82439128-82439147 | MS.gene92557:intron | 35.0% | |
| TGAAGCTCGTAATCAGTTAT+GGG | + | chr4.2:82437054-82437073 | MS.gene92557:CDS | 35.0% | |
| TGATGCAAGAGAGAAACTTA+TGG | + | chr4.2:82437835-82437854 | MS.gene92557:CDS | 35.0% | |
| TGGTGTTCAGATTGATATTG+AGG | + | chr4.2:82437661-82437680 | MS.gene92557:CDS | 35.0% | |
| TTATCCTTGACAATAGTCAC+AGG | - | chr4.2:82439192-82439211 | None:intergenic | 35.0% | |
| TTCACATTGTTTGTGCAATG+TGG | + | chr4.2:82438375-82438394 | MS.gene92557:intron | 35.0% | |
| ! | AAAAGCTACACTTTGTTGTG+TGG | + | chr4.2:82438686-82438705 | MS.gene92557:intron | 35.0% |
| ! | AAGCTGGATTCTCTTGTTAT+GGG | + | chr4.2:82437875-82437894 | MS.gene92557:CDS | 35.0% |
| ! | GTCGTTAAATCTGATGATGA+GGG | + | chr4.2:82438902-82438921 | MS.gene92557:intron | 35.0% |
| ! | TGTCGTTAAATCTGATGATG+AGG | + | chr4.2:82438901-82438920 | MS.gene92557:intron | 35.0% |
| !! | AGTTGGTGAGTTAAATACCA+AGG | + | chr4.2:82438061-82438080 | MS.gene92557:intron | 35.0% |
| !! | TTCTTTTTGTTGTCACTCTC+CGG | - | chr4.2:82437369-82437388 | None:intergenic | 35.0% |
| AATCAGTTATGGGCCAAAGA+TGG | + | chr4.2:82437064-82437083 | MS.gene92557:CDS | 40.0% | |
| ACAATGTGAATTTGGGTCTC+CGG | - | chr4.2:82438365-82438384 | None:intergenic | 40.0% | |
| ATACTCAAGTCGCTCATGTT+TGG | + | chr4.2:82438161-82438180 | MS.gene92557:intron | 40.0% | |
| CAAGAGAATCATGACTGATG+TGG | - | chr4.2:82437033-82437052 | None:intergenic | 40.0% | |
| GAAGCTGGATTCTCTTGTTA+TGG | + | chr4.2:82437874-82437893 | MS.gene92557:CDS | 40.0% | |
| GTTTGTTTCCACAGCAGAAT+GGG | - | chr4.2:82438536-82438555 | None:intergenic | 40.0% | |
| TAGAACAATTGGTGTGGCTT+TGG | + | chr4.2:82436928-82436947 | MS.gene92557:CDS | 40.0% | |
| TGTTTGTTTCCACAGCAGAA+TGG | - | chr4.2:82438537-82438556 | None:intergenic | 40.0% | |
| TTCATCCAGACATGCATGTT+TGG | + | chr4.2:82438331-82438350 | MS.gene92557:intron | 40.0% | |
| ! | ATTCTCTTGTTATGGGTAGC+AGG | + | chr4.2:82437882-82437901 | MS.gene92557:CDS | 40.0% |
| ! | TTCTCTTGTTATGGGTAGCA+GGG | + | chr4.2:82437883-82437902 | MS.gene92557:CDS | 40.0% |
| ! | TTTATCTTTTGACCGAGCTC+TGG | + | chr4.2:82437317-82437336 | MS.gene92557:intron | 40.0% |
| !! | ACACTTTGTTGTGTGGCTTT+TGG | + | chr4.2:82438693-82438712 | MS.gene92557:intron | 40.0% |
| !! | CAGATAGAAGAGCGTCTATT+AGG | + | chr4.2:82438944-82438963 | MS.gene92557:intron | 40.0% |
| !! | CAGCAAGAATGCTCTGAAAT+GGG | + | chr4.2:82436964-82436983 | MS.gene92557:CDS | 40.0% |
| AGACGCTCTTCTATCTGCAT+CGG | - | chr4.2:82438941-82438960 | None:intergenic | 45.0% | |
| ATATGACACCCATTCTGCTG+TGG | + | chr4.2:82438525-82438544 | MS.gene92557:intron | 45.0% | |
| TACGATATCTGGCCAAACTC+TGG | + | chr4.2:82437470-82437489 | MS.gene92557:intron | 45.0% | |
| TCTCCGGTTCTTAGAGAAAC+CGG | - | chr4.2:82437353-82437372 | None:intergenic | 45.0% | |
| TGGCTTACGAGAACCATCTT+TGG | - | chr4.2:82437080-82437099 | None:intergenic | 45.0% | |
| TTGACAATAGTCACAGGGCA+AGG | - | chr4.2:82439186-82439205 | None:intergenic | 45.0% | |
| TTGCCCTGTGACTATTGTCA+AGG | + | chr4.2:82439185-82439204 | MS.gene92557:CDS | 45.0% | |
| ! | AGATCATGTGGGGTTTGCTT+TGG | + | chr4.2:82438032-82438051 | MS.gene92557:intron | 45.0% |
| ! | ATCATGTGGGGTTTGCTTTG+GGG | + | chr4.2:82438034-82438053 | MS.gene92557:intron | 45.0% |
| ! | GATCATGTGGGGTTTGCTTT+GGG | + | chr4.2:82438033-82438052 | MS.gene92557:intron | 45.0% |
| ! | GTAGCTTTACGAAATCAGGG+TGG | + | chr4.2:82438282-82438301 | MS.gene92557:intron | 45.0% |
| ! | TCTCTTGTTATGGGTAGCAG+GGG | + | chr4.2:82437884-82437903 | MS.gene92557:CDS | 45.0% |
| ! | TGCACTGGTAATCCAGAGTT+TGG | - | chr4.2:82437485-82437504 | None:intergenic | 45.0% |
| ! | TGCTGTTGAAGATCTGAAGC+TGG | + | chr4.2:82437859-82437878 | MS.gene92557:CDS | 45.0% |
| !! | GCAGCAAGAATGCTCTGAAA+TGG | + | chr4.2:82436963-82436982 | MS.gene92557:CDS | 45.0% |
| !! | GTTTGCTTTGGGGTCTAAGT+TGG | + | chr4.2:82438044-82438063 | MS.gene92557:intron | 45.0% |
| ATGTGAATTTGGGTCTCCGG+CGG | - | chr4.2:82438362-82438381 | None:intergenic | 50.0% | |
| GGGGTCTCAGCACAATTCAA+AGG | + | chr4.2:82437903-82437922 | MS.gene92557:CDS | 50.0% | |
| GGTCCTGATAATCCAGAGCT+CGG | - | chr4.2:82437332-82437351 | None:intergenic | 50.0% | |
| GTCGCTCATGTTTGGATGAG+CGG | + | chr4.2:82438169-82438188 | MS.gene92557:intron | 50.0% | |
| TGGAGCCAAACATGCATGTC+TGG | - | chr4.2:82438339-82438358 | None:intergenic | 50.0% | |
| ! | AAGGTGAGTCAGCACGGTTT+TGG | + | chr4.2:82438208-82438227 | MS.gene92557:intron | 50.0% |
| ! | CAGAGCATTCTTGCTGCTCT+TGG | - | chr4.2:82436960-82436979 | None:intergenic | 50.0% |
| ! | GGACCGGTTTCTCTAAGAAC+CGG | + | chr4.2:82437347-82437366 | MS.gene92557:intron | 50.0% |
| ! | GGTGGCTCACCGTGATATTT+TGG | + | chr4.2:82438300-82438319 | MS.gene92557:intron | 50.0% |
| !! | GAGCTCTGGATTATCAGGAC+CGG | + | chr4.2:82437331-82437350 | MS.gene92557:intron | 50.0% |
| !! | TGACCGAGCTCTGGATTATC+AGG | + | chr4.2:82437326-82437345 | MS.gene92557:intron | 50.0% |
| ! | AGTCACAGGGCAAGGAGCAT+TGG | - | chr4.2:82439178-82439197 | None:intergenic | 55.0% |
| TGAATTTGGGTCTCCGGCGG+TGG | - | chr4.2:82438359-82438378 | None:intergenic | 60.0% | |
| ! | TGCATGTTTGGCTCCACCGC+CGG | + | chr4.2:82438343-82438362 | MS.gene92557:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 82436917 | 82439230 | 82436917 | ID=MS.gene92557 |
| chr4.2 | mRNA | 82436917 | 82439230 | 82436917 | ID=MS.gene92557.t1;Parent=MS.gene92557 |
| chr4.2 | exon | 82436917 | 82437091 | 82436917 | ID=MS.gene92557.t1.exon1;Parent=MS.gene92557.t1 |
| chr4.2 | CDS | 82436917 | 82437091 | 82436917 | ID=cds.MS.gene92557.t1;Parent=MS.gene92557.t1 |
| chr4.2 | exon | 82437612 | 82437721 | 82437612 | ID=MS.gene92557.t1.exon2;Parent=MS.gene92557.t1 |
| chr4.2 | CDS | 82437612 | 82437721 | 82437612 | ID=cds.MS.gene92557.t1;Parent=MS.gene92557.t1 |
| chr4.2 | exon | 82437806 | 82437924 | 82437806 | ID=MS.gene92557.t1.exon3;Parent=MS.gene92557.t1 |
| chr4.2 | CDS | 82437806 | 82437924 | 82437806 | ID=cds.MS.gene92557.t1;Parent=MS.gene92557.t1 |
| chr4.2 | exon | 82439140 | 82439230 | 82439140 | ID=MS.gene92557.t1.exon4;Parent=MS.gene92557.t1 |
| chr4.2 | CDS | 82439140 | 82439230 | 82439140 | ID=cds.MS.gene92557.t1;Parent=MS.gene92557.t1 |
| Gene Sequence |
| Protein sequence |
