Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037687.t1 | XP_013454933.1 | 82.4 | 165 | 2 | 1 | 1 | 138 | 1 | 165 | 9.00E-65 | 256.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037687.t1 | B7FGP5 | 82.4 | 165 | 2 | 1 | 1 | 138 | 1 | 165 | 6.5e-65 | 256.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058230 | MS.gene037687 | PPI |
| MS.gene005525 | MS.gene037687 | PPI |
| MS.gene22971 | MS.gene037687 | PPI |
| MS.gene037687 | MS.gene063633 | PPI |
| MS.gene053006 | MS.gene037687 | PPI |
| MS.gene005602 | MS.gene037687 | PPI |
| MS.gene037687 | MS.gene050004 | PPI |
| MS.gene07213 | MS.gene037687 | PPI |
| MS.gene06986 | MS.gene037687 | PPI |
| MS.gene20731 | MS.gene037687 | PPI |
| MS.gene037687 | MS.gene010109 | PPI |
| MS.gene26154 | MS.gene037687 | PPI |
| MS.gene20848 | MS.gene037687 | PPI |
| MS.gene037687 | MS.gene82881 | PPI |
| MS.gene07276 | MS.gene037687 | PPI |
| MS.gene070229 | MS.gene037687 | PPI |
| MS.gene009525 | MS.gene037687 | PPI |
| MS.gene017358 | MS.gene037687 | PPI |
| MS.gene032573 | MS.gene037687 | PPI |
| MS.gene037687 | MS.gene00161 | PPI |
| MS.gene20798 | MS.gene037687 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037687.t1 | MTR_4g019800 | 82.424 | 165 | 2 | 1 | 1 | 138 | 1 | 165 | 3.19e-91 | 261 |
| MS.gene037687.t1 | MTR_7g065770 | 66.400 | 125 | 42 | 0 | 1 | 125 | 1 | 125 | 3.60e-60 | 183 |
| MS.gene037687.t1 | MTR_4g064933 | 64.000 | 125 | 45 | 0 | 1 | 125 | 1 | 125 | 2.90e-55 | 171 |
| MS.gene037687.t1 | MTR_5g077130 | 52.800 | 125 | 59 | 0 | 1 | 125 | 1 | 125 | 2.03e-42 | 138 |
| MS.gene037687.t1 | MTR_5g077130 | 52.381 | 126 | 59 | 1 | 1 | 125 | 1 | 126 | 3.63e-41 | 135 |
| MS.gene037687.t1 | MTR_2g034200 | 44.800 | 125 | 69 | 0 | 1 | 125 | 1 | 125 | 5.86e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037687.t1 | AT3G53990 | 76.000 | 125 | 30 | 0 | 1 | 125 | 1 | 125 | 1.02e-66 | 199 |
| MS.gene037687.t1 | AT3G53990 | 74.490 | 98 | 25 | 0 | 1 | 98 | 1 | 98 | 2.64e-48 | 152 |
| MS.gene037687.t1 | AT3G03270 | 56.800 | 125 | 54 | 0 | 1 | 125 | 1 | 125 | 2.29e-43 | 140 |
| MS.gene037687.t1 | AT3G03270 | 56.800 | 125 | 54 | 0 | 1 | 125 | 1 | 125 | 4.46e-42 | 138 |
| MS.gene037687.t1 | AT3G17020 | 48.361 | 122 | 62 | 1 | 5 | 125 | 7 | 128 | 5.20e-39 | 129 |
| MS.gene037687.t1 | AT3G17020 | 47.253 | 91 | 47 | 1 | 5 | 94 | 7 | 97 | 2.58e-25 | 93.2 |
Find 22 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCATTCTTGCTGCTCT+TGG | 0.307367 | 4.3:-78973198 | None:intergenic |
| GAAGCTGGATTCTCTTGTTA+TGG | 0.310746 | 4.3:+78975438 | MS.gene037687:CDS |
| TATTGTTACAAAAGTGTATT+GGG | 0.331126 | 4.3:+78975375 | MS.gene037687:CDS |
| TAGAACAATTGGTGTGGCTT+TGG | 0.333421 | 4.3:+78973169 | MS.gene037687:CDS |
| CTTGAGAATTTAGCTGATAA+AGG | 0.345536 | 4.3:+78973230 | MS.gene037687:CDS |
| AAGCTGGATTCTCTTGTTAT+GGG | 0.360643 | 4.3:+78975439 | MS.gene037687:CDS |
| GCAGCAAGAATGCTCTGAAA+TGG | 0.370068 | 4.3:+78973204 | MS.gene037687:CDS |
| ATGGCAAAAGATAGAACAAT+TGG | 0.405644 | 4.3:+78973158 | MS.gene037687:CDS |
| GTACTTACGAGAACCATCTT+TGG | 0.412789 | 4.3:-78973318 | None:intergenic |
| ATGAAGCTCGTAATCAGTTA+TGG | 0.420885 | 4.3:+78973294 | MS.gene037687:CDS |
| ATATTGTTACAAAAGTGTAT+TGG | 0.434652 | 4.3:+78975374 | MS.gene037687:CDS |
| TGGTGTTCAGATTGATATTG+AGG | 0.444872 | 4.3:+78975211 | MS.gene037687:CDS |
| CAGCAAGAATGCTCTGAAAT+GGG | 0.466495 | 4.3:+78973205 | MS.gene037687:CDS |
| TGAAGCTCGTAATCAGTTAT+GGG | 0.466658 | 4.3:+78973295 | MS.gene037687:CDS |
| TGATGCAAGAGAGAAACTTA+TGG | 0.472999 | 4.3:+78975399 | MS.gene037687:CDS |
| TGCTGTTGAAGATCTGAAGC+TGG | 0.501707 | 4.3:+78975423 | MS.gene037687:CDS |
| GGTTCTCTGAACTCTTTCAA+AGG | 0.548832 | 4.3:-78975170 | None:intergenic |
| AATCAGTTATGGGCCAAAGA+TGG | 0.569005 | 4.3:+78973305 | MS.gene037687:CDS |
| TTGCCCAGTGACTATTGTCA+AGG | 0.614312 | 4.3:+78976735 | MS.gene037687:intron |
| CAAGAGAATCATGACTGATG+TGG | 0.615035 | 4.3:-78973271 | None:intergenic |
| ATTGTTACAAAAGTGTATTG+GGG | 0.627971 | 4.3:+78975376 | MS.gene037687:CDS |
| AAAAGATAGAACAATTGGTG+TGG | 0.650098 | 4.3:+78973163 | MS.gene037687:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATTATATAAATAA+GGG | - | chr4.3:78974920-78974939 | None:intergenic | 0.0% |
| !! | AAATATTAAAAGAAAATTAG+TGG | + | chr4.3:78973935-78973954 | MS.gene037687:intron | 10.0% |
| !! | TTAAAAAAGAATATTATAGT+GGG | - | chr4.3:78973837-78973856 | None:intergenic | 10.0% |
| !!! | CAAGATTTATTTTTTTTTAA+TGG | - | chr4.3:78974964-78974983 | None:intergenic | 10.0% |
| !!! | TGTAATAATTATTGATTTTT+AGG | + | chr4.3:78975348-78975367 | MS.gene037687:intron | 10.0% |
| !! | AAAAAATGAAGAAAAATGAA+TGG | - | chr4.3:78973343-78973362 | None:intergenic | 15.0% |
| !! | ATATTAAAGTATACTATCAT+TGG | - | chr4.3:78973807-78973826 | None:intergenic | 15.0% |
| !! | CAGAAAAAATATAAAAACAT+AGG | - | chr4.3:78973382-78973401 | None:intergenic | 15.0% |
| !! | CTTAAAAAAGAATATTATAG+TGG | - | chr4.3:78973838-78973857 | None:intergenic | 15.0% |
| !! | TAAAAAAATTTACAAAGAGT+GGG | - | chr4.3:78973783-78973802 | None:intergenic | 15.0% |
| !! | TAAAAAAGAATATTATAGTG+GGG | - | chr4.3:78973836-78973855 | None:intergenic | 15.0% |
| !! | TATTTGAATATTGTTAGAAA+TGG | + | chr4.3:78974621-78974640 | MS.gene037687:intron | 15.0% |
| !! | TTAAAAAAATTTACAAAGAG+TGG | - | chr4.3:78973784-78973803 | None:intergenic | 15.0% |
| !! | TTTGATTCATACATTTATAT+CGG | + | chr4.3:78973664-78973683 | MS.gene037687:intron | 15.0% |
| !!! | GATATTTGTAAAATTGATTT+TGG | - | chr4.3:78976391-78976410 | None:intergenic | 15.0% |
| !!! | GATCAAACTTTATTTATTTT+TGG | + | chr4.3:78973459-78973478 | MS.gene037687:intron | 15.0% |
| !!! | TTTCATCTTTTTTATTTGTT+TGG | - | chr4.3:78974022-78974041 | None:intergenic | 15.0% |
| !! | AAAAAAATTTACAAAGAGTG+GGG | - | chr4.3:78973782-78973801 | None:intergenic | 20.0% |
| !! | AAAATTAATTAGATCATGTG+GGG | + | chr4.3:78975588-78975607 | MS.gene037687:intron | 20.0% |
| !! | AAACACAAGATTAGAAAATT+AGG | - | chr4.3:78975518-78975537 | None:intergenic | 20.0% |
| !! | AAGTGAGACATAATAAAAAT+TGG | - | chr4.3:78974563-78974582 | None:intergenic | 20.0% |
| !! | AATTCTATAAACTTAAGCTT+TGG | - | chr4.3:78975647-78975666 | None:intergenic | 20.0% |
| !! | ACCTAATAATAATACAGTAT+AGG | - | chr4.3:78974475-78974494 | None:intergenic | 20.0% |
| !! | ACCTATACTGTATTATTATT+AGG | + | chr4.3:78974471-78974490 | MS.gene037687:intron | 20.0% |
| !! | AGAAAATTAATTAGATCATG+TGG | + | chr4.3:78975586-78975605 | MS.gene037687:intron | 20.0% |
| !! | AGTGAGACATAATAAAAATT+GGG | - | chr4.3:78974562-78974581 | None:intergenic | 20.0% |
| !! | ATACAGTATCATTCAAAAAT+TGG | - | chr4.3:78974518-78974537 | None:intergenic | 20.0% |
| !! | GAAAATTAATTAGATCATGT+GGG | + | chr4.3:78975587-78975606 | MS.gene037687:intron | 20.0% |
| !! | GAAGACAAAAATAAGAATAA+AGG | - | chr4.3:78974407-78974426 | None:intergenic | 20.0% |
| !! | TACAGTATCATTCAAAAATT+GGG | - | chr4.3:78974517-78974536 | None:intergenic | 20.0% |
| !! | TCAAACTAACAATATAAGAT+CGG | - | chr4.3:78973407-78973426 | None:intergenic | 20.0% |
| !! | TTGAATGATACTGTATTATT+AGG | + | chr4.3:78974522-78974541 | MS.gene037687:intron | 20.0% |
| !!! | AATCTTGTGTTTAATGTTTT+TGG | + | chr4.3:78975526-78975545 | MS.gene037687:intron | 20.0% |
| !!! | ATATTGTTACAAAAGTGTAT+TGG | + | chr4.3:78975374-78975393 | MS.gene037687:CDS | 20.0% |
| !!! | ATCTTGTGTTTAATGTTTTT+GGG | + | chr4.3:78975527-78975546 | MS.gene037687:intron | 20.0% |
| !!! | GACTCTAATAATCTAAAATT+CGG | - | chr4.3:78973486-78973505 | None:intergenic | 20.0% |
| !!! | TATTGTTACAAAAGTGTATT+GGG | + | chr4.3:78975375-78975394 | MS.gene037687:CDS | 20.0% |
| !!! | TTCAAAAGAAAAAAAAGTGT+TGG | + | chr4.3:78974063-78974082 | MS.gene037687:intron | 20.0% |
| !!! | TTCTCAAATCAATGTTATTT+TGG | + | chr4.3:78976201-78976220 | MS.gene037687:intron | 20.0% |
| ! | AAAGATGAAAAGTTAAGTGT+TGG | + | chr4.3:78974032-78974051 | MS.gene037687:intron | 25.0% |
| ! | AACTTATTGCTTGTTTGATT+TGG | + | chr4.3:78975959-78975978 | MS.gene037687:intron | 25.0% |
| ! | AAGTTAATAAAGTGGATATG+AGG | + | chr4.3:78974677-78974696 | MS.gene037687:intron | 25.0% |
| ! | AATAAAGGTAACAACTTACA+TGG | - | chr4.3:78974392-78974411 | None:intergenic | 25.0% |
| ! | ACAGTATCATTCAAAAATTG+GGG | - | chr4.3:78974516-78974535 | None:intergenic | 25.0% |
| ! | AGCAACCTAAAAAATTAAAG+TGG | - | chr4.3:78973867-78973886 | None:intergenic | 25.0% |
| ! | ATAAAGGTAACAACTTACAT+GGG | - | chr4.3:78974391-78974410 | None:intergenic | 25.0% |
| ! | ATACAGTATAGGTCAAAAAT+TGG | - | chr4.3:78974464-78974483 | None:intergenic | 25.0% |
| ! | ATTAAGATCATGTAGTGAAA+GGG | - | chr4.3:78976582-78976601 | None:intergenic | 25.0% |
| ! | ATTACCTTTAGATGATAACA+AGG | - | chr4.3:78974807-78974826 | None:intergenic | 25.0% |
| ! | ATTGAGATAGAATTGAGTTT+GGG | - | chr4.3:78976144-78976163 | None:intergenic | 25.0% |
| ! | CAACCTAAAAAATTAAAGTG+GGG | - | chr4.3:78973865-78973884 | None:intergenic | 25.0% |
| ! | GAATATTGTTAGAAATGGAA+AGG | + | chr4.3:78974626-78974645 | MS.gene037687:intron | 25.0% |
| ! | GCAACCTAAAAAATTAAAGT+GGG | - | chr4.3:78973866-78973885 | None:intergenic | 25.0% |
| ! | GTCTTAAGAAGTTAATAAAG+TGG | + | chr4.3:78974669-78974688 | MS.gene037687:intron | 25.0% |
| ! | GTGAGACATAATAAAAATTG+GGG | - | chr4.3:78974561-78974580 | None:intergenic | 25.0% |
| ! | TACAGTATAGGTCAAAAATT+GGG | - | chr4.3:78974463-78974482 | None:intergenic | 25.0% |
| ! | TGAATTGACAATGTATTCAT+AGG | - | chr4.3:78976605-78976624 | None:intergenic | 25.0% |
| ! | TTTGTAGCATTACAAAATCA+GGG | + | chr4.3:78975838-78975857 | MS.gene037687:intron | 25.0% |
| !! | ATTGTTACAAAAGTGTATTG+GGG | + | chr4.3:78975376-78975395 | MS.gene037687:CDS | 25.0% |
| !! | CTAAGAATAATGAAGAGTTT+TGG | + | chr4.3:78974852-78974871 | MS.gene037687:intron | 25.0% |
| !! | TTTTGTAGCATTACAAAATC+AGG | + | chr4.3:78975837-78975856 | MS.gene037687:intron | 25.0% |
| !!! | AAACCCCACTTTAATTTTTT+AGG | + | chr4.3:78973859-78973878 | MS.gene037687:intron | 25.0% |
| !!! | CATCAAAATATTTGTTGTGA+TGG | + | chr4.3:78976623-78976642 | MS.gene037687:intron | 25.0% |
| !!! | GGTGTTTTTATTTTCTCTTA+TGG | + | chr4.3:78974873-78974892 | MS.gene037687:intron | 25.0% |
| AAAAGATAGAACAATTGGTG+TGG | + | chr4.3:78973163-78973182 | MS.gene037687:CDS | 30.0% | |
| AAAATTTGAGTCTCATGAAC+AGG | + | chr4.3:78976668-78976687 | MS.gene037687:intron | 30.0% | |
| AAATAACAACAATAGTGGTG+TGG | - | chr4.3:78974172-78974191 | None:intergenic | 30.0% | |
| ACAGTATAGGTCAAAAATTG+GGG | - | chr4.3:78974462-78974481 | None:intergenic | 30.0% | |
| ATAGTGAGATCGAATAATCA+CGG | - | chr4.3:78975871-78975890 | None:intergenic | 30.0% | |
| ATGGCAAAAGATAGAACAAT+TGG | + | chr4.3:78973158-78973177 | MS.gene037687:CDS | 30.0% | |
| CATTGAGATAGAATTGAGTT+TGG | - | chr4.3:78976145-78976164 | None:intergenic | 30.0% | |
| CCAGAGATAATGAAAAAGTA+TGG | + | chr4.3:78975191-78975210 | MS.gene037687:CDS | 30.0% | |
| CTACAAGAAACTACAATCTA+CGG | - | chr4.3:78976038-78976057 | None:intergenic | 30.0% | |
| CTCATGAACAGGATATTATT+GGG | + | chr4.3:78976679-78976698 | MS.gene037687:intron | 30.0% | |
| CTTGAGAATTTAGCTGATAA+AGG | + | chr4.3:78973230-78973249 | MS.gene037687:CDS | 30.0% | |
| GAAGAGCTTATTTAGCAAAA+GGG | + | chr4.3:78974781-78974800 | MS.gene037687:intron | 30.0% | |
| GATTAAGATCATGTAGTGAA+AGG | - | chr4.3:78976583-78976602 | None:intergenic | 30.0% | |
| GCTACAAATAACAACAATAG+TGG | - | chr4.3:78974177-78974196 | None:intergenic | 30.0% | |
| TCTCATGAACAGGATATTAT+TGG | + | chr4.3:78976678-78976697 | MS.gene037687:intron | 30.0% | |
| TCTCTTATGGTGTATTACTT+TGG | + | chr4.3:78974886-78974905 | MS.gene037687:intron | 30.0% | |
| TGAAAAGTAACTATGCAGAT+TGG | + | chr4.3:78973971-78973990 | MS.gene037687:intron | 30.0% | |
| TGTAATGCTACAAAAATGAG+TGG | - | chr4.3:78975832-78975851 | None:intergenic | 30.0% | |
| TTAAGATCATGTAGTGAAAG+GGG | - | chr4.3:78976581-78976600 | None:intergenic | 30.0% | |
| TTCATAAGTTCACAACAGAA+TGG | - | chr4.3:78976014-78976033 | None:intergenic | 30.0% | |
| TTGAGATAGAATTGAGTTTG+GGG | - | chr4.3:78976143-78976162 | None:intergenic | 30.0% | |
| TTTCAGTGACATGATACAAT+TGG | + | chr4.3:78975701-78975720 | MS.gene037687:intron | 30.0% | |
| ! | ACCAACGTAAATGTGATTTT+TGG | - | chr4.3:78975921-78975940 | None:intergenic | 30.0% |
| ! | AGTTTAGACAAGGATGTTTT+AGG | + | chr4.3:78975310-78975329 | MS.gene037687:intron | 30.0% |
| ! | CCAACGTAAATGTGATTTTT+GGG | - | chr4.3:78975920-78975939 | None:intergenic | 30.0% |
| ! | GAAGGTTTTTACAACAATAG+TGG | - | chr4.3:78974332-78974351 | None:intergenic | 30.0% |
| ! | TGATTTTATGTCACTGCAAA+AGG | - | chr4.3:78976180-78976199 | None:intergenic | 30.0% |
| ! | TTTTTACAACAATAGTGGTC+TGG | - | chr4.3:78974327-78974346 | None:intergenic | 30.0% |
| !! | GATATTTATCTGAGTACTGA+AGG | + | chr4.3:78976542-78976561 | MS.gene037687:intron | 30.0% |
| !! | TTCGATTTTGATACGATATC+TGG | + | chr4.3:78973697-78973716 | MS.gene037687:intron | 30.0% |
| !!! | ACATGACAGGATATTGATTT+TGG | + | chr4.3:78975068-78975087 | MS.gene037687:intron | 30.0% |
| !!! | ATTTGCTTGACACTTTTTCA+AGG | + | chr4.3:78975240-78975259 | MS.gene037687:CDS | 30.0% |
| !!! | CAGGATATTGATTTTGGTTT+TGG | + | chr4.3:78975074-78975093 | MS.gene037687:intron | 30.0% |
| !!! | CCATACTTTTTCATTATCTC+TGG | - | chr4.3:78975194-78975213 | None:intergenic | 30.0% |
| !!! | TCTGCATTTTAGTTTAGACA+AGG | + | chr4.3:78975300-78975319 | MS.gene037687:intron | 30.0% |
| AATCAAGAGAACATATGCAC+TGG | - | chr4.3:78975024-78975043 | None:intergenic | 35.0% | |
| ACAACTGCGTTATAAAGTGT+TGG | + | chr4.3:78976267-78976286 | MS.gene037687:intron | 35.0% | |
| ACTATCCAAACATGTACGTT+TGG | + | chr4.3:78975886-78975905 | MS.gene037687:intron | 35.0% | |
| ACTTTGTTGGATTGAAAGTG+TGG | + | chr4.3:78976235-78976254 | MS.gene037687:intron | 35.0% | |
| AGTAACAACAACAGAACAGA+AGG | - | chr4.3:78974350-78974369 | None:intergenic | 35.0% | |
| ATCCAACAAAGTGTAAGCTT+TGG | - | chr4.3:78976227-78976246 | None:intergenic | 35.0% | |
| ATGAAGCTCGTAATCAGTTA+TGG | + | chr4.3:78973294-78973313 | MS.gene037687:CDS | 35.0% | |
| CCCAAAAATCACATTTACGT+TGG | + | chr4.3:78975917-78975936 | MS.gene037687:intron | 35.0% | |
| CGAAGAGCTTATTTAGCAAA+AGG | + | chr4.3:78974780-78974799 | MS.gene037687:intron | 35.0% | |
| CGAATTTCATCTCTGTCATT+TGG | - | chr4.3:78974762-78974781 | None:intergenic | 35.0% | |
| GACAATTGTTTCCTTTATCC+AGG | - | chr4.3:78974729-78974748 | None:intergenic | 35.0% | |
| GCTAGAATCAATTATAGGAC+TGG | - | chr4.3:78976121-78976140 | None:intergenic | 35.0% | |
| GTCTCACTTTGTGATTGAAT+TGG | + | chr4.3:78974574-78974593 | MS.gene037687:intron | 35.0% | |
| TAAGATCATGTAGTGAAAGG+GGG | - | chr4.3:78976580-78976599 | None:intergenic | 35.0% | |
| TATCCTTGACAATAGTCACT+GGG | - | chr4.3:78976741-78976760 | None:intergenic | 35.0% | |
| TGAAGCTCGTAATCAGTTAT+GGG | + | chr4.3:78973295-78973314 | MS.gene037687:CDS | 35.0% | |
| TGATGCAAGAGAGAAACTTA+TGG | + | chr4.3:78975399-78975418 | MS.gene037687:CDS | 35.0% | |
| TGGTGTTCAGATTGATATTG+AGG | + | chr4.3:78975211-78975230 | MS.gene037687:CDS | 35.0% | |
| TGTAACCAAACGTACATGTT+TGG | - | chr4.3:78975894-78975913 | None:intergenic | 35.0% | |
| TTAACGAGAATTCAGTTCTG+CGG | - | chr4.3:78976439-78976458 | None:intergenic | 35.0% | |
| TTATCCTTGACAATAGTCAC+TGG | - | chr4.3:78976742-78976761 | None:intergenic | 35.0% | |
| TTGGGGCTAGAATCAATTAT+AGG | - | chr4.3:78976126-78976145 | None:intergenic | 35.0% | |
| ! | AAGCTGGATTCTCTTGTTAT+GGG | + | chr4.3:78975439-78975458 | MS.gene037687:CDS | 35.0% |
| ! | AAGTGGATATGAGGTTGATT+TGG | + | chr4.3:78974686-78974705 | MS.gene037687:intron | 35.0% |
| ! | TTTATCTTTTGACCGAACTC+TGG | + | chr4.3:78973555-78973574 | MS.gene037687:intron | 35.0% |
| !! | ACGTAAATGTGATTTTTGGG+TGG | - | chr4.3:78975917-78975936 | None:intergenic | 35.0% |
| !! | CATATAGAAGAGCGTCTATT+AGG | + | chr4.3:78976493-78976512 | MS.gene037687:intron | 35.0% |
| !! | TTCTTTTTGTTGTCACTCTC+CGG | - | chr4.3:78973607-78973626 | None:intergenic | 35.0% |
| !!! | CACTTTTTCAAGGCAAAAAG+AGG | + | chr4.3:78975250-78975269 | MS.gene037687:CDS | 35.0% |
| AAGTGAATCGCTGCTTATAC+TGG | - | chr4.3:78974298-78974317 | None:intergenic | 40.0% | |
| AATCAGTTATGGGCCAAAGA+TGG | + | chr4.3:78973305-78973324 | MS.gene037687:CDS | 40.0% | |
| AGACGCTCTTCTATATGCAT+CGG | - | chr4.3:78976490-78976509 | None:intergenic | 40.0% | |
| AGTCTCGAGTCTAATTAGAC+TGG | + | chr4.3:78973502-78973521 | MS.gene037687:intron | 40.0% | |
| ATACTCAAGTCGCTCATGTT+TGG | + | chr4.3:78975727-78975746 | MS.gene037687:intron | 40.0% | |
| ATGACATGACATGACATGAC+AGG | + | chr4.3:78975050-78975069 | MS.gene037687:intron | 40.0% | |
| CAAGAGAATCATGACTGATG+TGG | - | chr4.3:78973274-78973293 | None:intergenic | 40.0% | |
| GAAGCTGGATTCTCTTGTTA+TGG | + | chr4.3:78975438-78975457 | MS.gene037687:CDS | 40.0% | |
| GGTTCTCTGAACTCTTTCAA+AGG | - | chr4.3:78975173-78975192 | None:intergenic | 40.0% | |
| GTACTTACGAGAACCATCTT+TGG | - | chr4.3:78973321-78973340 | None:intergenic | 40.0% | |
| GTAGCATTACAAAATCAGGG+TGG | + | chr4.3:78975841-78975860 | MS.gene037687:intron | 40.0% | |
| GTTTGTTTCCACTGCAGAAT+GGG | - | chr4.3:78976075-78976094 | None:intergenic | 40.0% | |
| TAGAACAATTGGTGTGGCTT+TGG | + | chr4.3:78973169-78973188 | MS.gene037687:CDS | 40.0% | |
| TGTTTGTTTCCACTGCAGAA+TGG | - | chr4.3:78976076-78976095 | None:intergenic | 40.0% | |
| ! | ACATTTACGTTGGTGAAACG+TGG | + | chr4.3:78975927-78975946 | MS.gene037687:intron | 40.0% |
| ! | AGAACATATGCACTGGTAAC+AGG | - | chr4.3:78975017-78975036 | None:intergenic | 40.0% |
| ! | ATTCTCTTGTTATGGGTAGC+AGG | + | chr4.3:78975446-78975465 | MS.gene037687:intron | 40.0% |
| ! | GAACATATGCACTGGTAACA+GGG | - | chr4.3:78975016-78975035 | None:intergenic | 40.0% |
| ! | TAACTATGCAGATTGGCTAG+TGG | + | chr4.3:78973978-78973997 | MS.gene037687:intron | 40.0% |
| ! | TACGTGAGTCAGAACGATTT+TGG | + | chr4.3:78975773-78975792 | MS.gene037687:intron | 40.0% |
| ! | TTCTCTTGTTATGGGTAGCA+GGG | + | chr4.3:78975447-78975466 | MS.gene037687:intron | 40.0% |
| !! | AGATCATGTGGGGTTTGTTT+TGG | + | chr4.3:78975598-78975617 | MS.gene037687:intron | 40.0% |
| !! | AGGGCCTTGTTATCATCTAA+AGG | + | chr4.3:78974800-78974819 | MS.gene037687:intron | 40.0% |
| !! | CAGCAAGAATGCTCTGAAAT+GGG | + | chr4.3:78973205-78973224 | MS.gene037687:CDS | 40.0% |
| !! | GATCATGTGGGGTTTGTTTT+GGG | + | chr4.3:78975599-78975618 | MS.gene037687:intron | 40.0% |
| !! | TGGATTGAAAGTGTGGCTTT+TGG | + | chr4.3:78976242-78976261 | MS.gene037687:intron | 40.0% |
| !!! | ATCATGTGGGGTTTGTTTTG+GGG | + | chr4.3:78975600-78975619 | MS.gene037687:intron | 40.0% |
| !!! | GTTTGTTTTGGGGTCTAAGT+TGG | + | chr4.3:78975610-78975629 | MS.gene037687:intron | 40.0% |
| AAAACCTTCTGCTACCTAGC+TGG | + | chr4.3:78974122-78974141 | MS.gene037687:intron | 45.0% | |
| AATCGCTGCTTATACTGGTG+TGG | - | chr4.3:78974293-78974312 | None:intergenic | 45.0% | |
| ACAACAATAGTGGTGTGGTG+TGG | - | chr4.3:78974167-78974186 | None:intergenic | 45.0% | |
| ACAATGATAGATGCGTGCCT+AGG | + | chr4.3:78975987-78976006 | MS.gene037687:intron | 45.0% | |
| AGCAAACTAGCAATTGCACG+CGG | - | chr4.3:78974239-78974258 | None:intergenic | 45.0% | |
| ATCCAGGAATTTCGGAAAGG+GGG | - | chr4.3:78974989-78975008 | None:intergenic | 45.0% | |
| CAAACTCTGGATTACCAGTC+AGG | + | chr4.3:78973721-78973740 | MS.gene037687:intron | 45.0% | |
| CACTGCAGAATGGGTATAAG+AGG | - | chr4.3:78976066-78976085 | None:intergenic | 45.0% | |
| CTCTTATACCCATTCTGCAG+TGG | + | chr4.3:78976064-78976083 | MS.gene037687:intron | 45.0% | |
| CTGACTGGTAATCCAGAGTT+TGG | - | chr4.3:78973723-78973742 | None:intergenic | 45.0% | |
| GAAAATCTTCCTGCTGATCC+TGG | + | chr4.3:78974708-78974727 | MS.gene037687:intron | 45.0% | |
| GAACTCTGGATTATCAGGAC+CGG | + | chr4.3:78973569-78973588 | MS.gene037687:intron | 45.0% | |
| GATCCAGGAATTTCGGAAAG+GGG | - | chr4.3:78974990-78975009 | None:intergenic | 45.0% | |
| GGATCCAGGAATTTCGGAAA+GGG | - | chr4.3:78974991-78975010 | None:intergenic | 45.0% | |
| GGCCAAAGCTTACACTTTGT+TGG | + | chr4.3:78976222-78976241 | MS.gene037687:intron | 45.0% | |
| GGTCCTGATAATCCAGAGTT+CGG | - | chr4.3:78973570-78973589 | None:intergenic | 45.0% | |
| GTTCACAACAGAATGGACCT+AGG | - | chr4.3:78976007-78976026 | None:intergenic | 45.0% | |
| TACGATATCTGGCCAAACTC+TGG | + | chr4.3:78973708-78973727 | MS.gene037687:intron | 45.0% | |
| TATACTGGTGTGGTGTGGAA+TGG | - | chr4.3:78974283-78974302 | None:intergenic | 45.0% | |
| TCTCCGGTTCTTAGAGAAAC+CGG | - | chr4.3:78973591-78973610 | None:intergenic | 45.0% | |
| TGACCGAACTCTGGATTATC+AGG | + | chr4.3:78973564-78973583 | MS.gene037687:intron | 45.0% | |
| TTCCTGCTGATCCTGGATAA+AGG | + | chr4.3:78974715-78974734 | MS.gene037687:intron | 45.0% | |
| TTCCTTTATCCAGGATCAGC+AGG | - | chr4.3:78974720-78974739 | None:intergenic | 45.0% | |
| TTGACAATAGTCACTGGGCA+AGG | - | chr4.3:78976736-78976755 | None:intergenic | 45.0% | |
| TTGCCCAGTGACTATTGTCA+AGG | + | chr4.3:78976735-78976754 | MS.gene037687:intron | 45.0% | |
| ! | ATATGCACTGGTAACAGGGA+CGG | - | chr4.3:78975012-78975031 | None:intergenic | 45.0% |
| ! | CAACAATAGTGGTCTGGAAC+TGG | - | chr4.3:78974321-78974340 | None:intergenic | 45.0% |
| ! | TCTCTTGTTATGGGTAGCAG+GGG | + | chr4.3:78975448-78975467 | MS.gene037687:intron | 45.0% |
| ! | TGCTGTTGAAGATCTGAAGC+TGG | + | chr4.3:78975423-78975442 | MS.gene037687:CDS | 45.0% |
| !! | GCAGCAAGAATGCTCTGAAA+TGG | + | chr4.3:78973204-78973223 | MS.gene037687:CDS | 45.0% |
| !! | AAATATATTATATAAATAAG+GGG | - | chr4.3:78974919-78974938 | None:intergenic | 5.0% |
| !! | CAAAATATATTATATAAATA+AGG | - | chr4.3:78974921-78974940 | None:intergenic | 5.0% |
| !!! | ATTTATGTTTTTTTTTTTTT+TGG | + | chr4.3:78975131-78975150 | MS.gene037687:intron | 5.0% |
| AATTGCACGCGGCACTTAAC+TGG | - | chr4.3:78974228-78974247 | None:intergenic | 50.0% | |
| AGGGACGGATCCAGGAATTT+CGG | - | chr4.3:78974997-78975016 | None:intergenic | 50.0% | |
| CGGATCCAGGAATTTCGGAA+AGG | - | chr4.3:78974992-78975011 | None:intergenic | 50.0% | |
| CTGCTTATACTGGTGTGGTG+TGG | - | chr4.3:78974288-78974307 | None:intergenic | 50.0% | |
| GGAAATGAATCGCTCCAGCT+AGG | - | chr4.3:78974139-78974158 | None:intergenic | 50.0% | |
| GGGGTCTCAGCACAATTCAA+AGG | + | chr4.3:78975467-78975486 | MS.gene037687:intron | 50.0% | |
| GTCGCTCATGTTTGGATGAG+CGG | + | chr4.3:78975735-78975754 | MS.gene037687:intron | 50.0% | |
| TAGTGGTGTGGTGTGGAATC+TGG | - | chr4.3:78974160-78974179 | None:intergenic | 50.0% | |
| TCCAGGAATTTCGGAAAGGG+GGG | - | chr4.3:78974988-78975007 | None:intergenic | 50.0% | |
| TCTGGATTACCAGTCAGGCA+CGG | + | chr4.3:78973726-78973745 | MS.gene037687:intron | 50.0% | |
| ! | ACTTAACTGGTGGTGTGGTG+TGG | - | chr4.3:78974215-78974234 | None:intergenic | 50.0% |
| ! | CAGAGCATTCTTGCTGCTCT+TGG | - | chr4.3:78973201-78973220 | None:intergenic | 50.0% |
| ! | GATGCAGGTAGAGGGTTTTG+GGG | + | chr4.3:78973748-78973767 | MS.gene037687:intron | 50.0% |
| ! | GGACCGGTTTCTCTAAGAAC+CGG | + | chr4.3:78973585-78973604 | MS.gene037687:intron | 50.0% |
| ! | GGATGCAGGTAGAGGGTTTT+GGG | + | chr4.3:78973747-78973766 | MS.gene037687:intron | 50.0% |
| ACCCCCCTTTCCGAAATTCC+TGG | + | chr4.3:78974984-78975003 | MS.gene037687:intron | 55.0% | |
| ! | AGTCACTGGGCAAGGAGCAT+TGG | - | chr4.3:78976728-78976747 | None:intergenic | 55.0% |
| ! | CGGATGCAGGTAGAGGGTTT+TGG | + | chr4.3:78973746-78973765 | MS.gene037687:intron | 55.0% |
| ! | CTGGTGGTGTGGTGTGGAAT+TGG | - | chr4.3:78974209-78974228 | None:intergenic | 55.0% |
| CAGGCACGGATGCAGGTAGA+GGG | + | chr4.3:78973740-78973759 | MS.gene037687:intron | 60.0% | |
| CGCTCCAGCTAGGTAGCAGA+AGG | - | chr4.3:78974129-78974148 | None:intergenic | 60.0% | |
| CTGGTAACAGGGACGGATCC+AGG | - | chr4.3:78975005-78975024 | None:intergenic | 60.0% | |
| TACCAGTCAGGCACGGATGC+AGG | + | chr4.3:78973733-78973752 | MS.gene037687:intron | 60.0% | |
| TACCTGCATCCGTGCCTGAC+TGG | - | chr4.3:78973738-78973757 | None:intergenic | 60.0% | |
| TCAGGCACGGATGCAGGTAG+AGG | + | chr4.3:78973739-78973758 | MS.gene037687:intron | 60.0% | |
| TGCACGCGGCACTTAACTGG+TGG | - | chr4.3:78974225-78974244 | None:intergenic | 60.0% | |
| ! | GCGGCACTTAACTGGTGGTG+TGG | - | chr4.3:78974220-78974239 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 78973158 | 78976783 | 78973158 | ID=MS.gene037687 |
| chr4.3 | mRNA | 78973158 | 78976783 | 78973158 | ID=MS.gene037687.t1;Parent=MS.gene037687 |
| chr4.3 | exon | 78973158 | 78973332 | 78973158 | ID=MS.gene037687.t1.exon1;Parent=MS.gene037687.t1 |
| chr4.3 | CDS | 78973158 | 78973332 | 78973158 | ID=cds.MS.gene037687.t1;Parent=MS.gene037687.t1 |
| chr4.3 | exon | 78975162 | 78975271 | 78975162 | ID=MS.gene037687.t1.exon2;Parent=MS.gene037687.t1 |
| chr4.3 | CDS | 78975162 | 78975271 | 78975162 | ID=cds.MS.gene037687.t1;Parent=MS.gene037687.t1 |
| chr4.3 | exon | 78975370 | 78975460 | 78975370 | ID=MS.gene037687.t1.exon3;Parent=MS.gene037687.t1 |
| chr4.3 | CDS | 78975370 | 78975460 | 78975370 | ID=cds.MS.gene037687.t1;Parent=MS.gene037687.t1 |
| chr4.3 | exon | 78976743 | 78976783 | 78976743 | ID=MS.gene037687.t1.exon4;Parent=MS.gene037687.t1 |
| chr4.3 | CDS | 78976743 | 78976783 | 78976743 | ID=cds.MS.gene037687.t1;Parent=MS.gene037687.t1 |
| Gene Sequence |
| Protein sequence |
