Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001733.t1 | XP_003591748.3 | 99.1 | 843 | 7 | 1 | 1 | 842 | 1 | 843 | 0.00E+00 | 1678.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001733.t1 | F4J3T8 | 66.4 | 851 | 266 | 7 | 1 | 842 | 1 | 840 | 0.0e+00 | 1112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001733.t1 | A0A396JSR1 | 99.1 | 843 | 7 | 1 | 1 | 842 | 1 | 843 | 0.0e+00 | 1678.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001733 | MS.gene52620 | PPI |
| MS.gene001733 | MS.gene064542 | PPI |
| MS.gene44056 | MS.gene001733 | PPI |
| MS.gene035805 | MS.gene001733 | PPI |
| MS.gene005189 | MS.gene001733 | PPI |
| MS.gene001733 | MS.gene91547 | PPI |
| MS.gene001733 | MS.gene73119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001733.t1 | MTR_1g492590 | 99.254 | 536 | 4 | 0 | 307 | 842 | 7 | 542 | 0.0 | 1111 |
| MS.gene001733.t1 | MTR_1g092570 | 98.387 | 310 | 4 | 1 | 1 | 309 | 1 | 310 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001733.t1 | AT3G10550 | 66.510 | 851 | 265 | 7 | 1 | 842 | 1 | 840 | 0.0 | 1140 |
| MS.gene001733.t1 | AT5G04540 | 63.822 | 832 | 282 | 5 | 13 | 839 | 13 | 830 | 0.0 | 1045 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCAATGGTGCGATTAT+TGG | 0.179147 | 1.3:+64242409 | MS.gene001733:CDS |
| TCGGACATTCAGAGGGTTTC+AGG | 0.180121 | 1.3:+64246021 | MS.gene001733:CDS |
| TCCCCACTATGTGCTTCTTC+TGG | 0.182525 | 1.3:-64248585 | None:intergenic |
| TTGGAAACTTCTTCTTTAAT+AGG | 0.208642 | 1.3:+64247504 | MS.gene001733:CDS |
| TGAAAAGGGAACCTCAATTT+TGG | 0.235304 | 1.3:-64236990 | None:intergenic |
| GTACTTCAGTGGATCATAAA+AGG | 0.243637 | 1.3:-64248487 | None:intergenic |
| GATATGAGAATTATAGTCTT+TGG | 0.249660 | 1.3:+64241703 | MS.gene001733:CDS |
| GTACAAAGCCCACAATATTA+TGG | 0.253124 | 1.3:+64242342 | MS.gene001733:CDS |
| ATGAATTACCTAATGCTCTT+TGG | 0.263678 | 1.3:-64242587 | None:intergenic |
| CTTCTGTTCTTGTTCATTGC+AGG | 0.263762 | 1.3:+64245832 | MS.gene001733:CDS |
| AAGCCCAACGAAGGTGAAAT+TGG | 0.268121 | 1.3:-64248560 | None:intergenic |
| CCTCTGAATGTCCGATAATA+TGG | 0.271777 | 1.3:-64246013 | None:intergenic |
| GATCTTTATGCTTATTCGTC+TGG | 0.282063 | 1.3:+64242365 | MS.gene001733:CDS |
| GTCGGGGCTAACGCTGCTGC+TGG | 0.282113 | 1.3:-64248528 | None:intergenic |
| GCCGTCTGCCTGTAATTTCT+TGG | 0.302001 | 1.3:+64242751 | MS.gene001733:CDS |
| TTTCATTATTAAGGCTTTCC+TGG | 0.313939 | 1.3:+64247448 | MS.gene001733:intron |
| CAGCGTTAGCCCCGACTATA+TGG | 0.337540 | 1.3:+64248535 | MS.gene001733:CDS |
| AGAGACATGGTGGGTCGATA+TGG | 0.337896 | 1.3:+64245682 | MS.gene001733:intron |
| ACTCTGGCACATTGTATAAC+TGG | 0.340220 | 1.3:-64242543 | None:intergenic |
| TGGATGTTTGTGGGCATACT+TGG | 0.348237 | 1.3:+64248419 | MS.gene001733:CDS |
| TGTTGCTTGATCCATATTAT+CGG | 0.355341 | 1.3:+64246002 | MS.gene001733:CDS |
| TGGTTGTTCCAAAGAGCATT+AGG | 0.357442 | 1.3:+64242579 | MS.gene001733:CDS |
| TCGGGGCTAACGCTGCTGCT+GGG | 0.359394 | 1.3:-64248527 | None:intergenic |
| AAGCGTGCAATTCAGTCAAT+TGG | 0.363650 | 1.3:+64249026 | MS.gene001733:CDS |
| CCCCACTATGTGCTTCTTCT+GGG | 0.364165 | 1.3:-64248584 | None:intergenic |
| GGAGAGACAAAACGCGAAAT+TGG | 0.366962 | 1.3:-64237083 | None:intergenic |
| TGCATGCTTTCTTCTCGCTT+TGG | 0.368459 | 1.3:+64247485 | MS.gene001733:CDS |
| ATTTAGGAACTCAATTTACT+TGG | 0.383255 | 1.3:-64249390 | None:intergenic |
| CTGACTCCTCCACCGGTAGC+TGG | 0.384134 | 1.3:+64236951 | MS.gene001733:CDS |
| AGCCCAACGAAGGTGAAATT+GGG | 0.384756 | 1.3:-64248559 | None:intergenic |
| GATGATGGAAACGATGTTAT+TGG | 0.384760 | 1.3:+64249212 | MS.gene001733:CDS |
| TCACCAATGCGCCAGCCATC+AGG | 0.388168 | 1.3:+64246337 | MS.gene001733:CDS |
| TGTGGGCATACTTGGCTGAT+AGG | 0.391042 | 1.3:+64248427 | MS.gene001733:CDS |
| CGGGGCTAACGCTGCTGCTG+GGG | 0.391769 | 1.3:-64248526 | None:intergenic |
| CATGAGTGTCTATGAATTCT+CGG | 0.393322 | 1.3:-64245136 | None:intergenic |
| TGCTGTGATTAACGACAAAA+AGG | 0.394698 | 1.3:+64249157 | MS.gene001733:CDS |
| ACGTGTCTTTCGAGTTATCT+AGG | 0.396410 | 1.3:+64246290 | MS.gene001733:CDS |
| CTCCATCTTTCGTACGAAAC+GGG | 0.397679 | 1.3:-64249256 | None:intergenic |
| CAACTAGGTAGCCAGTTTGT+TGG | 0.399476 | 1.3:+64249308 | MS.gene001733:CDS |
| GGCTGGCGCATTGGTGATGA+TGG | 0.401459 | 1.3:-64246331 | None:intergenic |
| ATCTTTATGCTTATTCGTCT+GGG | 0.406653 | 1.3:+64242366 | MS.gene001733:CDS |
| AAGTTTGGATGTGCTCCCGC+TGG | 0.409201 | 1.3:-64249104 | None:intergenic |
| GGCCCCAATTTCACCTTCGT+TGG | 0.409598 | 1.3:+64248556 | MS.gene001733:CDS |
| CTAGAGGAACAATACAAGTT+TGG | 0.409967 | 1.3:-64249119 | None:intergenic |
| GAGACATGGTGGGTCGATAT+GGG | 0.413049 | 1.3:+64245683 | MS.gene001733:intron |
| GAAATTGGGGCCATATAGTC+GGG | 0.423097 | 1.3:-64248545 | None:intergenic |
| AATTAGCAAGTGAAACTAAC+TGG | 0.423507 | 1.3:-64245979 | None:intergenic |
| GCGGTAATGTCCCTGATGGC+TGG | 0.423930 | 1.3:-64246348 | None:intergenic |
| CCATCTCATGCACATAGTTC+AGG | 0.427292 | 1.3:+64246376 | MS.gene001733:CDS |
| TGCCCGTTTCGTACGAAAGA+TGG | 0.429206 | 1.3:+64249254 | MS.gene001733:CDS |
| CTGCTTCAGTATCAACCCTT+GGG | 0.431439 | 1.3:+64245730 | MS.gene001733:CDS |
| TTGAAAGTTGTGGATGTTTG+TGG | 0.432364 | 1.3:+64248409 | MS.gene001733:CDS |
| CGTTCTTCCCAACCTTTAGT+TGG | 0.432900 | 1.3:+64242941 | MS.gene001733:CDS |
| AAACTTGTGGCCGCACTTTG+TGG | 0.438003 | 1.3:+64243415 | MS.gene001733:CDS |
| GTGGGAACACCGTCTATCTC+TGG | 0.440063 | 1.3:+64246259 | MS.gene001733:CDS |
| CCAGAGTTATCCATTTGCTT+TGG | 0.442979 | 1.3:+64242559 | MS.gene001733:CDS |
| GCCCCAATTTCACCTTCGTT+GGG | 0.446668 | 1.3:+64248557 | MS.gene001733:CDS |
| TACAAAGCCCACAATATTAT+GGG | 0.447087 | 1.3:+64242343 | MS.gene001733:CDS |
| AGCTTCTCATCATGCTTCAA+TGG | 0.447240 | 1.3:+64242457 | MS.gene001733:CDS |
| TCGCTTTCAAACCAACAAAC+TGG | 0.447453 | 1.3:-64249319 | None:intergenic |
| TTCTCCACAAGTCATTTGAC+AGG | 0.447739 | 1.3:-64242505 | None:intergenic |
| TTATCTAGGCAGTCTTCAAC+TGG | 0.448887 | 1.3:+64246304 | MS.gene001733:CDS |
| AGTTGAGCACAACCACCATT+TGG | 0.453492 | 1.3:-64249290 | None:intergenic |
| CAAAGACTGCTGCAGGTGAT+TGG | 0.455555 | 1.3:+64241308 | MS.gene001733:CDS |
| TGTTCTTTGGTAGTGATGGA+TGG | 0.455718 | 1.3:+64245945 | MS.gene001733:intron |
| TTGCACGGAATTTGCAAGCC+TGG | 0.457643 | 1.3:-64242725 | None:intergenic |
| GGATGACACCAAGAAATTAC+AGG | 0.458798 | 1.3:-64242759 | None:intergenic |
| ACTAGAAAAGTTATTGCCCT+TGG | 0.465404 | 1.3:+64240577 | MS.gene001733:CDS |
| TGGAGAGGTGTTCTTAAAAG+TGG | 0.466314 | 1.3:-64242393 | None:intergenic |
| TGTCTTGTTAAACTTCTCAA+TGG | 0.471583 | 1.3:-64240617 | None:intergenic |
| TGCTCGTGTTGCTATGGAAA+AGG | 0.473459 | 1.3:+64245809 | MS.gene001733:CDS |
| TGAAAGTTGTGGATGTTTGT+GGG | 0.475142 | 1.3:+64248410 | MS.gene001733:CDS |
| GAGGATAACCAAAGAAAATA+CGG | 0.475246 | 1.3:+64248998 | MS.gene001733:CDS |
| GTTGGTGTGGCACGGTGTCT+CGG | 0.476756 | 1.3:-64236908 | None:intergenic |
| GGCATCCCAGCTACCGGTGG+AGG | 0.478455 | 1.3:-64236957 | None:intergenic |
| AACTGTCATCAATTGAAAGT+TGG | 0.478726 | 1.3:-64249358 | None:intergenic |
| CAAACTTGTATTGTTCCTCT+AGG | 0.478848 | 1.3:+64249120 | MS.gene001733:CDS |
| CATGAGACCAACTAAAGGTT+GGG | 0.480942 | 1.3:-64242948 | None:intergenic |
| GATTGCTGCTCGTGTTGCTA+TGG | 0.482381 | 1.3:+64245803 | MS.gene001733:CDS |
| GGCATACTTGGCTGATAGGC+GGG | 0.484201 | 1.3:+64248431 | MS.gene001733:CDS |
| GTAATTTCTTGGTGTCATCC+TGG | 0.484344 | 1.3:+64242762 | MS.gene001733:CDS |
| TTTGGAACAACCAAAGCAAA+TGG | 0.486763 | 1.3:-64242569 | None:intergenic |
| ATGGGTTCTGTTTAGAGACA+TGG | 0.490337 | 1.3:+64245669 | MS.gene001733:intron |
| CCTTGAATGGACCAAAATTG+AGG | 0.495563 | 1.3:+64236979 | MS.gene001733:CDS |
| GTAGCTGGGATGCCCTTGAA+TGG | 0.505594 | 1.3:+64236966 | MS.gene001733:CDS |
| GTCCCTGATGGCTGGCGCAT+TGG | 0.505641 | 1.3:-64246340 | None:intergenic |
| TGACTCCTCCACCGGTAGCT+GGG | 0.505756 | 1.3:+64236952 | MS.gene001733:CDS |
| GGGGCTAACGCTGCTGCTGG+GGG | 0.506577 | 1.3:-64248525 | None:intergenic |
| TCTGCTTCAGTATCAACCCT+TGG | 0.507545 | 1.3:+64245729 | MS.gene001733:CDS |
| GTTCTTTGGTAGTGATGGAT+GGG | 0.509830 | 1.3:+64245946 | MS.gene001733:intron |
| GCTAATGGAGCCATGGGAGG+TGG | 0.510157 | 1.3:+64244926 | MS.gene001733:CDS |
| TGCAATGTGTTTGAAAGTTG+TGG | 0.511797 | 1.3:+64248399 | MS.gene001733:CDS |
| CCTCCATCTTTCGTACGAAA+CGG | 0.512251 | 1.3:-64249257 | None:intergenic |
| GGCTGCAGGTGGCCAAATGG+TGG | 0.513018 | 1.3:+64249278 | MS.gene001733:CDS |
| TACTTCAGTGGATCATAAAA+GGG | 0.515443 | 1.3:-64248486 | None:intergenic |
| TCATCCAATAATCGCACCAT+TGG | 0.515465 | 1.3:-64242413 | None:intergenic |
| AGCGTGCAATTCAGTCAATT+GGG | 0.518763 | 1.3:+64249027 | MS.gene001733:CDS |
| TGCATTAGCTAATGGAGCCA+TGG | 0.520047 | 1.3:+64244919 | MS.gene001733:CDS |
| TTTAGGAACTCAATTTACTT+GGG | 0.520091 | 1.3:-64249389 | None:intergenic |
| TGAAATTGGGGCCATATAGT+CGG | 0.520224 | 1.3:-64248546 | None:intergenic |
| GGAGGCTGCAGGTGGCCAAA+TGG | 0.523171 | 1.3:+64249275 | MS.gene001733:CDS |
| GCAGAAAACTCAAACGCAAA+AGG | 0.523563 | 1.3:-64247348 | None:intergenic |
| GTACGAAAGATGGAGGCTGC+AGG | 0.523660 | 1.3:+64249264 | MS.gene001733:CDS |
| CCATATTATCGGACATTCAG+AGG | 0.523878 | 1.3:+64246013 | MS.gene001733:CDS |
| TCATGAGACCAACTAAAGGT+TGG | 0.524291 | 1.3:-64242949 | None:intergenic |
| TGCTAGTGGTATTGTTCCAA+GGG | 0.525165 | 1.3:-64240593 | None:intergenic |
| TAAAGATCCCATAATATTGT+GGG | 0.526056 | 1.3:-64242350 | None:intergenic |
| ACCAACACAAAGACTGCTGC+AGG | 0.527140 | 1.3:+64241301 | MS.gene001733:CDS |
| TTCAAGGGCATCCCAGCTAC+CGG | 0.528328 | 1.3:-64236963 | None:intergenic |
| TTGCTAGTGGTATTGTTCCA+AGG | 0.536488 | 1.3:-64240594 | None:intergenic |
| TCACCCTGTCAAATGACTTG+TGG | 0.539321 | 1.3:+64242501 | MS.gene001733:CDS |
| CACCAATGCGCCAGCCATCA+GGG | 0.539335 | 1.3:+64246338 | MS.gene001733:CDS |
| CAACCCTTGGGGACAGTGGA+TGG | 0.540084 | 1.3:+64245742 | MS.gene001733:CDS |
| TGCCCAGAAGAAGCACATAG+TGG | 0.542796 | 1.3:+64248582 | MS.gene001733:CDS |
| ACAGAAGATGACGGTGATGA+TGG | 0.543703 | 1.3:+64249197 | MS.gene001733:CDS |
| ATAAAGATCCCATAATATTG+TGG | 0.545906 | 1.3:-64242351 | None:intergenic |
| ACACCGTCTATCTCTGGAAG+TGG | 0.547187 | 1.3:+64246265 | MS.gene001733:CDS |
| AGCAAGAAATCAAGATTCGC+GGG | 0.549836 | 1.3:-64237104 | None:intergenic |
| TTCAGCATGCAATGATTGCA+TGG | 0.551343 | 1.3:-64248928 | None:intergenic |
| AAGATTCACATTTCTAGTAG+TGG | 0.553387 | 1.3:+64249053 | MS.gene001733:CDS |
| GCATTAGCTAATGGAGCCAT+GGG | 0.557242 | 1.3:+64244920 | MS.gene001733:CDS |
| GTTCCCACACGATCAGAAAA+CGG | 0.557307 | 1.3:-64246244 | None:intergenic |
| AATGACTTGTGGAGAATAAG+TGG | 0.557540 | 1.3:+64242512 | MS.gene001733:CDS |
| GTGTCTCTTAGAGAGGTTGT+TGG | 0.559932 | 1.3:-64236926 | None:intergenic |
| AGGCTAAAGAAGTGGCAGAA+AGG | 0.561343 | 1.3:+64248883 | MS.gene001733:intron |
| CACTCATGGCAGAACATCAT+CGG | 0.561431 | 1.3:+64245151 | MS.gene001733:CDS |
| GCCCAGAAGAAGCACATAGT+GGG | 0.563525 | 1.3:+64248583 | MS.gene001733:CDS |
| GCTGATAGGCGGGCATCAGA+AGG | 0.564887 | 1.3:+64248441 | MS.gene001733:CDS |
| CTTGTCAATACAGATGATGC+AGG | 0.565899 | 1.3:+64239783 | MS.gene001733:CDS |
| GGGAGATTGAAGCACAATGT+AGG | 0.566070 | 1.3:+64248604 | MS.gene001733:CDS |
| ATAACCATCCACTGTCCCCA+AGG | 0.568590 | 1.3:-64245746 | None:intergenic |
| GGTGGGTCGATATGGGGTGG+CGG | 0.570020 | 1.3:+64245690 | MS.gene001733:CDS |
| GCTCGATGACGAACAAGTTG+TGG | 0.571654 | 1.3:+64237124 | MS.gene001733:CDS |
| AATGGTGGTTGTGCTCAACT+AGG | 0.572409 | 1.3:+64249293 | MS.gene001733:CDS |
| GGTGTTTACTTTCAGGGACA+CGG | 0.575985 | 1.3:+64239753 | MS.gene001733:intron |
| TGATTCTGAACCACCTCCCA+TGG | 0.576170 | 1.3:-64244936 | None:intergenic |
| ACCTGCAGCAGTCTTTGTGT+TGG | 0.577544 | 1.3:-64241302 | None:intergenic |
| TTGTATTGTTCCTCTAGGCA+AGG | 0.577976 | 1.3:+64249125 | MS.gene001733:CDS |
| TTGGTAGTGATGGATGGGAT+AGG | 0.578391 | 1.3:+64245951 | MS.gene001733:intron |
| AAGTGATGATGAAGTGCTCC+AGG | 0.578623 | 1.3:+64242707 | MS.gene001733:intron |
| AACTTCTCAATGGTTGCTAG+TGG | 0.579962 | 1.3:-64240607 | None:intergenic |
| GACATTGAAAACAACCCAGC+GGG | 0.581375 | 1.3:+64249089 | MS.gene001733:CDS |
| GGGCATACTTGGCTGATAGG+CGG | 0.581465 | 1.3:+64248430 | MS.gene001733:CDS |
| TTGGTCTCATGATGAATATG+AGG | 0.582357 | 1.3:+64242960 | MS.gene001733:CDS |
| ACCTCTTTGAGCCATCGTCA+AGG | 0.583283 | 1.3:-64243441 | None:intergenic |
| CAGGCAGACGGCATCTTGCA+CGG | 0.585052 | 1.3:-64242740 | None:intergenic |
| CTTTGTGGCAACCTTGACGA+TGG | 0.587381 | 1.3:+64243430 | MS.gene001733:CDS |
| CAAGTCATTTGACAGGGTGA+AGG | 0.587579 | 1.3:-64242498 | None:intergenic |
| GAGAGGTTGTTGGTGTGGCA+CGG | 0.588469 | 1.3:-64236916 | None:intergenic |
| GGTTCTGTTTAGAGACATGG+TGG | 0.592082 | 1.3:+64245672 | MS.gene001733:intron |
| AGAGGACCGCTGTACTTCAG+TGG | 0.593225 | 1.3:-64248498 | None:intergenic |
| AGTTTGGATGTGCTCCCGCT+GGG | 0.595582 | 1.3:-64249103 | None:intergenic |
| GAGCAAGAAATCAAGATTCG+CGG | 0.598188 | 1.3:-64237105 | None:intergenic |
| CATATTATCGGACATTCAGA+GGG | 0.598656 | 1.3:+64246014 | MS.gene001733:CDS |
| GTATCAACCCTTGGGGACAG+TGG | 0.598834 | 1.3:+64245738 | MS.gene001733:CDS |
| CGAGAATTCATAGACACTCA+TGG | 0.599136 | 1.3:+64245137 | MS.gene001733:CDS |
| TCTTAGAGAGGTTGTTGGTG+TGG | 0.603090 | 1.3:-64236921 | None:intergenic |
| TTCATCATGAGACCAACTAA+AGG | 0.603931 | 1.3:-64242953 | None:intergenic |
| CCAAAGCAAATGGATAACTC+TGG | 0.604966 | 1.3:-64242559 | None:intergenic |
| GTCAGATGTGTCTCTTAGAG+AGG | 0.605249 | 1.3:-64236933 | None:intergenic |
| CTATGTGCATGAGATGGAGC+TGG | 0.608013 | 1.3:-64246370 | None:intergenic |
| GAGGTGTTCTTAAAAGTGGA+AGG | 0.610307 | 1.3:-64242389 | None:intergenic |
| CCTGAACTATGTGCATGAGA+TGG | 0.611367 | 1.3:-64246376 | None:intergenic |
| CGAAAGATGGAGGCTGCAGG+TGG | 0.612620 | 1.3:+64249267 | MS.gene001733:CDS |
| ACCAAGAAATTACAGGCAGA+CGG | 0.615128 | 1.3:-64242752 | None:intergenic |
| CATTATTAAGGCTTTCCTGG+TGG | 0.615141 | 1.3:+64247451 | MS.gene001733:intron |
| ATGGTAACAGGCTAAAGAAG+TGG | 0.615148 | 1.3:+64248875 | MS.gene001733:intron |
| GTCAAGGTTGCCACAAAGTG+CGG | 0.618707 | 1.3:-64243425 | None:intergenic |
| AAGGGCATCCCAGCTACCGG+TGG | 0.625691 | 1.3:-64236960 | None:intergenic |
| CATGGCAGAACATCATCGGA+TGG | 0.626026 | 1.3:+64245155 | MS.gene001733:CDS |
| AGACATGGTGGGTCGATATG+GGG | 0.626724 | 1.3:+64245684 | MS.gene001733:CDS |
| GACACATCTGACTCCTCCAC+CGG | 0.627294 | 1.3:+64236944 | MS.gene001733:CDS |
| TGCAGTCTAAGAAGTCCACC+AGG | 0.629081 | 1.3:-64247466 | None:intergenic |
| GCTGGCGCATTGGTGATGAT+GGG | 0.632732 | 1.3:-64246330 | None:intergenic |
| TCAATGGACATGATTGAAAG+TGG | 0.636766 | 1.3:+64242473 | MS.gene001733:CDS |
| CATGGTGGGTCGATATGGGG+TGG | 0.639162 | 1.3:+64245687 | MS.gene001733:CDS |
| CAATAATCGCACCATTGGAG+AGG | 0.640586 | 1.3:-64242408 | None:intergenic |
| ATATCGCTGATGCGAGACCA+AGG | 0.640867 | 1.3:+64244891 | MS.gene001733:CDS |
| TCTCCACAAGTCATTTGACA+GGG | 0.643859 | 1.3:-64242504 | None:intergenic |
| GTCTCATGATGAATATGAGG+AGG | 0.645065 | 1.3:+64242963 | MS.gene001733:CDS |
| GCTGGCGGTAATGTCCCTGA+TGG | 0.645642 | 1.3:-64246352 | None:intergenic |
| CCGTTTCGTACGAAAGATGG+AGG | 0.645973 | 1.3:+64249257 | MS.gene001733:CDS |
| CTTCTGGGCAAGCCCAACGA+AGG | 0.647320 | 1.3:-64248569 | None:intergenic |
| GATAGGCGGGCATCAGAAGG+AGG | 0.651664 | 1.3:+64248444 | MS.gene001733:CDS |
| TAACCATCCACTGTCCCCAA+GGG | 0.651855 | 1.3:-64245745 | None:intergenic |
| CAGCTATGAACACAGCGAAG+AGG | 0.653446 | 1.3:+64248979 | MS.gene001733:CDS |
| CCCAGAAGAAGCACATAGTG+GGG | 0.655565 | 1.3:+64248584 | MS.gene001733:CDS |
| GCCCAACGAAGGTGAAATTG+GGG | 0.657364 | 1.3:-64248558 | None:intergenic |
| TTTCCACTTCCAGAGATAGA+CGG | 0.662759 | 1.3:-64246268 | None:intergenic |
| ACCTTGACGATGGCTCAAAG+AGG | 0.665568 | 1.3:+64243440 | MS.gene001733:CDS |
| TTAGCTAATGGAGCCATGGG+AGG | 0.673806 | 1.3:+64244923 | MS.gene001733:CDS |
| TGCTTCAGTATCAACCCTTG+GGG | 0.678743 | 1.3:+64245731 | MS.gene001733:CDS |
| ACTACTTGATCCTTGCCTAG+AGG | 0.684942 | 1.3:-64249135 | None:intergenic |
| ATGTCTGTAACAGAAGATGA+CGG | 0.688061 | 1.3:+64249188 | MS.gene001733:CDS |
| GTTCTGTTTAGAGACATGGT+GGG | 0.696169 | 1.3:+64245673 | MS.gene001733:intron |
| TATGATCCACTGAAGTACAG+CGG | 0.717034 | 1.3:+64248492 | MS.gene001733:CDS |
| AAATTGGGGCCATATAGTCG+GGG | 0.720716 | 1.3:-64248544 | None:intergenic |
| TGTGCATGAGATGGAGCTGG+CGG | 0.759017 | 1.3:-64246367 | None:intergenic |
| ATTGTGTGTCACAACTACTG+CGG | 0.765787 | 1.3:+64247319 | MS.gene001733:CDS |
| TGACATTGAAAACAACCCAG+CGG | 0.773121 | 1.3:+64249088 | MS.gene001733:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 64236899 | 64249397 | 64236899 | ID=MS.gene001733 |
| chr1.3 | mRNA | 64236899 | 64249397 | 64236899 | ID=MS.gene001733.t1;Parent=MS.gene001733 |
| chr1.3 | exon | 64236899 | 64237000 | 64236899 | ID=MS.gene001733.t1.exon1;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64236899 | 64237000 | 64236899 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64237083 | 64237151 | 64237083 | ID=MS.gene001733.t1.exon2;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64237083 | 64237151 | 64237083 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64239768 | 64239842 | 64239768 | ID=MS.gene001733.t1.exon3;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64239768 | 64239842 | 64239768 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64240568 | 64240639 | 64240568 | ID=MS.gene001733.t1.exon4;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64240568 | 64240639 | 64240568 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64241260 | 64241329 | 64241260 | ID=MS.gene001733.t1.exon5;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64241260 | 64241329 | 64241260 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64241698 | 64241747 | 64241698 | ID=MS.gene001733.t1.exon6;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64241698 | 64241747 | 64241698 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64242311 | 64242600 | 64242311 | ID=MS.gene001733.t1.exon7;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64242311 | 64242600 | 64242311 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64242710 | 64242783 | 64242710 | ID=MS.gene001733.t1.exon8;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64242710 | 64242783 | 64242710 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64242921 | 64242984 | 64242921 | ID=MS.gene001733.t1.exon9;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64242921 | 64242984 | 64242921 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64243402 | 64243461 | 64243402 | ID=MS.gene001733.t1.exon10;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64243402 | 64243461 | 64243402 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64244883 | 64244982 | 64244883 | ID=MS.gene001733.t1.exon11;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64244883 | 64244982 | 64244883 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64245080 | 64245193 | 64245080 | ID=MS.gene001733.t1.exon12;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64245080 | 64245193 | 64245080 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64245684 | 64245853 | 64245684 | ID=MS.gene001733.t1.exon13;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64245684 | 64245853 | 64245684 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64245958 | 64246042 | 64245958 | ID=MS.gene001733.t1.exon14;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64245958 | 64246042 | 64245958 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64246208 | 64246423 | 64246208 | ID=MS.gene001733.t1.exon15;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64246208 | 64246423 | 64246208 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64247312 | 64247371 | 64247312 | ID=MS.gene001733.t1.exon16;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64247312 | 64247371 | 64247312 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64247461 | 64247525 | 64247461 | ID=MS.gene001733.t1.exon17;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64247461 | 64247525 | 64247461 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64248380 | 64248659 | 64248380 | ID=MS.gene001733.t1.exon18;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64248380 | 64248659 | 64248380 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| chr1.3 | exon | 64248885 | 64249397 | 64248885 | ID=MS.gene001733.t1.exon19;Parent=MS.gene001733.t1 |
| chr1.3 | CDS | 64248885 | 64249397 | 64248885 | ID=cds.MS.gene001733.t1;Parent=MS.gene001733.t1 |
| Gene Sequence |
| Protein sequence |
