Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005189.t1 | XP_013469029.1 | 85.4 | 632 | 92 | 0 | 1 | 632 | 1 | 632 | 1.10E-181 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005189.t1 | A0A072VN55 | 85.4 | 632 | 92 | 0 | 1 | 632 | 1 | 632 | 7.8e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005189.t1 | MTR_1g082215 | 94.620 | 632 | 34 | 0 | 1 | 632 | 1 | 632 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005189.t1 | AT5G27330 | 25.354 | 706 | 369 | 16 | 1 | 629 | 1 | 625 | 1.14e-35 | 142 |
| MS.gene005189.t1 | AT3G05130 | 24.571 | 700 | 368 | 18 | 1 | 619 | 1 | 621 | 1.07e-23 | 106 |
Find 132 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACCCAGATCACTGAATT+AGG | 0.168138 | 1.4:-66493838 | MS.gene005189:CDS |
| AGGGAGAAGATGAAGGATTT+AGG | 0.187545 | 1.4:-66493754 | MS.gene005189:CDS |
| AACAAATAAGGTGGAGAATT+TGG | 0.209500 | 1.4:-66492747 | MS.gene005189:CDS |
| GGGAGAAGATGAAGGATTTA+GGG | 0.269179 | 1.4:-66493753 | MS.gene005189:CDS |
| TGGTGGTGGTTGTGGGGTTA+AGG | 0.273734 | 1.4:+66494047 | None:intergenic |
| TGGTGGATGGTGGTGGTTGT+GGG | 0.274390 | 1.4:+66494040 | None:intergenic |
| TGTCTCAGGTTAATCATTAT+AGG | 0.291389 | 1.4:-66493060 | MS.gene005189:CDS |
| TGTTTATAGGACTCTGGATA+TGG | 0.296957 | 1.4:-66493275 | MS.gene005189:CDS |
| GCTTGAGAAGGACTGGGATT+TGG | 0.303984 | 1.4:-66493632 | MS.gene005189:CDS |
| TTGGTGGATGGTGGTGGTTG+TGG | 0.310014 | 1.4:+66494039 | None:intergenic |
| CACTGTTGCACATGTGTCTA+AGG | 0.328802 | 1.4:-66492477 | MS.gene005189:CDS |
| TGTGGTCAAGGGTTTGAGAT+TGG | 0.338282 | 1.4:+66494073 | None:intergenic |
| GTGGTCAAGGGTTTGAGATT+GGG | 0.338994 | 1.4:+66494074 | None:intergenic |
| ATATGACGAGGCAACAAATA+AGG | 0.371426 | 1.4:-66492759 | MS.gene005189:CDS |
| AGGGGAGGGATACTGTTTAT+AGG | 0.374876 | 1.4:-66493288 | MS.gene005189:CDS |
| AGACCCAGATCACTGAATTA+GGG | 0.375216 | 1.4:-66493837 | MS.gene005189:CDS |
| GGTGTTGGAAAATAGTAAAT+TGG | 0.379157 | 1.4:-66493356 | MS.gene005189:CDS |
| GTTGAAGGAGAAGATTGATT+TGG | 0.396255 | 1.4:-66493569 | MS.gene005189:CDS |
| CTGAATGCGGTTTCTGTGAT+TGG | 0.397932 | 1.4:+66493951 | None:intergenic |
| AATCAATTCAAAGCAAACTT+TGG | 0.409026 | 1.4:-66492513 | MS.gene005189:CDS |
| AGCTAGAGATGAGGTTGAGA+AGG | 0.410360 | 1.4:-66493203 | MS.gene005189:CDS |
| GAAACCCTAATTCAGTGATC+TGG | 0.411589 | 1.4:+66493833 | None:intergenic |
| GAAGGAGAAGAAAGAGGCTG+AGG | 0.417267 | 1.4:-66493542 | MS.gene005189:CDS |
| GGATATGGTTAAGAGAGAAT+TGG | 0.418650 | 1.4:-66493260 | MS.gene005189:CDS |
| TCTGCGTCTGATGCACATAA+AGG | 0.420247 | 1.4:-66492305 | MS.gene005189:CDS |
| GCAGTCACAAGTTGTGGAAA+TGG | 0.421287 | 1.4:-66492957 | MS.gene005189:CDS |
| TTAAGAGAGAATTGGAGAAT+AGG | 0.439435 | 1.4:-66493252 | MS.gene005189:CDS |
| AAAATTGTAGCTAGAGAGTC+TGG | 0.443169 | 1.4:-66493103 | MS.gene005189:CDS |
| GAAGGATTTAGGGTTGTGTC+TGG | 0.450014 | 1.4:-66493743 | MS.gene005189:CDS |
| GAAGATTGATTTGGTGGTGA+AGG | 0.452814 | 1.4:-66493560 | MS.gene005189:CDS |
| TTGAGGAGCTTGAGAAGGAC+TGG | 0.455210 | 1.4:-66493639 | MS.gene005189:CDS |
| TCATCATTGGTGGATGGTGG+TGG | 0.456751 | 1.4:+66494033 | None:intergenic |
| TAAATTGGTTGGTGAGAAGA+AGG | 0.457718 | 1.4:-66493341 | MS.gene005189:CDS |
| CTGAACAGATGGGTCATCAT+TGG | 0.459753 | 1.4:+66494020 | None:intergenic |
| TAAGAATGCTGTTGAGGAAG+TGG | 0.466160 | 1.4:-66492894 | MS.gene005189:CDS |
| GAGGTTGAGAAGGTTAAAGT+TGG | 0.473556 | 1.4:-66493193 | MS.gene005189:CDS |
| AGAGGAATGTTGAGAAGATG+AGG | 0.480560 | 1.4:-66493711 | MS.gene005189:CDS |
| GTATGAGGTTTCTGTTCAAA+GGG | 0.485446 | 1.4:-66493773 | MS.gene005189:CDS |
| AATTTGGAGTTGCAAGTTGT+GGG | 0.486287 | 1.4:-66492731 | MS.gene005189:CDS |
| ACGGAAACTGTTTGATGAAA+AGG | 0.486916 | 1.4:-66493680 | MS.gene005189:CDS |
| AAACAATGGATTACTGTCTC+AGG | 0.487360 | 1.4:-66493074 | MS.gene005189:CDS |
| GAATGTTGAGAAGATGAGGT+TGG | 0.491925 | 1.4:-66493707 | MS.gene005189:CDS |
| AGTATGAGGTTTCTGTTCAA+AGG | 0.495201 | 1.4:-66493774 | MS.gene005189:CDS |
| TCTTGGACTTGAGCTGCAGC+AGG | 0.495279 | 1.4:-66493485 | MS.gene005189:CDS |
| GCGTGGGAAGATTCGTGAAA+TGG | 0.496463 | 1.4:-66493419 | MS.gene005189:CDS |
| AAAAGGCTGAGAAAGAAAGA+AGG | 0.498100 | 1.4:-66493663 | MS.gene005189:CDS |
| TGTTCAAAGGGAGAAGATGA+AGG | 0.500438 | 1.4:-66493761 | MS.gene005189:CDS |
| TACTGAATTGAAGCTTAAGC+AGG | 0.508643 | 1.4:-66492798 | MS.gene005189:CDS |
| GAATTTGCAGTCACAAGTTG+TGG | 0.509082 | 1.4:-66492963 | MS.gene005189:CDS |
| GAAGGAGAAGATTGATTTGG+TGG | 0.509164 | 1.4:-66493566 | MS.gene005189:CDS |
| AGTAGCAGCAGAGGTTAAAC+CGG | 0.511423 | 1.4:+66492268 | None:intergenic |
| GAATTTGGAGTTGCAAGTTG+TGG | 0.512655 | 1.4:-66492732 | MS.gene005189:CDS |
| AGGTTGCTGTGGAGAAGGAA+AGG | 0.512829 | 1.4:-66493384 | MS.gene005189:CDS |
| TATTGAGGTTGCTGTGGAGA+AGG | 0.514158 | 1.4:-66493389 | MS.gene005189:CDS |
| TGAAATGGAGGAAACTATTG+AGG | 0.516918 | 1.4:-66493404 | MS.gene005189:CDS |
| CACATAAAGGTAAGAACTTG+TGG | 0.519666 | 1.4:-66492292 | MS.gene005189:CDS |
| TGTACTGAAGGGTGTTGTAG+AGG | 0.520552 | 1.4:-66493131 | MS.gene005189:CDS |
| TGAGCTGCAGCAGGTTAATG+AGG | 0.523686 | 1.4:-66493476 | MS.gene005189:CDS |
| AGCACAAATAGTAGCAGCAG+AGG | 0.529268 | 1.4:+66492259 | None:intergenic |
| TTGAGGAAGTGGAGCTTGAG+AGG | 0.534554 | 1.4:-66492883 | MS.gene005189:CDS |
| TTGAGAGTTTGACTGAGGGG+AGG | 0.535341 | 1.4:-66493303 | MS.gene005189:CDS |
| GGATACTGTTTATAGGACTC+TGG | 0.536791 | 1.4:-66493281 | MS.gene005189:CDS |
| GAAGGAAAGGGAAATGGTGT+TGG | 0.537048 | 1.4:-66493371 | MS.gene005189:CDS |
| CAAGAAAGCATTCAAAGCTA+AGG | 0.537974 | 1.4:-66492375 | MS.gene005189:CDS |
| AATGAGACAAACAAGGAGCT+AGG | 0.538433 | 1.4:-66492641 | MS.gene005189:CDS |
| AATGCGGTTTCTGTGATTGG+TGG | 0.539119 | 1.4:+66493954 | None:intergenic |
| AGTATTGAGAGTTTGACTGA+GGG | 0.540460 | 1.4:-66493307 | MS.gene005189:CDS |
| AAACCCTAATTCAGTGATCT+GGG | 0.540876 | 1.4:+66493834 | None:intergenic |
| TGAGAGTTTGACTGAGGGGA+GGG | 0.543135 | 1.4:-66493302 | MS.gene005189:CDS |
| AGAAGATGAGGTTGGATGCA+CGG | 0.544378 | 1.4:-66493699 | MS.gene005189:CDS |
| GGGTCATCATTGGTGGATGG+TGG | 0.544512 | 1.4:+66494030 | None:intergenic |
| CTTTGAGAAGAACGTTGTTG+AGG | 0.544572 | 1.4:+66493980 | None:intergenic |
| GAATAGCTCGCGGAATGAAG+AGG | 0.545341 | 1.4:-66493449 | MS.gene005189:CDS |
| AAACAAAGTGGAGGATTTGG+AGG | 0.546631 | 1.4:-66492828 | MS.gene005189:CDS |
| GGTGGATGGTGGTGGTTGTG+GGG | 0.547005 | 1.4:+66494041 | None:intergenic |
| GGTGGTGAAGGAGAAGAAAG+AGG | 0.547289 | 1.4:-66493548 | MS.gene005189:CDS |
| TGTGGAGAAGGAAAGGGAAA+TGG | 0.547710 | 1.4:-66493377 | MS.gene005189:CDS |
| GGTTGGTGAGAAGAAGGAGA+TGG | 0.555356 | 1.4:-66493335 | MS.gene005189:CDS |
| ATTCAAAGCTAAGGATGAGC+TGG | 0.556043 | 1.4:-66492366 | MS.gene005189:CDS |
| AATGAAGAGGCGGTGATGCG+TGG | 0.557344 | 1.4:-66493436 | MS.gene005189:CDS |
| AAAGGCTGAGAAAGAAAGAA+GGG | 0.557380 | 1.4:-66493662 | MS.gene005189:CDS |
| TGAGGAGCTTGAGAAGGACT+GGG | 0.558130 | 1.4:-66493638 | MS.gene005189:CDS |
| AAGGAGAAGAAAGAGGCTGA+GGG | 0.558642 | 1.4:-66493541 | MS.gene005189:CDS |
| CAAAGCTAACCACGCCGCCA+TGG | 0.560141 | 1.4:-66493920 | MS.gene005189:CDS |
| TGAAGGGTGTTGTAGAGGAG+TGG | 0.561592 | 1.4:-66493126 | MS.gene005189:CDS |
| TGAGAGGGATAACGTCAGAA+AGG | 0.563589 | 1.4:-66492867 | MS.gene005189:CDS |
| ATGAAGAGGCGGTGATGCGT+GGG | 0.564133 | 1.4:-66493435 | MS.gene005189:CDS |
| AACAGATGGGTCATCATTGG+TGG | 0.564931 | 1.4:+66494023 | None:intergenic |
| AAGTATTGAGAGTTTGACTG+AGG | 0.565456 | 1.4:-66493308 | MS.gene005189:CDS |
| TGAGAATGCTGAAGCTGAGT+TGG | 0.565780 | 1.4:-66492693 | MS.gene005189:CDS |
| GAAGGTGATTGATGAGTTGA+AGG | 0.567020 | 1.4:-66493584 | MS.gene005189:CDS |
| TGTGTCTGGAGAGTGAGAAG+AGG | 0.568416 | 1.4:-66493729 | MS.gene005189:CDS |
| TGCAGCTCAAAGAGAGTGCA+AGG | 0.569535 | 1.4:-66492564 | MS.gene005189:CDS |
| ATGTTATAAGAATGCTGTTG+AGG | 0.573650 | 1.4:-66492900 | MS.gene005189:CDS |
| GAGAGGGATAACGTCAGAAA+GGG | 0.575443 | 1.4:-66492866 | MS.gene005189:CDS |
| AAGGGTTGAGGAGCTTGAGA+AGG | 0.580524 | 1.4:-66493644 | MS.gene005189:CDS |
| TGAGAAAGAAAGAAGGGTTG+AGG | 0.586230 | 1.4:-66493656 | MS.gene005189:CDS |
| GGTTGCTGTGGAGAAGGAAA+GGG | 0.589431 | 1.4:-66493383 | MS.gene005189:CDS |
| AAAGGTAAGAACTTGTGGAC+CGG | 0.591726 | 1.4:-66492287 | MS.gene005189:CDS |
| AATGAAGTCGTTAAGTTGCA+AGG | 0.591972 | 1.4:-66493163 | MS.gene005189:CDS |
| GTATTGAGAGTTTGACTGAG+GGG | 0.596823 | 1.4:-66493306 | MS.gene005189:CDS |
| TTGGAAAATAGTAAATTGGT+TGG | 0.602091 | 1.4:-66493352 | MS.gene005189:CDS |
| GTCACAAGTTGTGGAAATGG+AGG | 0.603940 | 1.4:-66492954 | MS.gene005189:CDS |
| TAGGCAGCGTGAGGTTGATG+AGG | 0.607173 | 1.4:-66493233 | MS.gene005189:CDS |
| CAAAGCTAAGGATGAGCTGG+TGG | 0.611150 | 1.4:-66492363 | MS.gene005189:CDS |
| TGAGGGTGTGAATAGTACTC+AGG | 0.615912 | 1.4:-66493524 | MS.gene005189:CDS |
| CTTCAACATCCATGGCGGCG+TGG | 0.620836 | 1.4:+66493911 | None:intergenic |
| TGAGGAAGTGGAGCTTGAGA+GGG | 0.621802 | 1.4:-66492882 | MS.gene005189:CDS |
| TTGACTGCATATGTTGCTAA+AGG | 0.622390 | 1.4:-66492230 | MS.gene005189:CDS |
| AGGTGAAATAAGTGTACTGA+AGG | 0.625603 | 1.4:-66493143 | MS.gene005189:CDS |
| GTTGCAAGTTGTGGGACTGA+AGG | 0.629045 | 1.4:-66492723 | MS.gene005189:CDS |
| GATGGGTCATCATTGGTGGA+TGG | 0.631583 | 1.4:+66494027 | None:intergenic |
| CAACAGTAAGAAGTTTGATG+AGG | 0.631997 | 1.4:-66493002 | MS.gene005189:CDS |
| TGACGAGGCAACAAATAAGG+TGG | 0.639359 | 1.4:-66492756 | MS.gene005189:CDS |
| ACTCTCTTTGAGCTGCAATG+AGG | 0.642172 | 1.4:+66492570 | None:intergenic |
| CTTTGAGAAGAAGCTGAATG+CGG | 0.642555 | 1.4:+66493938 | None:intergenic |
| TGGGAAGATTCGTGAAATGG+AGG | 0.643009 | 1.4:-66493416 | MS.gene005189:CDS |
| GGAAACTATTGAGGTTGCTG+TGG | 0.643834 | 1.4:-66493395 | MS.gene005189:CDS |
| TGCTGAAGCTGAGTTGGTCA+AGG | 0.646705 | 1.4:-66492687 | MS.gene005189:CDS |
| GGCGAGAAGAGCTAGAGATG+AGG | 0.648893 | 1.4:-66493212 | MS.gene005189:CDS |
| CGTTAATCAAAACATCTATG+CGG | 0.652889 | 1.4:+66492615 | None:intergenic |
| CATCATGAAAAGATATGACG+AGG | 0.665707 | 1.4:-66492771 | MS.gene005189:CDS |
| ACATGCTTCTTCTCACCGCG+AGG | 0.668840 | 1.4:+66492437 | None:intergenic |
| GGGTGTGAATAGTACTCAGG+AGG | 0.677679 | 1.4:-66493521 | MS.gene005189:CDS |
| TCGCGGTGAGAAGAAGCATG+TGG | 0.678181 | 1.4:-66492435 | MS.gene005189:CDS |
| TTTCTCTTCAACATCCATGG+CGG | 0.680764 | 1.4:+66493906 | None:intergenic |
| GAAGATGAATGAGACAAACA+AGG | 0.682202 | 1.4:-66492648 | MS.gene005189:CDS |
| TAGCTCGCGGAATGAAGAGG+CGG | 0.684996 | 1.4:-66493446 | MS.gene005189:CDS |
| ATTGGAGAATAGGCAGCGTG+AGG | 0.687102 | 1.4:-66493242 | MS.gene005189:CDS |
| GGTGAAATAAGTGTACTGAA+GGG | 0.705436 | 1.4:-66493142 | MS.gene005189:CDS |
| ACATGTGTCTAAGGAAAGTG+TGG | 0.709564 | 1.4:-66492468 | MS.gene005189:CDS |
| AGTGTGGAAGTGATTCCTCG+CGG | 0.788854 | 1.4:-66492452 | MS.gene005189:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATCAATTCAAAGCAAACTT+TGG | - | chr1.4:66493809-66493828 | MS.gene005189:CDS | 25.0% |
| ! | TGATGAAAAGAAAAACAAAG+TGG | - | chr1.4:66493482-66493501 | MS.gene005189:CDS | 25.0% |
| ! | TTGGAAAATAGTAAATTGGT+TGG | - | chr1.4:66492970-66492989 | MS.gene005189:CDS | 25.0% |
| !!! | AGATGTTTTGATTAACGAAA+AGG | - | chr1.4:66493713-66493732 | MS.gene005189:CDS | 25.0% |
| AACAAATAAGGTGGAGAATT+TGG | - | chr1.4:66493575-66493594 | MS.gene005189:CDS | 30.0% | |
| ATGTTATAAGAATGCTGTTG+AGG | - | chr1.4:66493422-66493441 | MS.gene005189:CDS | 30.0% | |
| CGTTAATCAAAACATCTATG+CGG | + | chr1.4:66493710-66493729 | None:intergenic | 30.0% | |
| GAAAAATGAGATTGAGTATG+AGG | - | chr1.4:66492534-66492553 | MS.gene005189:CDS | 30.0% | |
| TGAAAAGAAAAACAAAGTGG+AGG | - | chr1.4:66493485-66493504 | MS.gene005189:CDS | 30.0% | |
| TGTCTCAGGTTAATCATTAT+AGG | - | chr1.4:66493262-66493281 | MS.gene005189:CDS | 30.0% | |
| TTAAGAGAGAATTGGAGAAT+AGG | - | chr1.4:66493070-66493089 | MS.gene005189:CDS | 30.0% | |
| ! | AGATTTTGAATCTGAACAGA+TGG | + | chr1.4:66492316-66492335 | None:intergenic | 30.0% |
| ! | ATTTTTCTCTTCAACATCCA+TGG | + | chr1.4:66492422-66492441 | None:intergenic | 30.0% |
| ! | CAAAGAAAACATCGTTTTGA+AGG | + | chr1.4:66492456-66492475 | None:intergenic | 30.0% |
| ! | GATTTTGAATCTGAACAGAT+GGG | + | chr1.4:66492315-66492334 | None:intergenic | 30.0% |
| ! | GGTATTTGTTCCTTTCTTTT+TGG | + | chr1.4:66492230-66492249 | None:intergenic | 30.0% |
| ! | GGTGTTGGAAAATAGTAAAT+TGG | - | chr1.4:66492966-66492985 | MS.gene005189:CDS | 30.0% |
| ! | TGTGAAGAAGTCAATTTTGT+CGG | - | chr1.4:66492714-66492733 | MS.gene005189:CDS | 30.0% |
| AAAAGGCTGAGAAAGAAAGA+AGG | - | chr1.4:66492659-66492678 | MS.gene005189:CDS | 35.0% | |
| AAAATTGTAGCTAGAGAGTC+TGG | - | chr1.4:66493219-66493238 | MS.gene005189:CDS | 35.0% | |
| AAACCCTAATTCAGTGATCT+GGG | + | chr1.4:66492491-66492510 | None:intergenic | 35.0% | |
| AAAGGCTGAGAAAGAAAGAA+GGG | - | chr1.4:66492660-66492679 | MS.gene005189:CDS | 35.0% | |
| ACGGAAACTGTTTGATGAAA+AGG | - | chr1.4:66492642-66492661 | MS.gene005189:CDS | 35.0% | |
| AGGTGAAATAAGTGTACTGA+AGG | - | chr1.4:66493179-66493198 | MS.gene005189:CDS | 35.0% | |
| AGTATGAGGTTTCTGTTCAA+AGG | - | chr1.4:66492548-66492567 | MS.gene005189:CDS | 35.0% | |
| ATATGACGAGGCAACAAATA+AGG | - | chr1.4:66493563-66493582 | MS.gene005189:CDS | 35.0% | |
| CAACAGTAAGAAGTTTGATG+AGG | - | chr1.4:66493320-66493339 | MS.gene005189:CDS | 35.0% | |
| CACATAAAGGTAAGAACTTG+TGG | - | chr1.4:66494030-66494049 | MS.gene005189:CDS | 35.0% | |
| CATCATGAAAAGATATGACG+AGG | - | chr1.4:66493551-66493570 | MS.gene005189:CDS | 35.0% | |
| GAAAAACAAAGTGGAGGATT+TGG | - | chr1.4:66493491-66493510 | MS.gene005189:CDS | 35.0% | |
| GAAGATGAATGAGACAAACA+AGG | - | chr1.4:66493674-66493693 | MS.gene005189:CDS | 35.0% | |
| GGATATGGTTAAGAGAGAAT+TGG | - | chr1.4:66493062-66493081 | MS.gene005189:CDS | 35.0% | |
| GGTGAAATAAGTGTACTGAA+GGG | - | chr1.4:66493180-66493199 | MS.gene005189:CDS | 35.0% | |
| GTATGAGGTTTCTGTTCAAA+GGG | - | chr1.4:66492549-66492568 | MS.gene005189:CDS | 35.0% | |
| GTTGAAGGAGAAGATTGATT+TGG | - | chr1.4:66492753-66492772 | MS.gene005189:CDS | 35.0% | |
| TACTGAATTGAAGCTTAAGC+AGG | - | chr1.4:66493524-66493543 | MS.gene005189:CDS | 35.0% | |
| TGAAATGGAGGAAACTATTG+AGG | - | chr1.4:66492918-66492937 | MS.gene005189:CDS | 35.0% | |
| TGATGAGGAGAAAAAGAAAG+TGG | - | chr1.4:66493335-66493354 | MS.gene005189:CDS | 35.0% | |
| TGTTTATAGGACTCTGGATA+TGG | - | chr1.4:66493047-66493066 | MS.gene005189:CDS | 35.0% | |
| TTGACTGCATATGTTGCTAA+AGG | - | chr1.4:66494092-66494111 | MS.gene005189:CDS | 35.0% | |
| ! | AATGAAGTCGTTAAGTTGCA+AGG | - | chr1.4:66493159-66493178 | MS.gene005189:CDS | 35.0% |
| ! | AATTTGGAGTTGCAAGTTGT+GGG | - | chr1.4:66493591-66493610 | MS.gene005189:CDS | 35.0% |
| ! | AGTATTGAGAGTTTGACTGA+GGG | - | chr1.4:66493015-66493034 | MS.gene005189:CDS | 35.0% |
| ! | CTCGTCATATCTTTTCATGA+TGG | + | chr1.4:66493553-66493572 | None:intergenic | 35.0% |
| ! | GAGGTGAAGATTTTCAATCT+TGG | - | chr1.4:66492820-66492839 | MS.gene005189:CDS | 35.0% |
| !! | AAACAATGGATTACTGTCTC+AGG | - | chr1.4:66493248-66493267 | MS.gene005189:CDS | 35.0% |
| !! | AAGTATTGAGAGTTTGACTG+AGG | - | chr1.4:66493014-66493033 | MS.gene005189:CDS | 35.0% |
| !! | CAAGAAAGCATTCAAAGCTA+AGG | - | chr1.4:66493947-66493966 | MS.gene005189:CDS | 35.0% |
| !! | TAAATTGGTTGGTGAGAAGA+AGG | - | chr1.4:66492981-66493000 | MS.gene005189:CDS | 35.0% |
| AAACAAAGTGGAGGATTTGG+AGG | - | chr1.4:66493494-66493513 | MS.gene005189:CDS | 40.0% | |
| AAAGGTAAGAACTTGTGGAC+CGG | - | chr1.4:66494035-66494054 | MS.gene005189:CDS | 40.0% | |
| AAGACCCAGATCACTGAATT+AGG | - | chr1.4:66492484-66492503 | MS.gene005189:CDS | 40.0% | |
| AATGAGACAAACAAGGAGCT+AGG | - | chr1.4:66493681-66493700 | MS.gene005189:CDS | 40.0% | |
| ACATGTGTCTAAGGAAAGTG+TGG | - | chr1.4:66493854-66493873 | MS.gene005189:CDS | 40.0% | |
| AGACCCAGATCACTGAATTA+GGG | - | chr1.4:66492485-66492504 | MS.gene005189:CDS | 40.0% | |
| AGAGGAATGTTGAGAAGATG+AGG | - | chr1.4:66492611-66492630 | MS.gene005189:CDS | 40.0% | |
| AGGGAGAAGATGAAGGATTT+AGG | - | chr1.4:66492568-66492587 | MS.gene005189:CDS | 40.0% | |
| ATTCAAAGCTAAGGATGAGC+TGG | - | chr1.4:66493956-66493975 | MS.gene005189:CDS | 40.0% | |
| GAAACCCTAATTCAGTGATC+TGG | + | chr1.4:66492492-66492511 | None:intergenic | 40.0% | |
| GAATGTTGAGAAGATGAGGT+TGG | - | chr1.4:66492615-66492634 | MS.gene005189:CDS | 40.0% | |
| GAATTTGCAGTCACAAGTTG+TGG | - | chr1.4:66493359-66493378 | MS.gene005189:CDS | 40.0% | |
| GAGGTTGAGAAGGTTAAAGT+TGG | - | chr1.4:66493129-66493148 | MS.gene005189:CDS | 40.0% | |
| GAGTCTGGAGAGAAAAACAA+TGG | - | chr1.4:66493234-66493253 | MS.gene005189:CDS | 40.0% | |
| GGATACTGTTTATAGGACTC+TGG | - | chr1.4:66493041-66493060 | MS.gene005189:CDS | 40.0% | |
| GGGAGAAGATGAAGGATTTA+GGG | - | chr1.4:66492569-66492588 | MS.gene005189:CDS | 40.0% | |
| GTATTGAGAGTTTGACTGAG+GGG | - | chr1.4:66493016-66493035 | MS.gene005189:CDS | 40.0% | |
| TAAGAATGCTGTTGAGGAAG+TGG | - | chr1.4:66493428-66493447 | MS.gene005189:CDS | 40.0% | |
| TGAAGAGAAAAATCTCGCCT+TGG | - | chr1.4:66492429-66492448 | MS.gene005189:CDS | 40.0% | |
| TGAGAAAGAAAGAAGGGTTG+AGG | - | chr1.4:66492666-66492685 | MS.gene005189:CDS | 40.0% | |
| TGTTCAAAGGGAGAAGATGA+AGG | - | chr1.4:66492561-66492580 | MS.gene005189:CDS | 40.0% | |
| TTTCTCTTCAACATCCATGG+CGG | + | chr1.4:66492419-66492438 | None:intergenic | 40.0% | |
| ! | CTTTGAGAAGAACGTTGTTG+AGG | + | chr1.4:66492345-66492364 | None:intergenic | 40.0% |
| ! | CTTTGAGAAGAAGCTGAATG+CGG | + | chr1.4:66492387-66492406 | None:intergenic | 40.0% |
| ! | GAAGGTGATTGATGAGTTGA+AGG | - | chr1.4:66492738-66492757 | MS.gene005189:CDS | 40.0% |
| ! | GAAGTCAATTTTGTCGGTGA+AGG | - | chr1.4:66492720-66492739 | MS.gene005189:CDS | 40.0% |
| ! | GAATTTGGAGTTGCAAGTTG+TGG | - | chr1.4:66493590-66493609 | MS.gene005189:CDS | 40.0% |
| ! | GTCTTTTGCTGAAGAACTTG+AGG | - | chr1.4:66493920-66493939 | MS.gene005189:CDS | 40.0% |
| !! | GAAGATTGATTTGGTGGTGA+AGG | - | chr1.4:66492762-66492781 | MS.gene005189:CDS | 40.0% |
| !! | GAAGGAGAAGATTGATTTGG+TGG | - | chr1.4:66492756-66492775 | MS.gene005189:CDS | 40.0% |
| !! | GGTTAAGGTTTTGTGGTCAA+GGG | + | chr1.4:66492263-66492282 | None:intergenic | 40.0% |
| !!! | AACATCGTTTTGAAGGTCCA+AGG | + | chr1.4:66492449-66492468 | None:intergenic | 40.0% |
| !!! | ATGAGGTTTTGAATAGCTCG+CGG | - | chr1.4:66492863-66492882 | MS.gene005189:CDS | 40.0% |
| AACAGATGGGTCATCATTGG+TGG | + | chr1.4:66492302-66492321 | None:intergenic | 45.0% | |
| AAGGAGAAGAAAGAGGCTGA+GGG | - | chr1.4:66492781-66492800 | MS.gene005189:CDS | 45.0% | |
| AATGCGGTTTCTGTGATTGG+TGG | + | chr1.4:66492371-66492390 | None:intergenic | 45.0% | |
| ACTCTCTTTGAGCTGCAATG+AGG | + | chr1.4:66493755-66493774 | None:intergenic | 45.0% | |
| AGAAGATGAGGTTGGATGCA+CGG | - | chr1.4:66492623-66492642 | MS.gene005189:CDS | 45.0% | |
| AGCACAAATAGTAGCAGCAG+AGG | + | chr1.4:66494066-66494085 | None:intergenic | 45.0% | |
| AGCTAGAGATGAGGTTGAGA+AGG | - | chr1.4:66493119-66493138 | MS.gene005189:CDS | 45.0% | |
| AGGGGAGGGATACTGTTTAT+AGG | - | chr1.4:66493034-66493053 | MS.gene005189:CDS | 45.0% | |
| AGTAGCAGCAGAGGTTAAAC+CGG | + | chr1.4:66494057-66494076 | None:intergenic | 45.0% | |
| CACTGTTGCACATGTGTCTA+AGG | - | chr1.4:66493845-66493864 | MS.gene005189:CDS | 45.0% | |
| CTGAACAGATGGGTCATCAT+TGG | + | chr1.4:66492305-66492324 | None:intergenic | 45.0% | |
| CTGAATGCGGTTTCTGTGAT+TGG | + | chr1.4:66492374-66492393 | None:intergenic | 45.0% | |
| GAAGGAAAGGGAAATGGTGT+TGG | - | chr1.4:66492951-66492970 | MS.gene005189:CDS | 45.0% | |
| GAGAGGGATAACGTCAGAAA+GGG | - | chr1.4:66493456-66493475 | MS.gene005189:CDS | 45.0% | |
| GCAGTCACAAGTTGTGGAAA+TGG | - | chr1.4:66493365-66493384 | MS.gene005189:CDS | 45.0% | |
| GGAAACTATTGAGGTTGCTG+TGG | - | chr1.4:66492927-66492946 | MS.gene005189:CDS | 45.0% | |
| GTCACAAGTTGTGGAAATGG+AGG | - | chr1.4:66493368-66493387 | MS.gene005189:CDS | 45.0% | |
| TATTGAGGTTGCTGTGGAGA+AGG | - | chr1.4:66492933-66492952 | MS.gene005189:CDS | 45.0% | |
| TCTGCGTCTGATGCACATAA+AGG | - | chr1.4:66494017-66494036 | MS.gene005189:CDS | 45.0% | |
| TGACGAGGCAACAAATAAGG+TGG | - | chr1.4:66493566-66493585 | MS.gene005189:CDS | 45.0% | |
| TGAGAATGCTGAAGCTGAGT+TGG | - | chr1.4:66493629-66493648 | MS.gene005189:CDS | 45.0% | |
| TGAGAGGGATAACGTCAGAA+AGG | - | chr1.4:66493455-66493474 | MS.gene005189:CDS | 45.0% | |
| TGGGAAGATTCGTGAAATGG+AGG | - | chr1.4:66492906-66492925 | MS.gene005189:CDS | 45.0% | |
| TGTGGAGAAGGAAAGGGAAA+TGG | - | chr1.4:66492945-66492964 | MS.gene005189:CDS | 45.0% | |
| ! | GAAGGATTTAGGGTTGTGTC+TGG | - | chr1.4:66492579-66492598 | MS.gene005189:CDS | 45.0% |
| ! | GTGGTCAAGGGTTTGAGATT+GGG | + | chr1.4:66492251-66492270 | None:intergenic | 45.0% |
| ! | GTTGTGGGGTTAAGGTTTTG+TGG | + | chr1.4:66492270-66492289 | None:intergenic | 45.0% |
| ! | TGAGGGTGTGAATAGTACTC+AGG | - | chr1.4:66492798-66492817 | MS.gene005189:CDS | 45.0% |
| ! | TGTGGTCAAGGGTTTGAGAT+TGG | + | chr1.4:66492252-66492271 | None:intergenic | 45.0% |
| !! | GGGTTAAGGTTTTGTGGTCA+AGG | + | chr1.4:66492264-66492283 | None:intergenic | 45.0% |
| !! | TGTACTGAAGGGTGTTGTAG+AGG | - | chr1.4:66493191-66493210 | MS.gene005189:CDS | 45.0% |
| AAGGGTTGAGGAGCTTGAGA+AGG | - | chr1.4:66492678-66492697 | MS.gene005189:CDS | 50.0% | |
| AGGTTGCTGTGGAGAAGGAA+AGG | - | chr1.4:66492938-66492957 | MS.gene005189:CDS | 50.0% | |
| AGTGTGGAAGTGATTCCTCG+CGG | - | chr1.4:66493870-66493889 | MS.gene005189:CDS | 50.0% | |
| ATTGGAGAATAGGCAGCGTG+AGG | - | chr1.4:66493080-66493099 | MS.gene005189:CDS | 50.0% | |
| CAAAGCTAAGGATGAGCTGG+TGG | - | chr1.4:66493959-66493978 | MS.gene005189:CDS | 50.0% | |
| GAAGGAGAAGAAAGAGGCTG+AGG | - | chr1.4:66492780-66492799 | MS.gene005189:CDS | 50.0% | |
| GAATAGCTCGCGGAATGAAG+AGG | - | chr1.4:66492873-66492892 | MS.gene005189:CDS | 50.0% | |
| GATGGGTCATCATTGGTGGA+TGG | + | chr1.4:66492298-66492317 | None:intergenic | 50.0% | |
| GCGTGGGAAGATTCGTGAAA+TGG | - | chr1.4:66492903-66492922 | MS.gene005189:CDS | 50.0% | |
| GCTTGAGAAGGACTGGGATT+TGG | - | chr1.4:66492690-66492709 | MS.gene005189:CDS | 50.0% | |
| GGGTGTGAATAGTACTCAGG+AGG | - | chr1.4:66492801-66492820 | MS.gene005189:CDS | 50.0% | |
| GGTGGTGAAGGAGAAGAAAG+AGG | - | chr1.4:66492774-66492793 | MS.gene005189:CDS | 50.0% | |
| GGTTGCTGTGGAGAAGGAAA+GGG | - | chr1.4:66492939-66492958 | MS.gene005189:CDS | 50.0% | |
| GTTGCAAGTTGTGGGACTGA+AGG | - | chr1.4:66493599-66493618 | MS.gene005189:CDS | 50.0% | |
| TGAGAGTTTGACTGAGGGGA+GGG | - | chr1.4:66493020-66493039 | MS.gene005189:CDS | 50.0% | |
| TGAGCTGCAGCAGGTTAATG+AGG | - | chr1.4:66492846-66492865 | MS.gene005189:CDS | 50.0% | |
| TGAGGAAGTGGAGCTTGAGA+GGG | - | chr1.4:66493440-66493459 | MS.gene005189:CDS | 50.0% | |
| TGAGGAGCTTGAGAAGGACT+GGG | - | chr1.4:66492684-66492703 | MS.gene005189:CDS | 50.0% | |
| TGTGTCTGGAGAGTGAGAAG+AGG | - | chr1.4:66492593-66492612 | MS.gene005189:CDS | 50.0% | |
| TTGAGAGTTTGACTGAGGGG+AGG | - | chr1.4:66493019-66493038 | MS.gene005189:CDS | 50.0% | |
| TTGAGGAAGTGGAGCTTGAG+AGG | - | chr1.4:66493439-66493458 | MS.gene005189:CDS | 50.0% | |
| TTGAGGAGCTTGAGAAGGAC+TGG | - | chr1.4:66492683-66492702 | MS.gene005189:CDS | 50.0% | |
| ! | TCATCATTGGTGGATGGTGG+TGG | + | chr1.4:66492292-66492311 | None:intergenic | 50.0% |
| ! | TGCAGCTCAAAGAGAGTGCA+AGG | - | chr1.4:66493758-66493777 | MS.gene005189:CDS | 50.0% |
| !! | GGTTGGTGAGAAGAAGGAGA+TGG | - | chr1.4:66492987-66493006 | MS.gene005189:CDS | 50.0% |
| !! | TGAAGGGTGTTGTAGAGGAG+TGG | - | chr1.4:66493196-66493215 | MS.gene005189:CDS | 50.0% |
| !! | TGCTGAAGCTGAGTTGGTCA+AGG | - | chr1.4:66493635-66493654 | MS.gene005189:CDS | 50.0% |
| AATGAAGAGGCGGTGATGCG+TGG | - | chr1.4:66492886-66492905 | MS.gene005189:CDS | 55.0% | |
| ACATGCTTCTTCTCACCGCG+AGG | + | chr1.4:66493888-66493907 | None:intergenic | 55.0% | |
| ATGAAGAGGCGGTGATGCGT+GGG | - | chr1.4:66492887-66492906 | MS.gene005189:CDS | 55.0% | |
| GGCGAGAAGAGCTAGAGATG+AGG | - | chr1.4:66493110-66493129 | MS.gene005189:CDS | 55.0% | |
| TAGCTCGCGGAATGAAGAGG+CGG | - | chr1.4:66492876-66492895 | MS.gene005189:CDS | 55.0% | |
| TCTTGGACTTGAGCTGCAGC+AGG | - | chr1.4:66492837-66492856 | MS.gene005189:CDS | 55.0% | |
| ! | GGGTCATCATTGGTGGATGG+TGG | + | chr1.4:66492295-66492314 | None:intergenic | 55.0% |
| ! | TCGCGGTGAGAAGAAGCATG+TGG | - | chr1.4:66493887-66493906 | MS.gene005189:CDS | 55.0% |
| !! | TAGGCAGCGTGAGGTTGATG+AGG | - | chr1.4:66493089-66493108 | MS.gene005189:CDS | 55.0% |
| !! | TGGTGGATGGTGGTGGTTGT+GGG | + | chr1.4:66492285-66492304 | None:intergenic | 55.0% |
| !! | TGGTGGTGGTTGTGGGGTTA+AGG | + | chr1.4:66492278-66492297 | None:intergenic | 55.0% |
| !! | TTGGTGGATGGTGGTGGTTG+TGG | + | chr1.4:66492286-66492305 | None:intergenic | 55.0% |
| CAAAGCTAACCACGCCGCCA+TGG | - | chr1.4:66492402-66492421 | MS.gene005189:CDS | 60.0% | |
| CTTCAACATCCATGGCGGCG+TGG | + | chr1.4:66492414-66492433 | None:intergenic | 60.0% | |
| !! | GGTGGATGGTGGTGGTTGTG+GGG | + | chr1.4:66492284-66492303 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 66492223 | 66494121 | 66492223 | ID=MS.gene005189 |
| chr1.4 | mRNA | 66492223 | 66494121 | 66492223 | ID=MS.gene005189.t1;Parent=MS.gene005189 |
| chr1.4 | exon | 66492223 | 66494121 | 66492223 | ID=MS.gene005189.t1.exon1;Parent=MS.gene005189.t1 |
| chr1.4 | CDS | 66492223 | 66494121 | 66492223 | ID=cds.MS.gene005189.t1;Parent=MS.gene005189.t1 |
| Gene Sequence |
| Protein sequence |
