AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002078.t1 MTR_7g088160 38.730 315 154 6 92 369 74 386 2.65e-62 204
MS.gene002078.t1 MTR_7g107340 40.476 294 137 5 84 369 69 332 4.56e-55 184
MS.gene002078.t1 MTR_4g063670 40.850 306 148 9 91 369 18 317 1.08e-52 177
MS.gene002078.t1 MTR_0867s0010 41.176 306 143 9 93 369 20 317 5.06e-49 168
MS.gene002078.t1 MTR_7g114170 36.390 349 140 9 35 369 7 287 4.06e-40 144
MS.gene002078.t1 MTR_4g083510 37.248 298 155 8 99 369 26 318 1.01e-39 144
MS.gene002078.t1 MTR_3g069460 46.711 152 78 3 94 242 21 172 8.75e-35 126
MS.gene002078.t1 MTR_6g081150 37.712 236 76 8 86 321 12 176 1.90e-32 120
MS.gene002078.t1 MTR_1g051185 47.482 139 69 3 142 278 45 181 1.52e-31 120
MS.gene002078.t1 MTR_7g461350 24.375 160 116 1 88 242 92 251 1.88e-15 77.4
MS.gene002078.t1 MTR_6g016670 24.375 160 116 1 88 242 92 251 1.88e-15 77.4
MS.gene002078.t1 MTR_3g464310 24.375 160 116 1 88 242 92 251 1.88e-15 77.4
MS.gene002078.t1 MTR_3g464170 23.750 160 117 1 88 242 92 251 3.19e-15 76.6
MS.gene002078.t1 MTR_1g100375 23.750 160 117 1 88 242 92 251 3.19e-15 76.6
MS.gene002078.t1 MTR_3g450670 23.718 156 114 1 92 242 92 247 3.71e-15 76.3
MS.gene002078.t1 MTR_1g471070 23.718 156 114 1 92 242 92 247 3.71e-15 76.3
MS.gene002078.t1 MTR_2g022120 23.832 214 129 3 92 292 116 308 3.99e-15 76.6
MS.gene002078.t1 MTR_6g051405 23.750 160 117 1 88 242 92 251 4.17e-15 76.3
MS.gene002078.t1 MTR_1g106885 23.832 214 129 3 92 292 113 305 4.19e-15 76.6
MS.gene002078.t1 MTR_5g077245 24.590 183 125 2 92 261 105 287 6.99e-15 75.9
MS.gene002078.t1 MTR_2g072860 26.250 160 113 2 88 242 24 183 9.00e-15 74.7
MS.gene002078.t1 MTR_8g015740 40.764 157 63 8 1 154 1 130 1.27e-14 70.5
MS.gene002078.t1 MTR_6g453050 24.590 183 125 3 92 261 52 234 1.52e-14 74.3
MS.gene002078.t1 MTR_5g066280 24.126 286 170 6 92 352 52 315 1.82e-14 73.9
MS.gene002078.t1 MTR_4g026120 23.832 214 129 3 92 292 52 244 2.09e-14 73.9
MS.gene002078.t1 MTR_4g036435 23.832 214 129 3 92 292 52 244 2.09e-14 73.9
MS.gene002078.t1 MTR_3g067785 23.832 214 129 3 92 292 52 244 2.85e-14 73.6
MS.gene002078.t1 MTR_4g013220 23.832 214 129 3 92 292 52 244 2.93e-14 73.6
MS.gene002078.t1 MTR_6g092533 24.294 177 126 2 92 260 116 292 3.27e-14 73.6
MS.gene002078.t1 MTR_4g046740 36.522 115 62 3 262 369 24 134 1.58e-13 67.4
MS.gene002078.t1 MTR_2g023560 58.824 51 21 0 118 168 57 107 1.08e-12 64.7
MS.gene002078.t1 MTR_1g075060 26.230 183 108 5 92 261 103 271 3.44e-12 67.4
MS.gene002078.t1 MTR_7g083520 24.503 151 107 2 97 240 31 181 3.00e-11 63.9
MS.gene002078.t1 MTR_7g062380 21.591 176 123 2 116 291 18 178 8.68e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002078.t1 AT5G41220 38.500 200 111 5 115 304 264 461 1.94e-27 114
MS.gene002078.t1 AT5G41220 38.500 200 111 5 115 304 214 411 2.14e-27 113
MS.gene002078.t1 AT5G41220 38.500 200 111 5 115 304 206 403 2.21e-27 113
MS.gene002078.t1 AT5G41240 35.500 200 116 5 115 303 264 461 6.57e-25 106
MS.gene002078.t1 AT3G47680 34.375 224 117 8 118 326 44 252 1.34e-22 97.1
MS.gene002078.t1 AT1G66235 28.571 126 87 2 124 246 7 132 1.13e-12 68.2

Find 73 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTTCTCCCTTCCATTT+AGG 0.213354 2.3:-75472744 None:intergenic
AACTCCCACGATCGGATCTT+TGG 0.301608 2.3:-75472445 None:intergenic
GAACCGTCACCGGCAGTTAA+TGG 0.321759 2.3:-75472204 None:intergenic
TGTTGAAGGATGAACCTAAA+TGG 0.353625 2.3:+75472730 MS.gene002078:CDS
GAAGTATTTCAAGAGAAGTT+AGG 0.386733 2.3:+75473127 MS.gene002078:CDS
TTTGAGAACCATCACCGATT+GGG 0.409235 2.3:-75472071 None:intergenic
TGTTGAATAGACATTGTCAT+TGG 0.417954 2.3:+75472574 MS.gene002078:CDS
GTTGTATTCTGAACAATCAA+TGG 0.420235 2.3:-75472838 None:intergenic
TCAACCACCTAGCGTAGAAC+TGG 0.422168 2.3:+75472251 MS.gene002078:CDS
TCCACAATGGGTGTTGTAGA+TGG 0.423191 2.3:-75472930 None:intergenic
ATGATAATTTCATACAACTT+TGG 0.432224 2.3:-75473035 None:intergenic
AATTATAGTAATGGCTCCAT+TGG 0.450678 2.3:-75472038 None:intergenic
TTGTATTCTGAACAATCAAT+GGG 0.457951 2.3:-75472837 None:intergenic
AGATCAAAGACATCATCTAC+TGG 0.478245 2.3:+75472783 MS.gene002078:CDS
CATGATGGACAAATCAAAGA+TGG 0.486498 2.3:+75473055 MS.gene002078:CDS
AATGTTACTTCCACGGAAGA+AGG 0.498412 2.3:+75472339 MS.gene002078:CDS
GCACGCGTGGCGGTTGTTGA+AGG 0.504466 2.3:+75472716 MS.gene002078:CDS
AGAAGTTTGTAAAAGTATCA+AGG 0.506530 2.3:+75473103 MS.gene002078:CDS
CTGCTAGGGAGTGGTGGTCG+TGG 0.507126 2.3:-75472114 None:intergenic
TTTGCATATAATTATAGTAA+TGG 0.507605 2.3:-75472047 None:intergenic
GTTGTATGAAATTATCATGA+TGG 0.509191 2.3:+75473040 MS.gene002078:CDS
TATTGAGAACTGTCACTGCT+AGG 0.514294 2.3:-75472129 None:intergenic
AATTATATGCAAACCCCAAT+CGG 0.514611 2.3:+75472057 MS.gene002078:CDS
TAAAATAGCTGAAGCAAGGT+TGG 0.515676 2.3:+75473001 MS.gene002078:CDS
GCTGTTACTAACAAGAAAAG+TGG 0.520506 2.3:+75472618 MS.gene002078:CDS
GTCTAGCATCGAAAATGTCT+CGG 0.531029 2.3:+75472956 MS.gene002078:CDS
ATGCTAGACAAATCCACAAT+GGG 0.540830 2.3:-75472942 None:intergenic
GCAGTCTGAGTCCGACATCA+TGG 0.543761 2.3:+75472641 MS.gene002078:CDS
CAATCACCGCCATTAACTGC+CGG 0.543770 2.3:+75472195 MS.gene002078:CDS
GGAGACTCATAGCGAGGGAG+TGG 0.545823 2.3:+75472526 MS.gene002078:CDS
GATTGAAACATACAAGGTCG+TGG 0.546490 2.3:-75472177 None:intergenic
TTGAGAACCATCACCGATTG+GGG 0.549171 2.3:-75472070 None:intergenic
AGTGCCAGTGTACTCGACTC+AGG 0.551047 2.3:+75472305 MS.gene002078:CDS
GGTGATTCCAGTTCTACGCT+AGG 0.553730 2.3:-75472258 None:intergenic
ATCTCAAACTGACCGTCCGA+TGG 0.554128 2.3:+75472866 MS.gene002078:CDS
ATTGAGAACTGTCACTGCTA+GGG 0.555051 2.3:-75472128 None:intergenic
TCTCAAACTGACCGTCCGAT+GGG 0.559121 2.3:+75472867 MS.gene002078:CDS
GAATCTGTAGTGGATTCAAT+TGG 0.562646 2.3:-75472279 None:intergenic
GAAGGATGAACCTAAATGGA+AGG 0.565794 2.3:+75472734 MS.gene002078:CDS
TCCATCTACAACACCCATTG+TGG 0.571693 2.3:+75472929 MS.gene002078:CDS
ATGCAAACCCCAATCGGTGA+TGG 0.572846 2.3:+75472063 MS.gene002078:CDS
CTGTTACTAACAAGAAAAGT+GGG 0.573605 2.3:+75472619 MS.gene002078:CDS
GTCAAATGGATCACAACCAA+TGG 0.577452 2.3:+75472022 None:intergenic
TCTAGAAAATGTTACTTCCA+CGG 0.579593 2.3:+75472332 MS.gene002078:CDS
CCGCCATTAACTGCCGGTGA+CGG 0.594377 2.3:+75472201 MS.gene002078:CDS
CTGTCACTGCTAGGGAGTGG+TGG 0.594858 2.3:-75472120 None:intergenic
ATAAATTGCTTATTCAAACA+TGG 0.603441 2.3:+75472412 MS.gene002078:CDS
ATTGAAACATACAAGGTCGT+GGG 0.606011 2.3:-75472176 None:intergenic
AGAACGCTCTCCTTCTTCCG+TGG 0.611495 2.3:-75472349 None:intergenic
CCAGTGTACTCGACTCAGGT+TGG 0.613284 2.3:+75472309 MS.gene002078:CDS
ATGTGCATCATCCATGATGT+CGG 0.617093 2.3:-75472652 None:intergenic
ATAATAAAATAGCTGAAGCA+AGG 0.619943 2.3:+75472997 MS.gene002078:CDS
AAGGATGAACCTAAATGGAA+GGG 0.623792 2.3:+75472735 MS.gene002078:CDS
GGCGGTGATTGAAACATACA+AGG 0.629344 2.3:-75472183 None:intergenic
GATTCCAGTTCTACGCTAGG+TGG 0.631252 2.3:-75472255 None:intergenic
GATCAAAGACATCATCTACT+GGG 0.635030 2.3:+75472784 MS.gene002078:CDS
GTTTCACAATGGAGCACGCG+TGG 0.636597 2.3:+75472703 MS.gene002078:CDS
ATTTCCAAAGATCCGATCGT+GGG 0.637771 2.3:+75472441 MS.gene002078:CDS
GATGGCTATGACAAATATCG+TGG 0.640937 2.3:+75472504 MS.gene002078:CDS
TCGTGGGAGACTCATAGCGA+GGG 0.641783 2.3:+75472521 MS.gene002078:CDS
CCAACCTGAGTCGAGTACAC+TGG 0.644022 2.3:-75472309 None:intergenic
CATTTCCAAAGATCCGATCG+TGG 0.644587 2.3:+75472440 MS.gene002078:CDS
CTCAAACTGACCGTCCGATG+GGG 0.645892 2.3:+75472868 MS.gene002078:CDS
GAACTGTCACTGCTAGGGAG+TGG 0.647133 2.3:-75472123 None:intergenic
ATCGTGGGAGACTCATAGCG+AGG 0.654193 2.3:+75472520 MS.gene002078:CDS
ATGGCTATGACAAATATCGT+GGG 0.656586 2.3:+75472505 MS.gene002078:CDS
GATGCTAGACAAATCCACAA+TGG 0.658808 2.3:-75472943 None:intergenic
ACGTAAAATACGTTTCACAA+TGG 0.660458 2.3:+75472692 MS.gene002078:CDS
TGGCACTTGAGAATCTGTAG+TGG 0.662634 2.3:-75472289 None:intergenic
GGTCCACACTCAAATCTCGA+TGG 0.664593 2.3:+75472547 MS.gene002078:CDS
TCACAATGGAGCACGCGTGG+CGG 0.673207 2.3:+75472706 MS.gene002078:CDS
CCGTCACCGGCAGTTAATGG+CGG 0.711408 2.3:-75472201 None:intergenic
ATGCCATCGAGATTTGAGTG+TGG 0.717662 2.3:-75472550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGCATATAATTATAGTAA+TGG - chr2.3:75472050-75472069 None:intergenic 15.0%
!! ATAAATTGCTTATTCAAACA+TGG + chr2.3:75472412-75472431 MS.gene002078:CDS 20.0%
!! ATGATAATTTCATACAACTT+TGG - chr2.3:75473038-75473057 None:intergenic 20.0%
! ATAATAAAATAGCTGAAGCA+AGG + chr2.3:75472997-75473016 MS.gene002078:CDS 25.0%
! GTTGTATGAAATTATCATGA+TGG + chr2.3:75473040-75473059 MS.gene002078:CDS 25.0%
! TTGTATTCTGAACAATCAAT+GGG - chr2.3:75472840-75472859 None:intergenic 25.0%
!!! AGAAGTTTGTAAAAGTATCA+AGG + chr2.3:75473103-75473122 MS.gene002078:CDS 25.0%
AATTATAGTAATGGCTCCAT+TGG - chr2.3:75472041-75472060 None:intergenic 30.0%
AATTATATGCAAACCCCAAT+CGG + chr2.3:75472057-75472076 MS.gene002078:CDS 30.0%
ACGTAAAATACGTTTCACAA+TGG + chr2.3:75472692-75472711 MS.gene002078:CDS 30.0%
CTAGGTGGTTGAAAAATAAA+AGG - chr2.3:75472243-75472262 None:intergenic 30.0%
CTGTTACTAACAAGAAAAGT+GGG + chr2.3:75472619-75472638 MS.gene002078:CDS 30.0%
GTTGTATTCTGAACAATCAA+TGG - chr2.3:75472841-75472860 None:intergenic 30.0%
TGTTGAATAGACATTGTCAT+TGG + chr2.3:75472574-75472593 MS.gene002078:CDS 30.0%
! TCTAGAAAATGTTACTTCCA+CGG + chr2.3:75472332-75472351 MS.gene002078:CDS 30.0%
!!! GTTTTGAGACATAAAAGGTT+GGG - chr2.3:75472157-75472176 None:intergenic 30.0%
!!! TTTTGAGACATAAAAGGTTG+GGG - chr2.3:75472156-75472175 None:intergenic 30.0%
AAGGATGAACCTAAATGGAA+GGG + chr2.3:75472735-75472754 MS.gene002078:CDS 35.0%
AGATCAAAGACATCATCTAC+TGG + chr2.3:75472783-75472802 MS.gene002078:CDS 35.0%
ATGCTAGACAAATCCACAAT+GGG - chr2.3:75472945-75472964 None:intergenic 35.0%
ATGGCTATGACAAATATCGT+GGG + chr2.3:75472505-75472524 MS.gene002078:CDS 35.0%
ATTGAAACATACAAGGTCGT+GGG - chr2.3:75472179-75472198 None:intergenic 35.0%
GATCAAAGACATCATCTACT+GGG + chr2.3:75472784-75472803 MS.gene002078:CDS 35.0%
GCTGTTACTAACAAGAAAAG+TGG + chr2.3:75472618-75472637 MS.gene002078:CDS 35.0%
GGTTGAAAAATAAAAGGTCG+TGG - chr2.3:75472237-75472256 None:intergenic 35.0%
TAAAATAGCTGAAGCAAGGT+TGG + chr2.3:75473001-75473020 MS.gene002078:CDS 35.0%
TGTTGAAGGATGAACCTAAA+TGG + chr2.3:75472730-75472749 MS.gene002078:CDS 35.0%
! ACCAAAAAGCAGATAGCTTT+TGG + chr2.3:75472469-75472488 MS.gene002078:CDS 35.0%
! CAAAAAGCAGATAGCTTTTG+GGG + chr2.3:75472471-75472490 MS.gene002078:CDS 35.0%
! CCAAAAAGCAGATAGCTTTT+GGG + chr2.3:75472470-75472489 MS.gene002078:CDS 35.0%
! GAACAATCAATGGGATTTTC+TGG - chr2.3:75472831-75472850 None:intergenic 35.0%
!! CATGATGGACAAATCAAAGA+TGG + chr2.3:75473055-75473074 MS.gene002078:CDS 35.0%
!! GAATCTGTAGTGGATTCAAT+TGG - chr2.3:75472282-75472301 None:intergenic 35.0%
!!! ACCTGAAACGTTGTTTTTTC+TGG - chr2.3:75472377-75472396 None:intergenic 35.0%
!!! AGACATTGTCATTGGTTTTG+CGG + chr2.3:75472582-75472601 MS.gene002078:CDS 35.0%
!!! GGTTTTGAGACATAAAAGGT+TGG - chr2.3:75472158-75472177 None:intergenic 35.0%
AAAAAGGAAGGGAAAGGGAA+AGG + chr2.3:75472902-75472921 MS.gene002078:CDS 40.0%
ATGTGCATCATCCATGATGT+CGG - chr2.3:75472655-75472674 None:intergenic 40.0%
ATTGAGAACTGTCACTGCTA+GGG - chr2.3:75472131-75472150 None:intergenic 40.0%
ATTGCTTCTCCCTTCCATTT+AGG - chr2.3:75472747-75472766 None:intergenic 40.0%
ATTTCCAAAGATCCGATCGT+GGG + chr2.3:75472441-75472460 MS.gene002078:CDS 40.0%
CAAAAAGCGGCAAAAAGGAA+GGG + chr2.3:75472891-75472910 MS.gene002078:CDS 40.0%
GAAGGATGAACCTAAATGGA+AGG + chr2.3:75472734-75472753 MS.gene002078:CDS 40.0%
GATGCTAGACAAATCCACAA+TGG - chr2.3:75472946-75472965 None:intergenic 40.0%
GATGGCTATGACAAATATCG+TGG + chr2.3:75472504-75472523 MS.gene002078:CDS 40.0%
GATTGAAACATACAAGGTCG+TGG - chr2.3:75472180-75472199 None:intergenic 40.0%
GCCAGAAAAAACAACGTTTC+AGG + chr2.3:75472373-75472392 MS.gene002078:CDS 40.0%
TATTGAGAACTGTCACTGCT+AGG - chr2.3:75472132-75472151 None:intergenic 40.0%
! AATGTTACTTCCACGGAAGA+AGG + chr2.3:75472339-75472358 MS.gene002078:CDS 40.0%
! GTCTAGCATCGAAAATGTCT+CGG + chr2.3:75472956-75472975 MS.gene002078:CDS 40.0%
! TTTGAGAACCATCACCGATT+GGG - chr2.3:75472074-75472093 None:intergenic 40.0%
!! CCCAAAAGCTATCTGCTTTT+TGG - chr2.3:75472473-75472492 None:intergenic 40.0%
!! TTTTGAGAACCATCACCGAT+TGG - chr2.3:75472075-75472094 None:intergenic 40.0%
!!! CGTGGGTTTTGAGACATAAA+AGG - chr2.3:75472162-75472181 None:intergenic 40.0%
!!! TAGCTTTTGGGGTAGAATCA+AGG + chr2.3:75472482-75472501 MS.gene002078:CDS 40.0%
!!! TTTTGGGGTAGAATCAAGGA+TGG + chr2.3:75472486-75472505 MS.gene002078:CDS 40.0%
ATGCCATCGAGATTTGAGTG+TGG - chr2.3:75472553-75472572 None:intergenic 45.0%
CATTTCCAAAGATCCGATCG+TGG + chr2.3:75472440-75472459 MS.gene002078:CDS 45.0%
GCAAAAAGCGGCAAAAAGGA+AGG + chr2.3:75472890-75472909 MS.gene002078:CDS 45.0%
GGCGGTGATTGAAACATACA+AGG - chr2.3:75472186-75472205 None:intergenic 45.0%
TCCATCTACAACACCCATTG+TGG + chr2.3:75472929-75472948 MS.gene002078:CDS 45.0%
TGGCACTTGAGAATCTGTAG+TGG - chr2.3:75472292-75472311 None:intergenic 45.0%
! TCCACAATGGGTGTTGTAGA+TGG - chr2.3:75472933-75472952 None:intergenic 45.0%
! TTGAGAACCATCACCGATTG+GGG - chr2.3:75472073-75472092 None:intergenic 45.0%
! TTTTGGTCAACTCCCACGAT+CGG - chr2.3:75472456-75472475 None:intergenic 45.0%
!! TGGATTTTGAGAACCGTCAC+CGG - chr2.3:75472217-75472236 None:intergenic 45.0%
AACTCCCACGATCGGATCTT+TGG - chr2.3:75472448-75472467 None:intergenic 50.0%
AGCGGCAAAAAGGAAGGGAA+AGG + chr2.3:75472896-75472915 MS.gene002078:CDS 50.0%
ATCTCAAACTGACCGTCCGA+TGG + chr2.3:75472866-75472885 MS.gene002078:CDS 50.0%
ATGCAAACCCCAATCGGTGA+TGG + chr2.3:75472063-75472082 MS.gene002078:CDS 50.0%
CAATCACCGCCATTAACTGC+CGG + chr2.3:75472195-75472214 MS.gene002078:CDS 50.0%
GATTCCAGTTCTACGCTAGG+TGG - chr2.3:75472258-75472277 None:intergenic 50.0%
GCGGCAAAAAGGAAGGGAAA+GGG + chr2.3:75472897-75472916 MS.gene002078:CDS 50.0%
GGTCCACACTCAAATCTCGA+TGG + chr2.3:75472547-75472566 MS.gene002078:CDS 50.0%
GGTGATTCCAGTTCTACGCT+AGG - chr2.3:75472261-75472280 None:intergenic 50.0%
TCAACCACCTAGCGTAGAAC+TGG + chr2.3:75472251-75472270 MS.gene002078:CDS 50.0%
TCTCAAACTGACCGTCCGAT+GGG + chr2.3:75472867-75472886 MS.gene002078:CDS 50.0%
TGGGGCAAAAAGCGGCAAAA+AGG + chr2.3:75472886-75472905 MS.gene002078:CDS 50.0%
!!! TTTGCCGCTTTTTGCCCCAT+CGG - chr2.3:75472885-75472904 None:intergenic 50.0%
AGAACGCTCTCCTTCTTCCG+TGG - chr2.3:75472352-75472371 None:intergenic 55.0%
AGTGCCAGTGTACTCGACTC+AGG + chr2.3:75472305-75472324 MS.gene002078:CDS 55.0%
ATCGTGGGAGACTCATAGCG+AGG + chr2.3:75472520-75472539 MS.gene002078:CDS 55.0%
CCAACCTGAGTCGAGTACAC+TGG - chr2.3:75472312-75472331 None:intergenic 55.0%
CCAGTGTACTCGACTCAGGT+TGG + chr2.3:75472309-75472328 MS.gene002078:CDS 55.0%
CTCAAACTGACCGTCCGATG+GGG + chr2.3:75472868-75472887 MS.gene002078:CDS 55.0%
GAACCGTCACCGGCAGTTAA+TGG - chr2.3:75472207-75472226 None:intergenic 55.0%
GAACTGTCACTGCTAGGGAG+TGG - chr2.3:75472126-75472145 None:intergenic 55.0%
GCAGTCTGAGTCCGACATCA+TGG + chr2.3:75472641-75472660 MS.gene002078:CDS 55.0%
GTTTCACAATGGAGCACGCG+TGG + chr2.3:75472703-75472722 MS.gene002078:CDS 55.0%
TCGTGGGAGACTCATAGCGA+GGG + chr2.3:75472521-75472540 MS.gene002078:CDS 55.0%
CCGCCATTAACTGCCGGTGA+CGG + chr2.3:75472201-75472220 MS.gene002078:CDS 60.0%
CCGTCACCGGCAGTTAATGG+CGG - chr2.3:75472204-75472223 None:intergenic 60.0%
CCGTCCGATGGGGCAAAAAG+CGG + chr2.3:75472878-75472897 MS.gene002078:CDS 60.0%
CTGTCACTGCTAGGGAGTGG+TGG - chr2.3:75472123-75472142 None:intergenic 60.0%
GGAGACTCATAGCGAGGGAG+TGG + chr2.3:75472526-75472545 MS.gene002078:CDS 60.0%
TCACAATGGAGCACGCGTGG+CGG + chr2.3:75472706-75472725 MS.gene002078:CDS 60.0%
!!! CCGCTTTTTGCCCCATCGGA+CGG - chr2.3:75472881-75472900 None:intergenic 60.0%
CTGCTAGGGAGTGGTGGTCG+TGG - chr2.3:75472117-75472136 None:intergenic 65.0%
GCACGCGTGGCGGTTGTTGA+AGG + chr2.3:75472716-75472735 MS.gene002078:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 75472027 75473148 75472027 ID=MS.gene002078
chr2.3 mRNA 75472027 75473148 75472027 ID=MS.gene002078.t1;Parent=MS.gene002078
chr2.3 exon 75472027 75473148 75472027 ID=MS.gene002078.t1.exon1;Parent=MS.gene002078.t1
chr2.3 CDS 75472027 75473148 75472027 ID=cds.MS.gene002078.t1;Parent=MS.gene002078.t1
Gene Sequence

>MS.gene002078

ATGGATCACAACCAATGGAGCCATTACTATAATTATATGCAAACCCCAATCGGTGATGGTTCTCAAAATTTTCAATCTTTTACGTATCCACGACCACCACTCCCTAGCAGTGACAGTTCTCAATATCCCCAACCTTTTATGTCTCAAAACCCACGACCTTGTATGTTTCAATCACCGCCATTAACTGCCGGTGACGGTTCTCAAAATCCACGACCTTTTATTTTTCAACCACCTAGCGTAGAACTGGAATCACCAATTGAATCCACTACAGATTCTCAAGTGCCAGTGTACTCGACTCAGGTTGGTCTAGAAAATGTTACTTCCACGGAAGAAGGAGAGCGTTCTAGCCAGAAAAAACAACGTTTCAGGTTCTCAGATGAAGAAGATAAATTGCTTATTCAAACATGGCTCAACATTTCCAAAGATCCGATCGTGGGAGTTGACCAAAAAGCAGATAGCTTTTGGGGTAGAATCAAGGATGGCTATGACAAATATCGTGGGAGACTCATAGCGAGGGAGTGGTCCACACTCAAATCTCGATGGCATTTGTTGAATAGACATTGTCATTGGTTTTGCGGCTCTTACAAACTAGCTGTTACTAACAAGAAAAGTGGGCAGTCTGAGTCCGACATCATGGATGATGCACATATGCTTTTTGTACAAGTACGTAAAATACGTTTCACAATGGAGCACGCGTGGCGGTTGTTGAAGGATGAACCTAAATGGAAGGGAGAAGCAATGAACAACTCTTCAAAGAGATCAAAGACATCATCTACTGGGACATACTCATCTACATCTAATCCAGAAAATCCCATTGATTGTTCAGAATACAACAATGCATCTCAAACTGACCGTCCGATGGGGCAAAAAGCGGCAAAAAGGAAGGGAAAGGGAAAGGCATCTCCATCTACAACACCCATTGTGGATTTGTCTAGCATCGAAAATGTCTCGGAAAAGAAACTAGATGTGTATAATAAAATAGCTGAAGCAAGGTTGGCAGAGAGCATACCAAAGTTGTATGAAATTATCATGATGGACAAATCAAAGATGGATGATGAGCAACGTCATGAGCATGAAGAAGTTTGTAAAAGTATCAAGGAGAAGTATTTCAAGAGAAGTTAG
Protein sequence

>MS.gene002078.t1

MDHNQWSHYYNYMQTPIGDGSQNFQSFTYPRPPLPSSDSSQYPQPFMSQNPRPCMFQSPPLTAGDGSQNPRPFIFQPPSVELESPIESTTDSQVPVYSTQVGLENVTSTEEGERSSQKKQRFRFSDEEDKLLIQTWLNISKDPIVGVDQKADSFWGRIKDGYDKYRGRLIAREWSTLKSRWHLLNRHCHWFCGSYKLAVTNKKSGQSESDIMDDAHMLFVQVRKIRFTMEHAWRLLKDEPKWKGEAMNNSSKRSKTSSTGTYSSTSNPENPIDCSEYNNASQTDRPMGQKAAKRKGKGKASPSTTPIVDLSSIENVSEKKLDVYNKIAEARLAESIPKLYEIIMMDKSKMDDEQRHEHEEVCKSIKEKYFKRS