Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002379.t1 | XP_003593454.1 | 97.2 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 6.60E-175 | 623.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002379.t1 | Q53FA7 | 41.3 | 329 | 186 | 5 | 1 | 323 | 1 | 328 | 3.4e-63 | 243.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002379.t1 | G7ILE5 | 97.2 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 4.8e-175 | 623.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene002379 | MS.gene013451 | PPI |
MS.gene002379 | MS.gene049424 | PPI |
MS.gene002379 | MS.gene06555 | PPI |
MS.gene002379 | MS.gene06797 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002379.t1 | MTR_4g050760 | 97.222 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 0.0 | 642 |
MS.gene002379.t1 | MTR_2g012380 | 97.222 | 324 | 9 | 0 | 1 | 324 | 1 | 324 | 0.0 | 642 |
MS.gene002379.t1 | MTR_2g012420 | 93.210 | 324 | 22 | 0 | 1 | 324 | 1 | 324 | 0.0 | 610 |
MS.gene002379.t1 | MTR_2g012380 | 96.538 | 260 | 9 | 0 | 1 | 260 | 1 | 260 | 0.0 | 513 |
MS.gene002379.t1 | MTR_2g012420 | 95.902 | 244 | 10 | 0 | 81 | 324 | 10 | 253 | 8.41e-171 | 474 |
MS.gene002379.t1 | MTR_4g050710 | 95.902 | 244 | 10 | 0 | 81 | 324 | 4 | 247 | 9.39e-171 | 474 |
MS.gene002379.t1 | MTR_2g012420 | 97.396 | 192 | 5 | 0 | 133 | 324 | 1 | 192 | 1.35e-134 | 380 |
MS.gene002379.t1 | MTR_4g029500 | 32.515 | 326 | 214 | 4 | 1 | 324 | 52 | 373 | 2.34e-41 | 148 |
MS.gene002379.t1 | MTR_2g012390 | 88.889 | 63 | 7 | 0 | 82 | 144 | 5 | 67 | 2.80e-31 | 113 |
MS.gene002379.t1 | MTR_8g064610 | 30.178 | 338 | 188 | 13 | 1 | 323 | 76 | 380 | 1.04e-26 | 108 |
MS.gene002379.t1 | MTR_3g093620 | 30.744 | 309 | 206 | 3 | 19 | 324 | 33 | 336 | 1.16e-26 | 108 |
MS.gene002379.t1 | MTR_4g086400 | 31.674 | 221 | 139 | 6 | 26 | 239 | 175 | 390 | 1.00e-22 | 98.6 |
MS.gene002379.t1 | MTR_4g086400 | 31.674 | 221 | 139 | 6 | 26 | 239 | 315 | 530 | 1.32e-22 | 99.0 |
MS.gene002379.t1 | MTR_4g032995 | 27.928 | 333 | 200 | 12 | 10 | 323 | 16 | 327 | 4.53e-22 | 95.1 |
MS.gene002379.t1 | MTR_4g086410 | 27.726 | 321 | 198 | 10 | 26 | 325 | 315 | 622 | 1.12e-21 | 95.9 |
MS.gene002379.t1 | MTR_4g036310 | 28.923 | 325 | 207 | 10 | 10 | 323 | 16 | 327 | 4.32e-21 | 92.4 |
MS.gene002379.t1 | MTR_4g033205 | 27.628 | 333 | 201 | 12 | 10 | 323 | 16 | 327 | 8.15e-21 | 91.7 |
MS.gene002379.t1 | MTR_7g055743 | 25.857 | 321 | 214 | 9 | 14 | 323 | 60 | 367 | 1.25e-18 | 85.9 |
MS.gene002379.t1 | MTR_6g012170 | 28.788 | 330 | 179 | 12 | 13 | 323 | 24 | 316 | 1.97e-18 | 84.7 |
MS.gene002379.t1 | MTR_2g078520 | 26.377 | 345 | 218 | 9 | 2 | 323 | 27 | 358 | 4.29e-18 | 84.3 |
MS.gene002379.t1 | MTR_8g035880 | 32.727 | 220 | 127 | 6 | 10 | 217 | 13 | 223 | 1.26e-17 | 82.8 |
MS.gene002379.t1 | MTR_8g035630 | 32.727 | 220 | 127 | 6 | 10 | 217 | 13 | 223 | 1.73e-17 | 82.4 |
MS.gene002379.t1 | MTR_7g034395 | 28.882 | 322 | 168 | 12 | 23 | 323 | 32 | 313 | 1.04e-16 | 79.7 |
MS.gene002379.t1 | MTR_4g036260 | 25.614 | 285 | 186 | 9 | 50 | 323 | 37 | 306 | 4.17e-14 | 72.0 |
MS.gene002379.t1 | MTR_6g012160 | 30.579 | 242 | 137 | 9 | 13 | 237 | 24 | 251 | 2.95e-13 | 69.7 |
MS.gene002379.t1 | MTR_8g095220 | 24.926 | 337 | 189 | 11 | 1 | 278 | 54 | 385 | 7.11e-12 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002379.t1 | AT4G21580 | 73.994 | 323 | 84 | 0 | 1 | 323 | 1 | 323 | 1.46e-175 | 489 |
MS.gene002379.t1 | AT4G21580 | 72.446 | 323 | 83 | 1 | 1 | 323 | 1 | 317 | 3.07e-169 | 473 |
MS.gene002379.t1 | AT4G21580 | 72.414 | 290 | 80 | 0 | 34 | 323 | 1 | 290 | 1.64e-153 | 432 |
MS.gene002379.t1 | AT5G61510 | 31.193 | 327 | 217 | 4 | 1 | 324 | 84 | 405 | 1.43e-38 | 141 |
MS.gene002379.t1 | AT5G61510 | 30.892 | 314 | 209 | 4 | 14 | 324 | 40 | 348 | 3.13e-35 | 131 |
MS.gene002379.t1 | AT1G23740 | 30.473 | 338 | 187 | 12 | 1 | 323 | 78 | 382 | 1.72e-27 | 111 |
MS.gene002379.t1 | AT3G56460 | 27.545 | 334 | 217 | 7 | 7 | 325 | 15 | 338 | 1.09e-24 | 102 |
MS.gene002379.t1 | AT1G49670 | 31.336 | 217 | 137 | 6 | 28 | 239 | 317 | 526 | 1.79e-21 | 95.5 |
MS.gene002379.t1 | AT4G13010 | 28.528 | 326 | 207 | 9 | 10 | 323 | 16 | 327 | 1.12e-20 | 91.3 |
MS.gene002379.t1 | AT1G49670 | 29.114 | 237 | 139 | 6 | 28 | 239 | 317 | 549 | 1.15e-19 | 90.1 |
MS.gene002379.t1 | AT3G15090 | 27.794 | 349 | 208 | 13 | 2 | 323 | 33 | 364 | 3.21e-19 | 87.8 |
MS.gene002379.t1 | AT5G63620 | 25.369 | 339 | 185 | 12 | 1 | 278 | 56 | 387 | 8.00e-14 | 72.4 |
MS.gene002379.t1 | AT5G63620 | 25.074 | 339 | 186 | 12 | 1 | 278 | 56 | 387 | 1.46e-13 | 71.2 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAGATCTACGTGCTTTATT+TGG | 0.236190 | 2.4:+71832595 | MS.gene002379:CDS |
ATGAGTACTTCATTGTCTTT+AGG | 0.244727 | 2.4:-71830925 | None:intergenic |
ACCTTTCCTTCTGCAATTGC+AGG | 0.276088 | 2.4:-71839561 | None:intergenic |
AATCATACAACTTACCAATA+AGG | 0.288330 | 2.4:-71831807 | None:intergenic |
TATGACAAGCCGGCTATCTA+AGG | 0.293441 | 2.4:+71831778 | MS.gene002379:CDS |
GAACGGTATCGGCACTGTTA+AGG | 0.335381 | 2.4:-71830966 | None:intergenic |
TTCATCAATTCTCAGGTTCA+TGG | 0.344560 | 2.4:+71832000 | MS.gene002379:intron |
TGATGTTATTCTTGATTGTA+TGG | 0.350274 | 2.4:+71832483 | MS.gene002379:CDS |
TCTTGAAGTTGTAGAACTTC+AGG | 0.359966 | 2.4:-71830886 | None:intergenic |
AACGGTATCGGCACTGTTAA+GGG | 0.374677 | 2.4:-71830965 | None:intergenic |
TATCCAGGTCTTGAATGTTC+TGG | 0.375437 | 2.4:+71831030 | MS.gene002379:CDS |
TGCGGAGGCTCACCGGCTTA+TGG | 0.376154 | 2.4:+71839623 | MS.gene002379:CDS |
ATCAAGATTTCTTTGATAGT+AGG | 0.380590 | 2.4:-71832512 | None:intergenic |
AACGTTTCCAACTGGAAAAT+CGG | 0.390954 | 2.4:+71831075 | MS.gene002379:CDS |
TCCTGAGGGACAAGTTCTTC+CGG | 0.391442 | 2.4:+71831682 | MS.gene002379:CDS |
ACTTCATTGTCTTTAGGTTG+AGG | 0.404599 | 2.4:-71830919 | None:intergenic |
AGAGAAATCCCGGGTGGAAC+CGG | 0.415538 | 2.4:-71831701 | None:intergenic |
CAGGTATGTGCTCTTCTAGC+TGG | 0.420815 | 2.4:+71831632 | MS.gene002379:intron |
TTGGTATAAACGTTTCCAAC+TGG | 0.432549 | 2.4:+71831067 | MS.gene002379:CDS |
CTTCATTGTCTTTAGGTTGA+GGG | 0.442897 | 2.4:-71830918 | None:intergenic |
CTGAAGTAGAGAAGAATGTT+TGG | 0.443029 | 2.4:+71839538 | MS.gene002379:CDS |
GCCTTTCCTTTGAACGGTAT+CGG | 0.446179 | 2.4:-71830977 | None:intergenic |
GGGCTTGCACCTTGAGGGAT+AGG | 0.452215 | 2.4:-71831006 | None:intergenic |
ATGGAAAGCAGTCAGCATAT+TGG | 0.471076 | 2.4:+71839642 | MS.gene002379:CDS |
TTACAAAACAGAGGACTTTG+TGG | 0.473910 | 2.4:+71832287 | MS.gene002379:CDS |
AGAACATTCAAGACCTGGAT+AGG | 0.477853 | 2.4:-71831028 | None:intergenic |
TGCATCCTTCAGAGAAATCC+CGG | 0.479401 | 2.4:-71831711 | None:intergenic |
CTGAAGCTGCGGAGGCTCAC+CGG | 0.480756 | 2.4:+71839616 | MS.gene002379:CDS |
CAACTGGAAAATCGGTGATC+AGG | 0.480863 | 2.4:+71831083 | MS.gene002379:CDS |
CAAGTTCTTCCGGTTCCACC+CGG | 0.482083 | 2.4:+71831692 | MS.gene002379:CDS |
GCAAGGGTAAAGGAAGAAAC+TGG | 0.482737 | 2.4:+71832309 | MS.gene002379:CDS |
GGACTTTGTGGCAAGGGTAA+AGG | 0.486871 | 2.4:+71832299 | MS.gene002379:CDS |
GATAGGGGCTTGCACCTTGA+GGG | 0.487874 | 2.4:-71831011 | None:intergenic |
TCAAGAGTATTTGTTACTGC+AGG | 0.488629 | 2.4:+71832075 | MS.gene002379:CDS |
CCCTCTTTCTGAAGCTGCGG+AGG | 0.494418 | 2.4:+71839608 | MS.gene002379:CDS |
CATGGAGGTTCAAGTGGAAT+CGG | 0.496039 | 2.4:+71832018 | MS.gene002379:CDS |
ATCGGCACTGTTAAGGGCAG+TGG | 0.498747 | 2.4:-71830959 | None:intergenic |
GTAAAAGCCTTTCCTTTGAA+CGG | 0.516093 | 2.4:-71830983 | None:intergenic |
TCCACCCGGGATTTCTCTGA+AGG | 0.519437 | 2.4:+71831706 | MS.gene002379:CDS |
GCCTGCAATTGCAGAAGGAA+AGG | 0.519570 | 2.4:+71839560 | MS.gene002379:CDS |
GAACATTCAAGACCTGGATA+GGG | 0.521615 | 2.4:-71831027 | None:intergenic |
GGGAATGATTTGTAAACCAC+AGG | 0.522474 | 2.4:-71839588 | None:intergenic |
ATGACAAGCCGGCTATCTAA+GGG | 0.522904 | 2.4:+71831779 | MS.gene002379:CDS |
CACTGTTAAGGGCAGTGGCA+TGG | 0.523420 | 2.4:-71830954 | None:intergenic |
GGCAAGCGTCTCACTGTACA+AGG | 0.526294 | 2.4:+71832616 | MS.gene002379:CDS |
CAAGGTGCAAGCCCCTATCC+AGG | 0.528336 | 2.4:+71831015 | MS.gene002379:CDS |
TGAAGTTCTACAACTTCAAG+AGG | 0.532066 | 2.4:+71830888 | MS.gene002379:CDS |
GATGTTATTCTTGATTGTAT+GGG | 0.533185 | 2.4:+71832484 | MS.gene002379:CDS |
GCCTCCGCAGCTTCAGAAAG+AGG | 0.533973 | 2.4:-71839609 | None:intergenic |
CAGGTTCATGGAGGTTCAAG+TGG | 0.534759 | 2.4:+71832012 | MS.gene002379:intron |
ACCGGAAGAACTTGTCCCTC+AGG | 0.537543 | 2.4:-71831683 | None:intergenic |
GGCTTGCACCTTGAGGGATA+GGG | 0.540973 | 2.4:-71831005 | None:intergenic |
GGATAGGGGCTTGCACCTTG+AGG | 0.546687 | 2.4:-71831012 | None:intergenic |
TCTGGAACTATTGAATCCGT+TGG | 0.554523 | 2.4:+71831048 | MS.gene002379:CDS |
GCTGACTGCTTTCCATAAGC+CGG | 0.555663 | 2.4:-71839635 | None:intergenic |
TGTGCTCTTCTAGCTGGAGG+TGG | 0.560275 | 2.4:+71831638 | MS.gene002379:CDS |
AAGGAAGAAACTGGCGGACA+AGG | 0.566694 | 2.4:+71832318 | MS.gene002379:CDS |
GTTTGGCCTGCAATTGCAGA+AGG | 0.566773 | 2.4:+71839555 | MS.gene002379:CDS |
GCCGATACCGTTCAAAGGAA+AGG | 0.568367 | 2.4:+71830976 | MS.gene002379:CDS |
AACAGAGGACTTTGTGGCAA+GGG | 0.571801 | 2.4:+71832293 | MS.gene002379:CDS |
TGGAAAGATATTGCTTGTTG+TGG | 0.579900 | 2.4:+71839662 | MS.gene002379:CDS |
GTTGGAAACGTTTATACCAA+CGG | 0.581226 | 2.4:-71831064 | None:intergenic |
CCTCCGCAGCTTCAGAAAGA+GGG | 0.582608 | 2.4:-71839608 | None:intergenic |
GTATGTGCTCTTCTAGCTGG+AGG | 0.586099 | 2.4:+71831635 | MS.gene002379:CDS |
TGTAGAACTTCAGGTCCACC+TGG | 0.592318 | 2.4:-71830877 | None:intergenic |
ATTCCCTCTTTCTGAAGCTG+CGG | 0.593597 | 2.4:+71839605 | MS.gene002379:CDS |
AACATTCAAGACCTGGATAG+GGG | 0.603099 | 2.4:-71831026 | None:intergenic |
AAGAGTATTGGAGCTGATGT+TGG | 0.603468 | 2.4:+71832258 | MS.gene002379:CDS |
TAACAAATACTCTTGATCCT+CGG | 0.609699 | 2.4:-71832068 | None:intergenic |
GTTCCAGAACATTCAAGACC+TGG | 0.611446 | 2.4:-71831033 | None:intergenic |
AGAAGGAAAGGTTAAGCCTG+TGG | 0.612996 | 2.4:+71839572 | MS.gene002379:CDS |
ACAGTGCCGATACCGTTCAA+AGG | 0.616788 | 2.4:+71830971 | MS.gene002379:CDS |
AAGTTCTTCCGGTTCCACCC+GGG | 0.628530 | 2.4:+71831693 | MS.gene002379:CDS |
TTTATTATCGGCTTTCAAGG+GGG | 0.643203 | 2.4:+71832559 | MS.gene002379:CDS |
GACAAGCCGGCTATCTAAGG+GGG | 0.645311 | 2.4:+71831781 | MS.gene002379:CDS |
GCATCCTTCAGAGAAATCCC+GGG | 0.646597 | 2.4:-71831710 | None:intergenic |
ATCAATTCTCAGGTTCATGG+AGG | 0.649634 | 2.4:+71832003 | MS.gene002379:intron |
AAACAGAGGACTTTGTGGCA+AGG | 0.650379 | 2.4:+71832292 | MS.gene002379:CDS |
GCAGTTGTAATTACAACACC+AGG | 0.653000 | 2.4:+71830859 | MS.gene002379:CDS |
TGACAAGCCGGCTATCTAAG+GGG | 0.683970 | 2.4:+71831780 | MS.gene002379:CDS |
TCCTTCAGAGAAATCCCGGG+TGG | 0.700414 | 2.4:-71831707 | None:intergenic |
CTGAGGTTGCATGTACTGTG+TGG | 0.713501 | 2.4:+71831744 | MS.gene002379:CDS |
TGGTATCAATTACAAAACAG+AGG | 0.714141 | 2.4:+71832278 | MS.gene002379:CDS |
ATTCAGATAGCTAAGTACCG+AGG | 0.723680 | 2.4:+71832051 | MS.gene002379:CDS |
GTTGTAATTACAACACCAGG+TGG | 0.740223 | 2.4:+71830862 | MS.gene002379:CDS |
AGGGTAAAGGAAGAAACTGG+CGG | 0.742355 | 2.4:+71832312 | MS.gene002379:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 71830853 | 71839689 | 71830853 | ID=MS.gene002379 |
chr2.4 | mRNA | 71830853 | 71839689 | 71830853 | ID=MS.gene002379.t1;Parent=MS.gene002379 |
chr2.4 | exon | 71830853 | 71831104 | 71830853 | ID=MS.gene002379.t1.exon1;Parent=MS.gene002379.t1 |
chr2.4 | CDS | 71830853 | 71831104 | 71830853 | ID=cds.MS.gene002379.t1;Parent=MS.gene002379.t1 |
chr2.4 | exon | 71831635 | 71831814 | 71831635 | ID=MS.gene002379.t1.exon2;Parent=MS.gene002379.t1 |
chr2.4 | CDS | 71831635 | 71831814 | 71831635 | ID=cds.MS.gene002379.t1;Parent=MS.gene002379.t1 |
chr2.4 | exon | 71832015 | 71832096 | 71832015 | ID=MS.gene002379.t1.exon3;Parent=MS.gene002379.t1 |
chr2.4 | CDS | 71832015 | 71832096 | 71832015 | ID=cds.MS.gene002379.t1;Parent=MS.gene002379.t1 |
chr2.4 | exon | 71832232 | 71832339 | 71832232 | ID=MS.gene002379.t1.exon4;Parent=MS.gene002379.t1 |
chr2.4 | CDS | 71832232 | 71832339 | 71832232 | ID=cds.MS.gene002379.t1;Parent=MS.gene002379.t1 |
chr2.4 | exon | 71832479 | 71832637 | 71832479 | ID=MS.gene002379.t1.exon5;Parent=MS.gene002379.t1 |
chr2.4 | CDS | 71832479 | 71832637 | 71832479 | ID=cds.MS.gene002379.t1;Parent=MS.gene002379.t1 |
chr2.4 | exon | 71839490 | 71839689 | 71839490 | ID=MS.gene002379.t1.exon6;Parent=MS.gene002379.t1 |
chr2.4 | CDS | 71839490 | 71839689 | 71839490 | ID=cds.MS.gene002379.t1;Parent=MS.gene002379.t1 |
Gene Sequence |
Protein sequence |