AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002988

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002988.t1 MTR_2g023880 99.519 208 1 0 1 208 15 222 9.25e-150 415
MS.gene002988.t1 MTR_4g049540 61.836 207 78 1 1 207 15 220 2.36e-91 267
MS.gene002988.t1 MTR_2g088060 51.691 207 99 1 1 207 15 220 1.03e-63 197
MS.gene002988.t1 MTR_7g056133 43.915 189 98 2 10 191 25 212 4.26e-44 147
MS.gene002988.t1 MTR_5g093360 53.571 84 38 1 2 85 16 98 1.21e-26 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002988.t1 AT5G42570 64.103 195 69 1 1 195 15 208 5.30e-89 261
MS.gene002988.t1 AT1G11905 60.714 196 76 1 1 196 15 209 5.61e-81 241
MS.gene002988.t1 AT1G11905 56.633 196 83 2 1 196 15 208 2.96e-69 211
MS.gene002988.t1 AT5G48660 41.624 197 106 3 4 192 18 213 4.35e-39 134
MS.gene002988.t1 AT3G07190 40.609 197 108 3 4 192 18 213 7.28e-37 128
MS.gene002988.t1 AT3G20450 50.420 119 58 1 1 118 19 137 8.88e-33 115
MS.gene002988.t1 AT5G48660 37.226 137 79 1 63 192 1 137 1.92e-19 81.3

Find 48 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2.2:+62037052 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2.2:-62039429 MS.gene002988:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2.2:+62037108 None:intergenic
ATTGAGGAAGCTTGTAATAA+TGG 0.322813 2.2:-62039591 MS.gene002988:CDS
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2.2:+62037411 None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2.2:-62037314 MS.gene002988:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2.2:-62039585 MS.gene002988:CDS
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2.2:+62037360 None:intergenic
TTATTACAAGCTTCCTCAAT+GGG 0.391866 2.2:+62039594 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2.2:-62037181 MS.gene002988:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2.2:-62039438 MS.gene002988:CDS
ACAGACTGCATCATTACATA+AGG 0.453424 2.2:-62037388 MS.gene002988:CDS
ACATAAGGGAACTCCGGATT+CGG 0.458900 2.2:-62037373 MS.gene002988:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2.2:-62039552 MS.gene002988:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2.2:+62037093 None:intergenic
ATTATTACAAGCTTCCTCAA+TGG 0.471169 2.2:+62039593 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2.2:-62037246 MS.gene002988:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2.2:+62037099 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2.2:-62039536 MS.gene002988:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2.2:-62037288 MS.gene002988:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2.2:-62039563 MS.gene002988:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2.2:-62037216 MS.gene002988:CDS
CAACAACGTGGGATCGAAGA+TGG 0.533524 2.2:-62039464 MS.gene002988:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2.2:-62037135 MS.gene002988:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2.2:-62039580 MS.gene002988:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.547266 2.2:-62039398 MS.gene002988:intron
TCTTCTTGAAGCTACACTCA+TGG 0.548048 2.2:-62039399 MS.gene002988:CDS
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2.2:-62037336 MS.gene002988:CDS
CAGACTGCATCATTACATAA+GGG 0.555282 2.2:-62037387 MS.gene002988:CDS
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2.2:+62037102 None:intergenic
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2.2:-62037167 MS.gene002988:CDS
ATCATTACATAAGGGAACTC+CGG 0.575747 2.2:-62037379 MS.gene002988:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2.2:+62039428 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2.2:-62037166 MS.gene002988:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2.2:-62037212 MS.gene002988:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2.2:-62037360 MS.gene002988:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2.2:-62039569 MS.gene002988:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2.2:+62037178 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2.2:+62039424 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2.2:+62039523 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2.2:-62037334 MS.gene002988:CDS
TGTTATTCAAGACCCCATTG+AGG 0.652558 2.2:-62039607 MS.gene002988:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2.2:-62039475 MS.gene002988:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2.2:-62037335 MS.gene002988:CDS
TATTACAAGCTTCCTCAATG+GGG 0.687342 2.2:+62039595 None:intergenic
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2.2:-62037337 MS.gene002988:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2.2:-62037333 MS.gene002988:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2.2:-62039476 MS.gene002988:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG + chr2.2:62038228-62038247 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG + chr2.2:62038229-62038248 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG + chr2.2:62039187-62039206 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG - chr2.2:62038309-62038328 MS.gene002988:intron 15.0%
!!! ATTTTTCTTTTTCTTTTTCA+TGG - chr2.2:62037308-62037327 MS.gene002988:CDS 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG - chr2.2:62037394-62037413 MS.gene002988:CDS 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG - chr2.2:62038177-62038196 MS.gene002988:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG - chr2.2:62037493-62037512 MS.gene002988:intron 15.0%
!!! TTTTTCTTTTTCTTTTTCAT+GGG - chr2.2:62037309-62037328 MS.gene002988:CDS 15.0%
!! AATCATAAGATATATGCATA+TGG + chr2.2:62038547-62038566 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG - chr2.2:62038881-62038900 MS.gene002988:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG + chr2.2:62038775-62038794 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG - chr2.2:62037400-62037419 MS.gene002988:CDS 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG - chr2.2:62038284-62038303 MS.gene002988:intron 20.0%
!!! ATTTTGCTTATAATTAAGAC+TGG - chr2.2:62037537-62037556 MS.gene002988:intron 20.0%
!!! CTATATGATTTGCAATTTTT+AGG - chr2.2:62038936-62038955 MS.gene002988:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG + chr2.2:62038157-62038176 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG - chr2.2:62039073-62039092 MS.gene002988:intron 20.0%
! AAGTTTAACAACATACTAGA+TGG + chr2.2:62038985-62039004 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG + chr2.2:62037810-62037829 None:intergenic 25.0%
! AGATTGACTACATTAATGAA+AGG + chr2.2:62037816-62037835 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG + chr2.2:62037809-62037828 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG - chr2.2:62039199-62039218 MS.gene002988:intron 25.0%
! TTCAGATGAAACTAAAACAA+TGG - chr2.2:62039390-62039409 MS.gene002988:intron 25.0%
! TTTGGAAATATGTTGAACTT+AGG + chr2.2:62039032-62039051 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG + chr2.2:62038493-62038512 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG - chr2.2:62037369-62037388 MS.gene002988:CDS 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG + chr2.2:62039050-62039069 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG - chr2.2:62038255-62038274 MS.gene002988:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG - chr2.2:62039341-62039360 MS.gene002988:intron 30.0%
AAGTTGAAAAATGTGAGCTT+TGG - chr2.2:62038835-62038854 MS.gene002988:intron 30.0%
ACAATGATTCAGCATTCATA+AGG - chr2.2:62038504-62038523 MS.gene002988:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG - chr2.2:62039462-62039481 MS.gene002988:CDS 30.0%
AGATCTTCTCAATTTCCAAA+AGG + chr2.2:62037742-62037761 None:intergenic 30.0%
ATTATTACAAGCTTCCTCAA+TGG + chr2.2:62037088-62037107 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG - chr2.2:62039238-62039257 MS.gene002988:intron 30.0%
ATTGAGGAAGCTTGTAATAA+TGG - chr2.2:62037087-62037106 MS.gene002988:CDS 30.0%
CAGTATTGTTTATGTTGGAT+TGG + chr2.2:62039142-62039161 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG + chr2.2:62039270-62039289 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG + chr2.2:62039147-62039166 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG + chr2.2:62038725-62038744 None:intergenic 30.0%
GAGAATGTTATACTTTCTTG+TGG - chr2.2:62038857-62038876 MS.gene002988:intron 30.0%
GTTTATTGATGAGTTATTGG+TGG - chr2.2:62038884-62038903 MS.gene002988:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG - chr2.2:62037541-62037560 MS.gene002988:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG - chr2.2:62038716-62038735 MS.gene002988:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG - chr2.2:62039103-62039122 MS.gene002988:intron 30.0%
TTATTACAAGCTTCCTCAAT+GGG + chr2.2:62037087-62037106 None:intergenic 30.0%
TTGTTTGCCTAATTCTTTGT+TGG - chr2.2:62038715-62038734 MS.gene002988:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG - chr2.2:62038784-62038803 MS.gene002988:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG - chr2.2:62037724-62037743 MS.gene002988:intron 30.0%
!! ACATTTGTAAGAGTGTTGTA+CGG - chr2.2:62037658-62037677 MS.gene002988:intron 30.0%
!! TTGTAATAATGGCTTTGGAT+CGG - chr2.2:62037098-62037117 MS.gene002988:CDS 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG + chr2.2:62039095-62039114 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG + chr2.2:62038484-62038503 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG - chr2.2:62038765-62038784 MS.gene002988:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG + chr2.2:62037950-62037969 None:intergenic 35.0%
ACAGACTGCATCATTACATA+AGG - chr2.2:62039290-62039309 MS.gene002988:intron 35.0%
ACTCCGAAAGATCAGAAAAT+GGG + chr2.2:62037780-62037799 None:intergenic 35.0%
AGCTGTTAAGAAACAAATGC+GGG - chr2.2:62039342-62039361 MS.gene002988:intron 35.0%
ATCATTACATAAGGGAACTC+CGG - chr2.2:62039299-62039318 MS.gene002988:intron 35.0%
ATGATGAAGATTCAACAACG+TGG - chr2.2:62037202-62037221 MS.gene002988:CDS 35.0%
CAGACTGCATCATTACATAA+GGG - chr2.2:62039291-62039310 MS.gene002988:intron 35.0%
CAGTCAAAAGATAAAGAGGT+AGG - chr2.2:62039466-62039485 MS.gene002988:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG + chr2.2:62038370-62038389 None:intergenic 35.0%
GAAGCTTGTAATAATGGCTT+TGG - chr2.2:62037093-62037112 MS.gene002988:CDS 35.0%
TATTACAAGCTTCCTCAATG+GGG + chr2.2:62037086-62037105 None:intergenic 35.0%
TGAATATGATCGCTTACTTG+AGG - chr2.2:62039543-62039562 MS.gene002988:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG - chr2.2:62037203-62037222 MS.gene002988:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG - chr2.2:62038511-62038530 MS.gene002988:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG - chr2.2:62039223-62039242 MS.gene002988:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG - chr2.2:62039512-62039531 MS.gene002988:CDS 35.0%
! GAACCCATTTTCTGATCTTT+CGG - chr2.2:62037774-62037793 MS.gene002988:intron 35.0%
! GTCATATCTAGTTTCCGTAT+CGG + chr2.2:62037588-62037607 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG - chr2.2:62038617-62038636 MS.gene002988:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG - chr2.2:62038616-62038635 MS.gene002988:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG + chr2.2:62037158-62037177 None:intergenic 40.0%
AATACACGTTCACGAGGTAT+AGG + chr2.2:62038456-62038475 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG + chr2.2:62038631-62038650 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG + chr2.2:62038709-62038728 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG + chr2.2:62038634-62038653 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG - chr2.2:62039344-62039363 MS.gene002988:intron 40.0%
CTTAGCCATAAGAACCTGAT+CGG + chr2.2:62037257-62037276 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG - chr2.2:62037280-62037299 MS.gene002988:CDS 40.0%
GACTCCGAAAGATCAGAAAA+TGG + chr2.2:62037781-62037800 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG + chr2.2:62038609-62038628 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG - chr2.2:62039343-62039362 MS.gene002988:intron 40.0%
GTTGTACGGATGTAATACAC+CGG - chr2.2:62037672-62037691 MS.gene002988:intron 40.0%
TCTTCTTGAAGCTACACTCA+TGG - chr2.2:62037279-62037298 MS.gene002988:CDS 40.0%
TGTTAAGAAACAAATGCGGG+GGG - chr2.2:62039345-62039364 MS.gene002988:intron 40.0%
TGTTATTCAAGACCCCATTG+AGG - chr2.2:62037071-62037090 MS.gene002988:CDS 40.0%
TTCTGTCAACAGATTGTAGC+TGG + chr2.2:62039588-62039607 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG - chr2.2:62037240-62037259 MS.gene002988:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG - chr2.2:62038895-62038914 MS.gene002988:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG + chr2.2:62039503-62039522 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG - chr2.2:62039511-62039530 MS.gene002988:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG - chr2.2:62039497-62039516 MS.gene002988:CDS 45.0%
ACATAAGGGAACTCCGGATT+CGG - chr2.2:62039305-62039324 MS.gene002988:intron 45.0%
AGAGGCTTTACCCTGTCAAA+CGG - chr2.2:62038005-62038024 MS.gene002988:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG + chr2.2:62039582-62039601 None:intergenic 45.0%
CGGAGCATAGCAGAAAAATC+AGG - chr2.2:62038076-62038095 MS.gene002988:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG - chr2.2:62038035-62038054 MS.gene002988:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG + chr2.2:62038365-62038384 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG - chr2.2:62037142-62037161 MS.gene002988:CDS 45.0%
GTTCGAAATACACGTTCACG+AGG + chr2.2:62038462-62038481 None:intergenic 45.0%
TCCTACCGATCAGGTTCTTA+TGG - chr2.2:62037249-62037268 MS.gene002988:CDS 45.0%
TCTAGAAGCTGAACCTAGAC+AGG + chr2.2:62038397-62038416 None:intergenic 45.0%
TCTTGAGTTTACTGTGCCTC+TGG - chr2.2:62037966-62037985 MS.gene002988:intron 45.0%
TGTAATACACCGGTGTGTGT+TGG - chr2.2:62037682-62037701 MS.gene002988:intron 45.0%
TTTGACAGGGTAAAGCCTCT+CGG + chr2.2:62038005-62038024 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG - chr2.2:62038894-62038913 MS.gene002988:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG + chr2.2:62037142-62037161 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG + chr2.2:62037582-62037601 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG + chr2.2:62038034-62038053 None:intergenic 45.0%
AAATACGGTGTGGCGCATAG+CGG + chr2.2:62038355-62038374 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG - chr2.2:62038692-62038711 MS.gene002988:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG - chr2.2:62038130-62038149 MS.gene002988:intron 50.0%
AGAGAAAGAGCCTTCACCCT+TGG - chr2.2:62038578-62038597 MS.gene002988:intron 50.0%
ATAATGCTCGCAAGCCACAG+AGG + chr2.2:62039216-62039235 None:intergenic 50.0%
CAACAACGTGGGATCGAAGA+TGG - chr2.2:62037214-62037233 MS.gene002988:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG + chr2.2:62039321-62039340 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG - chr2.2:62038122-62038141 MS.gene002988:intron 50.0%
GAGAAAGAGCCTTCACCCTT+GGG - chr2.2:62038579-62038598 MS.gene002988:intron 50.0%
GAGGCTTTACCCTGTCAAAC+GGG - chr2.2:62038006-62038025 MS.gene002988:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG + chr2.2:62037253-62037272 None:intergenic 50.0%
GGCTGCCTTCAATTCTCGAA+TGG - chr2.2:62037942-62037961 MS.gene002988:intron 50.0%
TCTGCTATGCTCCGCTATAG+CGG + chr2.2:62038070-62038089 None:intergenic 50.0%
TGACAACAGAGCTCCTGTCT+AGG - chr2.2:62038381-62038400 MS.gene002988:intron 50.0%
TGACACTGACACAGACACGT+TGG - chr2.2:62037604-62037623 MS.gene002988:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG - chr2.2:62037921-62037940 MS.gene002988:intron 50.0%
TTGGGTAAACCGGTCACTCT+TGG - chr2.2:62038597-62038616 MS.gene002988:intron 50.0%
! AAGAGTGACCGGTTTACCCA+AGG + chr2.2:62038598-62038617 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG - chr2.2:62037560-62037579 MS.gene002988:intron 50.0%
! AGAGTGACCGGTTTACCCAA+GGG + chr2.2:62038597-62038616 None:intergenic 50.0%
! CGCTTTTGACAACAGAGGAC+AGG + chr2.2:62038037-62038056 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG - chr2.2:62039432-62039451 MS.gene002988:CDS 50.0%
! GCTTTGGATCGGTTGAAACG+AGG - chr2.2:62037109-62037128 MS.gene002988:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG - chr2.2:62038090-62038109 MS.gene002988:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG + chr2.2:62038354-62038373 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG - chr2.2:62037126-62037145 MS.gene002988:CDS 55.0%
AGGGTAAAGCCTCTCGGACT+GGG + chr2.2:62037999-62038018 None:intergenic 55.0%
CAGATTGTAGCTGGTTGCGG+AGG + chr2.2:62039579-62039598 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG - chr2.2:62039318-62039337 MS.gene002988:intron 55.0%
CGTTCACGAGGTATAGGCAC+TGG + chr2.2:62038450-62038469 None:intergenic 55.0%
GATCGGTTGAAACGAGGTCG+TGG - chr2.2:62037115-62037134 MS.gene002988:CDS 55.0%
GCCTTCACCCTTGGGTAAAC+CGG - chr2.2:62038587-62038606 MS.gene002988:intron 55.0%
TCTCCGTGACCAACACACAC+CGG + chr2.2:62037694-62037713 None:intergenic 55.0%
! ACACCGGTGTGTGTTGGTCA+CGG - chr2.2:62037688-62037707 MS.gene002988:intron 55.0%
! ACCGGTTTACCCAAGGGTGA+AGG + chr2.2:62038591-62038610 None:intergenic 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG + chr2.2:62039573-62039592 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG + chr2.2:62038432-62038451 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG + chr2.2:62038433-62038452 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG + chr2.2:62038444-62038463 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG - chr2.2:62037571-62037590 MS.gene002988:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG + chr2.2:62038019-62038038 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG - chr2.2:62038416-62038435 MS.gene002988:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG + chr2.2:62038116-62038135 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG + chr2.2:62038018-62038037 None:intergenic 60.0%
CAGGGTAAAGCCTCTCGGAC+TGG + chr2.2:62038000-62038019 None:intergenic 60.0%
CTATGCTCCGCTATAGCGGC+CGG + chr2.2:62038066-62038085 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG - chr2.2:62039351-62039370 MS.gene002988:intron 60.0%
GGGTAAAGCCTCTCGGACTG+GGG + chr2.2:62037998-62038017 None:intergenic 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG - chr2.2:62038044-62038063 MS.gene002988:intron 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG + chr2.2:62038340-62038359 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG + chr2.2:62038434-62038453 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG + chr2.2:62038343-62038362 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG + chr2.2:62038042-62038061 None:intergenic 60.0%
GCCAACAGGGGAGCTGAGAG+AGG + chr2.2:62038420-62038439 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG - chr2.2:62037987-62038006 MS.gene002988:intron 65.0%
GGGGCTGAGGATGCGAAAGC+TGG - chr2.2:62039364-62039383 MS.gene002988:intron 65.0%
! CGGACTGGGGAAAGAGCCAG+AGG + chr2.2:62037985-62038004 None:intergenic 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG - chr2.2:62038115-62038134 MS.gene002988:intron 65.0%
CTCCGCTATAGCGGCCGGTG+CGG + chr2.2:62038061-62038080 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG - chr2.2:62038099-62038118 MS.gene002988:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG + chr2.2:62038111-62038130 None:intergenic 75.0%
! GGCCGCACCGGCCGCTATAG+CGG - chr2.2:62038056-62038075 MS.gene002988:intron 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG - chr2.2:62038102-62038121 MS.gene002988:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG + chr2.2:62038103-62038122 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG - chr2.2:62038103-62038122 MS.gene002988:intron 85.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 62037058 62039642 62037058 ID=MS.gene002988
chr2.2 mRNA 62037058 62039642 62037058 ID=MS.gene002988.t1;Parent=MS.gene002988
chr2.2 exon 62039399 62039642 62039399 ID=MS.gene002988.t1.exon1;Parent=MS.gene002988.t1
chr2.2 CDS 62039399 62039642 62039399 ID=cds.MS.gene002988.t1;Parent=MS.gene002988.t1
chr2.2 exon 62037058 62037440 62037058 ID=MS.gene002988.t1.exon2;Parent=MS.gene002988.t1
chr2.2 CDS 62037058 62037440 62037058 ID=cds.MS.gene002988.t1;Parent=MS.gene002988.t1
Gene Sequence

>MS.gene002988

ATGATCGCATTGCTGTTATTCAAGACCCCATTGAGGAAGCTTGTAATAATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAAGATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTGTGTATTTTTCTTTTTCTTTTTCATGGGTTGTTGAAAAGTTTTGATTTTTGTTTATTTGCTTGATGAATGAATGAATTTTGTATGAGGAATTGAATTTGATTTATGTTTATGGATTTGGATTTAATGTGATTGCTCTGTTATGTGTAATTGTTTGCATTATTAATTTATTGAGTTTTTAGCATTATTATTTTTGTAAATATGATCAAATAGGTACATTTTTGTAATGTGTATAATTTTGCTTATAATTAAGACTGGACGGAGTATCTGTCAAGCACCGGATCCGATACGGAAACTAGATATGACACTGACACAGACACGTTGGAACAAAGAACGTTTTGTATGAGTTGTGAGATACATTTGTAAGAGTGTTGTACGGATGTAATACACCGGTGTGTGTTGGTCACGGAGATATGAATATATGATCAATCACAAAACCTTTTGGAAATTGAGAAGATCTTCTCGAATTCATGAACCCATTTTCTGATCTTTCGGAGTCATGTTCCCTTTTCCTTTCATTAATGTAGTCAATCTTGCATTGTGATGAATATGTTGTCTCTGTTGTTGCTGATGCAATTGATGAGTGATGATCTCTAGTGATCTAAAAGATTTGTTTGTTTTGCTGCATCTGATGCAGCATGGCTGCCTTCAATTCTCGAATGGTTCTTGAGTTTACTGTGCCTCTGGCTCTTTCCCCAGTCCGAGAGGCTTTACCCTGTCAAACGGGCTCCTCCTGTCCTCTGTTGTCAAAAGCGGCCGCACCGGCCGCTATAGCGGAGCATAGCAGAAAAATCAGGACCACTGCGCCAGGCCGCGTCGGCGGGTATCAGAAGTGGAAAGCGGCAAAGCGGACCTATCAATAGTAAAACAATAACTTTTACTAGTTGTATATAATTGGTATTAGCGATTTTCAATTTTGCTATCCCTTTTATTTCATATTATGAATACTTCATGAAGTTTTGAGTAATGTTTAAGGTATTTTAGTATTTCTTTTGAATAGTATGGTATATAGTATTAAACTTATTAGTGGCTGCACCACCGAAATAGCGCCCGCTATGCGCCACACCGTATTTCTGCATTGACAACAGAGCTCCTGTCTAGGTTCAGCTTCTAGACCTCTCTCAGCTCCCCTGTTGGCACCTCTTCCAGTGCCTATACCTCGTGAACGTGTATTTCGAACCGTGTTTTCCTGAAAAAGAATCACAATGATTCAGCATTCATAAGGCATAAGGATCATATAAACCATATGCATATATCTTATGATTGATTTAGTTAAAGAGAAAGAGCCTTCACCCTTGGGTAAACCGGTCACTCTTGGTATTTTAGCCTCCTAATGGGCTCATATGATTCAGACGCTCAACACTCATATAACTGAAGCTTCTAACTTGTAACTTGTGAGTGAAGCCTCGTTGGTTGTTTGCCTAATTCTTTGTTGGGTTATTCTGTAAATATTTGTGTTTCTTTTTGCTACCGATTTTTTCAATGGTTTAGAATGAATGTTGAGGCAACTTACATGAGATATGTGATCTTCTAAAGTTGAAAAATGTGAGCTTTGGAGAATGTTATACTTTCTTGTGGTATTGTTTATTGATGAGTTATTGGTGGCATTAGCAGGGAGATTGAAATCAGATGTACTATATGATTTGCAATTTTTAGGATTCTCTCTCTCACAACTAGAAGCCATCTAGTATGTTGTTAAACTTTACAACTCAGATTGTATGTAATTTCCTAAGTTCAACATATTTCCAAATTTTTCAAAACATTGCTGTGTTCTTTGATTTTTAATAAGACCGGTCACATCTTAAAACAACATAGCTGAAGAGGTAAAGTTACAATTCCAATCCAACATAAACAATACTGTTGAGTTTCTGAACTGATTGTTCCTTAATATTTAGACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MS.gene002988.t1

MIALLLFKTPLRKLVIMALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEDGASVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM