Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003458.t1 | XP_003607233.2 | 96.6 | 895 | 29 | 1 | 63 | 957 | 63 | 956 | 0.00E+00 | 1654.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003458.t1 | Q9Y5Q9 | 22.7 | 816 | 518 | 11 | 172 | 957 | 154 | 886 | 5.7e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003458.t1 | G7JNI9 | 96.6 | 895 | 29 | 1 | 63 | 957 | 63 | 956 | 0.0e+00 | 1654.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76728 | MS.gene003458 | PPI |
| MS.gene82237 | MS.gene003458 | PPI |
| MS.gene48819 | MS.gene003458 | PPI |
| MS.gene77045 | MS.gene003458 | PPI |
| MS.gene42075 | MS.gene003458 | PPI |
| MS.gene87743 | MS.gene003458 | PPI |
| MS.gene87064 | MS.gene003458 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003458.t1 | MTR_4g074860 | 96.134 | 957 | 36 | 1 | 1 | 957 | 1 | 956 | 0.0 | 1893 |
| MS.gene003458.t1 | MTR_4g074860 | 94.707 | 869 | 45 | 1 | 1 | 869 | 1 | 868 | 0.0 | 1607 |
| MS.gene003458.t1 | MTR_4g079390 | 81.042 | 960 | 156 | 9 | 1 | 957 | 1 | 937 | 0.0 | 1522 |
| MS.gene003458.t1 | MTR_4g074860 | 95.352 | 753 | 34 | 1 | 1 | 753 | 1 | 752 | 0.0 | 1390 |
| MS.gene003458.t1 | MTR_4g074690 | 84.638 | 345 | 40 | 1 | 1 | 345 | 1 | 332 | 0.0 | 580 |
| MS.gene003458.t1 | MTR_4g074700 | 68.317 | 101 | 11 | 2 | 277 | 356 | 1 | 101 | 9.05e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003458.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 95 | 956 | 88 | 895 | 0.0 | 641 |
| MS.gene003458.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 95 | 956 | 88 | 895 | 0.0 | 641 |
| MS.gene003458.t1 | AT1G17680 | 43.448 | 870 | 422 | 13 | 95 | 956 | 88 | 895 | 0.0 | 641 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATCTTTAAATTTC+TGG | 0.073604 | 4.3:+32636183 | None:intergenic |
| AGCTTTAACTTTCAAATTTA+AGG | 0.080716 | 4.3:+32630867 | None:intergenic |
| GTTGAGGAATTTATAAATTT+TGG | 0.115527 | 4.3:-32635374 | MS.gene003458:CDS |
| CCAAAAGTGATCTGCTTAAA+AGG | 0.134984 | 4.3:-32625779 | MS.gene003458:CDS |
| CATCATCTTGTAATGTTTCT+AGG | 0.162444 | 4.3:+32628333 | None:intergenic |
| CTCGGTATTCCATGGATTTC+TGG | 0.186432 | 4.3:+32636162 | None:intergenic |
| TGAGAAGGTGATTGCTATTA+AGG | 0.193370 | 4.3:-32619155 | MS.gene003458:CDS |
| TTCCAAAGCGTTGGATCTTT+TGG | 0.213096 | 4.3:+32633440 | None:intergenic |
| CGCCTTTATTTCCATCAATA+TGG | 0.230843 | 4.3:+32630945 | None:intergenic |
| ACATCAACCCACCATCTATT+TGG | 0.232616 | 4.3:+32628120 | None:intergenic |
| AGCATTCCTCTACAATAATT+TGG | 0.233608 | 4.3:-32622278 | MS.gene003458:CDS |
| GATGATCTTCCTCCTCCTTC+TGG | 0.255549 | 4.3:+32636417 | None:intergenic |
| CGAGGTCGCAGACTCATTTA+TGG | 0.263136 | 4.3:-32630098 | MS.gene003458:CDS |
| TGCAAATGGCCGTCATAAAA+TGG | 0.270751 | 4.3:-32634721 | MS.gene003458:intron |
| CGAAATACACTATCTGTTTC+CGG | 0.273678 | 4.3:+32625738 | None:intergenic |
| TGCTTTCGAAATACAATAAC+TGG | 0.275722 | 4.3:+32631333 | None:intergenic |
| ACATGCTTGGTTGCATTCTC+TGG | 0.290856 | 4.3:+32630133 | None:intergenic |
| TCAAATATTACCTTTCGTTT+AGG | 0.300709 | 4.3:+32627991 | None:intergenic |
| AAGATTAACCAATGGATTCT+TGG | 0.301549 | 4.3:+32622469 | None:intergenic |
| TGATACGAGTCAGGTAAATT+TGG | 0.321774 | 4.3:+32633542 | None:intergenic |
| CTTTCCCCTCCTCAACTAGA+AGG | 0.325341 | 4.3:+32628285 | None:intergenic |
| TCAAAACCTTGTTTAGGATC+TGG | 0.329355 | 4.3:+32622864 | None:intergenic |
| CACAAGGGAGATTCTGTGTT+TGG | 0.332550 | 4.3:+32623367 | None:intergenic |
| ACACAATCAAAACCTTGTTT+AGG | 0.335593 | 4.3:+32622858 | None:intergenic |
| GGACTTGTCCATGGTGCAAT+TGG | 0.341743 | 4.3:-32633512 | MS.gene003458:CDS |
| TAGCATCCTTGCAAATGTAT+AGG | 0.352395 | 4.3:-32623215 | MS.gene003458:CDS |
| AAAGATTATTGTTCCGTTTG+AGG | 0.352442 | 4.3:-32618977 | None:intergenic |
| GACTTGTCCATGGTGCAATT+GGG | 0.352525 | 4.3:-32633511 | MS.gene003458:CDS |
| GCTTTAACTTTCAAATTTAA+GGG | 0.357085 | 4.3:+32630868 | None:intergenic |
| CAAAACCTTGTTTAGGATCT+GGG | 0.361830 | 4.3:+32622865 | None:intergenic |
| CGGTGACGGTGTAAATCCTT+TGG | 0.370701 | 4.3:-32636243 | MS.gene003458:CDS |
| GGCCTTGATCAACTTGGCGC+TGG | 0.372728 | 4.3:-32622344 | MS.gene003458:CDS |
| GTTCAACTTGACCACACTTT+TGG | 0.373143 | 4.3:+32631046 | None:intergenic |
| AATGAGAAGCTTCGATCTCT+TGG | 0.381601 | 4.3:-32623129 | MS.gene003458:CDS |
| GCAGACTCATTTATGGGTCT+TGG | 0.384921 | 4.3:-32630091 | MS.gene003458:CDS |
| GACTCCTAAGACTACTATCT+TGG | 0.389070 | 4.3:+32631296 | None:intergenic |
| ATAAATTCCTCAACCTCAGC+TGG | 0.392533 | 4.3:+32635383 | None:intergenic |
| TGCCATATTGATGGAAATAA+AGG | 0.393502 | 4.3:-32630947 | MS.gene003458:CDS |
| AGCATCCTTGCAAATGTATA+GGG | 0.393989 | 4.3:-32623214 | MS.gene003458:CDS |
| TGGGGATCACGAAAATGAAA+TGG | 0.398538 | 4.3:-32633492 | MS.gene003458:CDS |
| TTCGTTCGTAACAATGATTC+CGG | 0.401375 | 4.3:-32636218 | MS.gene003458:CDS |
| GCAGAGCAAACCGTTGCTAC+AGG | 0.402047 | 4.3:-32625826 | MS.gene003458:intron |
| AAAGCCGAGGCAGTGGCCTC+TGG | 0.403885 | 4.3:-32623534 | MS.gene003458:CDS |
| TCTACTTGGTGCCATATTGA+TGG | 0.405536 | 4.3:-32630956 | MS.gene003458:CDS |
| ACACTTGCATTTACTCCATC+TGG | 0.405571 | 4.3:+32630985 | None:intergenic |
| TCGCTGTCTTCTACCGCCCT+TGG | 0.407223 | 4.3:+32636395 | None:intergenic |
| TGCAGAGAACAAAATGATAT+TGG | 0.410117 | 4.3:-32631361 | MS.gene003458:intron |
| TCATCTTGGAAACTTTGAAA+TGG | 0.412757 | 4.3:-32630830 | MS.gene003458:CDS |
| CTGTCTCCTCCAAAGGAATC+TGG | 0.412972 | 4.3:-32628242 | MS.gene003458:intron |
| TATAAAGATTCCTGTGAGGC+TGG | 0.417129 | 4.3:+32619235 | None:intergenic |
| TACTAACATCAATGATTAGC+TGG | 0.418868 | 4.3:+32623317 | None:intergenic |
| TGGAGGAGACAGCAAGGAAA+TGG | 0.419772 | 4.3:+32628253 | None:intergenic |
| TCCTTGCCGCGTCTTGATGA+TGG | 0.424711 | 4.3:+32622519 | None:intergenic |
| AGATTAACCAATGGATTCTT+GGG | 0.425861 | 4.3:+32622470 | None:intergenic |
| TGACTCGGATGATGAGCTTC+AGG | 0.426120 | 4.3:-32623490 | MS.gene003458:intron |
| CGAAAAGATATCACAGATGT+TGG | 0.427095 | 4.3:-32634763 | MS.gene003458:CDS |
| ACTCCTAAGACTACTATCTT+GGG | 0.427608 | 4.3:+32631297 | None:intergenic |
| AGGCAATTGAGAAGGAGAAA+AGG | 0.427635 | 4.3:-32623557 | MS.gene003458:CDS |
| CTCCAAAAGATCCAACGCTT+TGG | 0.429606 | 4.3:-32633442 | MS.gene003458:CDS |
| TATCAATCTCTCTCTGAAAT+CGG | 0.431671 | 4.3:-32623178 | MS.gene003458:CDS |
| GTAAAAGTTTATAAGCTTCA+AGG | 0.434307 | 4.3:+32622492 | None:intergenic |
| TGCTAGATGTTATCAAGCGT+TGG | 0.439832 | 4.3:-32629444 | MS.gene003458:CDS |
| GCCTTGATCAACTTGGCGCT+GGG | 0.442089 | 4.3:-32622343 | MS.gene003458:CDS |
| TAGTTACCGGTGAGATTGTA+GGG | 0.443984 | 4.3:+32636112 | None:intergenic |
| TTACCAGTACCAGATTCCTT+TGG | 0.444295 | 4.3:+32628233 | None:intergenic |
| GTTATCAAGCGTTGGGAGAA+AGG | 0.444433 | 4.3:-32629436 | MS.gene003458:CDS |
| TTAAATTTGAAAGTTAAAGC+TGG | 0.445910 | 4.3:-32630865 | MS.gene003458:CDS |
| AAGGTCGCAGTAACCAGGTT+TGG | 0.447194 | 4.3:+32619075 | None:intergenic |
| TTAGTTACCGGTGAGATTGT+AGG | 0.449175 | 4.3:+32636111 | None:intergenic |
| GGAATCTGCCATGTTCATCT+TGG | 0.450294 | 4.3:-32630844 | MS.gene003458:CDS |
| TTCAAAGATTCACGTACTAA+AGG | 0.452862 | 4.3:+32628024 | None:intergenic |
| GCTAGATGTTATCAAGCGTT+GGG | 0.456876 | 4.3:-32629443 | MS.gene003458:CDS |
| TCAAAGATTCACGTACTAAA+GGG | 0.458130 | 4.3:+32628025 | None:intergenic |
| GGTAGAGAAACTTGCTGCTC+CGG | 0.460694 | 4.3:-32625757 | MS.gene003458:CDS |
| TGTTGAAGCACGCATAACTT+TGG | 0.467038 | 4.3:-32628312 | MS.gene003458:CDS |
| GGGGATCACGAAAATGAAAT+GGG | 0.467202 | 4.3:-32633491 | MS.gene003458:CDS |
| CCAGTACCAGATTCCTTTGG+AGG | 0.471523 | 4.3:+32628236 | None:intergenic |
| ATTTGTCATGTCTTGTATCT+CGG | 0.471744 | 4.3:+32622621 | None:intergenic |
| CAAAAGTGATCTGCTTAAAA+GGG | 0.472363 | 4.3:-32625778 | MS.gene003458:CDS |
| GAGGTCGCAGACTCATTTAT+GGG | 0.475412 | 4.3:-32630097 | MS.gene003458:CDS |
| TGGAAACTTTGAAATGGCTC+AGG | 0.479846 | 4.3:-32630824 | MS.gene003458:intron |
| AATTGATTGCCCAGCCTCAC+AGG | 0.480864 | 4.3:-32619245 | MS.gene003458:CDS |
| AAGGATCATGTAACCTCAAA+CGG | 0.483626 | 4.3:+32618964 | None:intergenic |
| AAGCATCAGTGTGTTGTACA+AGG | 0.483840 | 4.3:-32622304 | MS.gene003458:CDS |
| CATAAATGAGTCTGCGACCT+CGG | 0.485715 | 4.3:+32630099 | None:intergenic |
| CCAAGGGTGTGATACGAGTC+AGG | 0.486679 | 4.3:+32633533 | None:intergenic |
| ACCATACCCTGTGTCTTCAT+TGG | 0.487379 | 4.3:+32636367 | None:intergenic |
| GAAGATGATCAATTCATCTT+CGG | 0.487604 | 4.3:-32636263 | MS.gene003458:CDS |
| GGCTTCCCTTCTAGTTGAGG+AGG | 0.488281 | 4.3:-32628291 | MS.gene003458:CDS |
| GCCTACGTTCACTATGCAAA+TGG | 0.490448 | 4.3:-32634735 | MS.gene003458:CDS |
| CCTGACTCGTATCACACCCT+TGG | 0.497427 | 4.3:-32633533 | MS.gene003458:CDS |
| GAAAAGGAAAGCCGAGGCAG+TGG | 0.498777 | 4.3:-32623541 | MS.gene003458:CDS |
| TTTGGCTTCCCTTCTAGTTG+AGG | 0.498866 | 4.3:-32628294 | MS.gene003458:CDS |
| TTCCTTGCTGTCTCCTCCAA+AGG | 0.507093 | 4.3:-32628249 | MS.gene003458:CDS |
| CCATTGGTTAATCTTTGTGT+TGG | 0.507574 | 4.3:-32622461 | MS.gene003458:intron |
| GCTTCCCTTCTAGTTGAGGA+GGG | 0.511143 | 4.3:-32628290 | MS.gene003458:CDS |
| CTGCGAAGGTCGCAGTAACC+AGG | 0.512482 | 4.3:+32619070 | None:intergenic |
| TGTAATCTTCACAAAGATGA+AGG | 0.514832 | 4.3:-32623346 | MS.gene003458:CDS |
| TGTAACATATTTCAGATCAG+AGG | 0.517237 | 4.3:-32628078 | MS.gene003458:CDS |
| CACACCCTTGGACTTGTCCA+TGG | 0.519632 | 4.3:-32633521 | MS.gene003458:CDS |
| ATTCTGAAAAGCCAAATAGA+TGG | 0.519704 | 4.3:-32628131 | MS.gene003458:CDS |
| CTGTATTGCATGAAGTTGTC+AGG | 0.521819 | 4.3:-32633571 | MS.gene003458:CDS |
| AGCTTGGAATTGCTACTACA+AGG | 0.529259 | 4.3:-32622799 | MS.gene003458:CDS |
| GAAAAGATATCACAGATGTT+GGG | 0.529261 | 4.3:-32634762 | MS.gene003458:CDS |
| AGACTTCTTCTAAGAAGGCA+AGG | 0.529519 | 4.3:-32635430 | MS.gene003458:CDS |
| ATATACTTGTTCATAAGCCT+CGG | 0.530001 | 4.3:+32631228 | None:intergenic |
| GGTAAACCCAGCTGAGGTTG+AGG | 0.531045 | 4.3:-32635390 | MS.gene003458:CDS |
| TTTGATTTGCCCTGTAGCAA+CGG | 0.533939 | 4.3:+32625816 | None:intergenic |
| TGCACTAAAAGCAGCAGCTA+AGG | 0.541266 | 4.3:-32631182 | MS.gene003458:intron |
| TGAAGAGACTTCTTCTAAGA+AGG | 0.542455 | 4.3:-32635435 | MS.gene003458:CDS |
| ACCCAGCGCCAAGTTGATCA+AGG | 0.542488 | 4.3:+32622342 | None:intergenic |
| GGAGATCTGTAAGAACAGCC+AGG | 0.543215 | 4.3:-32622257 | MS.gene003458:intron |
| TAAACTGATGCGCAGAAATG+AGG | 0.544020 | 4.3:+32622552 | None:intergenic |
| ATCGAGAGCTCGGTATTCCA+TGG | 0.544191 | 4.3:+32636154 | None:intergenic |
| CAAAGTTTCCAAGATGAACA+TGG | 0.545302 | 4.3:+32630836 | None:intergenic |
| GAAACAGATAGTGTATTTCG+AGG | 0.546110 | 4.3:-32625735 | MS.gene003458:CDS |
| ACTAACATCAATGATTAGCT+GGG | 0.546575 | 4.3:+32623318 | None:intergenic |
| AGGAACGGCCTTGATCAACT+TGG | 0.548967 | 4.3:-32622350 | MS.gene003458:CDS |
| GGTGATCGACTCAACATGCT+TGG | 0.549071 | 4.3:+32630120 | None:intergenic |
| CAGTGGCCTCTGGAATTGAC+TGG | 0.549957 | 4.3:-32623524 | MS.gene003458:CDS |
| CTTCCCTTCTAGTTGAGGAG+GGG | 0.550556 | 4.3:-32628289 | MS.gene003458:CDS |
| AGAGGGTAAGAGACAAAGAA+AGG | 0.552158 | 4.3:-32635351 | MS.gene003458:intron |
| GCCATCATCAAGACGCGGCA+AGG | 0.554004 | 4.3:-32622520 | MS.gene003458:CDS |
| GCCAATGAAGACACAGGGTA+TGG | 0.556221 | 4.3:-32636368 | MS.gene003458:CDS |
| ATGCACAGAGTGTTGCAGCT+TGG | 0.557784 | 4.3:-32622815 | MS.gene003458:CDS |
| ATAGAACAATCTCAAGTGGT+TGG | 0.557899 | 4.3:-32630901 | MS.gene003458:CDS |
| TTGCACCATGGACAAGTCCA+AGG | 0.558983 | 4.3:+32633516 | None:intergenic |
| TAAATTCCTCAACCTCAGCT+GGG | 0.559401 | 4.3:+32635384 | None:intergenic |
| CTGAAAAGCCAAATAGATGG+TGG | 0.560031 | 4.3:-32628128 | MS.gene003458:CDS |
| CACTCACCGATCAGCTGATG+TGG | 0.561902 | 4.3:+32625698 | None:intergenic |
| ACTTGTCCATGGTGCAATTG+GGG | 0.566458 | 4.3:-32633510 | MS.gene003458:CDS |
| GTAACATATTTCAGATCAGA+GGG | 0.567514 | 4.3:-32628077 | MS.gene003458:CDS |
| ATAAAGATTCCTGTGAGGCT+GGG | 0.568220 | 4.3:+32619236 | None:intergenic |
| CAGAGCAAACCGTTGCTACA+GGG | 0.574847 | 4.3:-32625825 | MS.gene003458:CDS |
| AATGGAAGAGATTAACCAGA+AGG | 0.576659 | 4.3:-32636432 | MS.gene003458:CDS |
| TTTCCCCTCCTCAACTAGAA+GGG | 0.577242 | 4.3:+32628286 | None:intergenic |
| AGATCTCCAAATTATTGTAG+AGG | 0.578673 | 4.3:+32622272 | None:intergenic |
| TGCTTCCCTATACATTTGCA+AGG | 0.578680 | 4.3:+32623209 | None:intergenic |
| CTCCTAAGACTACTATCTTG+GGG | 0.582097 | 4.3:+32631298 | None:intergenic |
| GATCAATTCATCTTCGGTGA+CGG | 0.585305 | 4.3:-32636257 | MS.gene003458:CDS |
| TTTGGAAGACGCTTTATGTG+TGG | 0.586815 | 4.3:-32633424 | MS.gene003458:CDS |
| GCTTTCGGTTATCGAGAGCT+CGG | 0.586940 | 4.3:+32636144 | None:intergenic |
| AGGAGGAGGAAGATCATCCA+AGG | 0.587252 | 4.3:-32636412 | MS.gene003458:CDS |
| GTCAATGAAAATTCCAAACC+TGG | 0.588858 | 4.3:-32619088 | MS.gene003458:CDS |
| TAAAGCGTCTTCCAAAGCGT+TGG | 0.591231 | 4.3:+32633431 | None:intergenic |
| AGAAGAAGAAGAAAACGATA+CGG | 0.591701 | 4.3:-32636291 | MS.gene003458:CDS |
| TGTAAGCTGCCTCTCTGCGA+AGG | 0.596269 | 4.3:+32619056 | None:intergenic |
| GGCAGCAATATATTATGAGA+AGG | 0.596270 | 4.3:-32619170 | MS.gene003458:CDS |
| AACTACCCCTACAATCTCAC+CGG | 0.596811 | 4.3:-32636118 | MS.gene003458:intron |
| AATTCCAGAGGCCACTGCCT+CGG | 0.597422 | 4.3:+32623530 | None:intergenic |
| AGATTACCACCAGAAATCCA+TGG | 0.600997 | 4.3:-32636171 | MS.gene003458:CDS |
| CGTGATCCCCAATTGCACCA+TGG | 0.601775 | 4.3:+32633504 | None:intergenic |
| TTCCTTTGGAGGAGACAGCA+AGG | 0.602076 | 4.3:+32628247 | None:intergenic |
| ATTGCATGAAGTTGTCAGGC+TGG | 0.602963 | 4.3:-32633567 | MS.gene003458:CDS |
| CTGGCGAAGTGATGATGACT+CGG | 0.603010 | 4.3:-32623505 | MS.gene003458:CDS |
| TCATGTTGGTCTTGTAACAC+TGG | 0.603510 | 4.3:-32619191 | MS.gene003458:CDS |
| GACTTCTTCTAAGAAGGCAA+GGG | 0.604579 | 4.3:-32635429 | MS.gene003458:CDS |
| TGTTGCAACTCCTAAACGAA+AGG | 0.605260 | 4.3:-32628001 | MS.gene003458:intron |
| AGAGATTAACCAGAAGGAGG+AGG | 0.605787 | 4.3:-32636426 | MS.gene003458:CDS |
| ATGTAGCCACATCAGCTGAT+CGG | 0.606044 | 4.3:-32625704 | MS.gene003458:intron |
| TATCTGAAGAATAAACCAGA+TGG | 0.610837 | 4.3:-32631000 | MS.gene003458:CDS |
| TGAGGAAAAGGCAATTGAGA+AGG | 0.611096 | 4.3:-32623565 | MS.gene003458:CDS |
| ATCTTTGTGAAGATTACACA+AGG | 0.612893 | 4.3:+32623351 | None:intergenic |
| TGCGCAGAAATGAGGATAGG+AGG | 0.613954 | 4.3:+32622560 | None:intergenic |
| GCAAGTGTAGTTGATCTACT+TGG | 0.615929 | 4.3:-32630970 | MS.gene003458:CDS |
| GTACATAGAACAATCTCAAG+TGG | 0.616481 | 4.3:-32630905 | MS.gene003458:CDS |
| AAAACCTTGTTTAGGATCTG+GGG | 0.616944 | 4.3:+32622866 | None:intergenic |
| TGAAAAGCCAAATAGATGGT+GGG | 0.616970 | 4.3:-32628127 | MS.gene003458:CDS |
| TTGTTACGAACGAAGTCCAA+AGG | 0.617644 | 4.3:+32636227 | None:intergenic |
| GACAATGCCAATGAAGACAC+AGG | 0.618838 | 4.3:-32636374 | MS.gene003458:CDS |
| TGATGCGCAGAAATGAGGAT+AGG | 0.622178 | 4.3:+32622557 | None:intergenic |
| GTGTTACAAGACCAACATGA+TGG | 0.623553 | 4.3:+32619194 | None:intergenic |
| GGTATTCCATGGATTTCTGG+TGG | 0.631841 | 4.3:+32636165 | None:intergenic |
| GGAAGAGATTAACCAGAAGG+AGG | 0.636708 | 4.3:-32636429 | MS.gene003458:CDS |
| TGCACCATGGACAAGTCCAA+GGG | 0.636862 | 4.3:+32633517 | None:intergenic |
| TGAAGACACAGGGTATGGTA+CGG | 0.639174 | 4.3:-32636363 | MS.gene003458:CDS |
| GCTACTACAAGGTCATCTCA+AGG | 0.650177 | 4.3:-32622788 | MS.gene003458:intron |
| AGAAGAAGAAAACGATACGG+TGG | 0.651921 | 4.3:-32636288 | MS.gene003458:CDS |
| CCAACACAAAGATTAACCAA+TGG | 0.654625 | 4.3:+32622461 | None:intergenic |
| GGGTATGGTACGGAAGAGAA+CGG | 0.656026 | 4.3:-32636353 | MS.gene003458:CDS |
| TTTCTGGTACAAATTAACAC+CGG | 0.660458 | 4.3:+32636199 | None:intergenic |
| GCTCGCGCATACCATCATGT+TGG | 0.668830 | 4.3:-32619205 | MS.gene003458:CDS |
| TCCTAAGACTACTATCTTGG+GGG | 0.670783 | 4.3:+32631299 | None:intergenic |
| GGAGGAGGAAGATCATCCAA+GGG | 0.676624 | 4.3:-32636411 | MS.gene003458:CDS |
| CTAACATCAATGATTAGCTG+GGG | 0.678208 | 4.3:+32623319 | None:intergenic |
| GAAGGAGAAAAGGAAAGCCG+AGG | 0.681747 | 4.3:-32623547 | MS.gene003458:CDS |
| ACTTCGCCAGTCAATTCCAG+AGG | 0.684911 | 4.3:+32623518 | None:intergenic |
| AGTTACCGGTGAGATTGTAG+GGG | 0.692832 | 4.3:+32636113 | None:intergenic |
| GGAGGAAGATCATCCAAGGG+CGG | 0.693061 | 4.3:-32636408 | MS.gene003458:CDS |
| AGCACCCCAGATCCTAAACA+AGG | 0.697620 | 4.3:-32622870 | MS.gene003458:CDS |
| TTACTGCGACCTTCGCAGAG+AGG | 0.702009 | 4.3:-32619065 | MS.gene003458:CDS |
| ACAATGCCAATGAAGACACA+GGG | 0.704693 | 4.3:-32636373 | MS.gene003458:CDS |
| TCTTTGTGAAGATTACACAA+GGG | 0.712083 | 4.3:+32623352 | None:intergenic |
| ATGTAGCCATCATCAAGACG+CGG | 0.722082 | 4.3:-32622525 | MS.gene003458:CDS |
| GCCATTTGCATAGTGAACGT+AGG | 0.728917 | 4.3:+32634734 | None:intergenic |
| GTTATATAAAGATTCCTGTG+AGG | 0.729306 | 4.3:+32619231 | None:intergenic |
| GCATGTTGAGTCGATCACCG+AGG | 0.779874 | 4.3:-32630116 | MS.gene003458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32618979 | 32636453 | 32618979 | ID=MS.gene003458 |
| chr4.3 | mRNA | 32618979 | 32636453 | 32618979 | ID=MS.gene003458.t1;Parent=MS.gene003458 |
| chr4.3 | exon | 32636119 | 32636453 | 32636119 | ID=MS.gene003458.t1.exon1;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32636119 | 32636453 | 32636119 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32635352 | 32635457 | 32635352 | ID=MS.gene003458.t1.exon2;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32635352 | 32635457 | 32635352 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32634722 | 32634835 | 32634722 | ID=MS.gene003458.t1.exon3;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32634722 | 32634835 | 32634722 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32633419 | 32633600 | 32633419 | ID=MS.gene003458.t1.exon4;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32633419 | 32633600 | 32633419 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32631183 | 32631378 | 32631183 | ID=MS.gene003458.t1.exon5;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32631183 | 32631378 | 32631183 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32630825 | 32631073 | 32630825 | ID=MS.gene003458.t1.exon6;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32630825 | 32631073 | 32630825 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32630030 | 32630176 | 32630030 | ID=MS.gene003458.t1.exon7;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32630030 | 32630176 | 32630030 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32629408 | 32629486 | 32629408 | ID=MS.gene003458.t1.exon8;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32629408 | 32629486 | 32629408 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32628243 | 32628356 | 32628243 | ID=MS.gene003458.t1.exon9;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32628243 | 32628356 | 32628243 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32628002 | 32628168 | 32628002 | ID=MS.gene003458.t1.exon10;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32628002 | 32628168 | 32628002 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32625705 | 32625844 | 32625705 | ID=MS.gene003458.t1.exon11;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32625705 | 32625844 | 32625705 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32623491 | 32623617 | 32623491 | ID=MS.gene003458.t1.exon12;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32623491 | 32623617 | 32623491 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32623324 | 32623392 | 32623324 | ID=MS.gene003458.t1.exon13;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32623324 | 32623392 | 32623324 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32623124 | 32623250 | 32623124 | ID=MS.gene003458.t1.exon14;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32623124 | 32623250 | 32623124 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32622789 | 32622903 | 32622789 | ID=MS.gene003458.t1.exon15;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32622789 | 32622903 | 32622789 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32622462 | 32622652 | 32622462 | ID=MS.gene003458.t1.exon16;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32622462 | 32622652 | 32622462 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32622258 | 32622370 | 32622258 | ID=MS.gene003458.t1.exon17;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32622258 | 32622370 | 32622258 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| chr4.3 | exon | 32618979 | 32619281 | 32618979 | ID=MS.gene003458.t1.exon18;Parent=MS.gene003458.t1 |
| chr4.3 | CDS | 32618979 | 32619281 | 32618979 | ID=cds.MS.gene003458.t1;Parent=MS.gene003458.t1 |
| Gene Sequence |
| Protein sequence |
