Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48819.t1 | KEH29211.1 | 97.5 | 204 | 5 | 0 | 1 | 204 | 1 | 204 | 3.50E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48819.t1 | P26357 | 95.0 | 200 | 10 | 0 | 1 | 200 | 1 | 200 | 8.1e-103 | 374.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48819.t1 | A0A072UID4 | 97.5 | 204 | 5 | 0 | 1 | 204 | 1 | 204 | 2.5e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48819.t1 | MTR_4g029010 | 97.549 | 204 | 5 | 0 | 1 | 204 | 1 | 204 | 1.41e-148 | 411 |
| MS.gene48819.t1 | MTR_7g072580 | 94.500 | 200 | 11 | 0 | 1 | 200 | 1 | 200 | 6.38e-140 | 389 |
| MS.gene48819.t1 | MTR_7g072580 | 93.103 | 203 | 14 | 0 | 1 | 203 | 1 | 203 | 8.45e-140 | 390 |
| MS.gene48819.t1 | MTR_4g029010 | 98.621 | 145 | 1 | 1 | 1 | 145 | 1 | 144 | 1.86e-102 | 292 |
| MS.gene48819.t1 | MTR_4g029010 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 4.35e-102 | 292 |
| MS.gene48819.t1 | MTR_3g065900 | 69.154 | 201 | 62 | 0 | 1 | 201 | 1 | 201 | 4.38e-97 | 281 |
| MS.gene48819.t1 | MTR_7g072580 | 95.070 | 142 | 7 | 0 | 1 | 142 | 1 | 142 | 5.20e-97 | 279 |
| MS.gene48819.t1 | MTR_3g066070 | 69.886 | 176 | 53 | 0 | 26 | 201 | 59 | 234 | 4.00e-83 | 246 |
| MS.gene48819.t1 | MTR_3g065900 | 62.000 | 200 | 59 | 1 | 1 | 200 | 15 | 197 | 2.08e-80 | 238 |
| MS.gene48819.t1 | MTR_3g066070 | 68.571 | 175 | 52 | 1 | 26 | 200 | 59 | 230 | 3.47e-78 | 234 |
| MS.gene48819.t1 | MTR_3g066070 | 68.571 | 175 | 52 | 1 | 26 | 200 | 59 | 230 | 3.47e-78 | 234 |
| MS.gene48819.t1 | MTR_3g066070 | 61.932 | 176 | 50 | 1 | 26 | 201 | 59 | 217 | 2.59e-68 | 208 |
| MS.gene48819.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 10 | 167 | 1.04e-66 | 202 |
| MS.gene48819.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 1.60e-66 | 204 |
| MS.gene48819.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 1.60e-66 | 204 |
| MS.gene48819.t1 | MTR_3g066070 | 59.286 | 140 | 40 | 1 | 62 | 201 | 1 | 123 | 3.83e-49 | 156 |
| MS.gene48819.t1 | MTR_3g066070 | 58.120 | 117 | 32 | 1 | 26 | 142 | 59 | 158 | 3.09e-37 | 127 |
| MS.gene48819.t1 | MTR_4g122610 | 54.348 | 138 | 35 | 5 | 1 | 111 | 1 | 137 | 3.37e-37 | 127 |
| MS.gene48819.t1 | MTR_4g122635 | 48.571 | 140 | 46 | 5 | 6 | 142 | 1 | 117 | 4.40e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48819.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 3.97e-135 | 377 |
| MS.gene48819.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 3.97e-135 | 377 |
| MS.gene48819.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 3.97e-135 | 377 |
| MS.gene48819.t1 | AT3G13445 | 90.500 | 200 | 19 | 0 | 1 | 200 | 1 | 200 | 1.51e-133 | 373 |
| MS.gene48819.t1 | AT1G55520 | 93.785 | 177 | 11 | 0 | 1 | 177 | 1 | 177 | 6.76e-121 | 340 |
| MS.gene48819.t1 | AT3G13445 | 89.730 | 185 | 19 | 0 | 1 | 185 | 1 | 185 | 7.74e-121 | 340 |
Find 52 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTTCAATGCTAGGTTTA+AGG | 0.177730 | 4.4:+73847655 | MS.gene48819:CDS |
| TATTGTTTCAACAGTCAATT+TGG | 0.195167 | 4.4:+73846514 | MS.gene48819:CDS |
| CATCTTTGCTTCTGGCAAAA+TGG | 0.262684 | 4.4:+73846962 | MS.gene48819:CDS |
| TATGAACCTGAGCTGTTTCC+CGG | 0.266557 | 4.4:+73848189 | MS.gene48819:CDS |
| TAGCATTGAAGCCAAGCTTT+TGG | 0.302360 | 4.4:-73847646 | None:intergenic |
| ACCCTGTGCTTACTGAGTTC+AGG | 0.334879 | 4.4:+73848419 | MS.gene48819:CDS |
| GATCTAGCGAAACATCCTTC+TGG | 0.344452 | 4.4:+73845595 | MS.gene48819:CDS |
| ACTGCACTCATCTTTGCTTC+TGG | 0.346245 | 4.4:+73846954 | MS.gene48819:CDS |
| CAAGACCCTCCAACCGTATT+GGG | 0.367935 | 4.4:-73847861 | None:intergenic |
| GAGTGAGCAACAGTCTAAAT+TGG | 0.370609 | 4.4:+73847425 | MS.gene48819:CDS |
| TCTGGAAAGATTGTTCTAAC+AGG | 0.377671 | 4.4:+73848261 | MS.gene48819:CDS |
| AAAATTAGCAAGACTATCTT+CGG | 0.380946 | 4.4:-73848234 | None:intergenic |
| TTCAAGATTCAGAACATTGT+TGG | 0.416837 | 4.4:+73847820 | MS.gene48819:CDS |
| GCAAGACCCTCCAACCGTAT+TGG | 0.421333 | 4.4:-73847862 | None:intergenic |
| TGTACTCTGCATTACGAGCT+TGG | 0.428829 | 4.4:-73846568 | None:intergenic |
| ATCTAGCGAAACATCCTTCT+GGG | 0.437658 | 4.4:+73845596 | MS.gene48819:CDS |
| AAAAGCTTGGCTTCAATGCT+AGG | 0.438170 | 4.4:+73847648 | MS.gene48819:CDS |
| GAGGGTCTTGCATATTCCCA+TGG | 0.454651 | 4.4:+73847874 | MS.gene48819:CDS |
| TTAAGGTTCATGGCTGATCA+AGG | 0.469990 | 4.4:+73845550 | None:intergenic |
| AGTCAATTTGGACACTAAGT+TGG | 0.477037 | 4.4:+73846526 | MS.gene48819:CDS |
| AGGGTCTTGCATATTCCCAT+GGG | 0.478905 | 4.4:+73847875 | MS.gene48819:CDS |
| GTCTAAATTGGCAGCAAGGA+AGG | 0.482016 | 4.4:+73847437 | MS.gene48819:CDS |
| CTATCTTCGGTTTCTTCATA+CGG | 0.487647 | 4.4:-73848221 | None:intergenic |
| GTTTCGCTGCTGTCATTATG+AGG | 0.490566 | 4.4:+73846913 | MS.gene48819:CDS |
| ATTAACCCGGGAAACAGCTC+AGG | 0.491192 | 4.4:-73848195 | None:intergenic |
| TTCCTGAACTCAGTAAGCAC+AGG | 0.492115 | 4.4:-73848421 | None:intergenic |
| CTTCATACGGTAGATTAACC+CGG | 0.497293 | 4.4:-73848208 | None:intergenic |
| CAAGTTCCCAATACGGTTGG+AGG | 0.507180 | 4.4:+73847855 | MS.gene48819:CDS |
| GGATGTTTCGCTAGATCCAC+AGG | 0.507959 | 4.4:-73845589 | None:intergenic |
| GTGATGTCAAGTTCCCAATA+CGG | 0.512187 | 4.4:+73847848 | MS.gene48819:CDS |
| GCCCGTATCATCCAAAAGCT+TGG | 0.528418 | 4.4:+73847635 | MS.gene48819:CDS |
| TGGTATGACTAGGTTTGCAC+TGG | 0.528649 | 4.4:+73847396 | MS.gene48819:intron |
| CTTGTACTATTAGGTGAGAG+AGG | 0.551201 | 4.4:+73848369 | MS.gene48819:intron |
| GTTCATGGCTGATCAAGGAT+TGG | 0.555740 | 4.4:+73845555 | None:intergenic |
| ATGGCTGATCAAGGATTGGA+AGG | 0.558814 | 4.4:+73845559 | MS.gene48819:CDS |
| ATGAACCTGAGCTGTTTCCC+GGG | 0.563246 | 4.4:+73848190 | MS.gene48819:CDS |
| CACAGGGTATATTTGCTCAA+AGG | 0.564184 | 4.4:-73848404 | None:intergenic |
| AACAGTCTAAATTGGCAGCA+AGG | 0.569501 | 4.4:+73847433 | MS.gene48819:CDS |
| GATTGTTCTAACAGGAGCCA+AGG | 0.576547 | 4.4:+73848269 | MS.gene48819:CDS |
| TTAGATACTCACTGAAGGGT+AGG | 0.578649 | 4.4:-73845625 | None:intergenic |
| TACACTAGAGAAAGCCCCAT+GGG | 0.590023 | 4.4:-73847890 | None:intergenic |
| TGTCAAGTTCCCAATACGGT+TGG | 0.593973 | 4.4:+73847852 | MS.gene48819:CDS |
| TCCTGAACTCAGTAAGCACA+GGG | 0.600156 | 4.4:-73848420 | None:intergenic |
| TTCATACGGTAGATTAACCC+GGG | 0.608069 | 4.4:-73848207 | None:intergenic |
| GTTTCGCTAGATCCACAGGT+TGG | 0.617374 | 4.4:-73845585 | None:intergenic |
| AAGTTCCCAATACGGTTGGA+GGG | 0.627507 | 4.4:+73847856 | MS.gene48819:CDS |
| ATTGGAAGGGAGCCAACCTG+TGG | 0.653530 | 4.4:+73845573 | MS.gene48819:CDS |
| TGGCTGATCAAGGATTGGAA+GGG | 0.656266 | 4.4:+73845560 | MS.gene48819:CDS |
| TAATGCAGAGTACAATCCCA+AGG | 0.657375 | 4.4:+73846577 | MS.gene48819:CDS |
| AGGGTAGGCACAATCCCAGA+AGG | 0.661454 | 4.4:-73845610 | None:intergenic |
| GGGTCTTGCATATTCCCATG+GGG | 0.664391 | 4.4:+73847876 | MS.gene48819:CDS |
| TTACACTAGAGAAAGCCCCA+TGG | 0.679761 | 4.4:-73847891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTGAATCATAATTAGA+GGG | + | chr4.4:73845685-73845704 | MS.gene48819:intron | 15.0% |
| !! | TTATTATTTACTTTGAATTC+TGG | + | chr4.4:73846411-73846430 | MS.gene48819:intron | 15.0% |
| !! | TTTAAGGAAAAATAACAAAA+GGG | - | chr4.4:73848315-73848334 | None:intergenic | 15.0% |
| !! | TTTAATTGAATCATAATTAG+AGG | + | chr4.4:73845684-73845703 | MS.gene48819:intron | 15.0% |
| !!! | ATTTATTTTGGTTTAGTAAA+AGG | - | chr4.4:73847313-73847332 | None:intergenic | 15.0% |
| !!! | TTATTTTTCCTTAAAAATCA+TGG | + | chr4.4:73848320-73848339 | MS.gene48819:intron | 15.0% |
| !!! | TTTTAAGGAAAAATAACAAA+AGG | - | chr4.4:73848316-73848335 | None:intergenic | 15.0% |
| !! | ATATAATTGAGTGTAATCAT+GGG | + | chr4.4:73845848-73845867 | MS.gene48819:intron | 20.0% |
| !! | ATTATAACAATCAACATAGA+TGG | - | chr4.4:73848495-73848514 | None:intergenic | 20.0% |
| !! | ATTATTGTTTGTATCCTTAT+TGG | + | chr4.4:73846034-73846053 | MS.gene48819:intron | 20.0% |
| !! | TGTGTATAAAATTATTACCT+TGG | - | chr4.4:73848289-73848308 | None:intergenic | 20.0% |
| !! | TTAAGGAAAAATAACAAAAG+GGG | - | chr4.4:73848314-73848333 | None:intergenic | 20.0% |
| !! | TTGTAGTCAAATAAAAAGAT+TGG | + | chr4.4:73847047-73847066 | MS.gene48819:intron | 20.0% |
| !!! | AGTGTAAGCTATTTTATTTA+CGG | + | chr4.4:73847907-73847926 | MS.gene48819:intron | 20.0% |
| !!! | ATCATTTTCTCAAATAACTA+CGG | - | chr4.4:73845830-73845849 | None:intergenic | 20.0% |
| !!! | GTAAATTTTGAAAAATAAGC+AGG | - | chr4.4:73847574-73847593 | None:intergenic | 20.0% |
| !!! | TATAAGTGATTTGAAATTGT+TGG | + | chr4.4:73845741-73845760 | MS.gene48819:intron | 20.0% |
| !!! | TGTACTGTATCAATTTATTT+TGG | - | chr4.4:73847325-73847344 | None:intergenic | 20.0% |
| ! | AAAATTAGCAAGACTATCTT+CGG | - | chr4.4:73848237-73848256 | None:intergenic | 25.0% |
| ! | AATATTTAGATACTCACTGA+AGG | - | chr4.4:73845633-73845652 | None:intergenic | 25.0% |
| ! | AATGACTTCCTAAAATTCAT+TGG | - | chr4.4:73846115-73846134 | None:intergenic | 25.0% |
| ! | AGTTCTGCATAATAAACATA+CGG | - | chr4.4:73847164-73847183 | None:intergenic | 25.0% |
| ! | ATATTTAGATACTCACTGAA+GGG | - | chr4.4:73845632-73845651 | None:intergenic | 25.0% |
| ! | ATGACTTCCTAAAATTCATT+GGG | - | chr4.4:73846114-73846133 | None:intergenic | 25.0% |
| ! | GATATAATTGAGTGTAATCA+TGG | + | chr4.4:73845847-73845866 | MS.gene48819:intron | 25.0% |
| ! | GTAAAAGGAACATTACATTA+CGG | - | chr4.4:73847298-73847317 | None:intergenic | 25.0% |
| ! | GTTATTCCAAATCAATATTC+TGG | + | chr4.4:73846830-73846849 | MS.gene48819:intron | 25.0% |
| ! | TATTGTTTCAACAGTCAATT+TGG | + | chr4.4:73846514-73846533 | MS.gene48819:CDS | 25.0% |
| ! | TCAGTGAAGATAATCTTAAA+GGG | - | chr4.4:73847692-73847711 | None:intergenic | 25.0% |
| ! | TTCAGTGAAGATAATCTTAA+AGG | - | chr4.4:73847693-73847712 | None:intergenic | 25.0% |
| !! | AAATTTCCCTTTTTACTTGA+AGG | - | chr4.4:73846190-73846209 | None:intergenic | 25.0% |
| !! | ACGAGCTTAGTTTAAATTTT+CGG | - | chr4.4:73848008-73848027 | None:intergenic | 25.0% |
| !! | GAAAGTGAAAATTAACTTGA+TGG | + | chr4.4:73846701-73846720 | MS.gene48819:intron | 25.0% |
| !! | TAATGCTGTTCTAATTTTAC+TGG | + | chr4.4:73847376-73847395 | MS.gene48819:intron | 25.0% |
| !! | TATACTGAACTTGCTTATAT+GGG | + | chr4.4:73848159-73848178 | MS.gene48819:intron | 25.0% |
| !! | TGCAATTTTCTTGTACTATT+AGG | + | chr4.4:73848360-73848379 | MS.gene48819:intron | 25.0% |
| !! | TTATACTGAACTTGCTTATA+TGG | + | chr4.4:73848158-73848177 | MS.gene48819:intron | 25.0% |
| AAGGAATCAACTACTAATCA+AGG | - | chr4.4:73847781-73847800 | None:intergenic | 30.0% | |
| AATTGATACAGTACATGTGA+AGG | + | chr4.4:73847330-73847349 | MS.gene48819:intron | 30.0% | |
| AGGAAAAATCAACAATGGTA+TGG | + | chr4.4:73848439-73848458 | MS.gene48819:intron | 30.0% | |
| AGGTATCCTTCAAGTAAAAA+GGG | + | chr4.4:73846181-73846200 | MS.gene48819:intron | 30.0% | |
| AGTTCAGGAAAAATCAACAA+TGG | + | chr4.4:73848434-73848453 | MS.gene48819:CDS | 30.0% | |
| ATGAGCTGTAATATAGATGT+TGG | + | chr4.4:73846078-73846097 | MS.gene48819:intron | 30.0% | |
| ATGCTATTAATGTCTCTCTA+CGG | + | chr4.4:73847494-73847513 | MS.gene48819:intron | 30.0% | |
| ATTCATCCTAATCAACTTTG+AGG | - | chr4.4:73847524-73847543 | None:intergenic | 30.0% | |
| CAAAAGATTAAACTTGCCTT+GGG | - | chr4.4:73846596-73846615 | None:intergenic | 30.0% | |
| CAGAAAAAGAATTGTTCTTG+CGG | + | chr4.4:73848567-73848586 | MS.gene48819:intron | 30.0% | |
| CTGTATATAAACCAAGACAA+AGG | + | chr4.4:73848604-73848623 | MS.gene48819:intron | 30.0% | |
| GACTGTTGAAACAATATTTC+TGG | - | chr4.4:73846510-73846529 | None:intergenic | 30.0% | |
| GCATAAATACTCTGTTTGAA+TGG | + | chr4.4:73846146-73846165 | MS.gene48819:intron | 30.0% | |
| TCAAAAGATTAAACTTGCCT+TGG | - | chr4.4:73846597-73846616 | None:intergenic | 30.0% | |
| TTCAAGATTCAGAACATTGT+TGG | + | chr4.4:73847820-73847839 | MS.gene48819:CDS | 30.0% | |
| TTGAATGGAATGTGATAGAA+AGG | + | chr4.4:73846161-73846180 | MS.gene48819:intron | 30.0% | |
| TTGTGTTAGAATGTAGATGA+TGG | + | chr4.4:73848048-73848067 | MS.gene48819:intron | 30.0% | |
| TTTCTATTACATTGCATCGA+TGG | + | chr4.4:73845949-73845968 | MS.gene48819:intron | 30.0% | |
| ! | AAATTTTAAACTCCCAACCA+TGG | - | chr4.4:73847254-73847273 | None:intergenic | 30.0% |
| ! | AAGGTATCCTTCAAGTAAAA+AGG | + | chr4.4:73846180-73846199 | MS.gene48819:intron | 30.0% |
| ! | CAAAGATTTTTGACGTTATC+TGG | + | chr4.4:73846217-73846236 | MS.gene48819:intron | 30.0% |
| ! | CTAATTTTACTGGTATGACT+AGG | + | chr4.4:73847386-73847405 | MS.gene48819:intron | 30.0% |
| ! | CTGATTTCCCAATGAATTTT+AGG | + | chr4.4:73846104-73846123 | MS.gene48819:intron | 30.0% |
| ! | GTATTGCCAGAATATTGATT+TGG | - | chr4.4:73846839-73846858 | None:intergenic | 30.0% |
| ! | TGATTAGTAGTTGATTCCTT+TGG | + | chr4.4:73847781-73847800 | MS.gene48819:intron | 30.0% |
| ! | TTGATTTGATTCACTCTGTA+TGG | + | chr4.4:73847228-73847247 | MS.gene48819:intron | 30.0% |
| ! | TTTTGATGTTGTTATGTGAC+AGG | + | chr4.4:73848689-73848708 | MS.gene48819:intron | 30.0% |
| !! | GTCTTGCTAATTTTTGTTTC+TGG | + | chr4.4:73848243-73848262 | MS.gene48819:CDS | 30.0% |
| !! | TAGAATGTAGATGATGGAAA+GGG | + | chr4.4:73848054-73848073 | MS.gene48819:intron | 30.0% |
| !! | TTAGAATGTAGATGATGGAA+AGG | + | chr4.4:73848053-73848072 | MS.gene48819:intron | 30.0% |
| !!! | TTGATTCTCTTTTAGAATCC+TGG | + | chr4.4:73847105-73847124 | MS.gene48819:intron | 30.0% |
| AAAAAGTTTAGCCTCAATCC+AGG | - | chr4.4:73845914-73845933 | None:intergenic | 35.0% | |
| AACATTACATTACGGACATG+AGG | - | chr4.4:73847290-73847309 | None:intergenic | 35.0% | |
| ACTAACACATACATGGACAT+CGG | + | chr4.4:73845776-73845795 | MS.gene48819:intron | 35.0% | |
| ACTTCCAAAGCAATGGAAAA+AGG | - | chr4.4:73846681-73846700 | None:intergenic | 35.0% | |
| AGCAATGGAAAAAGGAAACA+CGG | - | chr4.4:73846673-73846692 | None:intergenic | 35.0% | |
| AGTCAATTTGGACACTAAGT+TGG | + | chr4.4:73846526-73846545 | MS.gene48819:CDS | 35.0% | |
| ATCTATATTACAGCTCATCC+CGG | - | chr4.4:73846076-73846095 | None:intergenic | 35.0% | |
| ATTGATATGTTCTCTGCTTC+TGG | + | chr4.4:73848666-73848685 | MS.gene48819:intron | 35.0% | |
| CTATCTTCGGTTTCTTCATA+CGG | - | chr4.4:73848224-73848243 | None:intergenic | 35.0% | |
| CTCAATTGCTAACAAGACAA+AGG | + | chr4.4:73848633-73848652 | MS.gene48819:intron | 35.0% | |
| GATTTGTATGGGGATAAGTA+TGG | + | chr4.4:73847962-73847981 | MS.gene48819:intron | 35.0% | |
| TAACGTCAGTAACTCAATAG+TGG | - | chr4.4:73848530-73848549 | None:intergenic | 35.0% | |
| TCTGGAAAGATTGTTCTAAC+AGG | + | chr4.4:73848261-73848280 | MS.gene48819:CDS | 35.0% | |
| TGATTGTGATTGTGATGTGA+TGG | + | chr4.4:73846301-73846320 | MS.gene48819:intron | 35.0% | |
| TGCATAGACACAACCAAATA+TGG | - | chr4.4:73848080-73848099 | None:intergenic | 35.0% | |
| TTCACTTTCACTTCCAAAGT+GGG | - | chr4.4:73846737-73846756 | None:intergenic | 35.0% | |
| TTGAGATATCTCCTTTGTCT+TGG | - | chr4.4:73848618-73848637 | None:intergenic | 35.0% | |
| TTTCACTTTCACTTCCAAAG+TGG | - | chr4.4:73846691-73846710 | None:intergenic | 35.0% | |
| TTTCTCAAATAACTACGGTG+TGG | - | chr4.4:73845825-73845844 | None:intergenic | 35.0% | |
| ! | ATCGCTTGATGTGATTTGTA+TGG | + | chr4.4:73847950-73847969 | MS.gene48819:intron | 35.0% |
| ! | ATGAAGCACTAACACATACA+TGG | + | chr4.4:73845769-73845788 | MS.gene48819:intron | 35.0% |
| ! | CGTGTGAACCATGATTTTTA+AGG | - | chr4.4:73848331-73848350 | None:intergenic | 35.0% |
| ! | CGTTATCTGGAACTAAACAA+AGG | + | chr4.4:73846230-73846249 | MS.gene48819:intron | 35.0% |
| ! | CTATGCCATTTGTGTTGTAT+TGG | + | chr4.4:73847546-73847565 | MS.gene48819:intron | 35.0% |
| ! | GTTTCCTTTTTCCATTGCTT+TGG | + | chr4.4:73846674-73846693 | MS.gene48819:intron | 35.0% |
| ! | TACATTGCATCGATGGTAAT+TGG | + | chr4.4:73845956-73845975 | MS.gene48819:intron | 35.0% |
| ! | TCGCTTGATGTGATTTGTAT+GGG | + | chr4.4:73847951-73847970 | MS.gene48819:intron | 35.0% |
| !! | AAGATGAGTGCAGTTGTTTT+TGG | - | chr4.4:73846948-73846967 | None:intergenic | 35.0% |
| !! | GAAAAGCACTTATATGACAG+AGG | - | chr4.4:73847012-73847031 | None:intergenic | 35.0% |
| !!! | TTCTCTTTTAGAATCCTGGT+AGG | + | chr4.4:73847109-73847128 | MS.gene48819:intron | 35.0% |
| AAAAGCTTGGCTTCAATGCT+AGG | + | chr4.4:73847648-73847667 | MS.gene48819:CDS | 40.0% | |
| AACAGTCTAAATTGGCAGCA+AGG | + | chr4.4:73847433-73847452 | MS.gene48819:CDS | 40.0% | |
| AAGCACTTATATGACAGAGG+TGG | - | chr4.4:73847009-73847028 | None:intergenic | 40.0% | |
| ACATGACATTGACACTGACA+CGG | + | chr4.4:73845799-73845818 | MS.gene48819:intron | 40.0% | |
| AGCAACTAACACAGATGACA+CGG | - | chr4.4:73845877-73845896 | None:intergenic | 40.0% | |
| AGGAAAGACAAGCACCAATA+AGG | - | chr4.4:73846051-73846070 | None:intergenic | 40.0% | |
| AGGCTCCAATACAACACAAA+TGG | - | chr4.4:73847554-73847573 | None:intergenic | 40.0% | |
| ATCCTGAAGCATAAAGCCAA+AGG | - | chr4.4:73847800-73847819 | None:intergenic | 40.0% | |
| ATCTAGCGAAACATCCTTCT+GGG | + | chr4.4:73845596-73845615 | MS.gene48819:CDS | 40.0% | |
| CACAGGGTATATTTGCTCAA+AGG | - | chr4.4:73848407-73848426 | None:intergenic | 40.0% | |
| CACTTTCACTTCCAAAGCAA+TGG | - | chr4.4:73846688-73846707 | None:intergenic | 40.0% | |
| CATCTTTGCTTCTGGCAAAA+TGG | + | chr4.4:73846962-73846981 | MS.gene48819:CDS | 40.0% | |
| CTATTAATGTCTCTCTACGG+AGG | + | chr4.4:73847497-73847516 | MS.gene48819:intron | 40.0% | |
| CTTCATACGGTAGATTAACC+CGG | - | chr4.4:73848211-73848230 | None:intergenic | 40.0% | |
| CTTGTACTATTAGGTGAGAG+AGG | + | chr4.4:73848369-73848388 | MS.gene48819:intron | 40.0% | |
| GAGTGAGCAACAGTCTAAAT+TGG | + | chr4.4:73847425-73847444 | MS.gene48819:CDS | 40.0% | |
| GCAATGGAAAAAGGAAACAC+GGG | - | chr4.4:73846672-73846691 | None:intergenic | 40.0% | |
| GTGATGTCAAGTTCCCAATA+CGG | + | chr4.4:73847848-73847867 | MS.gene48819:CDS | 40.0% | |
| TAATGCAGAGTACAATCCCA+AGG | + | chr4.4:73846577-73846596 | MS.gene48819:CDS | 40.0% | |
| TCATCTGTGTTAGTTGCTGA+TGG | + | chr4.4:73845879-73845898 | MS.gene48819:intron | 40.0% | |
| TGGCTTCAATGCTAGGTTTA+AGG | + | chr4.4:73847655-73847674 | MS.gene48819:CDS | 40.0% | |
| TTAGATACTCACTGAAGGGT+AGG | - | chr4.4:73845628-73845647 | None:intergenic | 40.0% | |
| TTCATACGGTAGATTAACCC+GGG | - | chr4.4:73848210-73848229 | None:intergenic | 40.0% | |
| ! | AGCCAAGCTTTTGGATGATA+CGG | - | chr4.4:73847640-73847659 | None:intergenic | 40.0% |
| ! | ATGATGGAAAGGGCCATATT+TGG | + | chr4.4:73848064-73848083 | MS.gene48819:intron | 40.0% |
| ! | CGCTTGATGTGATTTGTATG+GGG | + | chr4.4:73847952-73847971 | MS.gene48819:intron | 40.0% |
| ! | CTGAACTTGCTTATATGGGA+TGG | + | chr4.4:73848163-73848182 | MS.gene48819:intron | 40.0% |
| !! | TAGCATTGAAGCCAAGCTTT+TGG | - | chr4.4:73847649-73847668 | None:intergenic | 40.0% |
| !! | TTCCTTTGGCTTTATGCTTC+AGG | + | chr4.4:73847795-73847814 | MS.gene48819:intron | 40.0% |
| !!! | TCTTTTAGAATCCTGGTAGG+AGG | + | chr4.4:73847112-73847131 | MS.gene48819:intron | 40.0% |
| AAGTTCCCAATACGGTTGGA+GGG | + | chr4.4:73847856-73847875 | MS.gene48819:CDS | 45.0% | |
| ACTGCACTCATCTTTGCTTC+TGG | + | chr4.4:73846954-73846973 | MS.gene48819:CDS | 45.0% | |
| AGGGTCTTGCATATTCCCAT+GGG | + | chr4.4:73847875-73847894 | MS.gene48819:CDS | 45.0% | |
| ATGGCTGATCAAGGATTGGA+AGG | + | chr4.4:73845559-73845578 | MS.gene48819:CDS | 45.0% | |
| CTGTGTTAGTTGCTGATGGA+TGG | + | chr4.4:73845883-73845902 | MS.gene48819:intron | 45.0% | |
| GATCTAGCGAAACATCCTTC+TGG | + | chr4.4:73845595-73845614 | MS.gene48819:CDS | 45.0% | |
| GATTGTTCTAACAGGAGCCA+AGG | + | chr4.4:73848269-73848288 | MS.gene48819:CDS | 45.0% | |
| GTCTAAATTGGCAGCAAGGA+AGG | + | chr4.4:73847437-73847456 | MS.gene48819:CDS | 45.0% | |
| GTTTCGCTGCTGTCATTATG+AGG | + | chr4.4:73846913-73846932 | MS.gene48819:CDS | 45.0% | |
| TACACTAGAGAAAGCCCCAT+GGG | - | chr4.4:73847893-73847912 | None:intergenic | 45.0% | |
| TACCATAATAGCCTCTCCCA+CGG | - | chr4.4:73846015-73846034 | None:intergenic | 45.0% | |
| TCCTGAACTCAGTAAGCACA+GGG | - | chr4.4:73848423-73848442 | None:intergenic | 45.0% | |
| TGATTCACTCTGTATGGCCA+TGG | + | chr4.4:73847234-73847253 | MS.gene48819:intron | 45.0% | |
| TGGCTGATCAAGGATTGGAA+GGG | + | chr4.4:73845560-73845579 | MS.gene48819:CDS | 45.0% | |
| TGGTATGACTAGGTTTGCAC+TGG | + | chr4.4:73847396-73847415 | MS.gene48819:intron | 45.0% | |
| TGGTTGTACTGTTCCCACTT+TGG | + | chr4.4:73846721-73846740 | MS.gene48819:intron | 45.0% | |
| TGTACTCTGCATTACGAGCT+TGG | - | chr4.4:73846571-73846590 | None:intergenic | 45.0% | |
| TGTCAAGTTCCCAATACGGT+TGG | + | chr4.4:73847852-73847871 | MS.gene48819:CDS | 45.0% | |
| TTACACTAGAGAAAGCCCCA+TGG | - | chr4.4:73847894-73847913 | None:intergenic | 45.0% | |
| TTAGAATCCTGGTAGGAGGA+GGG | + | chr4.4:73847116-73847135 | MS.gene48819:intron | 45.0% | |
| TTCCTGAACTCAGTAAGCAC+AGG | - | chr4.4:73848424-73848443 | None:intergenic | 45.0% | |
| ! | GCCAAGCTTTTGGATGATAC+GGG | - | chr4.4:73847639-73847658 | None:intergenic | 45.0% |
| ! | GGAGGACCTCAAAGTTGATT+AGG | + | chr4.4:73847515-73847534 | MS.gene48819:intron | 45.0% |
| ! | GGATGGATTTACCTGGATTG+AGG | + | chr4.4:73845900-73845919 | MS.gene48819:intron | 45.0% |
| ! | TATGAACCTGAGCTGTTTCC+CGG | + | chr4.4:73848189-73848208 | MS.gene48819:CDS | 45.0% |
| ! | TGCTGATGGATGGATTTACC+TGG | + | chr4.4:73845893-73845912 | MS.gene48819:intron | 45.0% |
| ! | TTTAGAATCCTGGTAGGAGG+AGG | + | chr4.4:73847115-73847134 | MS.gene48819:intron | 45.0% |
| !! | GGCTACTTGGCTTTATGCTT+TGG | - | chr4.4:73845994-73846013 | None:intergenic | 45.0% |
| ACCCTGTGCTTACTGAGTTC+AGG | + | chr4.4:73848419-73848438 | MS.gene48819:CDS | 50.0% | |
| AGCATAAAGCCAAGTAGCCG+TGG | + | chr4.4:73845995-73846014 | MS.gene48819:intron | 50.0% | |
| ATTAACCCGGGAAACAGCTC+AGG | - | chr4.4:73848198-73848217 | None:intergenic | 50.0% | |
| CAAGACCCTCCAACCGTATT+GGG | - | chr4.4:73847864-73847883 | None:intergenic | 50.0% | |
| CAAGTTCCCAATACGGTTGG+AGG | + | chr4.4:73847855-73847874 | MS.gene48819:CDS | 50.0% | |
| CACTCTGTATGGCCATGGTT+GGG | + | chr4.4:73847239-73847258 | MS.gene48819:intron | 50.0% | |
| GAGGGTCTTGCATATTCCCA+TGG | + | chr4.4:73847874-73847893 | MS.gene48819:CDS | 50.0% | |
| GCATAAAGCCAAGTAGCCGT+GGG | + | chr4.4:73845996-73846015 | MS.gene48819:intron | 50.0% | |
| GCCCGTATCATCCAAAAGCT+TGG | + | chr4.4:73847635-73847654 | MS.gene48819:CDS | 50.0% | |
| GGAAAAAGGAAACACGGGCA+AGG | - | chr4.4:73846667-73846686 | None:intergenic | 50.0% | |
| GGATGTTTCGCTAGATCCAC+AGG | - | chr4.4:73845592-73845611 | None:intergenic | 50.0% | |
| GGGTCTTGCATATTCCCATG+GGG | + | chr4.4:73847876-73847895 | MS.gene48819:CDS | 50.0% | |
| GTTTCGCTAGATCCACAGGT+TGG | - | chr4.4:73845588-73845607 | None:intergenic | 50.0% | |
| TATTACAGCTCATCCCGGAC+AGG | - | chr4.4:73846071-73846090 | None:intergenic | 50.0% | |
| TCACTCTGTATGGCCATGGT+TGG | + | chr4.4:73847238-73847257 | MS.gene48819:intron | 50.0% | |
| TGGTGCTTGTCTTTCCTGTC+CGG | + | chr4.4:73846054-73846073 | MS.gene48819:intron | 50.0% | |
| ! | ATGAACCTGAGCTGTTTCCC+GGG | + | chr4.4:73848190-73848209 | MS.gene48819:CDS | 50.0% |
| AGCCGTGGGAGAGGCTATTA+TGG | + | chr4.4:73846010-73846029 | MS.gene48819:intron | 55.0% | |
| AGGGTAGGCACAATCCCAGA+AGG | - | chr4.4:73845613-73845632 | None:intergenic | 55.0% | |
| ATTGGAAGGGAGCCAACCTG+TGG | + | chr4.4:73845573-73845592 | MS.gene48819:CDS | 55.0% | |
| CTAATGACCCTCCTCCTACC+AGG | - | chr4.4:73847126-73847145 | None:intergenic | 55.0% | |
| GCAAGACCCTCCAACCGTAT+TGG | - | chr4.4:73847865-73847884 | None:intergenic | 55.0% | |
| GGTGCTTGTCTTTCCTGTCC+GGG | + | chr4.4:73846055-73846074 | MS.gene48819:intron | 55.0% | |
| AAGCCAAGTAGCCGTGGGAG+AGG | + | chr4.4:73846001-73846020 | MS.gene48819:intron | 60.0% | |
| TAGCCTCTCCCACGGCTACT+TGG | - | chr4.4:73846007-73846026 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 73845559 | 73848726 | 73845559 | ID=MS.gene48819 |
| chr4.4 | mRNA | 73845559 | 73848726 | 73845559 | ID=MS.gene48819.t1;Parent=MS.gene48819 |
| chr4.4 | exon | 73845559 | 73845635 | 73845559 | ID=MS.gene48819.t1.exon1;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73845559 | 73845635 | 73845559 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73846511 | 73846598 | 73846511 | ID=MS.gene48819.t1.exon2;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73846511 | 73846598 | 73846511 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73846912 | 73846983 | 73846912 | ID=MS.gene48819.t1.exon3;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73846912 | 73846983 | 73846912 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73847408 | 73847458 | 73847408 | ID=MS.gene48819.t1.exon4;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73847408 | 73847458 | 73847408 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73847632 | 73847676 | 73847632 | ID=MS.gene48819.t1.exon5;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73847632 | 73847676 | 73847632 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73847817 | 73847909 | 73847817 | ID=MS.gene48819.t1.exon6;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73847817 | 73847909 | 73847817 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73848189 | 73848290 | 73848189 | ID=MS.gene48819.t1.exon7;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73848189 | 73848290 | 73848189 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73848382 | 73848455 | 73848382 | ID=MS.gene48819.t1.exon8;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73848382 | 73848455 | 73848382 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| chr4.4 | exon | 73848711 | 73848726 | 73848711 | ID=MS.gene48819.t1.exon9;Parent=MS.gene48819.t1 |
| chr4.4 | CDS | 73848711 | 73848726 | 73848711 | ID=cds.MS.gene48819.t1;Parent=MS.gene48819.t1 |
| Gene Sequence |
| Protein sequence |
