Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77045.t1 | KEH29211.1 | 99.5 | 200 | 1 | 0 | 1 | 200 | 1 | 200 | 9.90E-105 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77045.t1 | P26357 | 95.0 | 200 | 10 | 0 | 1 | 200 | 1 | 200 | 1.0e-102 | 374.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77045.t1 | A0A072UID4 | 99.5 | 200 | 1 | 0 | 1 | 200 | 1 | 200 | 7.1e-105 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77045.t1 | MTR_4g029010 | 99.500 | 200 | 1 | 0 | 1 | 200 | 1 | 200 | 6.42e-148 | 409 |
| MS.gene77045.t1 | MTR_7g072580 | 94.500 | 200 | 11 | 0 | 1 | 200 | 1 | 200 | 5.21e-140 | 389 |
| MS.gene77045.t1 | MTR_7g072580 | 94.500 | 200 | 11 | 0 | 1 | 200 | 1 | 200 | 2.93e-139 | 389 |
| MS.gene77045.t1 | MTR_4g029010 | 98.621 | 145 | 1 | 1 | 1 | 145 | 1 | 144 | 2.22e-102 | 291 |
| MS.gene77045.t1 | MTR_4g029010 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 3.57e-102 | 292 |
| MS.gene77045.t1 | MTR_7g072580 | 95.070 | 142 | 7 | 0 | 1 | 142 | 1 | 142 | 6.49e-97 | 278 |
| MS.gene77045.t1 | MTR_3g065900 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 1.32e-95 | 277 |
| MS.gene77045.t1 | MTR_3g066070 | 69.714 | 175 | 53 | 0 | 26 | 200 | 59 | 233 | 1.54e-81 | 242 |
| MS.gene77045.t1 | MTR_3g065900 | 62.000 | 200 | 59 | 1 | 1 | 200 | 15 | 197 | 9.62e-81 | 239 |
| MS.gene77045.t1 | MTR_3g066070 | 68.571 | 175 | 52 | 1 | 26 | 200 | 59 | 230 | 2.12e-78 | 234 |
| MS.gene77045.t1 | MTR_3g066070 | 68.571 | 175 | 52 | 1 | 26 | 200 | 59 | 230 | 2.12e-78 | 234 |
| MS.gene77045.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 10 | 167 | 6.81e-67 | 202 |
| MS.gene77045.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 9.00e-67 | 204 |
| MS.gene77045.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 9.00e-67 | 204 |
| MS.gene77045.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 9.37e-67 | 204 |
| MS.gene77045.t1 | MTR_3g066070 | 58.993 | 139 | 40 | 1 | 62 | 200 | 1 | 122 | 1.43e-47 | 152 |
| MS.gene77045.t1 | MTR_4g122610 | 54.348 | 138 | 35 | 5 | 1 | 111 | 1 | 137 | 1.71e-37 | 127 |
| MS.gene77045.t1 | MTR_3g066070 | 58.120 | 117 | 32 | 1 | 26 | 142 | 59 | 158 | 3.20e-37 | 127 |
| MS.gene77045.t1 | MTR_4g122635 | 48.571 | 140 | 46 | 5 | 6 | 142 | 1 | 117 | 1.91e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77045.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 4.08e-135 | 377 |
| MS.gene77045.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 4.08e-135 | 377 |
| MS.gene77045.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 4.08e-135 | 377 |
| MS.gene77045.t1 | AT3G13445 | 90.500 | 200 | 19 | 0 | 1 | 200 | 1 | 200 | 9.61e-134 | 373 |
| MS.gene77045.t1 | AT1G55520 | 93.785 | 177 | 11 | 0 | 1 | 177 | 1 | 177 | 6.60e-121 | 340 |
| MS.gene77045.t1 | AT3G13445 | 89.730 | 185 | 19 | 0 | 1 | 185 | 1 | 185 | 8.42e-121 | 340 |
Find 51 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTCAATGCTAGGTTTA+AGG | 0.179203 | 4.3:+70654569 | MS.gene77045:CDS |
| TATTGTTTCAACAGTCAATT+TGG | 0.195167 | 4.3:+70653390 | MS.gene77045:CDS |
| CATCTTTGCTTCTGGCAAAA+TGG | 0.262684 | 4.3:+70653866 | MS.gene77045:CDS |
| TATGAACCTGAGCTGTTTCC+CGG | 0.266557 | 4.3:+70655083 | MS.gene77045:CDS |
| TAGCATTGAAACCAAGCTTT+TGG | 0.303301 | 4.3:-70654560 | None:intergenic |
| GATCTAGCGAAACATCCTTC+TGG | 0.344452 | 4.3:+70652387 | MS.gene77045:CDS |
| ACTGCACTCATCTTTGCTTC+TGG | 0.346245 | 4.3:+70653858 | MS.gene77045:CDS |
| ACCCTGTGCTCACCGAGTTC+AGG | 0.348636 | 4.3:+70655313 | MS.gene77045:CDS |
| GAGTGAGCAACAGTCTAAAT+TGG | 0.370609 | 4.3:+70654337 | MS.gene77045:CDS |
| CAAGACCCTCCAGCCGTATT+GGG | 0.375374 | 4.3:-70654770 | None:intergenic |
| TCTGGAAAGATTGTTCTAAC+AGG | 0.377671 | 4.3:+70655155 | MS.gene77045:CDS |
| AAAATTAGCAAGACTATCTT+CGG | 0.380946 | 4.3:-70655128 | None:intergenic |
| GCAAGACCCTCCAGCCGTAT+TGG | 0.389877 | 4.3:-70654771 | None:intergenic |
| TTCAAGATTCAGAACATTGT+TGG | 0.416837 | 4.3:+70654729 | MS.gene77045:CDS |
| TATACTCTGCATTACGAGCT+TGG | 0.419027 | 4.3:-70653444 | None:intergenic |
| AAAAGCTTGGTTTCAATGCT+AGG | 0.425174 | 4.3:+70654562 | MS.gene77045:CDS |
| ATCTAGCGAAACATCCTTCT+GGG | 0.437658 | 4.3:+70652388 | MS.gene77045:CDS |
| TTCCTGAACTCGGTGAGCAC+AGG | 0.462497 | 4.3:-70655315 | None:intergenic |
| GAGGGTCTTGCATATTCCCA+TGG | 0.464117 | 4.3:+70654783 | MS.gene77045:CDS |
| TGGTATGACTAGGTTTGTAC+TGG | 0.465663 | 4.3:+70654308 | MS.gene77045:intron |
| AGTCAATTTGGACACTAAGT+TGG | 0.477037 | 4.3:+70653402 | MS.gene77045:CDS |
| GTCTAAATTGGCAGCAAGGA+AGG | 0.482016 | 4.3:+70654349 | MS.gene77045:CDS |
| CTATCTTCGGTTTCTTCATA+CGG | 0.487647 | 4.3:-70655115 | None:intergenic |
| ATTAACCCGGGAAACAGCTC+AGG | 0.491192 | 4.3:-70655089 | None:intergenic |
| AGGGTCTTGCATATTCCCAT+GGG | 0.492484 | 4.3:+70654784 | MS.gene77045:CDS |
| CTTCATACGGTAGATTAACC+CGG | 0.497293 | 4.3:-70655102 | None:intergenic |
| GGATGTTTCGCTAGATCCAC+AGG | 0.507959 | 4.3:-70652381 | None:intergenic |
| TTAAGGTTGATGGCTGATCA+AGG | 0.508347 | 4.3:+70652342 | None:intergenic |
| GCCCGTATCATCCAAAAGCT+TGG | 0.514743 | 4.3:+70654549 | MS.gene77045:CDS |
| TTTGTATTATCAGGTGAGAG+AGG | 0.516176 | 4.3:+70655263 | MS.gene77045:intron |
| TGTCAAGTTCCCAATACGGC+TGG | 0.543868 | 4.3:+70654761 | MS.gene77045:CDS |
| GTGATGTCAAGTTCCCAATA+CGG | 0.550624 | 4.3:+70654757 | MS.gene77045:CDS |
| TCCTGAACTCGGTGAGCACA+GGG | 0.554650 | 4.3:-70655314 | None:intergenic |
| GTTGATGGCTGATCAAGGAT+TGG | 0.555740 | 4.3:+70652347 | None:intergenic |
| CAAGTTCCCAATACGGCTGG+AGG | 0.557463 | 4.3:+70654764 | MS.gene77045:CDS |
| ATGGCTGATCAAGGATTGGA+AGG | 0.558814 | 4.3:+70652351 | MS.gene77045:CDS |
| ATGAACCTGAGCTGTTTCCC+GGG | 0.563246 | 4.3:+70655084 | MS.gene77045:CDS |
| AACAGTCTAAATTGGCAGCA+AGG | 0.569501 | 4.3:+70654345 | MS.gene77045:CDS |
| GATTGTTCTAACAGGAGCCA+AGG | 0.576547 | 4.3:+70655163 | MS.gene77045:CDS |
| TTAGATACTCACTGAAGGGT+AGG | 0.578649 | 4.3:-70652417 | None:intergenic |
| CACAGGGTATATTTGCTCAA+AGG | 0.582103 | 4.3:-70655298 | None:intergenic |
| TACACTAGAGAAAGCCCCAT+GGG | 0.590023 | 4.3:-70654799 | None:intergenic |
| TTCATACGGTAGATTAACCC+GGG | 0.608069 | 4.3:-70655101 | None:intergenic |
| GTTTCGCTAGATCCACAGGT+TGG | 0.617374 | 4.3:-70652377 | None:intergenic |
| AAGTTCCCAATACGGCTGGA+GGG | 0.628374 | 4.3:+70654765 | MS.gene77045:CDS |
| AGGGTAGGCACGATCCCAGA+AGG | 0.629550 | 4.3:-70652402 | None:intergenic |
| ATTGGAAGGGAGCCAACCTG+TGG | 0.653530 | 4.3:+70652365 | MS.gene77045:CDS |
| TAATGCAGAGTATAATCCCA+AGG | 0.657375 | 4.3:+70653453 | MS.gene77045:CDS |
| GGGTCTTGCATATTCCCATG+GGG | 0.664391 | 4.3:+70654785 | MS.gene77045:CDS |
| TGGCTGATCAAGGATTGGAA+GGG | 0.672278 | 4.3:+70652352 | MS.gene77045:CDS |
| TTACACTAGAGAAAGCCCCA+TGG | 0.679761 | 4.3:-70654800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCATAATAATTATTACAT+TGG | - | chr4.3:70653262-70653281 | None:intergenic | 15.0% |
| !! | TGTATATAAAATTATTACCT+TGG | - | chr4.3:70655183-70655202 | None:intergenic | 15.0% |
| !! | TTATTATTTACTTTGAATTC+TGG | + | chr4.3:70653286-70653305 | MS.gene77045:intron | 15.0% |
| !!! | ATTTATTTTGGTTTAGTAAA+TGG | - | chr4.3:70654219-70654238 | None:intergenic | 15.0% |
| !!! | TATACATTTTTTGTATTATC+AGG | + | chr4.3:70655254-70655273 | MS.gene77045:intron | 15.0% |
| !! | CACAAAAAAATTTCAAAAAG+TGG | - | chr4.3:70653614-70653633 | None:intergenic | 20.0% |
| !! | TAATATTCTCAAATAACTAC+CGG | - | chr4.3:70652605-70652624 | None:intergenic | 20.0% |
| !! | TAGTTTAATTGAATCATAAG+TGG | + | chr4.3:70652473-70652492 | MS.gene77045:intron | 20.0% |
| !! | TATAACGTCAAAAATATTTG+AGG | - | chr4.3:70653044-70653063 | None:intergenic | 20.0% |
| !! | TTGTAGTCAAATAAAAAGAT+TGG | + | chr4.3:70653951-70653970 | MS.gene77045:intron | 20.0% |
| !!! | AATTTTTTTGTGTTTCTTTC+TGG | + | chr4.3:70653622-70653641 | MS.gene77045:intron | 20.0% |
| !!! | CAAATATTTTTGACGTTATA+TGG | + | chr4.3:70653044-70653063 | MS.gene77045:intron | 20.0% |
| !!! | GTAAATTTTGAAAAATAAGC+AGG | - | chr4.3:70654488-70654507 | None:intergenic | 20.0% |
| !!! | TAGAAGTGATTTAAAATTGT+TGG | + | chr4.3:70652522-70652541 | MS.gene77045:intron | 20.0% |
| !!! | TGTACTGTATCAATTTATTT+TGG | - | chr4.3:70654231-70654250 | None:intergenic | 20.0% |
| !!! | TTTAAAATTGTTGGTATCTA+TGG | + | chr4.3:70652531-70652550 | MS.gene77045:intron | 20.0% |
| ! | AAAATTAGCAAGACTATCTT+CGG | - | chr4.3:70655131-70655150 | None:intergenic | 25.0% |
| ! | AAGAAAATGAAAATCGATGA+TGG | + | chr4.3:70652700-70652719 | MS.gene77045:intron | 25.0% |
| ! | AAGAAAGCTAAGCATAAATA+AGG | - | chr4.3:70652866-70652885 | None:intergenic | 25.0% |
| ! | AATATTTAGATACTCACTGA+AGG | - | chr4.3:70652425-70652444 | None:intergenic | 25.0% |
| ! | AATGACTTCCTAAATATCAT+TGG | - | chr4.3:70652930-70652949 | None:intergenic | 25.0% |
| ! | AGTTCTGCATAATAAACATA+CGG | - | chr4.3:70654068-70654087 | None:intergenic | 25.0% |
| ! | ATATTTAGATACTCACTGAA+GGG | - | chr4.3:70652424-70652443 | None:intergenic | 25.0% |
| ! | ATGACTTCCTAAATATCATT+GGG | - | chr4.3:70652929-70652948 | None:intergenic | 25.0% |
| ! | ATGATTTCCCAATGATATTT+AGG | + | chr4.3:70652919-70652938 | MS.gene77045:intron | 25.0% |
| ! | ATTTCAGTGAAGATAATCAA+AGG | - | chr4.3:70654607-70654626 | None:intergenic | 25.0% |
| ! | GTAAATGGAACATTACATTA+CGG | - | chr4.3:70654204-70654223 | None:intergenic | 25.0% |
| ! | TAAATTGATACAGTACATGA+AGG | + | chr4.3:70654234-70654253 | MS.gene77045:intron | 25.0% |
| ! | TAAGTATGGTGAAAAGATTT+AGG | + | chr4.3:70654883-70654902 | MS.gene77045:intron | 25.0% |
| ! | TATATGGAAGTAAACAAAAG+CGG | + | chr4.3:70653060-70653079 | MS.gene77045:intron | 25.0% |
| ! | TATTGTTTCAACAGTCAATT+TGG | + | chr4.3:70653390-70653409 | MS.gene77045:CDS | 25.0% |
| ! | TGCAAACAATAATACCATAA+TGG | - | chr4.3:70652842-70652861 | None:intergenic | 25.0% |
| ! | TTAAATGGAATGTGATAGAA+AGG | + | chr4.3:70652988-70653007 | MS.gene77045:intron | 25.0% |
| ! | TTAATTGAATCATAAGTGGA+GGG | + | chr4.3:70652477-70652496 | MS.gene77045:intron | 25.0% |
| ! | TTGAGGGAAAAATTAACAAA+AGG | - | chr4.3:70655210-70655229 | None:intergenic | 25.0% |
| ! | TTTAATTGAATCATAAGTGG+AGG | + | chr4.3:70652476-70652495 | MS.gene77045:intron | 25.0% |
| ! | TTTCAGTGAAGATAATCAAA+GGG | - | chr4.3:70654606-70654625 | None:intergenic | 25.0% |
| ! | TTTCTATTACATTGCATCAA+TGG | + | chr4.3:70652764-70652783 | MS.gene77045:intron | 25.0% |
| ! | TTTCTTCATGAAAAATCACA+AGG | - | chr4.3:70652686-70652705 | None:intergenic | 25.0% |
| !! | ATATACTGAACTTGCTTATA+TGG | + | chr4.3:70655052-70655071 | MS.gene77045:intron | 25.0% |
| !! | GAAAGTGAAAATTAACTTGA+TGG | + | chr4.3:70653577-70653596 | MS.gene77045:intron | 25.0% |
| !! | GTATTTGCAGAATATTGATT+TGG | - | chr4.3:70653743-70653762 | None:intergenic | 25.0% |
| !! | TAATTTTTCCCTCAAAATCA+TGG | + | chr4.3:70655215-70655234 | MS.gene77045:intron | 25.0% |
| !! | TATACTGAACTTGCTTATAT+GGG | + | chr4.3:70655053-70655072 | MS.gene77045:intron | 25.0% |
| !! | TGATTTGGAATAACAAAAGA+GGG | - | chr4.3:70653728-70653747 | None:intergenic | 25.0% |
| !! | TTATGCTGTTCTAATTTTAC+TGG | + | chr4.3:70654288-70654307 | MS.gene77045:intron | 25.0% |
| !!! | TTGATTTGGAATAACAAAAG+AGG | - | chr4.3:70653729-70653748 | None:intergenic | 25.0% |
| AAGAGCTGTAATATAGTTGT+TGG | + | chr4.3:70652893-70652912 | MS.gene77045:intron | 30.0% | |
| AAGGAATCAACTACTAATCA+AGG | - | chr4.3:70654690-70654709 | None:intergenic | 30.0% | |
| AAGTAACTCTACATGCAATA+TGG | - | chr4.3:70654987-70655006 | None:intergenic | 30.0% | |
| AGCAATGGAAAAAGAAAACA+TGG | - | chr4.3:70653549-70653568 | None:intergenic | 30.0% | |
| AGGTATCATTCAAGCAAAAA+GGG | + | chr4.3:70653008-70653027 | MS.gene77045:intron | 30.0% | |
| ATATGGAAGTAAACAAAAGC+GGG | + | chr4.3:70653061-70653080 | MS.gene77045:intron | 30.0% | |
| ATTCATCCTAATCAACTTTG+AGG | - | chr4.3:70654437-70654456 | None:intergenic | 30.0% | |
| GCAATGGAAAAAGAAAACAT+GGG | - | chr4.3:70653548-70653567 | None:intergenic | 30.0% | |
| TGCTATTAATGTCTCTCTAA+CGG | + | chr4.3:70654407-70654426 | MS.gene77045:intron | 30.0% | |
| TTCAAGATTCAGAACATTGT+TGG | + | chr4.3:70654729-70654748 | MS.gene77045:CDS | 30.0% | |
| TTGTGTTAGAATGTAGATGA+TGG | + | chr4.3:70654955-70654974 | MS.gene77045:intron | 30.0% | |
| ! | AAATTTTAAACTCCCAACCA+TGG | - | chr4.3:70654158-70654177 | None:intergenic | 30.0% |
| ! | AAGGTATCATTCAAGCAAAA+AGG | + | chr4.3:70653007-70653026 | MS.gene77045:intron | 30.0% |
| ! | ATAAACTATGCCATTTGTGT+TGG | + | chr4.3:70654455-70654474 | MS.gene77045:intron | 30.0% |
| ! | CTAATTTTACTGGTATGACT+AGG | + | chr4.3:70654298-70654317 | MS.gene77045:intron | 30.0% |
| ! | GTTTTCTTTTTCCATTGCTT+TGG | + | chr4.3:70653550-70653569 | MS.gene77045:intron | 30.0% |
| ! | TGATTAGTAGTTGATTCCTT+TGG | + | chr4.3:70654690-70654709 | MS.gene77045:intron | 30.0% |
| ! | TTGATTTGATTCACTCTGTA+TGG | + | chr4.3:70654132-70654151 | MS.gene77045:intron | 30.0% |
| !! | GTCTTGCTAATTTTTGTTTC+TGG | + | chr4.3:70655137-70655156 | MS.gene77045:CDS | 30.0% |
| !! | TAGAATGTAGATGATGGAAA+GGG | + | chr4.3:70654961-70654980 | MS.gene77045:intron | 30.0% |
| !! | TTAGAATGTAGATGATGGAA+AGG | + | chr4.3:70654960-70654979 | MS.gene77045:intron | 30.0% |
| !!! | TTGATTCTCTTTTAGAATCC+TGG | + | chr4.3:70654009-70654028 | MS.gene77045:intron | 30.0% |
| AAAAATTTAGCCCTCAATCC+AGG | - | chr4.3:70652731-70652750 | None:intergenic | 35.0% | |
| AAAAGCTTGGTTTCAATGCT+AGG | + | chr4.3:70654562-70654581 | MS.gene77045:CDS | 35.0% | |
| AAATTATTCGACTAAGCACG+CGG | + | chr4.3:70652964-70652983 | MS.gene77045:intron | 35.0% | |
| AACATTACATTACGGACATG+AGG | - | chr4.3:70654196-70654215 | None:intergenic | 35.0% | |
| AACTATATTACAGCTCTTCC+CGG | - | chr4.3:70652891-70652910 | None:intergenic | 35.0% | |
| ACTAACACAAACATGGACAT+CGG | + | chr4.3:70652557-70652576 | MS.gene77045:intron | 35.0% | |
| AGTCAATTTGGACACTAAGT+TGG | + | chr4.3:70653402-70653421 | MS.gene77045:CDS | 35.0% | |
| CAAGAGATTAAACTTGCCTT+GGG | - | chr4.3:70653472-70653491 | None:intergenic | 35.0% | |
| CTATCTTCGGTTTCTTCATA+CGG | - | chr4.3:70655118-70655137 | None:intergenic | 35.0% | |
| GATTTGTATGGGGATAAGTA+TGG | + | chr4.3:70654869-70654888 | MS.gene77045:intron | 35.0% | |
| GTACTACTGTGAAACTGAAA+CGG | - | chr4.3:70654657-70654676 | None:intergenic | 35.0% | |
| TAATGCAGAGTATAATCCCA+AGG | + | chr4.3:70653453-70653472 | MS.gene77045:CDS | 35.0% | |
| TATTAATGTCTCTCTAACGG+AGG | + | chr4.3:70654410-70654429 | MS.gene77045:intron | 35.0% | |
| TCAAGAGATTAAACTTGCCT+TGG | - | chr4.3:70653473-70653492 | None:intergenic | 35.0% | |
| TCTGGAAAGATTGTTCTAAC+AGG | + | chr4.3:70655155-70655174 | MS.gene77045:CDS | 35.0% | |
| TGGTTTCAATGCTAGGTTTA+AGG | + | chr4.3:70654569-70654588 | MS.gene77045:CDS | 35.0% | |
| TTCTGCAAGTAAACAGACAT+TGG | - | chr4.3:70653369-70653388 | None:intergenic | 35.0% | |
| TTTGTATTATCAGGTGAGAG+AGG | + | chr4.3:70655263-70655282 | MS.gene77045:intron | 35.0% | |
| ! | AACCAAGCTTTTGGATGATA+CGG | - | chr4.3:70654554-70654573 | None:intergenic | 35.0% |
| ! | CATTGGTAGTAAACAGACAT+TGG | - | chr4.3:70653245-70653264 | None:intergenic | 35.0% |
| ! | TTATGCTTAGCTTTCTTGTC+CGG | + | chr4.3:70652869-70652888 | MS.gene77045:intron | 35.0% |
| !! | AAATCGATGATGGATTTACC+TGG | + | chr4.3:70652710-70652729 | MS.gene77045:intron | 35.0% |
| !! | AAGATGAGTGCAGTTGTTTT+TGG | - | chr4.3:70653852-70653871 | None:intergenic | 35.0% |
| !! | GAAAAGCACTTATATGACAG+AGG | - | chr4.3:70653916-70653935 | None:intergenic | 35.0% |
| !! | TAGCATTGAAACCAAGCTTT+TGG | - | chr4.3:70654563-70654582 | None:intergenic | 35.0% |
| !!! | TTCTCTTTTAGAATCCTGGT+AGG | + | chr4.3:70654013-70654032 | MS.gene77045:intron | 35.0% |
| !!! | TTGCTGATTTTTCCTGAACT+CGG | - | chr4.3:70655328-70655347 | None:intergenic | 35.0% |
| AACAGTCTAAATTGGCAGCA+AGG | + | chr4.3:70654345-70654364 | MS.gene77045:CDS | 40.0% | |
| AAGCACTTATATGACAGAGG+TGG | - | chr4.3:70653913-70653932 | None:intergenic | 40.0% | |
| ATCCTGAAGCATAAAGCCAA+AGG | - | chr4.3:70654709-70654728 | None:intergenic | 40.0% | |
| ATCTAGCGAAACATCCTTCT+GGG | + | chr4.3:70652388-70652407 | MS.gene77045:CDS | 40.0% | |
| CACAGGGTATATTTGCTCAA+AGG | - | chr4.3:70655301-70655320 | None:intergenic | 40.0% | |
| CACTTTCACTACCAAAGCAA+TGG | - | chr4.3:70653564-70653583 | None:intergenic | 40.0% | |
| CATCTAACACAGACACAACA+CGG | - | chr4.3:70652653-70652672 | None:intergenic | 40.0% | |
| CATCTTTGCTTCTGGCAAAA+TGG | + | chr4.3:70653866-70653885 | MS.gene77045:CDS | 40.0% | |
| CTTCATACGGTAGATTAACC+CGG | - | chr4.3:70655105-70655124 | None:intergenic | 40.0% | |
| GAGTGAGCAACAGTCTAAAT+TGG | + | chr4.3:70654337-70654356 | MS.gene77045:CDS | 40.0% | |
| GGAAAAAGAAAACATGGGCA+AGG | - | chr4.3:70653543-70653562 | None:intergenic | 40.0% | |
| GTGATGTCAAGTTCCCAATA+CGG | + | chr4.3:70654757-70654776 | MS.gene77045:CDS | 40.0% | |
| TATACTCTGCATTACGAGCT+TGG | - | chr4.3:70653447-70653466 | None:intergenic | 40.0% | |
| TGGTATGACTAGGTTTGTAC+TGG | + | chr4.3:70654308-70654327 | MS.gene77045:intron | 40.0% | |
| TTAGATACTCACTGAAGGGT+AGG | - | chr4.3:70652420-70652439 | None:intergenic | 40.0% | |
| TTCATACGGTAGATTAACCC+GGG | - | chr4.3:70655104-70655123 | None:intergenic | 40.0% | |
| TTCTCAAATAACTACCGGTG+TGG | - | chr4.3:70652600-70652619 | None:intergenic | 40.0% | |
| ! | ACCAAGCTTTTGGATGATAC+GGG | - | chr4.3:70654553-70654572 | None:intergenic | 40.0% |
| ! | ATCGCTTGACGTGATTTGTA+TGG | + | chr4.3:70654857-70654876 | MS.gene77045:intron | 40.0% |
| ! | ATGGAGCACTAACACAAACA+TGG | + | chr4.3:70652550-70652569 | MS.gene77045:intron | 40.0% |
| ! | CGAGTGAACCATGATTTTGA+GGG | - | chr4.3:70655226-70655245 | None:intergenic | 40.0% |
| ! | CTATGCCATTTGTGTTGGAT+TGG | + | chr4.3:70654460-70654479 | MS.gene77045:intron | 40.0% |
| ! | CTGAACTTGCTTATATGGGA+TGG | + | chr4.3:70655057-70655076 | MS.gene77045:intron | 40.0% |
| ! | GATGGATTTACCTGGATTGA+GGG | + | chr4.3:70652718-70652737 | MS.gene77045:intron | 40.0% |
| ! | GTTTTGCTGCTGTCATTATG+AGG | + | chr4.3:70653817-70653836 | MS.gene77045:CDS | 40.0% |
| ! | TATGCTTAGCTTTCTTGTCC+GGG | + | chr4.3:70652870-70652889 | MS.gene77045:intron | 40.0% |
| ! | TCGAGTGAACCATGATTTTG+AGG | - | chr4.3:70655227-70655246 | None:intergenic | 40.0% |
| ! | TCGCTTGACGTGATTTGTAT+GGG | + | chr4.3:70654858-70654877 | MS.gene77045:intron | 40.0% |
| !! | AGCTACTTGGCTTTATGCTT+TGG | - | chr4.3:70652809-70652828 | None:intergenic | 40.0% |
| !! | TGATGGATTTACCTGGATTG+AGG | + | chr4.3:70652717-70652736 | MS.gene77045:intron | 40.0% |
| !! | TTCCTTTGGCTTTATGCTTC+AGG | + | chr4.3:70654704-70654723 | MS.gene77045:intron | 40.0% |
| !!! | TCTTTTAGAATCCTGGTAGG+AGG | + | chr4.3:70654016-70654035 | MS.gene77045:intron | 40.0% |
| ACTGCACTCATCTTTGCTTC+TGG | + | chr4.3:70653858-70653877 | MS.gene77045:CDS | 45.0% | |
| AGCATAAAGCCAAGTAGCTG+TGG | + | chr4.3:70652810-70652829 | MS.gene77045:intron | 45.0% | |
| AGGCTCCAATCCAACACAAA+TGG | - | chr4.3:70654468-70654487 | None:intergenic | 45.0% | |
| AGGGTCTTGCATATTCCCAT+GGG | + | chr4.3:70654784-70654803 | MS.gene77045:CDS | 45.0% | |
| ATGGCTGATCAAGGATTGGA+AGG | + | chr4.3:70652351-70652370 | MS.gene77045:CDS | 45.0% | |
| CATCGGACATGACATTGACA+CGG | + | chr4.3:70652574-70652593 | MS.gene77045:intron | 45.0% | |
| GACTAAGCACGCGGTTTAAA+TGG | + | chr4.3:70652973-70652992 | MS.gene77045:intron | 45.0% | |
| GATCTAGCGAAACATCCTTC+TGG | + | chr4.3:70652387-70652406 | MS.gene77045:CDS | 45.0% | |
| GATTGTTCTAACAGGAGCCA+AGG | + | chr4.3:70655163-70655182 | MS.gene77045:CDS | 45.0% | |
| GCATAAAGCCAAGTAGCTGT+GGG | + | chr4.3:70652811-70652830 | MS.gene77045:intron | 45.0% | |
| GTCTAAATTGGCAGCAAGGA+AGG | + | chr4.3:70654349-70654368 | MS.gene77045:CDS | 45.0% | |
| GTGTCTGTGTTAGATGCTGA+TGG | + | chr4.3:70652657-70652676 | MS.gene77045:intron | 45.0% | |
| TACACTAGAGAAAGCCCCAT+GGG | - | chr4.3:70654802-70654821 | None:intergenic | 45.0% | |
| TGATTCACTCTGTATGGCCA+TGG | + | chr4.3:70654138-70654157 | MS.gene77045:intron | 45.0% | |
| TGGCTGATCAAGGATTGGAA+GGG | + | chr4.3:70652352-70652371 | MS.gene77045:CDS | 45.0% | |
| TTACACTAGAGAAAGCCCCA+TGG | - | chr4.3:70654803-70654822 | None:intergenic | 45.0% | |
| TTAGAATCCTGGTAGGAGGA+GGG | + | chr4.3:70654020-70654039 | MS.gene77045:intron | 45.0% | |
| ! | CGCTTGACGTGATTTGTATG+GGG | + | chr4.3:70654859-70654878 | MS.gene77045:intron | 45.0% |
| ! | GGAGGACCTCAAAGTTGATT+AGG | + | chr4.3:70654428-70654447 | MS.gene77045:intron | 45.0% |
| ! | TATGAACCTGAGCTGTTTCC+CGG | + | chr4.3:70655083-70655102 | MS.gene77045:CDS | 45.0% |
| ! | TTTAGAATCCTGGTAGGAGG+AGG | + | chr4.3:70654019-70654038 | MS.gene77045:intron | 45.0% |
| AAGTTCCCAATACGGCTGGA+GGG | + | chr4.3:70654765-70654784 | MS.gene77045:CDS | 50.0% | |
| ATTAACCCGGGAAACAGCTC+AGG | - | chr4.3:70655092-70655111 | None:intergenic | 50.0% | |
| CACTCTGTATGGCCATGGTT+GGG | + | chr4.3:70654143-70654162 | MS.gene77045:intron | 50.0% | |
| GAGGGTCTTGCATATTCCCA+TGG | + | chr4.3:70654783-70654802 | MS.gene77045:CDS | 50.0% | |
| GCCCGTATCATCCAAAAGCT+TGG | + | chr4.3:70654549-70654568 | MS.gene77045:CDS | 50.0% | |
| GGATGTTTCGCTAGATCCAC+AGG | - | chr4.3:70652384-70652403 | None:intergenic | 50.0% | |
| GGGTCTTGCATATTCCCATG+GGG | + | chr4.3:70654785-70654804 | MS.gene77045:CDS | 50.0% | |
| GTTTCGCTAGATCCACAGGT+TGG | - | chr4.3:70652380-70652399 | None:intergenic | 50.0% | |
| TCACTCTGTATGGCCATGGT+TGG | + | chr4.3:70654142-70654161 | MS.gene77045:intron | 50.0% | |
| TGTCAAGTTCCCAATACGGC+TGG | + | chr4.3:70654761-70654780 | MS.gene77045:CDS | 50.0% | |
| ! | ATGAACCTGAGCTGTTTCCC+GGG | + | chr4.3:70655084-70655103 | MS.gene77045:CDS | 50.0% |
| AAGCCAAGTAGCTGTGGGAG+AGG | + | chr4.3:70652816-70652835 | MS.gene77045:intron | 55.0% | |
| AGCTGTGGGAGAGGCCATTA+TGG | + | chr4.3:70652825-70652844 | MS.gene77045:intron | 55.0% | |
| ATTGGAAGGGAGCCAACCTG+TGG | + | chr4.3:70652365-70652384 | MS.gene77045:CDS | 55.0% | |
| CAAGACCCTCCAGCCGTATT+GGG | - | chr4.3:70654773-70654792 | None:intergenic | 55.0% | |
| CAAGTTCCCAATACGGCTGG+AGG | + | chr4.3:70654764-70654783 | MS.gene77045:CDS | 55.0% | |
| CTAATGACCCTCCTCCTACC+AGG | - | chr4.3:70654030-70654049 | None:intergenic | 55.0% | |
| TGACATTGACACGGCCACAC+CGG | + | chr4.3:70652583-70652602 | MS.gene77045:intron | 55.0% | |
| ! | TCCTGAACTCGGTGAGCACA+GGG | - | chr4.3:70655317-70655336 | None:intergenic | 55.0% |
| ! | TTCCTGAACTCGGTGAGCAC+AGG | - | chr4.3:70655318-70655337 | None:intergenic | 55.0% |
| ACCCTGTGCTCACCGAGTTC+AGG | + | chr4.3:70655313-70655332 | MS.gene77045:CDS | 60.0% | |
| AGGGTAGGCACGATCCCAGA+AGG | - | chr4.3:70652405-70652424 | None:intergenic | 60.0% | |
| GCAAGACCCTCCAGCCGTAT+TGG | - | chr4.3:70654774-70654793 | None:intergenic | 60.0% | |
| TGGCCTCTCCCACAGCTACT+TGG | - | chr4.3:70652822-70652841 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 70652351 | 70655349 | 70652351 | ID=MS.gene77045 |
| chr4.3 | mRNA | 70652351 | 70655349 | 70652351 | ID=MS.gene77045.t1;Parent=MS.gene77045 |
| chr4.3 | exon | 70652351 | 70652427 | 70652351 | ID=MS.gene77045.t1.exon1;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70652351 | 70652427 | 70652351 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70653387 | 70653474 | 70653387 | ID=MS.gene77045.t1.exon2;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70653387 | 70653474 | 70653387 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70653816 | 70653887 | 70653816 | ID=MS.gene77045.t1.exon3;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70653816 | 70653887 | 70653816 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70654320 | 70654370 | 70654320 | ID=MS.gene77045.t1.exon4;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70654320 | 70654370 | 70654320 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70654546 | 70654590 | 70654546 | ID=MS.gene77045.t1.exon5;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70654546 | 70654590 | 70654546 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70654726 | 70654818 | 70654726 | ID=MS.gene77045.t1.exon6;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70654726 | 70654818 | 70654726 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70655083 | 70655184 | 70655083 | ID=MS.gene77045.t1.exon7;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70655083 | 70655184 | 70655083 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| chr4.3 | exon | 70655276 | 70655349 | 70655276 | ID=MS.gene77045.t1.exon8;Parent=MS.gene77045.t1 |
| chr4.3 | CDS | 70655276 | 70655349 | 70655276 | ID=cds.MS.gene77045.t1;Parent=MS.gene77045.t1 |
| Gene Sequence |
| Protein sequence |
