Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76728.t1 | KEH29211.1 | 99.5 | 200 | 1 | 0 | 1 | 200 | 1 | 200 | 5.10E-105 | 390.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76728.t1 | P26357 | 95.0 | 200 | 10 | 0 | 1 | 200 | 1 | 200 | 5.3e-103 | 375.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76728.t1 | A0A072UID4 | 99.5 | 200 | 1 | 0 | 1 | 200 | 1 | 200 | 3.7e-105 | 390.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76728.t1 | MTR_4g029010 | 99.500 | 200 | 1 | 0 | 1 | 200 | 1 | 200 | 7.14e-147 | 407 |
| MS.gene76728.t1 | MTR_7g072580 | 94.500 | 200 | 11 | 0 | 1 | 200 | 1 | 200 | 3.88e-139 | 388 |
| MS.gene76728.t1 | MTR_7g072580 | 94.500 | 200 | 11 | 0 | 1 | 200 | 1 | 200 | 3.70e-138 | 387 |
| MS.gene76728.t1 | MTR_4g029010 | 98.621 | 145 | 1 | 1 | 1 | 145 | 1 | 144 | 8.51e-102 | 291 |
| MS.gene76728.t1 | MTR_4g029010 | 99.296 | 142 | 1 | 0 | 1 | 142 | 1 | 142 | 1.86e-101 | 291 |
| MS.gene76728.t1 | MTR_3g065900 | 68.246 | 211 | 67 | 0 | 1 | 211 | 1 | 211 | 5.48e-100 | 289 |
| MS.gene76728.t1 | MTR_7g072580 | 95.070 | 142 | 7 | 0 | 1 | 142 | 1 | 142 | 3.04e-96 | 278 |
| MS.gene76728.t1 | MTR_3g066070 | 68.306 | 183 | 58 | 0 | 21 | 203 | 54 | 236 | 2.04e-84 | 251 |
| MS.gene76728.t1 | MTR_3g065900 | 62.000 | 200 | 59 | 1 | 1 | 200 | 15 | 197 | 9.70e-80 | 237 |
| MS.gene76728.t1 | MTR_3g066070 | 68.571 | 175 | 52 | 1 | 26 | 200 | 59 | 230 | 2.26e-77 | 233 |
| MS.gene76728.t1 | MTR_3g066070 | 68.571 | 175 | 52 | 1 | 26 | 200 | 59 | 230 | 2.26e-77 | 233 |
| MS.gene76728.t1 | MTR_3g066070 | 62.360 | 178 | 50 | 1 | 26 | 203 | 59 | 219 | 1.26e-69 | 213 |
| MS.gene76728.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 10 | 167 | 4.37e-66 | 202 |
| MS.gene76728.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 7.58e-66 | 203 |
| MS.gene76728.t1 | MTR_3g066070 | 61.714 | 175 | 50 | 1 | 26 | 200 | 59 | 216 | 7.58e-66 | 203 |
| MS.gene76728.t1 | MTR_3g066070 | 59.859 | 142 | 40 | 1 | 62 | 203 | 1 | 125 | 1.29e-50 | 161 |
| MS.gene76728.t1 | MTR_4g122610 | 54.348 | 138 | 35 | 5 | 1 | 111 | 1 | 137 | 9.52e-37 | 127 |
| MS.gene76728.t1 | MTR_3g066070 | 58.120 | 117 | 32 | 1 | 26 | 142 | 59 | 158 | 1.23e-36 | 126 |
| MS.gene76728.t1 | MTR_4g122635 | 48.571 | 140 | 46 | 5 | 6 | 142 | 1 | 117 | 6.05e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76728.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 4.80e-134 | 375 |
| MS.gene76728.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 4.80e-134 | 375 |
| MS.gene76728.t1 | AT1G55520 | 92.000 | 200 | 16 | 0 | 1 | 200 | 1 | 200 | 4.80e-134 | 375 |
| MS.gene76728.t1 | AT3G13445 | 90.500 | 200 | 19 | 0 | 1 | 200 | 1 | 200 | 1.02e-132 | 372 |
| MS.gene76728.t1 | AT1G55520 | 93.785 | 177 | 11 | 0 | 1 | 177 | 1 | 177 | 4.72e-120 | 339 |
| MS.gene76728.t1 | AT3G13445 | 89.730 | 185 | 19 | 0 | 1 | 185 | 1 | 185 | 7.59e-120 | 339 |
Find 54 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTCAATGCTAGGTTTA+AGG | 0.179203 | 4.1:+70923577 | MS.gene76728:CDS |
| TATTGTTTCAACAGTCAATT+TGG | 0.195167 | 4.1:+70922396 | MS.gene76728:CDS |
| CATCTTTGCTTCTGGCAAAA+TGG | 0.262684 | 4.1:+70922872 | MS.gene76728:CDS |
| TATGAACCTGAGCTGTTTCC+CGG | 0.266557 | 4.1:+70924094 | MS.gene76728:CDS |
| TAGCATTGAAACCAAGCTTT+TGG | 0.303301 | 4.1:-70923568 | None:intergenic |
| ACCCTGTGCTTACTGAGTTC+AGG | 0.334879 | 4.1:+70924324 | MS.gene76728:CDS |
| GATCTAGCGAAACATCCTTC+TGG | 0.344452 | 4.1:+70921403 | MS.gene76728:CDS |
| ACTGCACTCATCTTTGCTTC+TGG | 0.346245 | 4.1:+70922864 | MS.gene76728:CDS |
| ACTATAACAATCGGCATAGA+TGG | 0.362818 | 4.1:-70924393 | None:intergenic |
| CAAGACCCTCCAACCGTATT+GGG | 0.367935 | 4.1:-70923781 | None:intergenic |
| GAGTGAGCAACAGTCTAAAT+TGG | 0.370609 | 4.1:+70923345 | MS.gene76728:CDS |
| TCTGGAAAGATTGTTCTAAC+AGG | 0.377671 | 4.1:+70924166 | MS.gene76728:CDS |
| AAAATTAGCAAGACAATCTT+CGG | 0.383429 | 4.1:-70924139 | None:intergenic |
| TTCAAGATTCAGAACATTGT+TGG | 0.416837 | 4.1:+70923740 | MS.gene76728:CDS |
| TATACTCTGCATTACGAGCT+TGG | 0.419027 | 4.1:-70922450 | None:intergenic |
| GCAAGACCCTCCAACCGTAT+TGG | 0.421333 | 4.1:-70923782 | None:intergenic |
| AAAAGCTTGGTTTCAATGCT+AGG | 0.425174 | 4.1:+70923570 | MS.gene76728:CDS |
| ATCTAGCGAAACATCCTTCT+GGG | 0.437658 | 4.1:+70921404 | MS.gene76728:CDS |
| GAGGGTCTTGCATATTCCCA+TGG | 0.454651 | 4.1:+70923794 | MS.gene76728:CDS |
| TGGTATGACTAGGTTTGTAC+TGG | 0.465663 | 4.1:+70923316 | MS.gene76728:intron |
| AGTCAATTTGGACACTAAGT+TGG | 0.477037 | 4.1:+70922408 | MS.gene76728:CDS |
| AGGGTCTTGCATATTCCCAT+GGG | 0.478905 | 4.1:+70923795 | MS.gene76728:CDS |
| TTCGATGAAACTATAACAAT+CGG | 0.479683 | 4.1:-70924402 | None:intergenic |
| GTCTAAATTGGCAGCAAGGA+AGG | 0.482016 | 4.1:+70923357 | MS.gene76728:CDS |
| CAATCTTCGGTTTCTTCATA+CGG | 0.489819 | 4.1:-70924126 | None:intergenic |
| ATTAACCCGGGAAACAGCTC+AGG | 0.491192 | 4.1:-70924100 | None:intergenic |
| TTCCTGAACTCAGTAAGCAC+AGG | 0.492115 | 4.1:-70924326 | None:intergenic |
| CTTCATACGGTAGATTAACC+CGG | 0.497293 | 4.1:-70924113 | None:intergenic |
| CAAGTTCCCAATACGGTTGG+AGG | 0.507180 | 4.1:+70923775 | MS.gene76728:CDS |
| GGATGTTTCGCTAGATCCAC+AGG | 0.507959 | 4.1:-70921397 | None:intergenic |
| TTAAGGTTGATGGCTGATCA+AGG | 0.508347 | 4.1:+70921358 | None:intergenic |
| GTGATGTCAAGTTCCCAATA+CGG | 0.512187 | 4.1:+70923768 | MS.gene76728:CDS |
| GCCCGTATCATCCAAAAGCT+TGG | 0.514743 | 4.1:+70923557 | MS.gene76728:CDS |
| TTTGTATTATCAGGTGAGAG+AGG | 0.516176 | 4.1:+70924274 | MS.gene76728:intron |
| TCACGTCAGTAAATCAATAG+TGG | 0.527855 | 4.1:-70924428 | None:intergenic |
| GTTGATGGCTGATCAAGGAT+TGG | 0.555740 | 4.1:+70921363 | None:intergenic |
| ATGGCTGATCAAGGATTGGA+AGG | 0.558814 | 4.1:+70921367 | MS.gene76728:CDS |
| ATGAACCTGAGCTGTTTCCC+GGG | 0.563246 | 4.1:+70924095 | MS.gene76728:CDS |
| CACAGGGTATATTTGCTCAA+AGG | 0.564184 | 4.1:-70924309 | None:intergenic |
| AACAGTCTAAATTGGCAGCA+AGG | 0.569501 | 4.1:+70923353 | MS.gene76728:CDS |
| GATTGTTCTAACAGGAGCCA+AGG | 0.576547 | 4.1:+70924174 | MS.gene76728:CDS |
| TTAGATACTCACTGAAGGGT+AGG | 0.578649 | 4.1:-70921433 | None:intergenic |
| TACACTAGAGAAAGCCCCAT+GGG | 0.590023 | 4.1:-70923810 | None:intergenic |
| TGTCAAGTTCCCAATACGGT+TGG | 0.593973 | 4.1:+70923772 | MS.gene76728:CDS |
| TCCTGAACTCAGTAAGCACA+GGG | 0.600156 | 4.1:-70924325 | None:intergenic |
| TTCATACGGTAGATTAACCC+GGG | 0.608069 | 4.1:-70924112 | None:intergenic |
| GTTTCGCTAGATCCACAGGT+TGG | 0.617374 | 4.1:-70921393 | None:intergenic |
| AAGTTCCCAATACGGTTGGA+GGG | 0.627507 | 4.1:+70923776 | MS.gene76728:CDS |
| AGGGTAGGCACGATCCCAGA+AGG | 0.629550 | 4.1:-70921418 | None:intergenic |
| ATTGGAAGGGAGCCAACCTG+TGG | 0.653530 | 4.1:+70921381 | MS.gene76728:CDS |
| TAATGCAGAGTATAATCCCA+AGG | 0.657375 | 4.1:+70922459 | MS.gene76728:CDS |
| GGGTCTTGCATATTCCCATG+GGG | 0.664391 | 4.1:+70923796 | MS.gene76728:CDS |
| TGGCTGATCAAGGATTGGAA+GGG | 0.672278 | 4.1:+70921368 | MS.gene76728:CDS |
| TTACACTAGAGAAAGCCCCA+TGG | 0.679761 | 4.1:-70923811 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGCATAATAATTATTACAT+TGG | - | chr4.1:70922278-70922297 | None:intergenic | 15.0% |
| !! | ATACAAAAAATGTGTATATA+AGG | - | chr4.1:70924261-70924280 | None:intergenic | 15.0% |
| !! | TTATTATTTACTTTGAATTC+TGG | + | chr4.1:70922302-70922321 | MS.gene76728:intron | 15.0% |
| !!! | ATTTATTTTGGTTTAGTAAA+AGG | - | chr4.1:70923225-70923244 | None:intergenic | 15.0% |
| !! | CACAAAAAAATTTCAAAAAG+TGG | - | chr4.1:70922620-70922639 | None:intergenic | 20.0% |
| !! | TAATATTCTCAAATAACTAC+CGG | - | chr4.1:70921621-70921640 | None:intergenic | 20.0% |
| !! | TACAAACAATAATACCATAA+TGG | - | chr4.1:70921858-70921877 | None:intergenic | 20.0% |
| !! | TAGTTTAATTGAATCATAAG+TGG | + | chr4.1:70921489-70921508 | MS.gene76728:intron | 20.0% |
| !! | TATAACGTCAAAAATATTTG+AGG | - | chr4.1:70922060-70922079 | None:intergenic | 20.0% |
| !! | TGAGTATAAAATTATTACCT+TGG | - | chr4.1:70924194-70924213 | None:intergenic | 20.0% |
| !! | TTGTAGTCAAATAAAAAGAT+TGG | + | chr4.1:70922957-70922976 | MS.gene76728:intron | 20.0% |
| !!! | AATTTTTTTGTGTTTCTTTC+TGG | + | chr4.1:70922628-70922647 | MS.gene76728:intron | 20.0% |
| !!! | AGTGTAAGCTATTTTATTTA+CGG | + | chr4.1:70923827-70923846 | MS.gene76728:intron | 20.0% |
| !!! | CAAATATTTTTGACGTTATA+TGG | + | chr4.1:70922060-70922079 | MS.gene76728:intron | 20.0% |
| !!! | GTAAATTTTGAAAAATAAGC+AGG | - | chr4.1:70923496-70923515 | None:intergenic | 20.0% |
| !!! | TACACATTTTTTGTATTATC+AGG | + | chr4.1:70924265-70924284 | MS.gene76728:intron | 20.0% |
| !!! | TAGAAGTGATTTAAAATTGT+TGG | + | chr4.1:70921538-70921557 | MS.gene76728:intron | 20.0% |
| !!! | TGTACTGTATCAATTTATTT+TGG | - | chr4.1:70923237-70923256 | None:intergenic | 20.0% |
| !!! | TTTAAAATTGTTGGTATCTA+TGG | + | chr4.1:70921547-70921566 | MS.gene76728:intron | 20.0% |
| ! | AAAATTAGCAAGACAATCTT+CGG | - | chr4.1:70924142-70924161 | None:intergenic | 25.0% |
| ! | AAGAAAATGAAAATCGATGA+TGG | + | chr4.1:70921716-70921735 | MS.gene76728:intron | 25.0% |
| ! | AAGAAAGCTAAGCATAAATA+AGG | - | chr4.1:70921882-70921901 | None:intergenic | 25.0% |
| ! | AATATTTAGATACTCACTGA+AGG | - | chr4.1:70921441-70921460 | None:intergenic | 25.0% |
| ! | AATGACTTCCTAAATATCAT+TGG | - | chr4.1:70921946-70921965 | None:intergenic | 25.0% |
| ! | AGTTCTGCATAATAAACATA+CGG | - | chr4.1:70923074-70923093 | None:intergenic | 25.0% |
| ! | ATATTTAGATACTCACTGAA+GGG | - | chr4.1:70921440-70921459 | None:intergenic | 25.0% |
| ! | ATGACTTCCTAAATATCATT+GGG | - | chr4.1:70921945-70921964 | None:intergenic | 25.0% |
| ! | ATGATTTCCCAATGATATTT+AGG | + | chr4.1:70921935-70921954 | MS.gene76728:intron | 25.0% |
| ! | ATTTCAGTGAAGATAATCAA+AGG | - | chr4.1:70923615-70923634 | None:intergenic | 25.0% |
| ! | GTAAAAGGAACATTACATTA+CGG | - | chr4.1:70923210-70923229 | None:intergenic | 25.0% |
| ! | TATATGGAAGTAAACAAAAG+CGG | + | chr4.1:70922076-70922095 | MS.gene76728:intron | 25.0% |
| ! | TATTGTTTCAACAGTCAATT+TGG | + | chr4.1:70922396-70922415 | MS.gene76728:CDS | 25.0% |
| ! | TTAAATGGAATGTGATAGAA+AGG | + | chr4.1:70922004-70922023 | MS.gene76728:intron | 25.0% |
| ! | TTAATTGAATCATAAGTGGA+GGG | + | chr4.1:70921493-70921512 | MS.gene76728:intron | 25.0% |
| ! | TTCGATGAAACTATAACAAT+CGG | - | chr4.1:70924405-70924424 | None:intergenic | 25.0% |
| ! | TTTAATTGAATCATAAGTGG+AGG | + | chr4.1:70921492-70921511 | MS.gene76728:intron | 25.0% |
| ! | TTTCAGTGAAGATAATCAAA+GGG | - | chr4.1:70923614-70923633 | None:intergenic | 25.0% |
| ! | TTTCTATTACATTGCATCAA+TGG | + | chr4.1:70921780-70921799 | MS.gene76728:intron | 25.0% |
| ! | TTTCTTCATGAAAAATCACA+AGG | - | chr4.1:70921702-70921721 | None:intergenic | 25.0% |
| !! | ATATACTGAACTTGCTTATA+TGG | + | chr4.1:70924063-70924082 | MS.gene76728:intron | 25.0% |
| !! | GAAAGTGAAAATTAACTTGA+TGG | + | chr4.1:70922583-70922602 | MS.gene76728:intron | 25.0% |
| !! | GTATTTGCAGAATATTGATT+TGG | - | chr4.1:70922749-70922768 | None:intergenic | 25.0% |
| !! | TATACTGAACTTGCTTATAT+GGG | + | chr4.1:70924064-70924083 | MS.gene76728:intron | 25.0% |
| !! | TGATTTGGAATAACAAAAGA+GGG | - | chr4.1:70922734-70922753 | None:intergenic | 25.0% |
| !! | TTATGCTGTTCTAATTTTAC+TGG | + | chr4.1:70923296-70923315 | MS.gene76728:intron | 25.0% |
| !!! | TATTTTTACCCTCAAAATCA+TGG | + | chr4.1:70924226-70924245 | MS.gene76728:intron | 25.0% |
| !!! | TTGATTTGGAATAACAAAAG+AGG | - | chr4.1:70922735-70922754 | None:intergenic | 25.0% |
| AAGAGCTGTAATATAGTTGT+TGG | + | chr4.1:70921909-70921928 | MS.gene76728:intron | 30.0% | |
| AAGGAATCAACTACTAATCA+AGG | - | chr4.1:70923701-70923720 | None:intergenic | 30.0% | |
| AAGTAACTCTACATGCAATA+TGG | - | chr4.1:70923998-70924017 | None:intergenic | 30.0% | |
| AATTGATACAGTACATGTGA+AGG | + | chr4.1:70923242-70923261 | MS.gene76728:intron | 30.0% | |
| AGCAATGGAAAAAGAAAACA+TGG | - | chr4.1:70922555-70922574 | None:intergenic | 30.0% | |
| AGGAAAAATCAACAATGGTA+TGG | + | chr4.1:70924344-70924363 | MS.gene76728:CDS | 30.0% | |
| AGGTATCATTCAAGCAAAAA+GGG | + | chr4.1:70922024-70922043 | MS.gene76728:intron | 30.0% | |
| AGTTCAGGAAAAATCAACAA+TGG | + | chr4.1:70924339-70924358 | MS.gene76728:CDS | 30.0% | |
| ATATGGAAGTAAACAAAAGC+GGG | + | chr4.1:70922077-70922096 | MS.gene76728:intron | 30.0% | |
| ATTCATCCTAATCAACTTTG+AGG | - | chr4.1:70923445-70923464 | None:intergenic | 30.0% | |
| GCAATGGAAAAAGAAAACAT+GGG | - | chr4.1:70922554-70922573 | None:intergenic | 30.0% | |
| GGAAAAATCAACAATGGTAT+GGG | + | chr4.1:70924345-70924364 | MS.gene76728:CDS | 30.0% | |
| TGAGGGTAAAAATAACAGAA+GGG | - | chr4.1:70924220-70924239 | None:intergenic | 30.0% | |
| TGCTATTAATGTCTCTCTAA+CGG | + | chr4.1:70923415-70923434 | MS.gene76728:intron | 30.0% | |
| TTCAAGATTCAGAACATTGT+TGG | + | chr4.1:70923740-70923759 | MS.gene76728:CDS | 30.0% | |
| TTGAGGGTAAAAATAACAGA+AGG | - | chr4.1:70924221-70924240 | None:intergenic | 30.0% | |
| TTGTGTTAGAATGTAGATGA+TGG | + | chr4.1:70923966-70923985 | MS.gene76728:intron | 30.0% | |
| ! | AAATTTTAAACTCCCAACCA+TGG | - | chr4.1:70923164-70923183 | None:intergenic | 30.0% |
| ! | AAGGTATCATTCAAGCAAAA+AGG | + | chr4.1:70922023-70922042 | MS.gene76728:intron | 30.0% |
| ! | ATAAACTATGCCATTTGTGT+TGG | + | chr4.1:70923463-70923482 | MS.gene76728:intron | 30.0% |
| ! | CTAATTTTACTGGTATGACT+AGG | + | chr4.1:70923306-70923325 | MS.gene76728:intron | 30.0% |
| ! | GTTTTCTTTTTCCATTGCTT+TGG | + | chr4.1:70922556-70922575 | MS.gene76728:intron | 30.0% |
| ! | TGATTAGTAGTTGATTCCTT+CGG | + | chr4.1:70923701-70923720 | MS.gene76728:intron | 30.0% |
| ! | TTGATTTGATTCACTCTGTA+TGG | + | chr4.1:70923138-70923157 | MS.gene76728:intron | 30.0% |
| !! | GTCTTGCTAATTTTTGTTTC+TGG | + | chr4.1:70924148-70924167 | MS.gene76728:CDS | 30.0% |
| !! | TAGAATGTAGATGATGGAAA+GGG | + | chr4.1:70923972-70923991 | MS.gene76728:intron | 30.0% |
| !! | TTAGAATGTAGATGATGGAA+AGG | + | chr4.1:70923971-70923990 | MS.gene76728:intron | 30.0% |
| !!! | TTGATTCTCTTTTAGAATCC+TGG | + | chr4.1:70923015-70923034 | MS.gene76728:intron | 30.0% |
| AAAAATTTAGCCCTCAATCC+AGG | - | chr4.1:70921747-70921766 | None:intergenic | 35.0% | |
| AAAAGCTTGGTTTCAATGCT+AGG | + | chr4.1:70923570-70923589 | MS.gene76728:CDS | 35.0% | |
| AAATTATTCGACTAAGCACG+CGG | + | chr4.1:70921980-70921999 | MS.gene76728:intron | 35.0% | |
| AACATTACATTACGGACATG+AGG | - | chr4.1:70923202-70923221 | None:intergenic | 35.0% | |
| AACTATATTACAGCTCTTCC+CGG | - | chr4.1:70921907-70921926 | None:intergenic | 35.0% | |
| ACTAACACAAACATGGACAT+CGG | + | chr4.1:70921573-70921592 | MS.gene76728:intron | 35.0% | |
| ACTATAACAATCGGCATAGA+TGG | - | chr4.1:70924396-70924415 | None:intergenic | 35.0% | |
| AGTCAATTTGGACACTAAGT+TGG | + | chr4.1:70922408-70922427 | MS.gene76728:CDS | 35.0% | |
| CAAGAGATTAAACTTGCCTT+GGG | - | chr4.1:70922478-70922497 | None:intergenic | 35.0% | |
| CAATCTTCGGTTTCTTCATA+CGG | - | chr4.1:70924129-70924148 | None:intergenic | 35.0% | |
| GAGGGTAAAAATAACAGAAG+GGG | - | chr4.1:70924219-70924238 | None:intergenic | 35.0% | |
| GATTTGTATGGGGATAAGTA+TGG | + | chr4.1:70923880-70923899 | MS.gene76728:intron | 35.0% | |
| TAATGCAGAGTATAATCCCA+AGG | + | chr4.1:70922459-70922478 | MS.gene76728:CDS | 35.0% | |
| TATTAATGTCTCTCTAACGG+AGG | + | chr4.1:70923418-70923437 | MS.gene76728:intron | 35.0% | |
| TCAAGAGATTAAACTTGCCT+TGG | - | chr4.1:70922479-70922498 | None:intergenic | 35.0% | |
| TCTGGAAAGATTGTTCTAAC+AGG | + | chr4.1:70924166-70924185 | MS.gene76728:CDS | 35.0% | |
| TGGTTTCAATGCTAGGTTTA+AGG | + | chr4.1:70923577-70923596 | MS.gene76728:CDS | 35.0% | |
| TTCTGCAAGTAAACAGACAT+TGG | - | chr4.1:70922375-70922394 | None:intergenic | 35.0% | |
| TTTGTATTATCAGGTGAGAG+AGG | + | chr4.1:70924274-70924293 | MS.gene76728:intron | 35.0% | |
| ! | AACCAAGCTTTTGGATGATA+CGG | - | chr4.1:70923562-70923581 | None:intergenic | 35.0% |
| ! | ATCGCTTGATGTGATTTGTA+TGG | + | chr4.1:70923868-70923887 | MS.gene76728:intron | 35.0% |
| ! | CATTGGTAGTAAACAGACAT+TGG | - | chr4.1:70922261-70922280 | None:intergenic | 35.0% |
| ! | CTAGTGAACCATGATTTTGA+GGG | - | chr4.1:70924237-70924256 | None:intergenic | 35.0% |
| ! | TCGCTTGATGTGATTTGTAT+GGG | + | chr4.1:70923869-70923888 | MS.gene76728:intron | 35.0% |
| ! | TTATGCTTAGCTTTCTTGTC+CGG | + | chr4.1:70921885-70921904 | MS.gene76728:intron | 35.0% |
| !! | AAATCGATGATGGATTTACC+TGG | + | chr4.1:70921726-70921745 | MS.gene76728:intron | 35.0% |
| !! | AAGATGAGTGCAGTTGTTTT+TGG | - | chr4.1:70922858-70922877 | None:intergenic | 35.0% |
| !! | GAAAAGCACTTATATGACAG+AGG | - | chr4.1:70922922-70922941 | None:intergenic | 35.0% |
| !! | TAGCATTGAAACCAAGCTTT+TGG | - | chr4.1:70923571-70923590 | None:intergenic | 35.0% |
| !!! | TTCTCTTTTAGAATCCTGGT+AGG | + | chr4.1:70923019-70923038 | MS.gene76728:intron | 35.0% |
| AACAGTCTAAATTGGCAGCA+AGG | + | chr4.1:70923353-70923372 | MS.gene76728:CDS | 40.0% | |
| AAGCACTTATATGACAGAGG+TGG | - | chr4.1:70922919-70922938 | None:intergenic | 40.0% | |
| ATCTAGCGAAACATCCTTCT+GGG | + | chr4.1:70921404-70921423 | MS.gene76728:CDS | 40.0% | |
| CACAGGGTATATTTGCTCAA+AGG | - | chr4.1:70924312-70924331 | None:intergenic | 40.0% | |
| CACTTTCACTACCAAAGCAA+TGG | - | chr4.1:70922570-70922589 | None:intergenic | 40.0% | |
| CATCTAACACAGACACAACA+CGG | - | chr4.1:70921669-70921688 | None:intergenic | 40.0% | |
| CATCTTTGCTTCTGGCAAAA+TGG | + | chr4.1:70922872-70922891 | MS.gene76728:CDS | 40.0% | |
| CCTCAAAATCATGGTTCACT+AGG | + | chr4.1:70924235-70924254 | MS.gene76728:intron | 40.0% | |
| CTTCATACGGTAGATTAACC+CGG | - | chr4.1:70924116-70924135 | None:intergenic | 40.0% | |
| GAGTGAGCAACAGTCTAAAT+TGG | + | chr4.1:70923345-70923364 | MS.gene76728:CDS | 40.0% | |
| GGAAAAAGAAAACATGGGCA+AGG | - | chr4.1:70922549-70922568 | None:intergenic | 40.0% | |
| GTGATGTCAAGTTCCCAATA+CGG | + | chr4.1:70923768-70923787 | MS.gene76728:CDS | 40.0% | |
| TATACTCTGCATTACGAGCT+TGG | - | chr4.1:70922453-70922472 | None:intergenic | 40.0% | |
| TGGTATGACTAGGTTTGTAC+TGG | + | chr4.1:70923316-70923335 | MS.gene76728:intron | 40.0% | |
| TTAGATACTCACTGAAGGGT+AGG | - | chr4.1:70921436-70921455 | None:intergenic | 40.0% | |
| TTCATACGGTAGATTAACCC+GGG | - | chr4.1:70924115-70924134 | None:intergenic | 40.0% | |
| TTCTCAAATAACTACCGGTG+TGG | - | chr4.1:70921616-70921635 | None:intergenic | 40.0% | |
| ! | ACCAAGCTTTTGGATGATAC+GGG | - | chr4.1:70923561-70923580 | None:intergenic | 40.0% |
| ! | ATGGAGCACTAACACAAACA+TGG | + | chr4.1:70921566-70921585 | MS.gene76728:intron | 40.0% |
| ! | CCTAGTGAACCATGATTTTG+AGG | - | chr4.1:70924238-70924257 | None:intergenic | 40.0% |
| ! | CGCTTGATGTGATTTGTATG+GGG | + | chr4.1:70923870-70923889 | MS.gene76728:intron | 40.0% |
| ! | CTATGCCATTTGTGTTGGAT+TGG | + | chr4.1:70923468-70923487 | MS.gene76728:intron | 40.0% |
| ! | CTGAACTTGCTTATATGGGA+TGG | + | chr4.1:70924068-70924087 | MS.gene76728:intron | 40.0% |
| ! | GATGGATTTACCTGGATTGA+GGG | + | chr4.1:70921734-70921753 | MS.gene76728:intron | 40.0% |
| ! | GTTTTGCTGCTGTCATTATG+AGG | + | chr4.1:70922823-70922842 | MS.gene76728:CDS | 40.0% |
| ! | TATGCTTAGCTTTCTTGTCC+GGG | + | chr4.1:70921886-70921905 | MS.gene76728:intron | 40.0% |
| !! | AGCTACTTGGCTTTATGCTT+TGG | - | chr4.1:70921825-70921844 | None:intergenic | 40.0% |
| !! | TGATGGATTTACCTGGATTG+AGG | + | chr4.1:70921733-70921752 | MS.gene76728:intron | 40.0% |
| !!! | TCTTTTAGAATCCTGGTAGG+AGG | + | chr4.1:70923022-70923041 | MS.gene76728:intron | 40.0% |
| AAGTTCCCAATACGGTTGGA+GGG | + | chr4.1:70923776-70923795 | MS.gene76728:CDS | 45.0% | |
| ACTGCACTCATCTTTGCTTC+TGG | + | chr4.1:70922864-70922883 | MS.gene76728:CDS | 45.0% | |
| AGCATAAAGCCAAGTAGCTG+TGG | + | chr4.1:70921826-70921845 | MS.gene76728:intron | 45.0% | |
| AGGCTCCAATCCAACACAAA+TGG | - | chr4.1:70923476-70923495 | None:intergenic | 45.0% | |
| AGGGTCTTGCATATTCCCAT+GGG | + | chr4.1:70923795-70923814 | MS.gene76728:CDS | 45.0% | |
| ATCACATCAAGCGATCACGA+AGG | - | chr4.1:70923863-70923882 | None:intergenic | 45.0% | |
| ATCCTGAAGCATAAAGCCGA+AGG | - | chr4.1:70923720-70923739 | None:intergenic | 45.0% | |
| ATGGCTGATCAAGGATTGGA+AGG | + | chr4.1:70921367-70921386 | MS.gene76728:CDS | 45.0% | |
| CATCGGACATGACATTGACA+CGG | + | chr4.1:70921590-70921609 | MS.gene76728:intron | 45.0% | |
| GACTAAGCACGCGGTTTAAA+TGG | + | chr4.1:70921989-70922008 | MS.gene76728:intron | 45.0% | |
| GATCTAGCGAAACATCCTTC+TGG | + | chr4.1:70921403-70921422 | MS.gene76728:CDS | 45.0% | |
| GATTGTTCTAACAGGAGCCA+AGG | + | chr4.1:70924174-70924193 | MS.gene76728:CDS | 45.0% | |
| GCATAAAGCCAAGTAGCTGT+GGG | + | chr4.1:70921827-70921846 | MS.gene76728:intron | 45.0% | |
| GTCTAAATTGGCAGCAAGGA+AGG | + | chr4.1:70923357-70923376 | MS.gene76728:CDS | 45.0% | |
| GTGTCTGTGTTAGATGCTGA+TGG | + | chr4.1:70921673-70921692 | MS.gene76728:intron | 45.0% | |
| TACACTAGAGAAAGCCCCAT+GGG | - | chr4.1:70923813-70923832 | None:intergenic | 45.0% | |
| TCACATCAAGCGATCACGAA+GGG | - | chr4.1:70923862-70923881 | None:intergenic | 45.0% | |
| TCCTGAACTCAGTAAGCACA+GGG | - | chr4.1:70924328-70924347 | None:intergenic | 45.0% | |
| TGATTCACTCTGTATGGCCA+TGG | + | chr4.1:70923144-70923163 | MS.gene76728:intron | 45.0% | |
| TGGCTGATCAAGGATTGGAA+GGG | + | chr4.1:70921368-70921387 | MS.gene76728:CDS | 45.0% | |
| TGTCAAGTTCCCAATACGGT+TGG | + | chr4.1:70923772-70923791 | MS.gene76728:CDS | 45.0% | |
| TTACACTAGAGAAAGCCCCA+TGG | - | chr4.1:70923814-70923833 | None:intergenic | 45.0% | |
| TTAGAATCCTGGTAGGAGGA+GGG | + | chr4.1:70923026-70923045 | MS.gene76728:intron | 45.0% | |
| TTCCTGAACTCAGTAAGCAC+AGG | - | chr4.1:70924329-70924348 | None:intergenic | 45.0% | |
| ! | GGAGGACCTCAAAGTTGATT+AGG | + | chr4.1:70923436-70923455 | MS.gene76728:intron | 45.0% |
| ! | TATGAACCTGAGCTGTTTCC+CGG | + | chr4.1:70924094-70924113 | MS.gene76728:CDS | 45.0% |
| ! | TTCCTTCGGCTTTATGCTTC+AGG | + | chr4.1:70923715-70923734 | MS.gene76728:intron | 45.0% |
| ! | TTTAGAATCCTGGTAGGAGG+AGG | + | chr4.1:70923025-70923044 | MS.gene76728:intron | 45.0% |
| ACCCTGTGCTTACTGAGTTC+AGG | + | chr4.1:70924324-70924343 | MS.gene76728:CDS | 50.0% | |
| ATTAACCCGGGAAACAGCTC+AGG | - | chr4.1:70924103-70924122 | None:intergenic | 50.0% | |
| CAAGACCCTCCAACCGTATT+GGG | - | chr4.1:70923784-70923803 | None:intergenic | 50.0% | |
| CAAGTTCCCAATACGGTTGG+AGG | + | chr4.1:70923775-70923794 | MS.gene76728:CDS | 50.0% | |
| CACTCTGTATGGCCATGGTT+GGG | + | chr4.1:70923149-70923168 | MS.gene76728:intron | 50.0% | |
| GAGGGTCTTGCATATTCCCA+TGG | + | chr4.1:70923794-70923813 | MS.gene76728:CDS | 50.0% | |
| GCCCGTATCATCCAAAAGCT+TGG | + | chr4.1:70923557-70923576 | MS.gene76728:CDS | 50.0% | |
| GGATGTTTCGCTAGATCCAC+AGG | - | chr4.1:70921400-70921419 | None:intergenic | 50.0% | |
| GGGTCTTGCATATTCCCATG+GGG | + | chr4.1:70923796-70923815 | MS.gene76728:CDS | 50.0% | |
| GTTTCGCTAGATCCACAGGT+TGG | - | chr4.1:70921396-70921415 | None:intergenic | 50.0% | |
| TCACTCTGTATGGCCATGGT+TGG | + | chr4.1:70923148-70923167 | MS.gene76728:intron | 50.0% | |
| ! | ATGAACCTGAGCTGTTTCCC+GGG | + | chr4.1:70924095-70924114 | MS.gene76728:CDS | 50.0% |
| AAGCCAAGTAGCTGTGGGAG+AGG | + | chr4.1:70921832-70921851 | MS.gene76728:intron | 55.0% | |
| AGCTGTGGGAGAGGCCATTA+TGG | + | chr4.1:70921841-70921860 | MS.gene76728:intron | 55.0% | |
| ATTGGAAGGGAGCCAACCTG+TGG | + | chr4.1:70921381-70921400 | MS.gene76728:CDS | 55.0% | |
| CTAATGACCCTCCTCCTACC+AGG | - | chr4.1:70923036-70923055 | None:intergenic | 55.0% | |
| GCAAGACCCTCCAACCGTAT+TGG | - | chr4.1:70923785-70923804 | None:intergenic | 55.0% | |
| TGACATTGACACGGCCACAC+CGG | + | chr4.1:70921599-70921618 | MS.gene76728:intron | 55.0% | |
| AGGGTAGGCACGATCCCAGA+AGG | - | chr4.1:70921421-70921440 | None:intergenic | 60.0% | |
| TGGCCTCTCCCACAGCTACT+TGG | - | chr4.1:70921838-70921857 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 70921367 | 70924445 | 70921367 | ID=MS.gene76728 |
| chr4.1 | mRNA | 70921367 | 70924445 | 70921367 | ID=MS.gene76728.t1;Parent=MS.gene76728 |
| chr4.1 | exon | 70921367 | 70921443 | 70921367 | ID=MS.gene76728.t1.exon1;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70921367 | 70921443 | 70921367 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70922393 | 70922480 | 70922393 | ID=MS.gene76728.t1.exon2;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70922393 | 70922480 | 70922393 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70922822 | 70922893 | 70922822 | ID=MS.gene76728.t1.exon3;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70922822 | 70922893 | 70922822 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70923328 | 70923378 | 70923328 | ID=MS.gene76728.t1.exon4;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70923328 | 70923378 | 70923328 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70923554 | 70923598 | 70923554 | ID=MS.gene76728.t1.exon5;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70923554 | 70923598 | 70923554 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70923737 | 70923829 | 70923737 | ID=MS.gene76728.t1.exon6;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70923737 | 70923829 | 70923737 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70924094 | 70924195 | 70924094 | ID=MS.gene76728.t1.exon7;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70924094 | 70924195 | 70924094 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| chr4.1 | exon | 70924287 | 70924445 | 70924287 | ID=MS.gene76728.t1.exon8;Parent=MS.gene76728.t1 |
| chr4.1 | CDS | 70924287 | 70924445 | 70924287 | ID=cds.MS.gene76728.t1;Parent=MS.gene76728.t1 |
| Gene Sequence |
| Protein sequence |
