Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003462.t1 | XP_003607217.2 | 98.2 | 989 | 18 | 0 | 1 | 989 | 1 | 989 | 0.00E+00 | 1937.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003462.t1 | P36428 | 76.8 | 957 | 217 | 3 | 38 | 989 | 47 | 1003 | 0.0e+00 | 1499.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003462.t1 | A0A396IBC8 | 98.2 | 989 | 18 | 0 | 1 | 989 | 1 | 989 | 0.0e+00 | 1937.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063074 | MS.gene003462 | PPI |
| MS.gene003462 | MS.gene68122 | PPI |
| MS.gene003462 | MS.gene68723 | PPI |
| MS.gene003462 | MS.gene014188 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003462.t1 | MTR_4g074640 | 98.421 | 950 | 15 | 0 | 40 | 989 | 1 | 950 | 0.0 | 1933 |
| MS.gene003462.t1 | MTR_4g074670 | 85.745 | 463 | 66 | 0 | 40 | 502 | 1 | 463 | 0.0 | 857 |
| MS.gene003462.t1 | MTR_4g074670 | 81.579 | 190 | 35 | 0 | 799 | 988 | 445 | 634 | 1.44e-79 | 272 |
| MS.gene003462.t1 | MTR_4g074670 | 83.630 | 281 | 46 | 0 | 222 | 502 | 1 | 281 | 1.53e-167 | 498 |
| MS.gene003462.t1 | MTR_4g074670 | 81.579 | 190 | 35 | 0 | 799 | 988 | 263 | 452 | 4.93e-82 | 273 |
| MS.gene003462.t1 | MTR_3g118360 | 34.593 | 847 | 458 | 20 | 55 | 866 | 86 | 871 | 5.94e-134 | 425 |
| MS.gene003462.t1 | MTR_3g118360 | 34.940 | 830 | 444 | 20 | 55 | 849 | 86 | 854 | 2.33e-133 | 423 |
| MS.gene003462.t1 | MTR_3g118360 | 34.940 | 830 | 444 | 20 | 55 | 849 | 86 | 854 | 7.56e-133 | 425 |
| MS.gene003462.t1 | MTR_3g118360 | 32.633 | 619 | 341 | 15 | 264 | 849 | 1 | 576 | 2.22e-72 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003462.t1 | AT1G50200 | 76.803 | 957 | 217 | 3 | 38 | 989 | 47 | 1003 | 0.0 | 1493 |
| MS.gene003462.t1 | AT1G50200 | 76.166 | 965 | 217 | 4 | 38 | 989 | 47 | 1011 | 0.0 | 1487 |
| MS.gene003462.t1 | AT5G22800 | 35.913 | 827 | 430 | 22 | 55 | 838 | 108 | 877 | 2.21e-138 | 441 |
| MS.gene003462.t1 | AT5G22800 | 33.652 | 942 | 497 | 26 | 55 | 955 | 83 | 937 | 2.41e-138 | 440 |
Find 239 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATTTATGCCACATATTT+TGG | 0.088781 | 4.2:-34079265 | MS.gene003462:CDS |
| GTTCATAACGTTCAAGTTTA+TGG | 0.109288 | 4.2:-34072071 | MS.gene003462:CDS |
| CCTGGACGCGTTCTTCCTTT+TGG | 0.197824 | 4.2:-34079175 | MS.gene003462:CDS |
| GAAGAACGATAGATCCTTTC+TGG | 0.214827 | 4.2:+34071548 | None:intergenic |
| ACTGGTGCTCGGCCATATTC+TGG | 0.216626 | 4.2:-34076887 | MS.gene003462:CDS |
| CACCAGCTCGAATGCACTTT+TGG | 0.230089 | 4.2:+34080096 | None:intergenic |
| ATATCTCTAGCCTCAGTATC+AGG | 0.242247 | 4.2:+34079217 | None:intergenic |
| ATTTCAAATTTGCTTGGTTC+AGG | 0.247448 | 4.2:-34074141 | MS.gene003462:CDS |
| AACAGCTGTTGGACATGTTC+AGG | 0.275058 | 4.2:-34075745 | MS.gene003462:CDS |
| GGTCCAACTTTCCCAGAATA+TGG | 0.280236 | 4.2:+34076875 | None:intergenic |
| ATGGAACCTCGTCTTTATTC+AGG | 0.291356 | 4.2:-34078368 | MS.gene003462:intron |
| CAACCGGGATGCTGCATCTT+TGG | 0.297241 | 4.2:-34078422 | MS.gene003462:CDS |
| ATCAAGAACTGCTCAAAATA+AGG | 0.306307 | 4.2:-34074366 | MS.gene003462:intron |
| AGTTTGCTCAAGGCGGTATT+GGG | 0.311900 | 4.2:+34080137 | None:intergenic |
| TGAGCAAATTCAAGCTGAAT+TGG | 0.318288 | 4.2:-34071369 | MS.gene003462:CDS |
| CCAGTGTCAACATGCTTTGC+AGG | 0.319269 | 4.2:+34078046 | None:intergenic |
| ATGTATGATTAGGGGCTATA+AGG | 0.328822 | 4.2:+34071714 | None:intergenic |
| CCTCTCGTGTGTTTGAGATA+TGG | 0.330074 | 4.2:+34071005 | None:intergenic |
| TCTTTGAGATGTTAGGTAAC+TGG | 0.336497 | 4.2:-34080022 | MS.gene003462:CDS |
| ATCCTACATGCCTCGAGATA+TGG | 0.336552 | 4.2:-34078387 | MS.gene003462:CDS |
| TGGTGATGTTGGTGTAATTC+TGG | 0.341373 | 4.2:-34073548 | MS.gene003462:CDS |
| CTGTTGATGCTGATTCATTA+AGG | 0.342518 | 4.2:-34071412 | MS.gene003462:CDS |
| GACCAAGATTGCCCTACTTC+AGG | 0.355901 | 4.2:-34069629 | MS.gene003462:intron |
| TTGTCTCACCACAGTTCAAC+AGG | 0.362280 | 4.2:-34078096 | MS.gene003462:intron |
| GGCGGAGGAGACGGCGGAGG+TGG | 0.364467 | 4.2:+34080834 | None:intergenic |
| CTGTCATTTGCCATTGCTGA+TGG | 0.364745 | 4.2:-34076794 | MS.gene003462:CDS |
| AAGAGAAGAATCATGTATAC+TGG | 0.368267 | 4.2:-34080738 | MS.gene003462:CDS |
| TGCTTCTGATGCAATGAAAA+TGG | 0.378251 | 4.2:-34070906 | MS.gene003462:CDS |
| TCGTGCTTCACATTGGTAAT+GGG | 0.382910 | 4.2:-34072043 | MS.gene003462:CDS |
| CACACCTTCTTTGAGATGTT+AGG | 0.392733 | 4.2:-34080029 | MS.gene003462:CDS |
| AGAATGGCTGAGTAATGCTT+TGG | 0.394510 | 4.2:-34069019 | MS.gene003462:CDS |
| GAATGGCTGAGTAATGCTTT+GGG | 0.404215 | 4.2:-34069018 | MS.gene003462:CDS |
| CCAACTGACACAACTCTAAC+CGG | 0.410379 | 4.2:+34071189 | None:intergenic |
| TGCATATCTCACGTTAATGT+TGG | 0.411098 | 4.2:-34069360 | MS.gene003462:CDS |
| AACAACAGGAAGTGCACATT+AGG | 0.411109 | 4.2:-34075956 | MS.gene003462:CDS |
| TACCTGAAGTAGGGCAATCT+TGG | 0.411861 | 4.2:+34069627 | None:intergenic |
| CAAGAGGAAGAGGAAAGTTT+CGG | 0.412951 | 4.2:-34075924 | MS.gene003462:CDS |
| GAGTTTGCTCAAGGCGGTAT+TGG | 0.413067 | 4.2:+34080136 | None:intergenic |
| TTCGTGCTTCACATTGGTAA+TGG | 0.413069 | 4.2:-34072044 | MS.gene003462:CDS |
| CTCTCGTGTGTTTGAGATAT+GGG | 0.417253 | 4.2:+34071006 | None:intergenic |
| ATGTGTGTGCATGTATGATT+AGG | 0.419119 | 4.2:+34071704 | None:intergenic |
| GCAAAATTTAAAACAGCTGT+TGG | 0.419267 | 4.2:-34075756 | MS.gene003462:CDS |
| CTATGCTGAGCAAGGTGGTC+AGG | 0.422720 | 4.2:-34073512 | MS.gene003462:intron |
| ATAGGTAGCGTTTGAGTTGT+GGG | 0.425984 | 4.2:-34074582 | MS.gene003462:intron |
| TGTATGATTAGGGGCTATAA+GGG | 0.429923 | 4.2:+34071715 | None:intergenic |
| TTTGAGTTGTGGGATACATA+TGG | 0.434986 | 4.2:-34074572 | MS.gene003462:CDS |
| CTTAATGAATCAGCATCAAC+AGG | 0.436466 | 4.2:+34071413 | None:intergenic |
| ATTTCAGCTTTCTTAGCTGC+AGG | 0.437519 | 4.2:+34069655 | None:intergenic |
| TCAAAGAAGAAGCCATTAGC+TGG | 0.439122 | 4.2:-34079983 | MS.gene003462:CDS |
| GATGAAGCGGCTAAGCTAGA+AGG | 0.439209 | 4.2:-34070860 | MS.gene003462:CDS |
| TTTCGGCAGAACCTTAGTTA+AGG | 0.441839 | 4.2:-34075907 | MS.gene003462:intron |
| ATTGAAGGGGACGACGGGAC+TGG | 0.442727 | 4.2:+34080711 | None:intergenic |
| GACACAACTCTAACCGGATC+AGG | 0.445491 | 4.2:+34071195 | None:intergenic |
| ATACTGAGGCTAGAGATATA+TGG | 0.447714 | 4.2:-34079213 | MS.gene003462:CDS |
| ATAAAATTGACATGGCATAC+AGG | 0.448571 | 4.2:-34076841 | MS.gene003462:CDS |
| ATGTTAGGTAACTGGTCCTT+TGG | 0.450932 | 4.2:-34080014 | MS.gene003462:CDS |
| TAACTCCCATGCCCAGCTAA+TGG | 0.454328 | 4.2:+34079971 | None:intergenic |
| CATCATATAATACCTGAAGT+AGG | 0.455474 | 4.2:+34069617 | None:intergenic |
| GCCGTCTCCTCCGCCATGAC+AGG | 0.455538 | 4.2:-34080826 | MS.gene003462:CDS |
| TCCTGTCATGGCGGAGGAGA+CGG | 0.457461 | 4.2:+34080825 | None:intergenic |
| TTCACCTGTGTGAGGTCCAA+TGG | 0.463460 | 4.2:+34074545 | None:intergenic |
| AGAAGGAAGTTTGCTGGAAG+AGG | 0.463523 | 4.2:-34070843 | MS.gene003462:intron |
| GAGGAGAGTAGGGTCATTGA+AGG | 0.463658 | 4.2:+34080696 | None:intergenic |
| TATACTCTAGTTCAATTTCA+CGG | 0.465167 | 4.2:+34068088 | None:intergenic |
| GTCAACATGCTTTGCAGGCA+GGG | 0.466153 | 4.2:+34078051 | None:intergenic |
| GAATGTGATTCAAGAGGAAG+AGG | 0.466985 | 4.2:-34075934 | MS.gene003462:CDS |
| CTGGTGCTCGGCCATATTCT+GGG | 0.468254 | 4.2:-34076886 | MS.gene003462:CDS |
| ATGATAATTTCAAATTTGCT+TGG | 0.470436 | 4.2:-34074147 | MS.gene003462:CDS |
| GTGCCGGAGAAAGGAGATAA+AGG | 0.472153 | 4.2:-34069057 | MS.gene003462:CDS |
| GGAAAAGGAGGTCTTGCAAC+GGG | 0.472528 | 4.2:-34068970 | MS.gene003462:CDS |
| TTTCAAATTTGCTTGGTTCA+GGG | 0.472762 | 4.2:-34074140 | MS.gene003462:intron |
| GGGAGATGTGGTAAAGGAAA+AGG | 0.476017 | 4.2:-34068985 | MS.gene003462:CDS |
| TGCCGATGCCAAGCGTATCA+AGG | 0.478205 | 4.2:-34071321 | MS.gene003462:CDS |
| CGGCCATATTCTGGGAAAGT+TGG | 0.482423 | 4.2:-34076878 | MS.gene003462:CDS |
| TTTCCCCGAGCTAAAACAAC+AGG | 0.483670 | 4.2:-34075970 | MS.gene003462:CDS |
| GCATATCTCACGTTAATGTT+GGG | 0.483698 | 4.2:-34069359 | MS.gene003462:CDS |
| AATTTGAAATTATCATCTGT+TGG | 0.486165 | 4.2:+34074154 | None:intergenic |
| AATGTAGGTCTATCCTGATC+CGG | 0.487244 | 4.2:-34071208 | MS.gene003462:intron |
| ATGCTTTGGGGCCACTGAAA+GGG | 0.487479 | 4.2:-34069005 | MS.gene003462:CDS |
| AAATGTTGTGGCAAATGTGC+TGG | 0.487583 | 4.2:-34076000 | MS.gene003462:CDS |
| TGTCAACATGCTTTGCAGGC+AGG | 0.488357 | 4.2:+34078050 | None:intergenic |
| TAAGCTAGAAGGAAGTTTGC+TGG | 0.488518 | 4.2:-34070849 | MS.gene003462:CDS |
| TGTGTGTGCATGTATGATTA+GGG | 0.489098 | 4.2:+34071705 | None:intergenic |
| TATAGGTAGCGTTTGAGTTG+TGG | 0.493113 | 4.2:-34074583 | MS.gene003462:intron |
| TGTAGTGTGTGCTGGGGTGC+CGG | 0.494475 | 4.2:-34069073 | MS.gene003462:CDS |
| TTACCTTTATCTCCTTTCTC+CGG | 0.495540 | 4.2:+34069054 | None:intergenic |
| AAACATACTTTACATCCAAA+AGG | 0.496267 | 4.2:+34079160 | None:intergenic |
| TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 4.2:+34070936 | None:intergenic |
| CAACTTCCTCTGCAGTATAG+AGG | 0.498143 | 4.2:+34078003 | None:intergenic |
| TGTCATTTGCCATTGCTGAT+GGG | 0.498811 | 4.2:-34076793 | MS.gene003462:CDS |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 4.2:-34070962 | MS.gene003462:CDS |
| ATTGCTGATGGGTCTCGTCC+TGG | 0.500105 | 4.2:-34076782 | MS.gene003462:intron |
| AGCTGAATAGCATCGAAGAT+AGG | 0.503102 | 4.2:+34077953 | None:intergenic |
| TGACGAATGCAGGAAGTACT+TGG | 0.505300 | 4.2:-34071583 | MS.gene003462:intron |
| TGTAACACATAACAGGCAAC+TGG | 0.505452 | 4.2:-34076905 | MS.gene003462:intron |
| CATGGCGGAGGAGACGGCGG+AGG | 0.507042 | 4.2:+34080831 | None:intergenic |
| GTATACTCCGTCGAGCTGTT+CGG | 0.508490 | 4.2:-34076333 | MS.gene003462:CDS |
| GCGTTGGCGAAGAGGAGAGT+AGG | 0.508909 | 4.2:+34080685 | None:intergenic |
| GGGTTGTTGCAGATCACATC+AGG | 0.509762 | 4.2:-34076820 | MS.gene003462:CDS |
| GTCGAGCTGTTCGGTATGGT+CGG | 0.509843 | 4.2:-34076324 | MS.gene003462:CDS |
| TCACCTGTGTGAGGTCCAAT+GGG | 0.511378 | 4.2:+34074546 | None:intergenic |
| GTATGGTCGGGAAGTGCTAA+AGG | 0.513822 | 4.2:-34076311 | MS.gene003462:CDS |
| TGTGCTGGGGTGCCGGAGAA+AGG | 0.514670 | 4.2:-34069066 | MS.gene003462:CDS |
| TGTTACTATCAGCAAGCTGG+TGG | 0.517907 | 4.2:-34074232 | MS.gene003462:intron |
| GAGAGAGAAGCTACCGGCGT+TGG | 0.518104 | 4.2:+34080669 | None:intergenic |
| AACAAAGCTGTAGTGTGTGC+TGG | 0.518252 | 4.2:-34069081 | MS.gene003462:CDS |
| GGGTCATTGAAGGGGACGAC+GGG | 0.518747 | 4.2:+34080706 | None:intergenic |
| GTGGTAAAAGCAATATATAC+TGG | 0.521169 | 4.2:-34073601 | MS.gene003462:CDS |
| AGGAGGTCTTGCAACGGGAC+AGG | 0.521507 | 4.2:-34068965 | MS.gene003462:intron |
| ACAGCTGTTGGACATGTTCA+GGG | 0.521612 | 4.2:-34075744 | MS.gene003462:CDS |
| CTCCGTCGAGCTGTTCGGTA+TGG | 0.522500 | 4.2:-34076328 | MS.gene003462:CDS |
| GTCTATCCTGACCTTAACTA+AGG | 0.523455 | 4.2:+34075896 | None:intergenic |
| GTATCTCTGACGCGCTTCGC+CGG | 0.526015 | 4.2:+34080778 | None:intergenic |
| GAAAGGAGATAAAGGTAAGC+TGG | 0.527245 | 4.2:-34069049 | MS.gene003462:CDS |
| ACCCTTGATACGCTTGGCAT+CGG | 0.527787 | 4.2:+34071319 | None:intergenic |
| CCGGTTAGAGTTGTGTCAGT+TGG | 0.528364 | 4.2:-34071189 | MS.gene003462:CDS |
| TACAAAAGTCATTGATCAGA+AGG | 0.530377 | 4.2:-34069307 | MS.gene003462:intron |
| TTCTTTGAAGTAATCGCCAA+AGG | 0.530535 | 4.2:+34079998 | None:intergenic |
| AATGCTTTGGGGCCACTGAA+AGG | 0.530573 | 4.2:-34069006 | MS.gene003462:CDS |
| AAGAAGCCATTAGCTGGGCA+TGG | 0.530759 | 4.2:-34079977 | MS.gene003462:CDS |
| ATCATATAATACCTGAAGTA+GGG | 0.532869 | 4.2:+34069618 | None:intergenic |
| CCTGCAAAGCATGTTGACAC+TGG | 0.534391 | 4.2:-34078046 | MS.gene003462:CDS |
| TCGAGCTGTTCGGTATGGTC+GGG | 0.534669 | 4.2:-34076323 | MS.gene003462:CDS |
| CCAAAAGGAAGAACGCGTCC+AGG | 0.534992 | 4.2:+34079175 | None:intergenic |
| GCTGATCTAGCTGTTTCAGA+TGG | 0.536347 | 4.2:-34069393 | MS.gene003462:CDS |
| TATCTCTAGCCTCAGTATCA+GGG | 0.541007 | 4.2:+34079218 | None:intergenic |
| GTTAATACTGATGGTGATGT+TGG | 0.542418 | 4.2:-34073559 | MS.gene003462:CDS |
| TATCTTCGATGCTATTCAGC+TGG | 0.542663 | 4.2:-34077951 | MS.gene003462:intron |
| GAACTTGAAATGAAGCATGT+TGG | 0.543494 | 4.2:+34072090 | None:intergenic |
| GTTGATTCAGTTAATACTGA+TGG | 0.545376 | 4.2:-34073568 | MS.gene003462:CDS |
| AGGAGAGTAGGGTCATTGAA+GGG | 0.545848 | 4.2:+34080697 | None:intergenic |
| AGCTACCGGCGTTGGCGAAG+AGG | 0.546190 | 4.2:+34080677 | None:intergenic |
| AAGCATGTTGACACTGGAAT+GGG | 0.546666 | 4.2:-34078040 | MS.gene003462:CDS |
| AGAGGGTTGTGAATGACAAG+AGG | 0.548129 | 4.2:-34080940 | None:intergenic |
| ACAAAGCTGTAGTGTGTGCT+GGG | 0.548423 | 4.2:-34069080 | MS.gene003462:CDS |
| TCGCAGACCCTTGATACGCT+TGG | 0.548676 | 4.2:+34071313 | None:intergenic |
| ACCCAAAAGTGCATTCGAGC+TGG | 0.549128 | 4.2:-34080098 | MS.gene003462:CDS |
| TTACCACATCTCCCTTTCAG+TGG | 0.549551 | 4.2:+34068994 | None:intergenic |
| CTCATCACCACCAAAATATG+TGG | 0.551078 | 4.2:+34079255 | None:intergenic |
| TCAAAATGAATTTCTGTGCA+AGG | 0.551129 | 4.2:+34078454 | None:intergenic |
| CTTCACATTGGTAATGGGAC+TGG | 0.552145 | 4.2:-34072038 | MS.gene003462:CDS |
| CTGATCTAGCTGTTTCAGAT+GGG | 0.557727 | 4.2:-34069392 | MS.gene003462:CDS |
| CTGAAAGGGAGATGTGGTAA+AGG | 0.558294 | 4.2:-34068991 | MS.gene003462:CDS |
| GTTACCTAACATCTCAAAGA+AGG | 0.560082 | 4.2:+34080025 | None:intergenic |
| GGATACATATGGCTTCCCAT+TGG | 0.561612 | 4.2:-34074561 | MS.gene003462:CDS |
| TTCAGGGAAACATACTGAGT+GGG | 0.561646 | 4.2:-34075728 | MS.gene003462:CDS |
| AATGGGACTGGTATCTCTGT+TGG | 0.562252 | 4.2:-34072026 | MS.gene003462:CDS |
| GTGGCATAAATGCGATCTGA+AGG | 0.564396 | 4.2:+34079274 | None:intergenic |
| ATGGGTGACACTGGTCCTTG+TGG | 0.566112 | 4.2:-34078478 | MS.gene003462:CDS |
| TGGCCTTGCCCCTGATACTG+AGG | 0.566728 | 4.2:-34079227 | MS.gene003462:CDS |
| TGTAACGTTAACAGCTGAGA+AGG | 0.569754 | 4.2:-34069415 | MS.gene003462:CDS |
| GCCGATGCCAAGCGTATCAA+GGG | 0.570608 | 4.2:-34071320 | MS.gene003462:CDS |
| ACTCTCCTCTTCGCCAACGC+CGG | 0.576230 | 4.2:-34080682 | MS.gene003462:intron |
| CATAACAGGCAACTGGTGCT+CGG | 0.576350 | 4.2:-34076898 | MS.gene003462:intron |
| TAAAATTGACATGGCATACA+GGG | 0.577632 | 4.2:-34076840 | MS.gene003462:CDS |
| AAATTACATGTCGATGTCGA+AGG | 0.578758 | 4.2:-34074422 | MS.gene003462:CDS |
| GGAAGTGCTAAAGGCTGAAG+AGG | 0.579775 | 4.2:-34076302 | MS.gene003462:CDS |
| ATCAGTTCCTGTCATGGCGG+AGG | 0.579820 | 4.2:+34080819 | None:intergenic |
| TCTATTTCATCTGAATTGTG+TGG | 0.581871 | 4.2:-34071117 | MS.gene003462:CDS |
| AGAAGCCATTAGCTGGGCAT+GGG | 0.582659 | 4.2:-34079976 | MS.gene003462:CDS |
| CTCACACGTAAATGAGGCTA+TGG | 0.583114 | 4.2:-34068132 | MS.gene003462:CDS |
| AGATGCCTCACACGTAAATG+AGG | 0.584387 | 4.2:-34068138 | MS.gene003462:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.585842 | 4.2:-34071354 | MS.gene003462:CDS |
| TACACTCGATATCGAGTGGC+CGG | 0.585939 | 4.2:-34080797 | MS.gene003462:CDS |
| ACATCTCAAAGAAGGTGTGA+TGG | 0.587964 | 4.2:+34080033 | None:intergenic |
| GAGTGTATCAGTTCCTGTCA+TGG | 0.589194 | 4.2:+34080813 | None:intergenic |
| AGCTGGTGGTGCTATTGTCA+TGG | 0.590439 | 4.2:-34074218 | MS.gene003462:CDS |
| CATAACGTTCAAGTTTATGG+AGG | 0.590521 | 4.2:-34072068 | MS.gene003462:CDS |
| AGATGTGGTAAAGGAAAAGG+AGG | 0.595385 | 4.2:-34068982 | MS.gene003462:CDS |
| GGCAATCATGTAGACCAGAA+AGG | 0.595519 | 4.2:-34071562 | MS.gene003462:CDS |
| AAAGCATGTTGACACTGGAA+TGG | 0.597758 | 4.2:-34078041 | MS.gene003462:CDS |
| AGCACGGGAGAGTTTGCTCA+AGG | 0.598627 | 4.2:+34080127 | None:intergenic |
| GAGATACCGTGAGAGGGTGG+CGG | 0.599144 | 4.2:+34080871 | None:intergenic |
| TAGCCTCAGTATCAGGGGCA+AGG | 0.601926 | 4.2:+34079224 | None:intergenic |
| CGATGTTGCAGCAGTTCGTG+AGG | 0.602573 | 4.2:-34069334 | MS.gene003462:CDS |
| TTCATCTTTGAAAAGCAATG+TGG | 0.602709 | 4.2:-34069692 | MS.gene003462:CDS |
| TAACCAAAGATGCAGCATCC+CGG | 0.603690 | 4.2:+34078419 | None:intergenic |
| AATGGCTGAGTAATGCTTTG+GGG | 0.604194 | 4.2:-34069017 | MS.gene003462:CDS |
| CAAAGAAGAAGCCATTAGCT+GGG | 0.605025 | 4.2:-34079982 | MS.gene003462:CDS |
| CAAAAGTGCATTCGAGCTGG+TGG | 0.606727 | 4.2:-34080095 | MS.gene003462:CDS |
| ATCTCTAGCCTCAGTATCAG+GGG | 0.608234 | 4.2:+34079219 | None:intergenic |
| TTTCGTTATCAGGGTCAGCA+AGG | 0.608732 | 4.2:+34071148 | None:intergenic |
| GGAGAGTAGGGTCATTGAAG+GGG | 0.610058 | 4.2:+34080698 | None:intergenic |
| AGGGTCATTGAAGGGGACGA+CGG | 0.610203 | 4.2:+34080705 | None:intergenic |
| CGTTGGCGAAGAGGAGAGTA+GGG | 0.610687 | 4.2:+34080686 | None:intergenic |
| CACAATGATCTTGACGACGT+GGG | 0.612293 | 4.2:-34080068 | MS.gene003462:CDS |
| TGAGAAGCAAGTAGATGAAG+CGG | 0.615185 | 4.2:-34070873 | MS.gene003462:CDS |
| TAAACAGGGATTGTCAGTGA+TGG | 0.616674 | 4.2:-34069127 | MS.gene003462:intron |
| TTAGCGCCGCCACCCTCTCA+CGG | 0.618261 | 4.2:-34080877 | MS.gene003462:CDS |
| GGAGGTTTCGTGCTTCACAT+TGG | 0.619470 | 4.2:-34072050 | MS.gene003462:CDS |
| TTTGGTGGTGATGAGAAAGC+TGG | 0.620486 | 4.2:-34079247 | MS.gene003462:CDS |
| AATGTTGTGGCAAATGTGCT+GGG | 0.621430 | 4.2:-34075999 | MS.gene003462:CDS |
| ACAAGCTTCTATGCTGAGCA+AGG | 0.625524 | 4.2:-34073520 | MS.gene003462:CDS |
| ATTTCTGTGCAAGGTCCACA+AGG | 0.625777 | 4.2:+34078463 | None:intergenic |
| AGGACGAGACCCATCAGCAA+TGG | 0.627510 | 4.2:+34076784 | None:intergenic |
| CATAGCCTCATTTACGTGTG+AGG | 0.628945 | 4.2:+34068133 | None:intergenic |
| GTCTTAGGACCATGAGAGTG+TGG | 0.631834 | 4.2:-34073620 | MS.gene003462:intron |
| ATTGGATGTAAATGCAAAGG+AGG | 0.632135 | 4.2:-34071351 | MS.gene003462:CDS |
| ACAATGATCTTGACGACGTG+GGG | 0.633719 | 4.2:-34080067 | MS.gene003462:CDS |
| GACCATACCGAACAGCTCGA+CGG | 0.633901 | 4.2:+34076326 | None:intergenic |
| TTCCATATCTCGAGGCATGT+AGG | 0.636693 | 4.2:+34078385 | None:intergenic |
| TGTCATGGCGGAGGAGACGG+CGG | 0.638181 | 4.2:+34080828 | None:intergenic |
| CTCGAGATACCGTGAGAGGG+TGG | 0.639179 | 4.2:+34080868 | None:intergenic |
| CATTAGGAATGTGATTCAAG+AGG | 0.642500 | 4.2:-34075940 | MS.gene003462:CDS |
| GTTTGCTCAAGGCGGTATTG+GGG | 0.644495 | 4.2:+34080138 | None:intergenic |
| CTTCCCATTGGACCTCACAC+AGG | 0.645170 | 4.2:-34074549 | MS.gene003462:intron |
| GTAAGCTGGATGTATCAGAA+TGG | 0.647412 | 4.2:-34069035 | MS.gene003462:CDS |
| ATGTTGGAAATCAAGAGACC+CGG | 0.647630 | 4.2:+34072106 | None:intergenic |
| CAGTTCAACAGGGAGGCTGA+CGG | 0.650951 | 4.2:-34078085 | MS.gene003462:CDS |
| TGGCGACAAAGTAGTATGCA+AGG | 0.651339 | 4.2:-34072006 | MS.gene003462:intron |
| GAAGTGCTAAAGGCTGAAGA+GGG | 0.651588 | 4.2:-34076301 | MS.gene003462:CDS |
| AGATCTCGAGATACCGTGAG+AGG | 0.654707 | 4.2:+34080864 | None:intergenic |
| GATCTCGAGATACCGTGAGA+GGG | 0.655018 | 4.2:+34080865 | None:intergenic |
| GGGCCACTGAAAGGGAGATG+TGG | 0.655092 | 4.2:-34068997 | MS.gene003462:CDS |
| GACTGACCTCTATACTGCAG+AGG | 0.655134 | 4.2:-34078009 | MS.gene003462:CDS |
| GCACAATGATCTTGACGACG+TGG | 0.658642 | 4.2:-34080069 | MS.gene003462:CDS |
| ATTTCATCTGAATTGTGTGG+TGG | 0.658972 | 4.2:-34071114 | MS.gene003462:intron |
| CTCTTCGAAGAACTTGACGA+AGG | 0.661427 | 4.2:+34080756 | None:intergenic |
| AATCAGGCTTGTAAATGTTG+TGG | 0.668615 | 4.2:-34076012 | MS.gene003462:intron |
| AGACGAGGTTCCATATCTCG+AGG | 0.669081 | 4.2:+34078377 | None:intergenic |
| AGGAAAAGGAGGTCTTGCAA+CGG | 0.669184 | 4.2:-34068971 | MS.gene003462:CDS |
| TGTCTCACCACAGTTCAACA+GGG | 0.670149 | 4.2:-34078095 | MS.gene003462:intron |
| GCGGCGCTAATAGAGTGTTA+CGG | 0.670388 | 4.2:+34080890 | None:intergenic |
| AGATGCTGATAAAATTGACA+TGG | 0.670809 | 4.2:-34076849 | MS.gene003462:CDS |
| AAAGGAAGAACGCGTCCAGG+AGG | 0.675704 | 4.2:+34079178 | None:intergenic |
| TCAGGGAAACATACTGAGTG+GGG | 0.678837 | 4.2:-34075727 | MS.gene003462:CDS |
| GGGAAACATACTGAGTGGGG+AGG | 0.679009 | 4.2:-34075724 | MS.gene003462:intron |
| CTGATACACTCGATATCGAG+TGG | 0.683989 | 4.2:-34080801 | MS.gene003462:CDS |
| AGAACAACTTCACCTGTGTG+AGG | 0.685827 | 4.2:+34074537 | None:intergenic |
| GTTCAGGGAAACATACTGAG+TGG | 0.687325 | 4.2:-34075729 | MS.gene003462:CDS |
| CCATATCTCAAACACACGAG+AGG | 0.696552 | 4.2:-34071005 | MS.gene003462:CDS |
| AGCTTCTATGCTGAGCAAGG+TGG | 0.702055 | 4.2:-34073517 | MS.gene003462:CDS |
| GTGTGTGCATGTATGATTAG+GGG | 0.702667 | 4.2:+34071706 | None:intergenic |
| AAGGTCGTGAGTATGTTCTG+AGG | 0.708774 | 4.2:-34076357 | MS.gene003462:CDS |
| ACGGGAGAGTTTGCTCAAGG+CGG | 0.709960 | 4.2:+34080130 | None:intergenic |
| TGTATCAGTTCCTGTCATGG+CGG | 0.715205 | 4.2:+34080816 | None:intergenic |
| CAAAGCTGTAGTGTGTGCTG+GGG | 0.725318 | 4.2:-34069079 | MS.gene003462:CDS |
| AAAATACCTGAATAAAGACG+AGG | 0.734207 | 4.2:+34078362 | None:intergenic |
| CTCACCACAGTTCAACAGGG+AGG | 0.740280 | 4.2:-34078092 | MS.gene003462:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34068094 | 34080950 | 34068094 | ID=MS.gene003462 |
| chr4.2 | mRNA | 34068094 | 34080950 | 34068094 | ID=MS.gene003462.t1;Parent=MS.gene003462 |
| chr4.2 | exon | 34080683 | 34080950 | 34080683 | ID=MS.gene003462.t1.exon1;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34080683 | 34080950 | 34080683 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34079962 | 34080200 | 34079962 | ID=MS.gene003462.t1.exon2;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34079962 | 34080200 | 34079962 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34079168 | 34079308 | 34079168 | ID=MS.gene003462.t1.exon3;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34079168 | 34079308 | 34079168 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34078369 | 34078515 | 34078369 | ID=MS.gene003462.t1.exon4;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34078369 | 34078515 | 34078369 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34077952 | 34078104 | 34077952 | ID=MS.gene003462.t1.exon5;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34077952 | 34078104 | 34077952 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34076783 | 34076912 | 34076783 | ID=MS.gene003462.t1.exon6;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34076783 | 34076912 | 34076783 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34076289 | 34076385 | 34076289 | ID=MS.gene003462.t1.exon7;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34076289 | 34076385 | 34076289 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34075908 | 34076028 | 34075908 | ID=MS.gene003462.t1.exon8;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34075908 | 34076028 | 34075908 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34075725 | 34075784 | 34075725 | ID=MS.gene003462.t1.exon9;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34075725 | 34075784 | 34075725 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34074550 | 34074600 | 34074550 | ID=MS.gene003462.t1.exon10;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34074550 | 34074600 | 34074550 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34074367 | 34074462 | 34074367 | ID=MS.gene003462.t1.exon11;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34074367 | 34074462 | 34074367 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34074141 | 34074242 | 34074141 | ID=MS.gene003462.t1.exon12;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34074141 | 34074242 | 34074141 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34073513 | 34073635 | 34073513 | ID=MS.gene003462.t1.exon13;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34073513 | 34073635 | 34073513 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34072007 | 34072138 | 34072007 | ID=MS.gene003462.t1.exon14;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34072007 | 34072138 | 34072007 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34071685 | 34071756 | 34071685 | ID=MS.gene003462.t1.exon15;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34071685 | 34071756 | 34071685 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34071518 | 34071593 | 34071518 | ID=MS.gene003462.t1.exon16;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34071518 | 34071593 | 34071518 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34071298 | 34071440 | 34071298 | ID=MS.gene003462.t1.exon17;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34071298 | 34071440 | 34071298 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34071115 | 34071223 | 34071115 | ID=MS.gene003462.t1.exon18;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34071115 | 34071223 | 34071115 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34070844 | 34071031 | 34070844 | ID=MS.gene003462.t1.exon19;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34070844 | 34071031 | 34070844 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34069630 | 34069719 | 34069630 | ID=MS.gene003462.t1.exon20;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34069630 | 34069719 | 34069630 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34069308 | 34069490 | 34069308 | ID=MS.gene003462.t1.exon21;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34069308 | 34069490 | 34069308 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34068966 | 34069142 | 34068966 | ID=MS.gene003462.t1.exon22;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34068966 | 34069142 | 34068966 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| chr4.2 | exon | 34068094 | 34068165 | 34068094 | ID=MS.gene003462.t1.exon23;Parent=MS.gene003462.t1 |
| chr4.2 | CDS | 34068094 | 34068165 | 34068094 | ID=cds.MS.gene003462.t1;Parent=MS.gene003462.t1 |
| Gene Sequence |
| Protein sequence |
