Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004142.t1 | AIY27528.1 | 100 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 8.20E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004142.t1 | P48534 | 95.2 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 2.1e-137 | 489.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004142.t1 | A0A0H3UW77 | 100.0 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 5.9e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004142 | MS.gene37417 | PPI |
| MS.gene004142 | MS.gene066508 | PPI |
| MS.gene004142 | MS.gene015008 | PPI |
| MS.gene004142 | MS.gene32806 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004142.t1 | MTR_4g061140 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
| MS.gene004142.t1 | MTR_4g061140 | 99.187 | 246 | 2 | 0 | 1 | 246 | 1 | 246 | 0.0 | 498 |
| MS.gene004142.t1 | MTR_4g061140 | 96.296 | 216 | 8 | 0 | 35 | 250 | 1 | 216 | 1.43e-153 | 426 |
| MS.gene004142.t1 | MTR_5g022510 | 64.167 | 240 | 85 | 1 | 8 | 247 | 6 | 244 | 8.95e-114 | 328 |
| MS.gene004142.t1 | MTR_4g073410 | 63.223 | 242 | 88 | 1 | 7 | 248 | 6 | 246 | 7.53e-110 | 318 |
| MS.gene004142.t1 | MTR_5g022510 | 64.251 | 207 | 73 | 1 | 41 | 247 | 14 | 219 | 1.45e-96 | 283 |
| MS.gene004142.t1 | MTR_5g008440 | 81.437 | 167 | 17 | 1 | 80 | 246 | 29 | 181 | 3.40e-91 | 267 |
| MS.gene004142.t1 | MTR_3g088160 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 6.60e-68 | 214 |
| MS.gene004142.t1 | MTR_3g088160 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 1.84e-67 | 215 |
| MS.gene004142.t1 | MTR_3g107060 | 39.407 | 236 | 120 | 7 | 20 | 246 | 93 | 314 | 3.72e-40 | 141 |
| MS.gene004142.t1 | MTR_4g122640 | 30.233 | 215 | 106 | 8 | 73 | 248 | 112 | 321 | 6.06e-15 | 73.6 |
| MS.gene004142.t1 | MTR_0155s0040 | 28.986 | 207 | 112 | 7 | 73 | 249 | 100 | 301 | 1.17e-14 | 72.4 |
| MS.gene004142.t1 | MTR_8g087680 | 68.293 | 41 | 13 | 0 | 66 | 106 | 32 | 72 | 1.05e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.29e-155 | 432 |
| MS.gene004142.t1 | AT1G07890 | 80.567 | 247 | 48 | 0 | 1 | 247 | 1 | 247 | 7.87e-154 | 428 |
| MS.gene004142.t1 | AT3G09640 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.05e-149 | 417 |
| MS.gene004142.t1 | AT3G09640 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.05e-149 | 417 |
| MS.gene004142.t1 | AT4G35000 | 66.942 | 242 | 79 | 1 | 6 | 247 | 4 | 244 | 1.34e-116 | 335 |
| MS.gene004142.t1 | AT4G35970 | 60.166 | 241 | 94 | 2 | 7 | 247 | 4 | 242 | 1.99e-100 | 294 |
| MS.gene004142.t1 | AT4G35970 | 59.361 | 219 | 87 | 2 | 7 | 225 | 4 | 220 | 1.74e-89 | 264 |
| MS.gene004142.t1 | AT1G77490 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 9.72e-68 | 215 |
| MS.gene004142.t1 | AT1G77490 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.04e-67 | 215 |
| MS.gene004142.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene004142.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene004142.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.16e-66 | 209 |
| MS.gene004142.t1 | AT4G08390 | 46.484 | 256 | 111 | 6 | 16 | 246 | 106 | 360 | 1.04e-65 | 208 |
| MS.gene004142.t1 | AT4G08390 | 42.969 | 256 | 94 | 8 | 16 | 246 | 107 | 335 | 1.21e-53 | 177 |
| MS.gene004142.t1 | AT4G32320 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 1.36e-38 | 137 |
| MS.gene004142.t1 | AT4G31760 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 2.38e-17 | 80.1 |
| MS.gene004142.t1 | AT3G28200 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 1.78e-14 | 72.0 |
| MS.gene004142.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.21e-13 | 69.7 |
| MS.gene004142.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.27e-13 | 69.3 |
| MS.gene004142.t1 | AT4G33420 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.43e-13 | 69.7 |
| MS.gene004142.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 108 | 327 | 2.27e-13 | 69.3 |
| MS.gene004142.t1 | AT4G09010 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.79e-13 | 68.6 |
Find 84 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4.2:+42998443 | MS.gene004142:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4.2:+42998271 | MS.gene004142:CDS |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4.2:-42997674 | None:intergenic |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4.2:-42998225 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4.2:-42999888 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4.2:+42997734 | MS.gene004142:CDS |
| CAGGACATTGTTGCTCTGTC+TGG | 0.376017 | 4.2:+42999304 | MS.gene004142:CDS |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4.2:+42998200 | MS.gene004142:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4.2:-42999125 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4.2:+42999646 | MS.gene004142:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4.2:+42999851 | MS.gene004142:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4.2:-42998314 | None:intergenic |
| ACGGTCTTGATATCGCTGTT+AGG | 0.422947 | 4.2:+42998264 | MS.gene004142:CDS |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4.2:+42999249 | MS.gene004142:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4.2:+42998161 | MS.gene004142:intron |
| TGAAATGATTAGGGAGTTGT+TGG | 0.432563 | 4.2:+42999809 | MS.gene004142:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4.2:-42999152 | None:intergenic |
| CCGGGGTGGAAAGGAACTTC+AGG | 0.436434 | 4.2:-42998470 | None:intergenic |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4.2:+42999270 | MS.gene004142:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4.2:-42998296 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4.2:+42998188 | MS.gene004142:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4.2:+42999654 | MS.gene004142:CDS |
| GGAGTTGTTGGGTGGTGAGA+AGG | 0.456331 | 4.2:+42999821 | MS.gene004142:CDS |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4.2:+42999248 | MS.gene004142:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4.2:-42999131 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4.2:-42997653 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4.2:-42999137 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4.2:+42999259 | MS.gene004142:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4.2:+43000075 | MS.gene004142:CDS |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4.2:+43000074 | MS.gene004142:CDS |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4.2:-42999861 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4.2:-42997738 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.479033 | 4.2:+42998419 | MS.gene004142:intron |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4.2:-42997749 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4.2:-42999848 | None:intergenic |
| CACCATGAGCAAGCTCAGCT+TGG | 0.497717 | 4.2:-42998235 | None:intergenic |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4.2:+42999271 | MS.gene004142:CDS |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4.2:-42998313 | None:intergenic |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4.2:-42999261 | None:intergenic |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4.2:+42999655 | MS.gene004142:CDS |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4.2:+42998233 | MS.gene004142:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4.2:+42999285 | MS.gene004142:CDS |
| TAGTAAACGTACCTCCCTAC+CGG | 0.522438 | 4.2:-42998489 | None:intergenic |
| AAGTTCCTTTCCACCCCGGT+AGG | 0.526103 | 4.2:+42998474 | MS.gene004142:CDS |
| ATGAGAGGATTAGAAGTCCA+TGG | 0.528007 | 4.2:-42999679 | None:intergenic |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4.2:-42999887 | None:intergenic |
| ACCTCCCTACCGGGGTGGAA+AGG | 0.535670 | 4.2:-42998479 | None:intergenic |
| AGTAAACGTACCTCCCTACC+GGG | 0.538079 | 4.2:-42998488 | None:intergenic |
| GACATTGTTGCTCTGTCTGG+TGG | 0.546009 | 4.2:+42999307 | MS.gene004142:CDS |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4.2:+42997659 | MS.gene004142:CDS |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4.2:-42999159 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4.2:+42999145 | MS.gene004142:CDS |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4.2:-42997654 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4.2:+42999146 | MS.gene004142:CDS |
| AGTTCCTTTCCACCCCGGTA+GGG | 0.567360 | 4.2:+42998475 | MS.gene004142:CDS |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4.2:-42999134 | None:intergenic |
| CACAGGTTTGCAGAAGCCTA+AGG | 0.569562 | 4.2:+43000240 | MS.gene004142:intron |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4.2:-42999900 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4.2:+42997671 | MS.gene004142:CDS |
| TCCTTTCCACCCCGGTAGGG+AGG | 0.587045 | 4.2:+42998478 | MS.gene004142:CDS |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4.2:+42999636 | MS.gene004142:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4.2:+42998446 | MS.gene004142:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4.2:+42998322 | MS.gene004142:CDS |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4.2:+42999121 | MS.gene004142:CDS |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4.2:+42999662 | MS.gene004142:CDS |
| CAGACAGAGCAACAATGTCC+TGG | 0.604472 | 4.2:-42999303 | None:intergenic |
| GAAATGATTAGGGAGTTGTT+GGG | 0.614317 | 4.2:+42999810 | MS.gene004142:intron |
| TGAGAGGATTAGAAGTCCAT+GGG | 0.619251 | 4.2:-42999678 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4.2:+42999122 | MS.gene004142:CDS |
| CCTGAAGTTCCTTTCCACCC+CGG | 0.635685 | 4.2:+42998470 | MS.gene004142:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4.2:+42998191 | MS.gene004142:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4.2:+43000049 | MS.gene004142:CDS |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4.2:-42999899 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4.2:+42997679 | MS.gene004142:CDS |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4.2:+42999272 | MS.gene004142:CDS |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4.2:-42999330 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4.2:+42997690 | MS.gene004142:CDS |
| CTTGCTCATGGTGCTAACAA+CGG | 0.654051 | 4.2:+42998245 | MS.gene004142:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4.2:-42998215 | None:intergenic |
| TTGTTGGGTGGTGAGAAGGA+AGG | 0.658316 | 4.2:+42999825 | MS.gene004142:CDS |
| AACGTACCTCCCTACCGGGG+TGG | 0.660383 | 4.2:-42998484 | None:intergenic |
| ATGATTAGGGAGTTGTTGGG+TGG | 0.662546 | 4.2:+42999813 | MS.gene004142:intron |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4.2:-42999896 | None:intergenic |
| GTAAACGTACCTCCCTACCG+GGG | 0.769408 | 4.2:-42998487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACTCA+AGG | - | chr4.2:42998688-42998707 | None:intergenic | 10.0% |
| !! | CCAAATATAAAAAATAAATA+GGG | - | chr4.2:42999062-42999081 | None:intergenic | 10.0% |
| !! | TATATATTTATTTATCTTCA+AGG | + | chr4.2:43000146-43000165 | MS.gene004142:intron | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | - | chr4.2:42999063-42999082 | None:intergenic | 10.0% |
| !! | TTAAAACACAAAAAAAAATA+GGG | - | chr4.2:42999762-42999781 | None:intergenic | 10.0% |
| !!! | ATTATCTAAGTTTTAAATTA+TGG | + | chr4.2:42999476-42999495 | MS.gene004142:intron | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | + | chr4.2:42999062-42999081 | MS.gene004142:intron | 10.0% |
| !!! | TTTAAAACACAAAAAAAAAT+AGG | - | chr4.2:42999763-42999782 | None:intergenic | 10.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | + | chr4.2:42997960-42997979 | MS.gene004142:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | + | chr4.2:42999412-42999431 | MS.gene004142:intron | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | + | chr4.2:42999059-42999078 | MS.gene004142:intron | 15.0% |
| !! | AGGAATATTAAATCTACATA+CGG | - | chr4.2:42999925-42999944 | None:intergenic | 20.0% |
| !! | ATGCAAATAATATGATGAAA+AGG | - | chr4.2:42999956-42999975 | None:intergenic | 20.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | - | chr4.2:42999097-42999116 | None:intergenic | 20.0% |
| !! | TAAAATTGATTGTAGTTGTT+TGG | + | chr4.2:42999203-42999222 | MS.gene004142:intron | 20.0% |
| !! | TATACTTAATGTAATTGGTA+GGG | + | chr4.2:42999622-42999641 | MS.gene004142:intron | 20.0% |
| !! | TTATACTTAATGTAATTGGT+AGG | + | chr4.2:42999621-42999640 | MS.gene004142:intron | 20.0% |
| !! | TTGGTTATACTTAATGTAAT+TGG | + | chr4.2:42999617-42999636 | MS.gene004142:intron | 20.0% |
| !!! | AAACAACTACAATCAATTTT+AGG | - | chr4.2:42999204-42999223 | None:intergenic | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | + | chr4.2:42997969-42997988 | MS.gene004142:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | + | chr4.2:42998569-42998588 | MS.gene004142:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | + | chr4.2:42998622-42998641 | MS.gene004142:intron | 20.0% |
| !!! | ATGATTTGTTTGAGATTTTT+TGG | + | chr4.2:42997932-42997951 | MS.gene004142:intron | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | + | chr4.2:42997767-42997786 | MS.gene004142:intron | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | + | chr4.2:42997959-42997978 | MS.gene004142:intron | 20.0% |
| !!! | TTTAAAGTCAATACATACAA+TGG | - | chr4.2:42999338-42999357 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | + | chr4.2:42999097-42999116 | MS.gene004142:intron | 20.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | - | chr4.2:42997752-42997771 | None:intergenic | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | + | chr4.2:42998779-42998798 | MS.gene004142:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | - | chr4.2:42998874-42998893 | None:intergenic | 25.0% |
| ! | ACAAAAAAAAATAGGGCAAT+GGG | - | chr4.2:42999755-42999774 | None:intergenic | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | - | chr4.2:42999945-42999964 | None:intergenic | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | + | chr4.2:42999800-42999819 | MS.gene004142:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | + | chr4.2:42998654-42998673 | MS.gene004142:intron | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | + | chr4.2:42999799-42999818 | MS.gene004142:intron | 25.0% |
| ! | TTTCTCATTGTTGATGTAAA+TGG | + | chr4.2:42998519-42998538 | MS.gene004142:intron | 25.0% |
| !! | ATTTGATTCTTGATTTTTGC+AGG | + | chr4.2:42999232-42999251 | MS.gene004142:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | + | chr4.2:42998640-42998659 | MS.gene004142:intron | 25.0% |
| !! | TTTTATATTTGGAGGCTAAT+TGG | + | chr4.2:42999070-42999089 | MS.gene004142:intron | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | + | chr4.2:42997970-42997989 | MS.gene004142:intron | 25.0% |
| !!! | ATTTATGTGGTTTGTTTTTG+TGG | + | chr4.2:42998403-42998422 | MS.gene004142:intron | 25.0% |
| !!! | ATTTCAGTCATTGATTTATG+TGG | + | chr4.2:42998390-42998409 | MS.gene004142:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | + | chr4.2:42999385-42999404 | MS.gene004142:intron | 25.0% |
| !!! | TTATGATTTGTTTGTGTAGA+TGG | + | chr4.2:42998150-42998169 | MS.gene004142:intron | 25.0% |
| AAATACAACAAATCACTACC+TGG | - | chr4.2:42998343-42998362 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | - | chr4.2:42998317-42998336 | None:intergenic | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | - | chr4.2:42998316-42998335 | None:intergenic | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | + | chr4.2:42998991-42999010 | MS.gene004142:intron | 30.0% | |
| CACAAAAAAAAATAGGGCAA+TGG | - | chr4.2:42999756-42999775 | None:intergenic | 30.0% | |
| TATGAGTTGTCAAAAATGAG+AGG | - | chr4.2:42999697-42999716 | None:intergenic | 30.0% | |
| TGGATTTCATACATTTCTGT+TGG | + | chr4.2:42998888-42998907 | MS.gene004142:intron | 30.0% | |
| TTTAAATTATGGCTGCATTG+TGG | + | chr4.2:42999487-42999506 | MS.gene004142:intron | 30.0% | |
| TTTGATTCAAAGACAAAGAC+TGG | + | chr4.2:42998188-42998207 | MS.gene004142:CDS | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | + | chr4.2:42998868-42998887 | MS.gene004142:intron | 30.0% |
| AGTCAATACATACAATGGTG+TGG | - | chr4.2:42999333-42999352 | None:intergenic | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | + | chr4.2:43000075-43000094 | MS.gene004142:CDS | 35.0% | |
| ATTGCAAATGCGTTTCAAAC+AGG | - | chr4.2:42998774-42998793 | None:intergenic | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | - | chr4.2:42999902-42999921 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | - | chr4.2:42998850-42998869 | None:intergenic | 35.0% | |
| GAAATGATTAGGGAGTTGTT+GGG | + | chr4.2:42999810-42999829 | MS.gene004142:intron | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | + | chr4.2:43000016-43000035 | MS.gene004142:intron | 35.0% | |
| TGAAATGATTAGGGAGTTGT+TGG | + | chr4.2:42999809-42999828 | MS.gene004142:intron | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | - | chr4.2:42998917-42998936 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | + | chr4.2:42999423-42999442 | MS.gene004142:intron | 35.0% | |
| !! | GCATTTCTAGTTATCACATG+AGG | - | chr4.2:42998952-42998971 | None:intergenic | 35.0% |
| !! | GCTAATTGGTCCTTTTGTTT+TGG | + | chr4.2:42999084-42999103 | MS.gene004142:intron | 35.0% |
| !! | TGTTTTTGTGGTTATGCAGT+TGG | + | chr4.2:42998415-42998434 | MS.gene004142:intron | 35.0% |
| !!! | TGTTGTGTTTTTTACCACAC+AGG | + | chr4.2:43000223-43000242 | MS.gene004142:intron | 35.0% |
| AAATCCAGAACACTAACCCT+TGG | - | chr4.2:42999165-42999184 | None:intergenic | 40.0% | |
| ATGAGAGGATTAGAAGTCCA+TGG | - | chr4.2:42999682-42999701 | None:intergenic | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | + | chr4.2:42999272-42999291 | MS.gene004142:CDS | 40.0% | |
| ATTGGGAATTGCTCCTTAAG+AGG | - | chr4.2:42998299-42998318 | None:intergenic | 40.0% | |
| CATATTTCTCAACAAGTGGG+CGG | - | chr4.2:42999899-42999918 | None:intergenic | 40.0% | |
| CATCAAAAGCTATCTGAGCT+TGG | + | chr4.2:43000074-43000093 | MS.gene004142:CDS | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | + | chr4.2:42999271-42999290 | MS.gene004142:CDS | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | + | chr4.2:42998191-42998210 | MS.gene004142:CDS | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | - | chr4.2:42999903-42999922 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | - | chr4.2:42999000-42999019 | None:intergenic | 40.0% | |
| TAAGTTCCGCATTATCCACT+GGG | + | chr4.2:43000190-43000209 | MS.gene004142:intron | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | - | chr4.2:42999851-42999870 | None:intergenic | 40.0% | |
| TCTAGTTATCACATGAGGAC+AGG | - | chr4.2:42998947-42998966 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | + | chr4.2:42999851-42999870 | MS.gene004142:CDS | 40.0% | |
| TGAGAGGATTAGAAGTCCAT+GGG | - | chr4.2:42999681-42999700 | None:intergenic | 40.0% | |
| TTAAGTTCCGCATTATCCAC+TGG | + | chr4.2:43000189-43000208 | MS.gene004142:intron | 40.0% | |
| TTACCAAAAGGCTGTTGAGA+AGG | + | chr4.2:42997671-42997690 | MS.gene004142:CDS | 40.0% | |
| ! | AGATAGCTTTTGATGAGCCT+CGG | - | chr4.2:43000069-43000088 | None:intergenic | 40.0% |
| ! | CGTTGAGATTGTGACTGTTT+TGG | + | chr4.2:42999598-42999617 | MS.gene004142:intron | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | + | chr4.2:42998443-42998462 | MS.gene004142:CDS | 40.0% |
| ! | TGATATCGCTGTTAGGCTTT+TGG | + | chr4.2:42998271-42998290 | MS.gene004142:CDS | 40.0% |
| ! | TTTCTTTGCTGATTATGCCG+AGG | + | chr4.2:43000049-43000068 | MS.gene004142:CDS | 40.0% |
| !! | CTCAAAAGTGCCTTATCACT+TGG | - | chr4.2:42999864-42999883 | None:intergenic | 40.0% |
| !! | CTTTTGGTAATCAGCACTCA+CGG | - | chr4.2:42997661-42997680 | None:intergenic | 40.0% |
| !! | GGAGGTACGTTTACTACTTT+TGG | + | chr4.2:42998496-42998515 | MS.gene004142:intron | 40.0% |
| !! | TAGCTATGCTGATTTCTACC+AGG | + | chr4.2:42998322-42998341 | MS.gene004142:CDS | 40.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | + | chr4.2:42998200-42998219 | MS.gene004142:CDS | 45.0% | |
| ACGGTCTTGATATCGCTGTT+AGG | + | chr4.2:42998264-42998283 | MS.gene004142:CDS | 45.0% | |
| ATGATTAGGGAGTTGTTGGG+TGG | + | chr4.2:42999813-42999832 | MS.gene004142:intron | 45.0% | |
| CAACATGAATCAACTCCCAG+TGG | - | chr4.2:43000208-43000227 | None:intergenic | 45.0% | |
| GACCATTTGAGGGATGTGTT+TGG | + | chr4.2:42999259-42999278 | MS.gene004142:CDS | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | + | chr4.2:42999270-42999289 | MS.gene004142:CDS | 45.0% | |
| TAGTAAACGTACCTCCCTAC+CGG | - | chr4.2:42998492-42998511 | None:intergenic | 45.0% | |
| TCAACTCCCAGTGGATAATG+CGG | - | chr4.2:43000199-43000218 | None:intergenic | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | - | chr4.2:42999264-42999283 | None:intergenic | 45.0% | |
| TGTCTTGCAGTTCACGTTCT+TGG | + | chr4.2:42998810-42998829 | MS.gene004142:intron | 45.0% | |
| TTTGTGGTTATGCAGTTGGC+TGG | + | chr4.2:42998419-42998438 | MS.gene004142:intron | 45.0% | |
| ! | CTTGCTCATGGTGCTAACAA+CGG | + | chr4.2:42998245-42998264 | MS.gene004142:CDS | 45.0% |
| ! | GTTGCTGTTGAGATTACTGG+TGG | + | chr4.2:42998446-42998465 | MS.gene004142:CDS | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | + | chr4.2:42999249-42999268 | MS.gene004142:intron | 45.0% |
| ! | TTGCAGGTTCTGACCATTTG+AGG | + | chr4.2:42999248-42999267 | MS.gene004142:intron | 45.0% |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | + | chr4.2:42999655-42999674 | MS.gene004142:CDS | 45.0% |
| !! | CGTGAGTGCTGATTACCAAA+AGG | + | chr4.2:42997659-42997678 | MS.gene004142:CDS | 45.0% |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | + | chr4.2:42998283-42998302 | MS.gene004142:CDS | 45.0% |
| AGTAAACGTACCTCCCTACC+GGG | - | chr4.2:42998491-42998510 | None:intergenic | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | - | chr4.2:42999890-42999909 | None:intergenic | 50.0% | |
| CAGACAGAGCAACAATGTCC+TGG | - | chr4.2:42999306-42999325 | None:intergenic | 50.0% | |
| CAGGACATTGTTGCTCTGTC+TGG | + | chr4.2:42999304-42999323 | MS.gene004142:CDS | 50.0% | |
| GACATTGTTGCTCTGTCTGG+TGG | + | chr4.2:42999307-42999326 | MS.gene004142:CDS | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | - | chr4.2:42997656-42997675 | None:intergenic | 50.0% | |
| TACGCCAAACGGAGCATAAG+AGG | - | chr4.2:42997741-42997760 | None:intergenic | 50.0% | |
| TAGGCTTCTGCAAACCTGTG+TGG | - | chr4.2:43000240-43000259 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | - | chr4.2:42999891-42999910 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | - | chr4.2:42999162-42999181 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | - | chr4.2:42997657-42997676 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | + | chr4.2:42998161-42998180 | MS.gene004142:intron | 50.0% | |
| TTGTTGGGTGGTGAGAAGGA+AGG | + | chr4.2:42999825-42999844 | MS.gene004142:CDS | 50.0% | |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | - | chr4.2:42997677-42997696 | None:intergenic | 50.0% |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | - | chr4.2:42998218-42998237 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | - | chr4.2:42998228-42998247 | None:intergenic | 50.0% |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | + | chr4.2:42999654-42999673 | MS.gene004142:CDS | 50.0% |
| AAGGCGAAGAGGAAGCTCAG+AGG | + | chr4.2:42997690-42997709 | MS.gene004142:CDS | 55.0% | |
| AAGTTCCTTTCCACCCCGGT+AGG | + | chr4.2:42998474-42998493 | MS.gene004142:CDS | 55.0% | |
| AGCTATGGGGCTTAGTGACC+AGG | + | chr4.2:42999285-42999304 | MS.gene004142:CDS | 55.0% | |
| AGGCTGTTGAGAAGGCGAAG+AGG | + | chr4.2:42997679-42997698 | MS.gene004142:CDS | 55.0% | |
| AGTTCCTTTCCACCCCGGTA+GGG | + | chr4.2:42998475-42998494 | MS.gene004142:CDS | 55.0% | |
| CACCATGAGCAAGCTCAGCT+TGG | - | chr4.2:42998238-42998257 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+CGG | + | chr4.2:42998470-42998489 | MS.gene004142:CDS | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | + | chr4.2:42997734-42997753 | MS.gene004142:CDS | 55.0% | |
| GGAGTTGTTGGGTGGTGAGA+AGG | + | chr4.2:42999821-42999840 | MS.gene004142:CDS | 55.0% | |
| GTAAACGTACCTCCCTACCG+GGG | - | chr4.2:42998490-42998509 | None:intergenic | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | + | chr4.2:42999636-42999655 | MS.gene004142:intron | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | + | chr4.2:42998233-42998252 | MS.gene004142:CDS | 55.0% |
| ! | CACTAACCCTTGGTGGCATC+AGG | - | chr4.2:42999155-42999174 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | + | chr4.2:42999158-42999177 | MS.gene004142:intron | 55.0% |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | + | chr4.2:42999662-42999681 | MS.gene004142:CDS | 55.0% |
| AAGCCTGAGCCACCACCAGA+GGG | + | chr4.2:42999122-42999141 | MS.gene004142:CDS | 60.0% | |
| CCGGGGTGGAAAGGAACTTC+AGG | - | chr4.2:42998473-42998492 | None:intergenic | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | + | chr4.2:42999146-42999165 | MS.gene004142:CDS | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | + | chr4.2:42999145-42999164 | MS.gene004142:CDS | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | + | chr4.2:42999646-42999665 | MS.gene004142:CDS | 60.0% |
| AACGTACCTCCCTACCGGGG+TGG | - | chr4.2:42998487-42998506 | None:intergenic | 65.0% | |
| ACCTCCCTACCGGGGTGGAA+AGG | - | chr4.2:42998482-42998501 | None:intergenic | 65.0% | |
| CAAGCCTGAGCCACCACCAG+AGG | + | chr4.2:42999121-42999140 | MS.gene004142:CDS | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | - | chr4.2:42999140-42999159 | None:intergenic | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | - | chr4.2:42999137-42999156 | None:intergenic | 65.0% | |
| TCCTTTCCACCCCGGTAGGG+AGG | + | chr4.2:42998478-42998497 | MS.gene004142:CDS | 65.0% | |
| GGCAAGCGACCCTCTGGTGG+TGG | - | chr4.2:42999134-42999153 | None:intergenic | 70.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | - | chr4.2:42999128-42999147 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 42997639 | 43000260 | 42997639 | ID=MS.gene004142 |
| chr4.2 | mRNA | 42997639 | 43000260 | 42997639 | ID=MS.gene004142.t1;Parent=MS.gene004142 |
| chr4.2 | exon | 42997639 | 42997757 | 42997639 | ID=MS.gene004142.t1.exon1;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42997639 | 42997757 | 42997639 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 42998169 | 42998343 | 42998169 | ID=MS.gene004142.t1.exon2;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42998169 | 42998343 | 42998169 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 42998434 | 42998499 | 42998434 | ID=MS.gene004142.t1.exon3;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42998434 | 42998499 | 42998434 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 42999119 | 42999167 | 42999119 | ID=MS.gene004142.t1.exon4;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42999119 | 42999167 | 42999119 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 42999254 | 42999339 | 42999254 | ID=MS.gene004142.t1.exon5;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42999254 | 42999339 | 42999254 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 42999643 | 42999722 | 42999643 | ID=MS.gene004142.t1.exon6;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42999643 | 42999722 | 42999643 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 42999821 | 42999923 | 42999821 | ID=MS.gene004142.t1.exon7;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 42999821 | 42999923 | 42999821 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 43000038 | 43000096 | 43000038 | ID=MS.gene004142.t1.exon8;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 43000038 | 43000096 | 43000038 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| chr4.2 | exon | 43000245 | 43000260 | 43000245 | ID=MS.gene004142.t1.exon9;Parent=MS.gene004142.t1 |
| chr4.2 | CDS | 43000245 | 43000260 | 43000245 | ID=cds.MS.gene004142.t1;Parent=MS.gene004142.t1 |
| Gene Sequence |
| Protein sequence |
