Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37417.t1 | XP_003603161.1 | 95.8 | 381 | 13 | 1 | 1 | 381 | 1 | 378 | 1.10E-197 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37417.t1 | P41152 | 49.9 | 347 | 153 | 6 | 38 | 379 | 20 | 350 | 3.5e-83 | 310.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37417.t1 | G7J7P1 | 95.8 | 381 | 13 | 1 | 1 | 381 | 1 | 378 | 8.0e-198 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene37417.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37417 | MS.gene065968 | PPI |
| MS.gene37417 | MS.gene65265 | PPI |
| MS.gene004142 | MS.gene37417 | PPI |
| MS.gene27848 | MS.gene37417 | PPI |
| MS.gene37417 | MS.gene023615 | PPI |
| MS.gene049841 | MS.gene37417 | PPI |
| MS.gene08571 | MS.gene37417 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37417.t1 | MTR_3g104550 | 95.801 | 381 | 13 | 1 | 1 | 381 | 1 | 378 | 0.0 | 751 |
| MS.gene37417.t1 | MTR_7g095680 | 54.924 | 264 | 112 | 2 | 8 | 264 | 8 | 271 | 9.47e-94 | 285 |
| MS.gene37417.t1 | MTR_1g102860 | 57.831 | 249 | 92 | 6 | 36 | 273 | 27 | 273 | 7.45e-92 | 279 |
| MS.gene37417.t1 | MTR_5g029680 | 55.357 | 224 | 84 | 4 | 36 | 247 | 21 | 240 | 2.21e-80 | 255 |
| MS.gene37417.t1 | MTR_4g077970 | 54.808 | 208 | 86 | 2 | 48 | 247 | 11 | 218 | 3.90e-73 | 236 |
| MS.gene37417.t1 | MTR_1g071360 | 44.224 | 303 | 143 | 8 | 36 | 331 | 19 | 302 | 6.70e-73 | 231 |
| MS.gene37417.t1 | MTR_1g071360 | 44.224 | 303 | 143 | 8 | 36 | 331 | 16 | 299 | 1.12e-72 | 231 |
| MS.gene37417.t1 | MTR_1g061170 | 45.161 | 279 | 147 | 4 | 35 | 310 | 35 | 310 | 9.78e-72 | 231 |
| MS.gene37417.t1 | MTR_6g086805 | 45.274 | 201 | 106 | 2 | 49 | 249 | 11 | 207 | 7.36e-53 | 179 |
| MS.gene37417.t1 | MTR_8g087540 | 40.948 | 232 | 129 | 2 | 48 | 275 | 11 | 238 | 9.22e-50 | 172 |
| MS.gene37417.t1 | MTR_8g105780 | 45.876 | 194 | 98 | 2 | 49 | 235 | 22 | 215 | 6.48e-49 | 169 |
| MS.gene37417.t1 | MTR_2g100680 | 39.604 | 202 | 117 | 2 | 47 | 247 | 29 | 226 | 3.57e-48 | 169 |
| MS.gene37417.t1 | MTR_2g100670 | 41.146 | 192 | 109 | 1 | 44 | 235 | 28 | 215 | 3.65e-46 | 160 |
| MS.gene37417.t1 | MTR_8g083100 | 43.284 | 201 | 104 | 5 | 50 | 247 | 23 | 216 | 9.01e-46 | 164 |
| MS.gene37417.t1 | MTR_6g043060 | 42.365 | 203 | 107 | 5 | 49 | 248 | 22 | 217 | 1.01e-45 | 160 |
| MS.gene37417.t1 | MTR_2g100670 | 40.933 | 193 | 110 | 1 | 43 | 235 | 135 | 323 | 2.79e-45 | 161 |
| MS.gene37417.t1 | MTR_2g017890 | 41.243 | 177 | 101 | 1 | 48 | 221 | 14 | 190 | 2.20e-43 | 155 |
| MS.gene37417.t1 | MTR_5g010680 | 62.766 | 94 | 35 | 0 | 47 | 140 | 22 | 115 | 6.33e-38 | 140 |
| MS.gene37417.t1 | MTR_7g091370 | 45.062 | 162 | 76 | 3 | 40 | 188 | 9 | 170 | 2.03e-37 | 135 |
| MS.gene37417.t1 | MTR_3g101870 | 56.757 | 111 | 43 | 1 | 43 | 153 | 18 | 123 | 1.18e-36 | 137 |
| MS.gene37417.t1 | MTR_5g017470 | 55.882 | 102 | 45 | 0 | 46 | 147 | 6 | 107 | 1.19e-36 | 135 |
| MS.gene37417.t1 | MTR_0020s0020 | 58.511 | 94 | 39 | 0 | 47 | 140 | 31 | 124 | 1.09e-34 | 130 |
| MS.gene37417.t1 | MTR_1g100777 | 54.206 | 107 | 49 | 0 | 47 | 153 | 16 | 122 | 1.59e-34 | 129 |
| MS.gene37417.t1 | MTR_1g061170 | 38.537 | 205 | 120 | 4 | 109 | 310 | 14 | 215 | 2.99e-34 | 130 |
| MS.gene37417.t1 | MTR_5g089170 | 60.638 | 94 | 37 | 0 | 47 | 140 | 23 | 116 | 8.64e-34 | 126 |
| MS.gene37417.t1 | MTR_4g088900 | 47.009 | 117 | 53 | 2 | 28 | 140 | 17 | 128 | 6.52e-29 | 112 |
| MS.gene37417.t1 | MTR_4g045757 | 51.429 | 70 | 33 | 1 | 40 | 108 | 5 | 74 | 7.48e-18 | 77.8 |
| MS.gene37417.t1 | MTR_5g047190 | 45.977 | 87 | 40 | 2 | 57 | 136 | 1 | 87 | 3.84e-15 | 70.9 |
| MS.gene37417.t1 | MTR_2g043940 | 29.442 | 197 | 105 | 8 | 85 | 266 | 7 | 184 | 7.67e-12 | 66.6 |
| MS.gene37417.t1 | MTR_6g044340 | 29.299 | 157 | 101 | 4 | 95 | 248 | 8 | 157 | 1.92e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37417.t1 | AT2G26150 | 51.862 | 349 | 124 | 7 | 36 | 379 | 31 | 340 | 2.62e-121 | 355 |
| MS.gene37417.t1 | AT2G26150 | 51.862 | 349 | 124 | 7 | 36 | 379 | 31 | 340 | 2.62e-121 | 355 |
| MS.gene37417.t1 | AT3G22830 | 43.978 | 357 | 159 | 8 | 36 | 359 | 48 | 396 | 1.23e-87 | 271 |
| MS.gene37417.t1 | AT3G51910 | 55.357 | 224 | 79 | 3 | 39 | 256 | 19 | 227 | 6.39e-77 | 239 |
| MS.gene37417.t1 | AT4G17750 | 51.570 | 223 | 91 | 2 | 47 | 252 | 50 | 272 | 3.61e-76 | 244 |
| MS.gene37417.t1 | AT1G32330 | 44.554 | 303 | 141 | 8 | 15 | 298 | 3 | 297 | 7.35e-75 | 240 |
| MS.gene37417.t1 | AT1G32330 | 44.554 | 303 | 141 | 8 | 15 | 298 | 3 | 297 | 8.53e-75 | 240 |
| MS.gene37417.t1 | AT5G16820 | 50.655 | 229 | 97 | 3 | 27 | 244 | 10 | 233 | 1.23e-74 | 239 |
| MS.gene37417.t1 | AT5G16820 | 50.655 | 229 | 97 | 3 | 27 | 244 | 10 | 233 | 1.23e-74 | 239 |
| MS.gene37417.t1 | AT3G02990 | 44.286 | 280 | 140 | 6 | 48 | 318 | 22 | 294 | 1.17e-73 | 237 |
| MS.gene37417.t1 | AT5G43840 | 47.863 | 234 | 105 | 3 | 36 | 269 | 6 | 222 | 1.93e-69 | 220 |
| MS.gene37417.t1 | AT3G63350 | 43.175 | 315 | 119 | 7 | 25 | 331 | 4 | 266 | 3.64e-69 | 219 |
| MS.gene37417.t1 | AT2G26150 | 44.404 | 277 | 108 | 8 | 109 | 379 | 49 | 285 | 3.92e-68 | 217 |
| MS.gene37417.t1 | AT2G26150 | 44.404 | 277 | 108 | 8 | 109 | 379 | 49 | 285 | 3.92e-68 | 217 |
| MS.gene37417.t1 | AT5G03720 | 45.815 | 227 | 111 | 4 | 17 | 240 | 24 | 241 | 1.05e-60 | 201 |
| MS.gene37417.t1 | AT5G03720 | 45.815 | 227 | 111 | 4 | 17 | 240 | 24 | 241 | 1.05e-60 | 201 |
| MS.gene37417.t1 | AT1G67970 | 47.872 | 188 | 97 | 1 | 49 | 235 | 19 | 206 | 5.76e-56 | 188 |
| MS.gene37417.t1 | AT5G54070 | 42.857 | 217 | 109 | 3 | 42 | 257 | 63 | 265 | 1.50e-55 | 186 |
| MS.gene37417.t1 | AT4G13980 | 40.201 | 199 | 114 | 2 | 50 | 247 | 24 | 218 | 4.48e-48 | 169 |
| MS.gene37417.t1 | AT3G24520 | 45.411 | 207 | 86 | 5 | 49 | 251 | 17 | 200 | 1.53e-47 | 164 |
| MS.gene37417.t1 | AT5G45710 | 38.725 | 204 | 118 | 2 | 48 | 251 | 12 | 208 | 3.23e-37 | 137 |
| MS.gene37417.t1 | AT5G45710 | 38.725 | 204 | 118 | 2 | 48 | 251 | 12 | 208 | 3.23e-37 | 137 |
| MS.gene37417.t1 | AT4G36990 | 52.632 | 114 | 48 | 1 | 47 | 160 | 12 | 119 | 1.55e-36 | 134 |
| MS.gene37417.t1 | AT1G46264 | 38.191 | 199 | 70 | 3 | 39 | 187 | 24 | 219 | 2.65e-36 | 135 |
| MS.gene37417.t1 | AT2G41690 | 48.889 | 135 | 52 | 2 | 6 | 140 | 14 | 131 | 5.54e-36 | 132 |
| MS.gene37417.t1 | AT4G18880 | 44.000 | 175 | 97 | 1 | 48 | 221 | 14 | 188 | 1.23e-35 | 135 |
| MS.gene37417.t1 | AT5G62020 | 55.882 | 102 | 45 | 0 | 47 | 148 | 21 | 122 | 1.71e-35 | 132 |
| MS.gene37417.t1 | AT4G11660 | 58.511 | 94 | 39 | 0 | 47 | 140 | 57 | 150 | 2.10e-34 | 131 |
| MS.gene37417.t1 | AT4G18870 | 34.711 | 121 | 75 | 1 | 49 | 165 | 146 | 266 | 1.40e-20 | 91.3 |
| MS.gene37417.t1 | AT4G18870 | 43.678 | 87 | 48 | 1 | 50 | 136 | 14 | 99 | 6.81e-18 | 83.6 |
| MS.gene37417.t1 | AT1G77570 | 36.667 | 90 | 54 | 2 | 50 | 136 | 27 | 116 | 6.69e-13 | 66.2 |
Find 80 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGCTTGTATTGAATT+AGG | 0.198844 | 3.4:+91525980 | MS.gene37417:CDS |
| CTCGTAATAGCTTTGTTGTT+TGG | 0.240497 | 3.4:+91525468 | MS.gene37417:CDS |
| TGGTAGAAAATAATGATAAT+TGG | 0.250597 | 3.4:+91526599 | MS.gene37417:CDS |
| AAGTGGTAATGAGAGTAATT+TGG | 0.259305 | 3.4:+91526468 | MS.gene37417:CDS |
| TTCAACAACATCAAAGGTTT+TGG | 0.271463 | 3.4:-91525408 | None:intergenic |
| TGCAATCCTTCCATTGGTTT+TGG | 0.278910 | 3.4:-91525359 | None:intergenic |
| CCACTGATTCCATTGTTTCA+TGG | 0.288131 | 3.4:+91525438 | MS.gene37417:CDS |
| TCGTAATAGCTTTGTTGTTT+GGG | 0.292309 | 3.4:+91525469 | MS.gene37417:CDS |
| AACTCTTCATCTTCCTCTTC+GGG | 0.307939 | 3.4:+91525323 | MS.gene37417:CDS |
| CCAATCACAACTTCATCTTC+TGG | 0.312679 | 3.4:-91526541 | None:intergenic |
| TGTATTGAATTAGGGGAGTA+TGG | 0.320828 | 3.4:+91525989 | MS.gene37417:CDS |
| TAACTCTTCATCTTCCTCTT+CGG | 0.322245 | 3.4:+91525322 | MS.gene37417:CDS |
| AAGATGATTCTGAAGCTATA+AGG | 0.331696 | 3.4:+91526293 | MS.gene37417:CDS |
| GCTCACTGCTAGTTCGAGTT+TGG | 0.362423 | 3.4:+91526261 | MS.gene37417:CDS |
| TTAGCATATGTCAGTGTTGT+TGG | 0.370710 | 3.4:+91525287 | MS.gene37417:CDS |
| TGATGTGCCCGTGGAGGATT+TGG | 0.372993 | 3.4:+91526579 | MS.gene37417:CDS |
| GCAGAGCCTTGTTGATCAAA+TGG | 0.381911 | 3.4:+91526633 | MS.gene37417:CDS |
| TGAATCAAGCAGTGAAGTTA+AGG | 0.388539 | 3.4:+91526420 | MS.gene37417:CDS |
| AATGGAAGGATTGCACGAAA+TGG | 0.400329 | 3.4:+91525367 | MS.gene37417:CDS |
| AGTGGTAATGAGAGTAATTT+GGG | 0.400460 | 3.4:+91526469 | MS.gene37417:CDS |
| GTGGTGCTTGTATTGAATTA+GGG | 0.418246 | 3.4:+91525981 | MS.gene37417:CDS |
| TGGCTGAGATTGTGAAGTTA+AGG | 0.421096 | 3.4:+91526059 | MS.gene37417:CDS |
| CAGAGCCTTGTTGATCAAAT+GGG | 0.427250 | 3.4:+91526634 | MS.gene37417:CDS |
| TTAGGGGAGTATGGTCTTGA+AGG | 0.455498 | 3.4:+91525998 | MS.gene37417:CDS |
| AGATGATTCTGAAGCTATAA+GGG | 0.457075 | 3.4:+91526294 | MS.gene37417:CDS |
| GAAGGGAATTAGAGTGAAAG+AGG | 0.460183 | 3.4:+91525256 | MS.gene37417:CDS |
| GTGAGATTGAGAGGTTGAGA+AGG | 0.465030 | 3.4:+91526020 | MS.gene37417:CDS |
| GATTCCCACCAACCAACTCT+TGG | 0.469023 | 3.4:-91526519 | None:intergenic |
| ATGGAAGGATTGCACGAAAT+GGG | 0.473051 | 3.4:+91525368 | MS.gene37417:CDS |
| CAAGCTATGCAGCAAGAGAC+TGG | 0.480304 | 3.4:+91525959 | MS.gene37417:CDS |
| TAATCAACCACAGACTCAAT+TGG | 0.480632 | 3.4:-91526322 | None:intergenic |
| ATTTCGTGCAATCCTTCCAT+TGG | 0.481224 | 3.4:-91525365 | None:intergenic |
| GCGTTGAAATGAAGCGAAAA+CGG | 0.487154 | 3.4:+91526236 | MS.gene37417:CDS |
| TGAGATTGAGAGGTTGAGAA+GGG | 0.495911 | 3.4:+91526021 | MS.gene37417:CDS |
| AAGGGAGCAATTATCTGCTA+TGG | 0.496135 | 3.4:+91526099 | MS.gene37417:CDS |
| GGCAGCAGCAGCATAATTCA+AGG | 0.500409 | 3.4:+91526080 | MS.gene37417:CDS |
| CGATGGGAGTTTGCGAACGA+AGG | 0.501252 | 3.4:+91525872 | MS.gene37417:CDS |
| TTGAGAGGTTGAGAAGGGAC+AGG | 0.504469 | 3.4:+91526026 | MS.gene37417:CDS |
| TTCGCAAACTCCCATCGATC+CGG | 0.510214 | 3.4:-91525866 | None:intergenic |
| AATTATCTGCTATGGAAGCT+AGG | 0.522811 | 3.4:+91526107 | MS.gene37417:CDS |
| CCAGAAGATGAAGTTGTGAT+TGG | 0.531597 | 3.4:+91526541 | MS.gene37417:CDS |
| GACTACTATTGAGTCTGAGA+TGG | 0.532873 | 3.4:+91526372 | MS.gene37417:CDS |
| CTGAACCAAGAGTTGGTTGG+TGG | 0.536158 | 3.4:+91526514 | MS.gene37417:CDS |
| AAAAGTTGATCCGGATCGAT+GGG | 0.538609 | 3.4:+91525856 | MS.gene37417:CDS |
| GAAAAGTTGATCCGGATCGA+TGG | 0.539674 | 3.4:+91525855 | MS.gene37417:CDS |
| GATGGGAGTTTGCGAACGAA+GGG | 0.539714 | 3.4:+91525873 | MS.gene37417:CDS |
| GGATTTACTGAACCAAGAGT+TGG | 0.543897 | 3.4:+91526507 | MS.gene37417:CDS |
| TTTGGGTGATGCTGTGTGGG+AGG | 0.547697 | 3.4:+91526486 | MS.gene37417:CDS |
| TAATTTGGGTGATGCTGTGT+GGG | 0.557732 | 3.4:+91526483 | MS.gene37417:CDS |
| TGGATCTTCAACAACATCAA+AGG | 0.559140 | 3.4:-91525414 | None:intergenic |
| AAATTACTCTCATTACCACT+TGG | 0.571022 | 3.4:-91526466 | None:intergenic |
| AAATCTTACACCAAAACCAA+TGG | 0.575232 | 3.4:+91525349 | MS.gene37417:CDS |
| GTCTTGAAGGTGAGATTGAG+AGG | 0.580331 | 3.4:+91526011 | MS.gene37417:CDS |
| CTCTTGTCACGAGCAGCAAG+AGG | 0.588881 | 3.4:+91526345 | MS.gene37417:CDS |
| CCATGAAACAATGGAATCAG+TGG | 0.596228 | 3.4:-91525438 | None:intergenic |
| GAAACAATGGAATCAGTGGA+TGG | 0.602123 | 3.4:-91525434 | None:intergenic |
| CAAAACCCATTTGATCAACA+AGG | 0.605749 | 3.4:-91526639 | None:intergenic |
| GCATCAACTAACTCAATGAA+GGG | 0.610881 | 3.4:+91525239 | None:intergenic |
| TGGTGCTTGTATTGAATTAG+GGG | 0.613155 | 3.4:+91525982 | MS.gene37417:CDS |
| TGAGAGGTTGAGAAGGGACA+GGG | 0.615785 | 3.4:+91526027 | MS.gene37417:CDS |
| TGAACCAAGAGTTGGTTGGT+GGG | 0.615910 | 3.4:+91526515 | MS.gene37417:CDS |
| GATTCCATTGTTTCATGGAG+CGG | 0.618876 | 3.4:+91525443 | MS.gene37417:CDS |
| AAATAATGATAATTGGACTG+TGG | 0.619002 | 3.4:+91526606 | MS.gene37417:CDS |
| AACCACAGACTCAATTGGCA+CGG | 0.620284 | 3.4:-91526317 | None:intergenic |
| TGTAAGATTTGAACCCGAAG+AGG | 0.623342 | 3.4:-91525336 | None:intergenic |
| GCAGCAGCAGCATAATTCAA+GGG | 0.624420 | 3.4:+91526081 | MS.gene37417:CDS |
| GGCCGTGCCAATTGAGTCTG+TGG | 0.628717 | 3.4:+91526315 | MS.gene37417:CDS |
| TTCTCAAATTGATGTGCCCG+TGG | 0.628790 | 3.4:+91526570 | MS.gene37417:CDS |
| GTAACGAGGTAAAATAGCAG+TGG | 0.630092 | 3.4:-91525507 | None:intergenic |
| AGCTCCGCTCCATGAAACAA+TGG | 0.631104 | 3.4:-91525447 | None:intergenic |
| CTTACACCAAAACCAATGGA+AGG | 0.637289 | 3.4:+91525353 | MS.gene37417:CDS |
| TCAAATTGATGTGCCCGTGG+AGG | 0.639975 | 3.4:+91526573 | MS.gene37417:CDS |
| TTACTGAACCAAGAGTTGGT+TGG | 0.648299 | 3.4:+91526511 | MS.gene37417:CDS |
| TCTTGTCACGAGCAGCAAGA+GGG | 0.651954 | 3.4:+91526346 | MS.gene37417:CDS |
| GCACAGAATAGAGAGTTGAA+AGG | 0.656703 | 3.4:+91526214 | MS.gene37417:CDS |
| GTAATTTGGGTGATGCTGTG+TGG | 0.674970 | 3.4:+91526482 | MS.gene37417:CDS |
| TTGAAATGAAGCGAAAACGG+AGG | 0.685238 | 3.4:+91526239 | MS.gene37417:CDS |
| GCATTGAGTTCAGTTCCAAG+TGG | 0.687922 | 3.4:+91526451 | MS.gene37417:CDS |
| TTACTGTGTTTGAAGTAACG+AGG | 0.690403 | 3.4:-91525521 | None:intergenic |
| GCTATGCAGCAAGAGACTGG+TGG | 0.743962 | 3.4:+91525962 | MS.gene37417:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTAGAAAATAATGATAAT+TGG | + | chr3.4:91526599-91526618 | MS.gene37417:CDS | 20.0% |
| !!! | TCAATCTTTTATACAACAAT+TGG | + | chr3.4:91526192-91526211 | MS.gene37417:CDS | 20.0% |
| ! | AAATAATGATAATTGGACTG+TGG | + | chr3.4:91526606-91526625 | MS.gene37417:CDS | 25.0% |
| ! | AAGTGATAGTTAACTTACAT+AGG | - | chr3.4:91525576-91525595 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCATATGTGT+CGG | - | chr3.4:91525710-91525729 | None:intergenic | 25.0% |
| !! | AATTTTTGTGTTCATATGCA+GGG | + | chr3.4:91525827-91525846 | MS.gene37417:intron | 25.0% |
| AAATCTTACACCAAAACCAA+TGG | + | chr3.4:91525349-91525368 | MS.gene37417:CDS | 30.0% | |
| AAATTACTCTCATTACCACT+TGG | - | chr3.4:91526469-91526488 | None:intergenic | 30.0% | |
| AAGAACAAATTCACAAACAC+CGG | - | chr3.4:91525763-91525782 | None:intergenic | 30.0% | |
| TATGTCAATGTTGATGTATC+CGG | + | chr3.4:91525741-91525760 | MS.gene37417:intron | 30.0% | |
| ! | AAGTGGTAATGAGAGTAATT+TGG | + | chr3.4:91526468-91526487 | MS.gene37417:CDS | 30.0% |
| ! | AGTGGTAATGAGAGTAATTT+GGG | + | chr3.4:91526469-91526488 | MS.gene37417:CDS | 30.0% |
| ! | GAATTTTTGTGTTCATATGC+AGG | + | chr3.4:91525826-91525845 | MS.gene37417:intron | 30.0% |
| ! | TTCAACAACATCAAAGGTTT+TGG | - | chr3.4:91525411-91525430 | None:intergenic | 30.0% |
| !! | AAGATGATTCTGAAGCTATA+AGG | + | chr3.4:91526293-91526312 | MS.gene37417:CDS | 30.0% |
| !! | AGATGATTCTGAAGCTATAA+GGG | + | chr3.4:91526294-91526313 | MS.gene37417:CDS | 30.0% |
| !! | TCGTAATAGCTTTGTTGTTT+GGG | + | chr3.4:91525469-91525488 | MS.gene37417:CDS | 30.0% |
| AATTATCTGCTATGGAAGCT+AGG | + | chr3.4:91526107-91526126 | MS.gene37417:CDS | 35.0% | |
| CAAAACCCATTTGATCAACA+AGG | - | chr3.4:91526642-91526661 | None:intergenic | 35.0% | |
| GTGGTGCTTGTATTGAATTA+GGG | + | chr3.4:91525981-91526000 | MS.gene37417:CDS | 35.0% | |
| TAACTCTTCATCTTCCTCTT+CGG | + | chr3.4:91525322-91525341 | MS.gene37417:CDS | 35.0% | |
| TAATCAACCACAGACTCAAT+TGG | - | chr3.4:91526325-91526344 | None:intergenic | 35.0% | |
| TGAATCAAGCAGTGAAGTTA+AGG | + | chr3.4:91526420-91526439 | MS.gene37417:CDS | 35.0% | |
| TGGATCTTCAACAACATCAA+AGG | - | chr3.4:91525417-91525436 | None:intergenic | 35.0% | |
| TGGTGCTTGTATTGAATTAG+GGG | + | chr3.4:91525982-91526001 | MS.gene37417:CDS | 35.0% | |
| TGTATTGAATTAGGGGAGTA+TGG | + | chr3.4:91525989-91526008 | MS.gene37417:CDS | 35.0% | |
| TTAGCATATGTCAGTGTTGT+TGG | + | chr3.4:91525287-91525306 | MS.gene37417:CDS | 35.0% | |
| ! | ATTTTCTACCAAATCCTCCA+CGG | - | chr3.4:91526590-91526609 | None:intergenic | 35.0% |
| ! | TTACTGTGTTTGAAGTAACG+AGG | - | chr3.4:91525524-91525543 | None:intergenic | 35.0% |
| !! | CTCGTAATAGCTTTGTTGTT+TGG | + | chr3.4:91525468-91525487 | MS.gene37417:CDS | 35.0% |
| !! | TCAAAGGTTTTGGTGAGAAA+TGG | - | chr3.4:91525401-91525420 | None:intergenic | 35.0% |
| !!! | GGGTTTTAGAAAAGTTGATC+CGG | + | chr3.4:91525847-91525866 | MS.gene37417:intron | 35.0% |
| AACTCTTCATCTTCCTCTTC+GGG | + | chr3.4:91525323-91525342 | MS.gene37417:CDS | 40.0% | |
| AAGGGAGCAATTATCTGCTA+TGG | + | chr3.4:91526099-91526118 | MS.gene37417:CDS | 40.0% | |
| AATGGAAGGATTGCACGAAA+TGG | + | chr3.4:91525367-91525386 | MS.gene37417:CDS | 40.0% | |
| ATGGAAGGATTGCACGAAAT+GGG | + | chr3.4:91525368-91525387 | MS.gene37417:CDS | 40.0% | |
| ATTTCGTGCAATCCTTCCAT+TGG | - | chr3.4:91525368-91525387 | None:intergenic | 40.0% | |
| CCAATCACAACTTCATCTTC+TGG | - | chr3.4:91526544-91526563 | None:intergenic | 40.0% | |
| CCAGAAGATGAAGTTGTGAT+TGG | + | chr3.4:91526541-91526560 | MS.gene37417:CDS | 40.0% | |
| CCATGAAACAATGGAATCAG+TGG | - | chr3.4:91525441-91525460 | None:intergenic | 40.0% | |
| CTTACACCAAAACCAATGGA+AGG | + | chr3.4:91525353-91525372 | MS.gene37417:CDS | 40.0% | |
| GAAACAATGGAATCAGTGGA+TGG | - | chr3.4:91525437-91525456 | None:intergenic | 40.0% | |
| GAAGGGAATTAGAGTGAAAG+AGG | + | chr3.4:91525256-91525275 | MS.gene37417:CDS | 40.0% | |
| GACTACTATTGAGTCTGAGA+TGG | + | chr3.4:91526372-91526391 | MS.gene37417:CDS | 40.0% | |
| GATTCCATTGTTTCATGGAG+CGG | + | chr3.4:91525443-91525462 | MS.gene37417:CDS | 40.0% | |
| GCACAGAATAGAGAGTTGAA+AGG | + | chr3.4:91526214-91526233 | MS.gene37417:CDS | 40.0% | |
| GCGTTGAAATGAAGCGAAAA+CGG | + | chr3.4:91526236-91526255 | MS.gene37417:CDS | 40.0% | |
| GGATTTACTGAACCAAGAGT+TGG | + | chr3.4:91526507-91526526 | MS.gene37417:CDS | 40.0% | |
| GGTGGTGCTTGTATTGAATT+AGG | + | chr3.4:91525980-91525999 | MS.gene37417:CDS | 40.0% | |
| GTAACGAGGTAAAATAGCAG+TGG | - | chr3.4:91525510-91525529 | None:intergenic | 40.0% | |
| TAATTTGGGTGATGCTGTGT+GGG | + | chr3.4:91526483-91526502 | MS.gene37417:CDS | 40.0% | |
| TGAGATTGAGAGGTTGAGAA+GGG | + | chr3.4:91526021-91526040 | MS.gene37417:CDS | 40.0% | |
| TGGCTGAGATTGTGAAGTTA+AGG | + | chr3.4:91526059-91526078 | MS.gene37417:CDS | 40.0% | |
| TGTAAGATTTGAACCCGAAG+AGG | - | chr3.4:91525339-91525358 | None:intergenic | 40.0% | |
| TTGAAATGAAGCGAAAACGG+AGG | + | chr3.4:91526239-91526258 | MS.gene37417:CDS | 40.0% | |
| ! | AAAAGTTGATCCGGATCGAT+GGG | + | chr3.4:91525856-91525875 | MS.gene37417:CDS | 40.0% |
| ! | TTACTGAACCAAGAGTTGGT+TGG | + | chr3.4:91526511-91526530 | MS.gene37417:CDS | 40.0% |
| ! | TTTTCTACCAAATCCTCCAC+GGG | - | chr3.4:91526589-91526608 | None:intergenic | 40.0% |
| !! | AAGGTTTTGGTGAGAAATGG+AGG | - | chr3.4:91525398-91525417 | None:intergenic | 40.0% |
| !! | CAGAGCCTTGTTGATCAAAT+GGG | + | chr3.4:91526634-91526653 | MS.gene37417:CDS | 40.0% |
| !! | CCACTGATTCCATTGTTTCA+TGG | + | chr3.4:91525438-91525457 | MS.gene37417:CDS | 40.0% |
| !!! | TGCAATCCTTCCATTGGTTT+TGG | - | chr3.4:91525362-91525381 | None:intergenic | 40.0% |
| AACCACAGACTCAATTGGCA+CGG | - | chr3.4:91526320-91526339 | None:intergenic | 45.0% | |
| GCAGCAGCAGCATAATTCAA+GGG | + | chr3.4:91526081-91526100 | MS.gene37417:CDS | 45.0% | |
| GCATTGAGTTCAGTTCCAAG+TGG | + | chr3.4:91526451-91526470 | MS.gene37417:CDS | 45.0% | |
| GTAATTTGGGTGATGCTGTG+TGG | + | chr3.4:91526482-91526501 | MS.gene37417:CDS | 45.0% | |
| GTCTTGAAGGTGAGATTGAG+AGG | + | chr3.4:91526011-91526030 | MS.gene37417:CDS | 45.0% | |
| GTGAGATTGAGAGGTTGAGA+AGG | + | chr3.4:91526020-91526039 | MS.gene37417:CDS | 45.0% | |
| TTCTCAAATTGATGTGCCCG+TGG | + | chr3.4:91526570-91526589 | MS.gene37417:CDS | 45.0% | |
| ! | GAAAAGTTGATCCGGATCGA+TGG | + | chr3.4:91525855-91525874 | MS.gene37417:CDS | 45.0% |
| ! | TGAACCAAGAGTTGGTTGGT+GGG | + | chr3.4:91526515-91526534 | MS.gene37417:CDS | 45.0% |
| ! | TTAGGGGAGTATGGTCTTGA+AGG | + | chr3.4:91525998-91526017 | MS.gene37417:CDS | 45.0% |
| !! | AAGGGACAGGGCTGTTTTAA+TGG | + | chr3.4:91526039-91526058 | MS.gene37417:CDS | 45.0% |
| !! | GCAGAGCCTTGTTGATCAAA+TGG | + | chr3.4:91526633-91526652 | MS.gene37417:CDS | 45.0% |
| !! | GTTTTGGTGAGAAATGGAGG+TGG | - | chr3.4:91525395-91525414 | None:intergenic | 45.0% |
| !!! | CGAACGAAGGGTTTTTAGCT+GGG | + | chr3.4:91525885-91525904 | MS.gene37417:CDS | 45.0% |
| AGCTCCGCTCCATGAAACAA+TGG | - | chr3.4:91525450-91525469 | None:intergenic | 50.0% | |
| CAAGCTATGCAGCAAGAGAC+TGG | + | chr3.4:91525959-91525978 | MS.gene37417:CDS | 50.0% | |
| GATGGGAGTTTGCGAACGAA+GGG | + | chr3.4:91525873-91525892 | MS.gene37417:CDS | 50.0% | |
| GATTCCCACCAACCAACTCT+TGG | - | chr3.4:91526522-91526541 | None:intergenic | 50.0% | |
| GGCAGCAGCAGCATAATTCA+AGG | + | chr3.4:91526080-91526099 | MS.gene37417:CDS | 50.0% | |
| TCAAATTGATGTGCCCGTGG+AGG | + | chr3.4:91526573-91526592 | MS.gene37417:CDS | 50.0% | |
| TCTTGTCACGAGCAGCAAGA+GGG | + | chr3.4:91526346-91526365 | MS.gene37417:CDS | 50.0% | |
| TGAGAGGTTGAGAAGGGACA+GGG | + | chr3.4:91526027-91526046 | MS.gene37417:CDS | 50.0% | |
| TTCGCAAACTCCCATCGATC+CGG | - | chr3.4:91525869-91525888 | None:intergenic | 50.0% | |
| TTGAGAGGTTGAGAAGGGAC+AGG | + | chr3.4:91526026-91526045 | MS.gene37417:CDS | 50.0% | |
| ! | CTGAACCAAGAGTTGGTTGG+TGG | + | chr3.4:91526514-91526533 | MS.gene37417:CDS | 50.0% |
| ! | GCTCACTGCTAGTTCGAGTT+TGG | + | chr3.4:91526261-91526280 | MS.gene37417:CDS | 50.0% |
| !!! | AAGGGTTTTTAGCTGGGCAG+AGG | + | chr3.4:91525891-91525910 | MS.gene37417:CDS | 50.0% |
| !!! | GCGAACGAAGGGTTTTTAGC+TGG | + | chr3.4:91525884-91525903 | MS.gene37417:CDS | 50.0% |
| CGATGGGAGTTTGCGAACGA+AGG | + | chr3.4:91525872-91525891 | MS.gene37417:CDS | 55.0% | |
| CTCTTGTCACGAGCAGCAAG+AGG | + | chr3.4:91526345-91526364 | MS.gene37417:CDS | 55.0% | |
| GCTATGCAGCAAGAGACTGG+TGG | + | chr3.4:91525962-91525981 | MS.gene37417:CDS | 55.0% | |
| TGATGTGCCCGTGGAGGATT+TGG | + | chr3.4:91526579-91526598 | MS.gene37417:CDS | 55.0% | |
| TTTGGGTGATGCTGTGTGGG+AGG | + | chr3.4:91526486-91526505 | MS.gene37417:CDS | 55.0% | |
| GGCCGTGCCAATTGAGTCTG+TGG | + | chr3.4:91526315-91526334 | MS.gene37417:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91525254 | 91526669 | 91525254 | ID=MS.gene37417 |
| chr3.4 | mRNA | 91525254 | 91526669 | 91525254 | ID=MS.gene37417.t1;Parent=MS.gene37417 |
| chr3.4 | exon | 91525254 | 91525577 | 91525254 | ID=MS.gene37417.t1.exon1;Parent=MS.gene37417.t1 |
| chr3.4 | CDS | 91525254 | 91525577 | 91525254 | ID=cds.MS.gene37417.t1;Parent=MS.gene37417.t1 |
| chr3.4 | exon | 91525848 | 91526669 | 91525848 | ID=MS.gene37417.t1.exon2;Parent=MS.gene37417.t1 |
| chr3.4 | CDS | 91525848 | 91526669 | 91525848 | ID=cds.MS.gene37417.t1;Parent=MS.gene37417.t1 |
| Gene Sequence |
| Protein sequence |
