AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015008

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015008.t1 MTR_3g104550 96.850 381 9 1 1 381 1 378 0.0 759
MS.gene015008.t1 MTR_7g095680 56.522 253 102 2 8 252 8 260 8.69e-94 285
MS.gene015008.t1 MTR_1g102860 62.963 216 73 4 36 246 27 240 1.57e-91 278
MS.gene015008.t1 MTR_5g029680 55.357 224 84 4 36 247 21 240 2.19e-80 255
MS.gene015008.t1 MTR_1g071360 44.224 303 143 8 36 331 19 302 4.17e-73 231
MS.gene015008.t1 MTR_4g077970 54.808 208 86 2 48 247 11 218 4.78e-73 236
MS.gene015008.t1 MTR_1g071360 44.224 303 143 8 36 331 16 299 7.78e-73 231
MS.gene015008.t1 MTR_1g061170 45.520 279 146 4 35 310 35 310 2.90e-72 233
MS.gene015008.t1 MTR_6g086805 45.274 201 106 2 49 249 11 207 6.76e-53 179
MS.gene015008.t1 MTR_8g105780 45.876 194 98 2 49 235 22 215 4.87e-49 170
MS.gene015008.t1 MTR_8g087540 42.308 208 116 1 48 255 11 214 1.43e-48 169
MS.gene015008.t1 MTR_2g100680 39.604 202 117 2 47 247 29 226 2.90e-48 170
MS.gene015008.t1 MTR_2g100670 41.146 192 109 1 44 235 28 215 2.78e-46 160
MS.gene015008.t1 MTR_6g043060 42.365 203 107 5 49 248 22 217 5.32e-46 160
MS.gene015008.t1 MTR_8g083100 43.284 201 104 5 50 247 23 216 6.03e-46 164
MS.gene015008.t1 MTR_2g100670 40.933 193 110 1 43 235 135 323 2.24e-45 161
MS.gene015008.t1 MTR_2g017890 41.243 177 101 1 48 221 14 190 2.37e-43 155
MS.gene015008.t1 MTR_5g010680 62.766 94 35 0 47 140 22 115 5.77e-38 140
MS.gene015008.t1 MTR_7g091370 45.062 162 76 3 40 188 9 170 2.50e-37 135
MS.gene015008.t1 MTR_3g101870 56.757 111 43 1 43 153 18 123 9.81e-37 137
MS.gene015008.t1 MTR_5g017470 55.882 102 45 0 46 147 6 107 9.85e-37 135
MS.gene015008.t1 MTR_0020s0020 58.511 94 39 0 47 140 31 124 1.08e-34 130
MS.gene015008.t1 MTR_1g061170 39.024 205 119 4 109 310 14 215 1.29e-34 131
MS.gene015008.t1 MTR_1g100777 54.206 107 49 0 47 153 16 122 1.42e-34 129
MS.gene015008.t1 MTR_5g089170 60.638 94 37 0 47 140 23 116 7.95e-34 126
MS.gene015008.t1 MTR_4g088900 36.957 184 101 5 28 204 17 192 6.79e-29 112
MS.gene015008.t1 MTR_4g045757 50.746 67 33 0 40 106 5 71 1.00e-17 77.4
MS.gene015008.t1 MTR_5g047190 45.977 87 40 2 57 136 1 87 3.84e-15 70.9
MS.gene015008.t1 MTR_2g043940 30.000 180 98 7 85 255 7 167 1.31e-11 65.9
MS.gene015008.t1 MTR_6g044340 29.299 157 101 4 95 248 8 157 1.62e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015008.t1 AT2G26150 52.125 353 117 7 36 379 31 340 1.22e-120 353
MS.gene015008.t1 AT2G26150 52.125 353 117 7 36 379 31 340 1.22e-120 353
MS.gene015008.t1 AT3G22830 43.978 357 159 8 36 359 48 396 4.72e-88 272
MS.gene015008.t1 AT3G51910 55.357 224 79 3 39 256 19 227 5.32e-77 239
MS.gene015008.t1 AT4G17750 51.570 223 91 2 47 252 50 272 3.57e-76 244
MS.gene015008.t1 AT5G16820 50.655 229 97 3 27 244 10 233 1.59e-74 239
MS.gene015008.t1 AT5G16820 50.655 229 97 3 27 244 10 233 1.59e-74 239
MS.gene015008.t1 AT1G32330 46.931 277 122 7 15 274 3 271 1.96e-74 239
MS.gene015008.t1 AT1G32330 46.931 277 122 7 15 274 3 271 2.51e-74 239
MS.gene015008.t1 AT3G02990 44.286 280 140 6 48 318 22 294 1.78e-73 236
MS.gene015008.t1 AT3G63350 43.175 315 119 7 25 331 4 266 1.17e-69 220
MS.gene015008.t1 AT5G43840 43.011 279 125 5 36 297 6 267 1.15e-68 218
MS.gene015008.t1 AT2G26150 44.484 281 102 8 109 379 49 285 1.20e-67 216
MS.gene015008.t1 AT2G26150 44.484 281 102 8 109 379 49 285 1.20e-67 216
MS.gene015008.t1 AT5G03720 45.815 227 111 4 17 240 24 241 1.32e-60 201
MS.gene015008.t1 AT5G03720 45.815 227 111 4 17 240 24 241 1.32e-60 201
MS.gene015008.t1 AT1G67970 47.872 188 97 1 49 235 19 206 4.66e-56 188
MS.gene015008.t1 AT5G54070 42.857 217 109 3 42 257 63 265 1.32e-55 186
MS.gene015008.t1 AT4G13980 40.201 199 114 2 50 247 24 218 3.35e-48 170
MS.gene015008.t1 AT3G24520 45.411 207 86 5 49 251 17 200 1.28e-47 165
MS.gene015008.t1 AT5G45710 32.095 296 182 6 48 333 12 298 1.63e-37 139
MS.gene015008.t1 AT5G45710 32.095 296 182 6 48 333 12 298 1.63e-37 139
MS.gene015008.t1 AT4G36990 52.632 114 48 1 47 160 12 119 1.34e-36 134
MS.gene015008.t1 AT1G46264 38.191 199 70 3 39 187 24 219 2.44e-36 135
MS.gene015008.t1 AT2G41690 48.889 135 52 2 6 140 14 131 6.09e-36 132
MS.gene015008.t1 AT4G18880 44.000 175 97 1 48 221 14 188 1.23e-35 135
MS.gene015008.t1 AT5G62020 55.882 102 45 0 47 148 21 122 1.56e-35 132
MS.gene015008.t1 AT4G11660 58.511 94 39 0 47 140 57 150 2.08e-34 131
MS.gene015008.t1 AT4G18870 34.711 121 75 1 49 165 146 266 1.43e-20 91.3
MS.gene015008.t1 AT4G18870 43.678 87 48 1 50 136 14 99 6.75e-18 83.6
MS.gene015008.t1 AT1G77570 36.667 90 54 2 50 136 27 116 6.01e-13 66.2

Find 82 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGCTTGTATTGAATT+AGG 0.180277 3.2:+86383746 MS.gene015008:CDS
GAGAATTTGCAAAATGATTC+TGG 0.205764 3.2:+86384049 MS.gene015008:CDS
CTCGTAATAGCTTTGTTGTT+TGG 0.240497 3.2:+86383236 MS.gene015008:CDS
AAGTGGTAATGAGAGTAATT+TGG 0.259305 3.2:+86384234 MS.gene015008:CDS
TTCAACAACATCAAAGGTTT+TGG 0.271463 3.2:-86383176 None:intergenic
TGCAATCCTTCCATTGGTTT+TGG 0.278910 3.2:-86383127 None:intergenic
CCACTGATTCCATTGTTTCA+TGG 0.288131 3.2:+86383206 MS.gene015008:CDS
TCGTAATAGCTTTGTTGTTT+GGG 0.292309 3.2:+86383237 MS.gene015008:CDS
AACTCTTCATCTTCCTCTTC+GGG 0.307939 3.2:+86383091 MS.gene015008:CDS
TGTATTGAATTAGGGGAGTA+TGG 0.320828 3.2:+86383755 MS.gene015008:CDS
TAACTCTTCATCTTCCTCTT+CGG 0.322245 3.2:+86383090 MS.gene015008:CDS
TGGTAGAAAAGAATAATAAT+TGG 0.326854 3.2:+86384365 MS.gene015008:CDS
GCAGAACCTTGTTGATCAAA+TGG 0.360342 3.2:+86384399 MS.gene015008:CDS
GCTCACTGCTAGTTCGAGTT+TGG 0.362423 3.2:+86384027 MS.gene015008:CDS
TTAGCATATGTCAGTGTTGT+TGG 0.370710 3.2:+86383055 MS.gene015008:CDS
TGATGTGCCCGTGGAGGATT+TGG 0.372993 3.2:+86384345 MS.gene015008:CDS
GTGGTGCTTGTATTGAATTA+GGG 0.384837 3.2:+86383747 MS.gene015008:CDS
TGAATCAAGCAGTGAAGTTA+AGG 0.388539 3.2:+86384186 MS.gene015008:CDS
AAAATGATTCTGGAGCTATA+AGG 0.395328 3.2:+86384059 MS.gene015008:CDS
AATGGAAGGATTGCACGAAA+TGG 0.400329 3.2:+86383135 MS.gene015008:CDS
AGTGGTAATGAGAGTAATTT+GGG 0.400460 3.2:+86384235 MS.gene015008:CDS
CAGAACCTTGTTGATCAAAT+GGG 0.416106 3.2:+86384400 MS.gene015008:CDS
AAATGATTCTGGAGCTATAA+GGG 0.430722 3.2:+86384060 MS.gene015008:CDS
TTGAGAGGTTGAGAAGGGAT+AGG 0.448330 3.2:+86383792 MS.gene015008:CDS
TTAGGGGAGTATGGTCTTGA+AGG 0.455498 3.2:+86383764 MS.gene015008:CDS
TGAGATTGAGAGGTTGAGAA+GGG 0.457785 3.2:+86383787 MS.gene015008:CDS
GAAGGGAATTAGAGTGAAAG+AGG 0.460183 3.2:+86383024 MS.gene015008:CDS
TGAGAGGTTGAGAAGGGATA+GGG 0.461358 3.2:+86383793 MS.gene015008:CDS
GTGAGATTGAGAGGTTGAGA+AGG 0.465030 3.2:+86383786 MS.gene015008:CDS
GATTCCCACCAACCAACTCT+TGG 0.469023 3.2:-86384285 None:intergenic
ATGGAAGGATTGCACGAAAT+GGG 0.473051 3.2:+86383136 MS.gene015008:CDS
CAAGCTATGCAGCAAGAAAC+CGG 0.474185 3.2:+86383725 MS.gene015008:CDS
CCAATCACAACTTCATCCTC+TGG 0.476628 3.2:-86384307 None:intergenic
TAATCAACCACAGACTCAAT+TGG 0.480632 3.2:-86384088 None:intergenic
ATTTCGTGCAATCCTTCCAT+TGG 0.481224 3.2:-86383133 None:intergenic
GCGTTGAAATGAAGCGAAAA+CGG 0.487154 3.2:+86384002 MS.gene015008:CDS
GGCAGCAGCAACATAATTCA+AGG 0.499641 3.2:+86383846 MS.gene015008:CDS
CGATGGGAGTTTGCGAACGA+AGG 0.501252 3.2:+86383638 MS.gene015008:CDS
AAGGGAGCAATTGTCTGCTA+TGG 0.507177 3.2:+86383865 MS.gene015008:CDS
TTCGCAAACTCCCATCGATC+CGG 0.510214 3.2:-86383632 None:intergenic
GACTACTATTGAGTCTGAGA+TGG 0.532873 3.2:+86384138 MS.gene015008:CDS
CTGAACCAAGAGTTGGTTGG+TGG 0.536158 3.2:+86384280 MS.gene015008:CDS
CAAAACCCATTTGATCAACA+AGG 0.537986 3.2:-86384405 None:intergenic
AAAAGTTGATCCGGATCGAT+GGG 0.538609 3.2:+86383622 MS.gene015008:CDS
GAAAAGTTGATCCGGATCGA+TGG 0.539674 3.2:+86383621 MS.gene015008:CDS
GATGGGAGTTTGCGAACGAA+GGG 0.539714 3.2:+86383639 MS.gene015008:CDS
AATTGTCTGCTATGGAAGCT+AGG 0.540355 3.2:+86383873 MS.gene015008:CDS
TGGCTGAAATTGTGAAATTG+AGG 0.541370 3.2:+86383825 MS.gene015008:CDS
GGATTTACTGAACCAAGAGT+TGG 0.543897 3.2:+86384273 MS.gene015008:CDS
TTTGGGTGATGCTGTGTGGG+AGG 0.547697 3.2:+86384252 MS.gene015008:CDS
CCAGAGGATGAAGTTGTGAT+TGG 0.548861 3.2:+86384307 MS.gene015008:CDS
TAATTTGGGTGATGCTGTGT+GGG 0.557732 3.2:+86384249 MS.gene015008:CDS
TGGATCTTCAACAACATCAA+AGG 0.559140 3.2:-86383182 None:intergenic
AAATTACTCTCATTACCACT+TGG 0.571022 3.2:-86384232 None:intergenic
AAATCTTACACCAAAACCAA+TGG 0.575232 3.2:+86383117 MS.gene015008:CDS
GTCTTGAAGGTGAGATTGAG+AGG 0.580331 3.2:+86383777 MS.gene015008:CDS
GGCTGTGCCAATTGAGTCTG+TGG 0.580769 3.2:+86384081 MS.gene015008:CDS
CTCTTGTCAAGAACAGCAAG+AGG 0.589029 3.2:+86384111 MS.gene015008:CDS
CCATGAAACAATGGAATCAG+TGG 0.596228 3.2:-86383206 None:intergenic
TAATTCAATACAAGCACCAC+CGG 0.599154 3.2:-86383744 None:intergenic
GAAACAATGGAATCAGTGGA+TGG 0.602123 3.2:-86383202 None:intergenic
TGGTGCTTGTATTGAATTAG+GGG 0.604898 3.2:+86383748 MS.gene015008:CDS
GCATCAACTAACTCAATGAA+GGG 0.610881 3.2:+86383007 None:intergenic
TGAACCAAGAGTTGGTTGGT+GGG 0.615910 3.2:+86384281 MS.gene015008:CDS
GATTCCATTGTTTCATGGAG+CGG 0.618876 3.2:+86383211 MS.gene015008:CDS
AAAGAATAATAATTGGACTG+TGG 0.619356 3.2:+86384372 MS.gene015008:CDS
TGTAAGATTTGAACCCGAAG+AGG 0.623342 3.2:-86383104 None:intergenic
TTCTCAAATTGATGTGCCCG+TGG 0.628790 3.2:+86384336 MS.gene015008:CDS
GTAACGAGGTAAAATAGCAG+TGG 0.630092 3.2:-86383275 None:intergenic
AGCTCCGCTCCATGAAACAA+TGG 0.631104 3.2:-86383215 None:intergenic
CTTACACCAAAACCAATGGA+AGG 0.637289 3.2:+86383121 MS.gene015008:CDS
TCAAATTGATGTGCCCGTGG+AGG 0.639975 3.2:+86384339 MS.gene015008:CDS
GCAGCAGCAACATAATTCAA+GGG 0.642794 3.2:+86383847 MS.gene015008:CDS
TTACTGAACCAAGAGTTGGT+TGG 0.648299 3.2:+86384277 MS.gene015008:CDS
TCTTGTCAAGAACAGCAAGA+GGG 0.653894 3.2:+86384112 MS.gene015008:CDS
GCACAGAATAGAGAGTTGAA+AGG 0.656703 3.2:+86383980 MS.gene015008:CDS
GTAATTTGGGTGATGCTGTG+TGG 0.674970 3.2:+86384248 MS.gene015008:CDS
TTGAAATGAAGCGAAAACGG+AGG 0.685238 3.2:+86384005 MS.gene015008:CDS
GTTGGTTGGTGGGAATCCAG+AGG 0.687367 3.2:+86384291 MS.gene015008:CDS
GCATTGAGTTCAGTTCCAAG+TGG 0.687922 3.2:+86384217 MS.gene015008:CDS
TTACTGTGTTTGAAGTAACG+AGG 0.690403 3.2:-86383289 None:intergenic
GCTATGCAGCAAGAAACCGG+TGG 0.786983 3.2:+86383728 MS.gene015008:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATAGTTAACTTACAT+AGG - chr3.2:86383344-86383363 None:intergenic 20.0%
!! TGGTAGAAAAGAATAATAAT+TGG + chr3.2:86384365-86384384 MS.gene015008:CDS 20.0%
! AAAGAATAATAATTGGACTG+TGG + chr3.2:86384372-86384391 MS.gene015008:CDS 25.0%
! TTGAATGTAATCATATGTGT+CGG - chr3.2:86383477-86383496 None:intergenic 25.0%
!! AATTTTTGTGTTCATATGCA+GGG + chr3.2:86383593-86383612 MS.gene015008:intron 25.0%
!! TCAATCTTTTATACAGCAAT+TGG + chr3.2:86383958-86383977 MS.gene015008:CDS 25.0%
AAATCTTACACCAAAACCAA+TGG + chr3.2:86383117-86383136 MS.gene015008:CDS 30.0%
AAATTACTCTCATTACCACT+TGG - chr3.2:86384235-86384254 None:intergenic 30.0%
AAGAACAAATTCACAAACAC+CGG - chr3.2:86383530-86383549 None:intergenic 30.0%
GAGAATTTGCAAAATGATTC+TGG + chr3.2:86384049-86384068 MS.gene015008:CDS 30.0%
! AAGTGGTAATGAGAGTAATT+TGG + chr3.2:86384234-86384253 MS.gene015008:CDS 30.0%
! AGTGGTAATGAGAGTAATTT+GGG + chr3.2:86384235-86384254 MS.gene015008:CDS 30.0%
! GAATTTTTGTGTTCATATGC+AGG + chr3.2:86383592-86383611 MS.gene015008:intron 30.0%
! TTCAACAACATCAAAGGTTT+TGG - chr3.2:86383179-86383198 None:intergenic 30.0%
!! AAAATGATTCTGGAGCTATA+AGG + chr3.2:86384059-86384078 MS.gene015008:CDS 30.0%
!! AAATGATTCTGGAGCTATAA+GGG + chr3.2:86384060-86384079 MS.gene015008:CDS 30.0%
!! TCGTAATAGCTTTGTTGTTT+GGG + chr3.2:86383237-86383256 MS.gene015008:CDS 30.0%
CAAAACCCATTTGATCAACA+AGG - chr3.2:86384408-86384427 None:intergenic 35.0%
CAGAACCTTGTTGATCAAAT+GGG + chr3.2:86384400-86384419 MS.gene015008:CDS 35.0%
GTGGTGCTTGTATTGAATTA+GGG + chr3.2:86383747-86383766 MS.gene015008:CDS 35.0%
TAACTCTTCATCTTCCTCTT+CGG + chr3.2:86383090-86383109 MS.gene015008:CDS 35.0%
TAATCAACCACAGACTCAAT+TGG - chr3.2:86384091-86384110 None:intergenic 35.0%
TAATTCAATACAAGCACCAC+CGG - chr3.2:86383747-86383766 None:intergenic 35.0%
TGAATCAAGCAGTGAAGTTA+AGG + chr3.2:86384186-86384205 MS.gene015008:CDS 35.0%
TGGATCTTCAACAACATCAA+AGG - chr3.2:86383185-86383204 None:intergenic 35.0%
TGGCTGAAATTGTGAAATTG+AGG + chr3.2:86383825-86383844 MS.gene015008:CDS 35.0%
TGGTGCTTGTATTGAATTAG+GGG + chr3.2:86383748-86383767 MS.gene015008:CDS 35.0%
TGTATTGAATTAGGGGAGTA+TGG + chr3.2:86383755-86383774 MS.gene015008:CDS 35.0%
TTAGCATATGTCAGTGTTGT+TGG + chr3.2:86383055-86383074 MS.gene015008:CDS 35.0%
! GATTACTAAGTGCTTTTGCA+AGG - chr3.2:86383940-86383959 None:intergenic 35.0%
! TTACTGTGTTTGAAGTAACG+AGG - chr3.2:86383292-86383311 None:intergenic 35.0%
!! CTCGTAATAGCTTTGTTGTT+TGG + chr3.2:86383236-86383255 MS.gene015008:CDS 35.0%
!! TATGTCAGTGTTGATGTATC+CGG + chr3.2:86383508-86383527 MS.gene015008:intron 35.0%
!! TCAAAGGTTTTGGTGAGAAA+TGG - chr3.2:86383169-86383188 None:intergenic 35.0%
!!! GGGTTTTAGAAAAGTTGATC+CGG + chr3.2:86383613-86383632 MS.gene015008:intron 35.0%
AACTCTTCATCTTCCTCTTC+GGG + chr3.2:86383091-86383110 MS.gene015008:CDS 40.0%
AATGGAAGGATTGCACGAAA+TGG + chr3.2:86383135-86383154 MS.gene015008:CDS 40.0%
AATTGTCTGCTATGGAAGCT+AGG + chr3.2:86383873-86383892 MS.gene015008:CDS 40.0%
ATGGAAGGATTGCACGAAAT+GGG + chr3.2:86383136-86383155 MS.gene015008:CDS 40.0%
ATTTCGTGCAATCCTTCCAT+TGG - chr3.2:86383136-86383155 None:intergenic 40.0%
CCATGAAACAATGGAATCAG+TGG - chr3.2:86383209-86383228 None:intergenic 40.0%
CTTACACCAAAACCAATGGA+AGG + chr3.2:86383121-86383140 MS.gene015008:CDS 40.0%
GAAACAATGGAATCAGTGGA+TGG - chr3.2:86383205-86383224 None:intergenic 40.0%
GAAGGGAATTAGAGTGAAAG+AGG + chr3.2:86383024-86383043 MS.gene015008:CDS 40.0%
GACTACTATTGAGTCTGAGA+TGG + chr3.2:86384138-86384157 MS.gene015008:CDS 40.0%
GATTCCATTGTTTCATGGAG+CGG + chr3.2:86383211-86383230 MS.gene015008:CDS 40.0%
GCACAGAATAGAGAGTTGAA+AGG + chr3.2:86383980-86383999 MS.gene015008:CDS 40.0%
GCAGAACCTTGTTGATCAAA+TGG + chr3.2:86384399-86384418 MS.gene015008:CDS 40.0%
GCAGCAGCAACATAATTCAA+GGG + chr3.2:86383847-86383866 MS.gene015008:CDS 40.0%
GCGTTGAAATGAAGCGAAAA+CGG + chr3.2:86384002-86384021 MS.gene015008:CDS 40.0%
GGATTTACTGAACCAAGAGT+TGG + chr3.2:86384273-86384292 MS.gene015008:CDS 40.0%
GGTGGTGCTTGTATTGAATT+AGG + chr3.2:86383746-86383765 MS.gene015008:CDS 40.0%
GTAACGAGGTAAAATAGCAG+TGG - chr3.2:86383278-86383297 None:intergenic 40.0%
TAATTTGGGTGATGCTGTGT+GGG + chr3.2:86384249-86384268 MS.gene015008:CDS 40.0%
TCTTGTCAAGAACAGCAAGA+GGG + chr3.2:86384112-86384131 MS.gene015008:CDS 40.0%
TGAGATTGAGAGGTTGAGAA+GGG + chr3.2:86383787-86383806 MS.gene015008:CDS 40.0%
TGTAAGATTTGAACCCGAAG+AGG - chr3.2:86383107-86383126 None:intergenic 40.0%
TTGAAATGAAGCGAAAACGG+AGG + chr3.2:86384005-86384024 MS.gene015008:CDS 40.0%
! AAAAGTTGATCCGGATCGAT+GGG + chr3.2:86383622-86383641 MS.gene015008:CDS 40.0%
! CTTTTCTACCAAATCCTCCA+CGG - chr3.2:86384356-86384375 None:intergenic 40.0%
! TTACTGAACCAAGAGTTGGT+TGG + chr3.2:86384277-86384296 MS.gene015008:CDS 40.0%
! TTTTCTACCAAATCCTCCAC+GGG - chr3.2:86384355-86384374 None:intergenic 40.0%
!! AAGGGATAGGGCTGTTTTAA+TGG + chr3.2:86383805-86383824 MS.gene015008:CDS 40.0%
!! AAGGTTTTGGTGAGAAATGG+AGG - chr3.2:86383166-86383185 None:intergenic 40.0%
!! CCACTGATTCCATTGTTTCA+TGG + chr3.2:86383206-86383225 MS.gene015008:CDS 40.0%
!!! TGCAATCCTTCCATTGGTTT+TGG - chr3.2:86383130-86383149 None:intergenic 40.0%
AAGGGAGCAATTGTCTGCTA+TGG + chr3.2:86383865-86383884 MS.gene015008:CDS 45.0%
CAAGCTATGCAGCAAGAAAC+CGG + chr3.2:86383725-86383744 MS.gene015008:CDS 45.0%
CCAATCACAACTTCATCCTC+TGG - chr3.2:86384310-86384329 None:intergenic 45.0%
CCAGAGGATGAAGTTGTGAT+TGG + chr3.2:86384307-86384326 MS.gene015008:CDS 45.0%
CTCTTGTCAAGAACAGCAAG+AGG + chr3.2:86384111-86384130 MS.gene015008:CDS 45.0%
GCATTGAGTTCAGTTCCAAG+TGG + chr3.2:86384217-86384236 MS.gene015008:CDS 45.0%
GGCAGCAGCAACATAATTCA+AGG + chr3.2:86383846-86383865 MS.gene015008:CDS 45.0%
GTAATTTGGGTGATGCTGTG+TGG + chr3.2:86384248-86384267 MS.gene015008:CDS 45.0%
GTCTTGAAGGTGAGATTGAG+AGG + chr3.2:86383777-86383796 MS.gene015008:CDS 45.0%
GTGAGATTGAGAGGTTGAGA+AGG + chr3.2:86383786-86383805 MS.gene015008:CDS 45.0%
TGAGAGGTTGAGAAGGGATA+GGG + chr3.2:86383793-86383812 MS.gene015008:CDS 45.0%
TTCTCAAATTGATGTGCCCG+TGG + chr3.2:86384336-86384355 MS.gene015008:CDS 45.0%
TTGAGAGGTTGAGAAGGGAT+AGG + chr3.2:86383792-86383811 MS.gene015008:CDS 45.0%
! GAAAAGTTGATCCGGATCGA+TGG + chr3.2:86383621-86383640 MS.gene015008:CDS 45.0%
! TGAACCAAGAGTTGGTTGGT+GGG + chr3.2:86384281-86384300 MS.gene015008:CDS 45.0%
! TTAGGGGAGTATGGTCTTGA+AGG + chr3.2:86383764-86383783 MS.gene015008:CDS 45.0%
!! GTTTTGGTGAGAAATGGAGG+TGG - chr3.2:86383163-86383182 None:intergenic 45.0%
!!! CGAACGAAGGGTTTTTAGCT+GGG + chr3.2:86383651-86383670 MS.gene015008:CDS 45.0%
AGCTCCGCTCCATGAAACAA+TGG - chr3.2:86383218-86383237 None:intergenic 50.0%
GATGGGAGTTTGCGAACGAA+GGG + chr3.2:86383639-86383658 MS.gene015008:CDS 50.0%
GATTCCCACCAACCAACTCT+TGG - chr3.2:86384288-86384307 None:intergenic 50.0%
TCAAATTGATGTGCCCGTGG+AGG + chr3.2:86384339-86384358 MS.gene015008:CDS 50.0%
TTCGCAAACTCCCATCGATC+CGG - chr3.2:86383635-86383654 None:intergenic 50.0%
! CTGAACCAAGAGTTGGTTGG+TGG + chr3.2:86384280-86384299 MS.gene015008:CDS 50.0%
! GCTCACTGCTAGTTCGAGTT+TGG + chr3.2:86384027-86384046 MS.gene015008:CDS 50.0%
!!! GCGAACGAAGGGTTTTTAGC+TGG + chr3.2:86383650-86383669 MS.gene015008:CDS 50.0%
CGATGGGAGTTTGCGAACGA+AGG + chr3.2:86383638-86383657 MS.gene015008:CDS 55.0%
GCTATGCAGCAAGAAACCGG+TGG + chr3.2:86383728-86383747 MS.gene015008:CDS 55.0%
GGCTGTGCCAATTGAGTCTG+TGG + chr3.2:86384081-86384100 MS.gene015008:CDS 55.0%
TGATGTGCCCGTGGAGGATT+TGG + chr3.2:86384345-86384364 MS.gene015008:CDS 55.0%
TTTGGGTGATGCTGTGTGGG+AGG + chr3.2:86384252-86384271 MS.gene015008:CDS 55.0%
!! GTTGGTTGGTGGGAATCCAG+AGG + chr3.2:86384291-86384310 MS.gene015008:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 86383022 86384435 86383022 ID=MS.gene015008
chr3.2 mRNA 86383022 86384435 86383022 ID=MS.gene015008.t1;Parent=MS.gene015008
chr3.2 exon 86383022 86383345 86383022 ID=MS.gene015008.t1.exon1;Parent=MS.gene015008.t1
chr3.2 CDS 86383022 86383345 86383022 ID=cds.MS.gene015008.t1;Parent=MS.gene015008.t1
chr3.2 exon 86383614 86384435 86383614 ID=MS.gene015008.t1.exon2;Parent=MS.gene015008.t1
chr3.2 CDS 86383614 86384435 86383614 ID=cds.MS.gene015008.t1;Parent=MS.gene015008.t1
Gene Sequence

>MS.gene015008

ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCATGTAACTCTTCATCTTCCTCTTCGGGTTCAAATCTTACACCAAAACCAATGGAAGGATTGCACGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCGGAGCTCGTAATAGCTTTGTTGTTTGGGATCTTCACAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGACAACTCAATACCTATGTAAGTTAACTATTACTTTTTGATTTTATTTCATTGTTGTTAAAATTAGTTCAATATTGTTCAACTTAGATACGAGTTAGTTATAATTAGTTGAAAATTTGTTATTATTATTAGTTAGCTGATTTAGACCGACACATATGATTACATTCAATTATTTTGATGTATGTCAGTGTTGATGTATCCGGTGTTTGTGAATTTGTTCTTGCTTATCAAACTTAAGATGTTTTTATGTTCAATTTGTTGAGTGAATTTTTGTGTTCATATGCAGGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTAGCTGGGCAGAGAAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTGACACAATCACAAGCTATGCAGCAAGAAACCGGTGGTGCTTGTATTGAATTAGGGGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGATAGGGCTGTTTTAATGGCTGAAATTGTGAAATTGAGGCAGCAGCAACATAATTCAAGGGAGCAATTGTCTGCTATGGAAGCTAGGTTATTGATTACTGAGAAGAAACATCAACAGATGATGAATTTCCTTGCAAAAGCACTTAGTAATCAATCTTTTATACAGCAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAAAATGATTCTGGAGCTATAAGGGCTGTGCCAATTGAGTCTGTGGTTGATTACTCTTGTCAAGAACAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTACACTGCATTGAGTTCAGTTCCAAGTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAGGATGAAGTTGTGATTGGTGATTTTTCTCAAATTGATGTGCCCGTGGAGGATTTGGTAGAAAAGAATAATAATTGGACTGTGGATTTGCAGAACCTTGTTGATCAAATGGGTTTTGAACCTTAG
Protein sequence

>MS.gene015008.t1

MKGIRVKEEETLAYVSVVGSTSCNSSSSSSGSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQAMQQETGGACIELGEYGLEGEIERLRRDRAVLMAEIVKLRQQQHNSREQLSAMEARLLITEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASSSLENLQNDSGAIRAVPIESVVDYSCQEQQEGLTTIESEMETLLSAYDNESSSEVKDYTALSSVPSGNESNLGDAVWEDLLNQELVGGNPEDEVVIGDFSQIDVPVEDLVEKNNNWTVDLQNLVDQMGFEP