Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004694.t1 | XP_013468608.1 | 98 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.00E+00 | 1980.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004694.t1 | Q9HCG7 | 40.9 | 888 | 412 | 17 | 56 | 933 | 106 | 890 | 1.9e-176 | 621.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004694.t1 | A0A072VX24 | 98.0 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.0e+00 | 1980.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042041 | MS.gene004694 | PPI |
| MS.gene95043 | MS.gene004694 | PPI |
| MS.gene43487 | MS.gene004694 | PPI |
| MS.gene012798 | MS.gene004694 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004694.t1 | MTR_1g072720 | 97.951 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.0 | 2005 |
| MS.gene004694.t1 | MTR_1g072720 | 97.927 | 965 | 20 | 0 | 1 | 965 | 7 | 971 | 0.0 | 1985 |
| MS.gene004694.t1 | MTR_4g134760 | 51.848 | 920 | 383 | 14 | 31 | 937 | 31 | 903 | 0.0 | 931 |
| MS.gene004694.t1 | MTR_4g134760 | 52.680 | 765 | 310 | 10 | 184 | 937 | 1 | 724 | 0.0 | 781 |
| MS.gene004694.t1 | MTR_4g134760 | 51.416 | 671 | 275 | 9 | 278 | 937 | 3 | 633 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004694.t1 | AT3G24180 | 75.079 | 955 | 205 | 5 | 1 | 955 | 1 | 922 | 0.0 | 1466 |
| MS.gene004694.t1 | AT3G24180 | 75.079 | 955 | 205 | 5 | 1 | 955 | 1 | 922 | 0.0 | 1466 |
| MS.gene004694.t1 | AT5G49900 | 52.136 | 913 | 387 | 9 | 30 | 934 | 23 | 893 | 0.0 | 941 |
| MS.gene004694.t1 | AT5G49900 | 52.136 | 913 | 387 | 9 | 30 | 934 | 23 | 893 | 0.0 | 941 |
| MS.gene004694.t1 | AT1G33700 | 49.672 | 916 | 413 | 11 | 30 | 937 | 13 | 888 | 0.0 | 878 |
| MS.gene004694.t1 | AT1G33700 | 49.672 | 916 | 413 | 11 | 30 | 937 | 13 | 888 | 0.0 | 878 |
| MS.gene004694.t1 | AT1G33700 | 49.672 | 916 | 413 | 11 | 30 | 937 | 13 | 888 | 0.0 | 878 |
| MS.gene004694.t1 | AT1G33700 | 48.919 | 879 | 401 | 11 | 30 | 900 | 13 | 851 | 0.0 | 826 |
| MS.gene004694.t1 | AT5G49900 | 52.474 | 667 | 269 | 7 | 278 | 934 | 3 | 631 | 0.0 | 671 |
| MS.gene004694.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 3.54e-137 | 435 |
| MS.gene004694.t1 | AT4G10060 | 47.752 | 467 | 228 | 8 | 22 | 481 | 8 | 465 | 2.51e-136 | 433 |
| MS.gene004694.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 3.54e-137 | 435 |
| MS.gene004694.t1 | AT4G10060 | 47.752 | 467 | 228 | 8 | 22 | 481 | 8 | 465 | 2.51e-136 | 433 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTGAAGTACAAATTT+TGG | 0.115897 | 1.1:-54856897 | None:intergenic |
| TGGGGAACTCGTAAGGTTTA+TGG | 0.186018 | 1.1:+54856783 | MS.gene004694:CDS |
| TGGGGCTGTCCCACATGATT+TGG | 0.240059 | 1.1:+54856803 | MS.gene004694:CDS |
| GGGGCTGTCCCACATGATTT+GGG | 0.240329 | 1.1:+54856804 | MS.gene004694:CDS |
| GATCGGGAAAATTTCTCTTC+TGG | 0.243513 | 1.1:+54854693 | MS.gene004694:CDS |
| ATATGAGGCCACTGTCAATT+TGG | 0.255376 | 1.1:+54858068 | MS.gene004694:CDS |
| GCAACAGGTGATTTGCAATT+TGG | 0.258666 | 1.1:+54856933 | MS.gene004694:CDS |
| GTGCTTACTGTGGTGGTCTT+TGG | 0.276640 | 1.1:+54857087 | MS.gene004694:CDS |
| TCTAAATTCTTTAAGAAGAT+TGG | 0.284924 | 1.1:-54847483 | None:intergenic |
| TTCAATGTGATGAAAGTTAA+AGG | 0.285157 | 1.1:+54857383 | MS.gene004694:CDS |
| TGGAAGGAGAGTAAAGTTTC+TGG | 0.290455 | 1.1:+54856749 | MS.gene004694:CDS |
| AGTTTCTGGCAGAGGGAAAC+TGG | 0.296329 | 1.1:+54856763 | MS.gene004694:CDS |
| AGAGATATATCCCATGAAAA+TGG | 0.299499 | 1.1:+54856483 | MS.gene004694:CDS |
| CCACTTTAGCTTCAGTTATT+CGG | 0.312015 | 1.1:-54856365 | None:intergenic |
| CTTCTTCTCCAAGCTTGTTC+AGG | 0.312960 | 1.1:-54847446 | None:intergenic |
| TCCAGGTGATGAGGGCATGC+TGG | 0.316468 | 1.1:-54854718 | None:intergenic |
| TTACCGCCCAAGTAAATAAA+AGG | 0.316621 | 1.1:-54851361 | None:intergenic |
| TATGAGGCCACTGTCAATTT+GGG | 0.322102 | 1.1:+54858069 | MS.gene004694:CDS |
| GGGGAACTCGTAAGGTTTAT+GGG | 0.328245 | 1.1:+54856784 | MS.gene004694:CDS |
| GGCAGAATGGGTGCTGTAAA+TGG | 0.328598 | 1.1:+54857407 | MS.gene004694:CDS |
| TTATGTAATCCTCCTCTAAC+AGG | 0.337687 | 1.1:-54858172 | None:intergenic |
| TTGAAATTCCAGGTTCGATT+AGG | 0.338785 | 1.1:+54847701 | MS.gene004694:intron |
| CCAGAGGCATTTACAATTGA+TGG | 0.341869 | 1.1:+54858025 | MS.gene004694:CDS |
| GGCCCCTAAAATTAACTTCA+TGG | 0.344736 | 1.1:+54858132 | MS.gene004694:CDS |
| AAAAGGAATGTGGACTAAAA+TGG | 0.348084 | 1.1:+54854522 | MS.gene004694:CDS |
| TCATGGGGATGGAATCTAAA+TGG | 0.351315 | 1.1:+54850238 | MS.gene004694:CDS |
| TAACCCAAAATTTGTACTTC+AGG | 0.352766 | 1.1:+54856893 | MS.gene004694:CDS |
| GAACTCTACTTTCTTGTTGC+TGG | 0.357509 | 1.1:+54856124 | MS.gene004694:CDS |
| TAAACTAAGAATTACCATTC+TGG | 0.363223 | 1.1:-54855491 | None:intergenic |
| TACGCATGTGGTCATATGTT+AGG | 0.366133 | 1.1:+54847726 | MS.gene004694:CDS |
| TTGTTGCTGGAGGAACAATT+TGG | 0.366760 | 1.1:+54856137 | MS.gene004694:CDS |
| CCTTTCACAAACTTCACTTT+CGG | 0.380322 | 1.1:-54854828 | None:intergenic |
| GGGGCCTCAAGTACTGCCTT+TGG | 0.382148 | 1.1:-54858115 | None:intergenic |
| CATGTATCATATGTTTGATC+AGG | 0.387198 | 1.1:-54857047 | None:intergenic |
| GATCTTGTGCAGAATTCTAT+TGG | 0.388602 | 1.1:+54851461 | MS.gene004694:intron |
| AGGGGTTCCACTTGGAGGGA+TGG | 0.398673 | 1.1:+54847972 | MS.gene004694:CDS |
| GTATGCAGTCTCGAGAGATA+TGG | 0.400049 | 1.1:+54857462 | MS.gene004694:CDS |
| AGACAATGGCAAATTATTCC+TGG | 0.403958 | 1.1:+54848217 | MS.gene004694:CDS |
| CCAGGTGATGAGGGCATGCT+GGG | 0.407317 | 1.1:-54854717 | None:intergenic |
| CCGAATAACTGAAGCTAAAG+TGG | 0.411606 | 1.1:+54856365 | MS.gene004694:CDS |
| AGCTTCTCTACGAGAGTGTT+GGG | 0.413362 | 1.1:-54858327 | None:intergenic |
| TGTAATTATGTGGTATGAAA+GGG | 0.414470 | 1.1:-54850440 | None:intergenic |
| ATCCACCTATCTCCTGTTAG+AGG | 0.417590 | 1.1:+54858160 | MS.gene004694:CDS |
| TAGCAGGAAAGCTGATGATC+AGG | 0.417934 | 1.1:+54850207 | MS.gene004694:CDS |
| CCCAGCATGCCCTCATCACC+TGG | 0.423292 | 1.1:+54854717 | MS.gene004694:CDS |
| AGCCAATTGATCGGCTTGAA+TGG | 0.427786 | 1.1:-54857276 | None:intergenic |
| TCCGTTTCTGAGAGTATTCA+CGG | 0.428112 | 1.1:-54856508 | None:intergenic |
| GGGGTTCCACTTGGAGGGAT+GGG | 0.431136 | 1.1:+54847973 | MS.gene004694:CDS |
| ATCCATTCAAGCCGATCAAT+TGG | 0.432522 | 1.1:+54857274 | MS.gene004694:CDS |
| ATGGCAGGATCCTATTCTTA+AGG | 0.433320 | 1.1:+54855457 | MS.gene004694:CDS |
| GGAGGATTACATAAAGAAAC+AGG | 0.434463 | 1.1:+54858181 | MS.gene004694:CDS |
| TGAAAGGCAGCACTTTCAAC+AGG | 0.441957 | 1.1:+54854844 | MS.gene004694:CDS |
| ATGCTTTGTTTCCAAGAGCT+TGG | 0.444285 | 1.1:+54850278 | MS.gene004694:CDS |
| TGCTGTTTCAGCTTCCGCAT+GGG | 0.448130 | 1.1:+54854755 | MS.gene004694:CDS |
| CTATGATTCTACTGCTCCTA+GGG | 0.448143 | 1.1:+54856431 | MS.gene004694:CDS |
| CCTATGATTCTACTGCTCCT+AGG | 0.449205 | 1.1:+54856430 | MS.gene004694:CDS |
| TCTCGAGTGAAAGGATCTAT+AGG | 0.449861 | 1.1:-54847925 | None:intergenic |
| AGCATATCAAGAGGATTTAG+AGG | 0.452153 | 1.1:+54848187 | MS.gene004694:CDS |
| CAATGGTATACAGCATCCTC+AGG | 0.452922 | 1.1:+54857302 | MS.gene004694:CDS |
| CTTCTCCAAGCTTGTTCAGG+AGG | 0.456855 | 1.1:-54847443 | None:intergenic |
| AAATGAGACTTACAGAGAAC+TGG | 0.459619 | 1.1:-54848270 | None:intergenic |
| CGAAGTAGCGTAACAGCAAA+AGG | 0.462013 | 1.1:+54854505 | MS.gene004694:CDS |
| TCCATTGCAGCTCGGACAGC+AGG | 0.462620 | 1.1:-54856969 | None:intergenic |
| CTGCTGTTTCAGCTTCCGCA+TGG | 0.463351 | 1.1:+54854754 | MS.gene004694:CDS |
| TGGTGGAAGGTTCTTGTACT+TGG | 0.463613 | 1.1:+54856596 | MS.gene004694:CDS |
| TGCTGTTACGCTACTTCGGT+CGG | 0.464082 | 1.1:-54854500 | None:intergenic |
| TCATAAACAGTCCAAGCTCT+TGG | 0.465016 | 1.1:-54850289 | None:intergenic |
| GCTGCAACAATGATACTTGC+AGG | 0.465363 | 1.1:+54857506 | MS.gene004694:CDS |
| GCCTGCTGTCCGAGCTGCAA+TGG | 0.466643 | 1.1:+54856968 | MS.gene004694:CDS |
| TGAGAGAGCTGCAGTGCACC+TGG | 0.469761 | 1.1:+54855223 | MS.gene004694:CDS |
| TAAGGATGGGCAATTTGATC+GGG | 0.470665 | 1.1:+54854677 | MS.gene004694:intron |
| GGGTTCCACTTGGAGGGATG+GGG | 0.471807 | 1.1:+54847974 | MS.gene004694:CDS |
| CTGTAATTATGTGGTATGAA+AGG | 0.472855 | 1.1:-54850441 | None:intergenic |
| TTCATTGTAGAAAGAATTCG+TGG | 0.473789 | 1.1:+54846834 | MS.gene004694:CDS |
| CTGCTCCTCCTGAACAAGCT+TGG | 0.474967 | 1.1:+54847438 | MS.gene004694:CDS |
| CAAGCTGTCCTGTGTGAAGA+TGG | 0.475037 | 1.1:+54856729 | MS.gene004694:CDS |
| ATTCAAGCCGATCAATTGGC+TGG | 0.479609 | 1.1:+54857278 | MS.gene004694:CDS |
| CTGCTTTCTCTGTAATTATG+TGG | 0.483079 | 1.1:-54850450 | None:intergenic |
| AAAGTTAAAGGCGGCAGAAT+GGG | 0.484438 | 1.1:+54857395 | MS.gene004694:CDS |
| TAAGCATTCATTTCATGCCA+TGG | 0.484899 | 1.1:-54856837 | None:intergenic |
| CCTAGGAGCAGTAGAATCAT+AGG | 0.487066 | 1.1:-54856430 | None:intergenic |
| TATGCAGTCTCGAGAGATAT+GGG | 0.488836 | 1.1:+54857463 | MS.gene004694:CDS |
| GGTGGGAACTCTCACTTGTC+AGG | 0.489914 | 1.1:+54851482 | MS.gene004694:CDS |
| ACAGTGGCCTCATATATATG+AGG | 0.491959 | 1.1:-54858060 | None:intergenic |
| TCTCAAGGGGTTCCACTTGG+AGG | 0.494410 | 1.1:+54847967 | MS.gene004694:CDS |
| ACGCATGTGGTCATATGTTA+GGG | 0.494682 | 1.1:+54847727 | MS.gene004694:CDS |
| TTGGCTCCTGGTCAGCATGA+AGG | 0.494876 | 1.1:+54849343 | MS.gene004694:CDS |
| TTAAGGATGGGCAATTTGAT+CGG | 0.495077 | 1.1:+54854676 | MS.gene004694:intron |
| CCGAGCTGCAATGGAGTACA+TGG | 0.495164 | 1.1:+54856977 | MS.gene004694:CDS |
| TTCATTCACAGAGCTGAAGA+TGG | 0.499015 | 1.1:+54851618 | MS.gene004694:intron |
| AACATAACATACCAACTGTA+AGG | 0.499287 | 1.1:-54846885 | None:intergenic |
| GGGAAGAAGAGATTGCAAAA+TGG | 0.500460 | 1.1:+54855438 | MS.gene004694:CDS |
| ATCGGTCCCTCATATATATG+AGG | 0.500839 | 1.1:+54858053 | MS.gene004694:CDS |
| CAGCTTCTCTACGAGAGTGT+TGG | 0.501196 | 1.1:-54858328 | None:intergenic |
| CCATCAATTGTAAATGCCTC+TGG | 0.502651 | 1.1:-54858025 | None:intergenic |
| AGCTTCTCATCCTTAAGAAT+AGG | 0.503401 | 1.1:-54855467 | None:intergenic |
| ATGATCAGGGTATATCATCA+TGG | 0.507713 | 1.1:+54850221 | MS.gene004694:CDS |
| TTGTCAATGCATCATGAGCC+AGG | 0.508522 | 1.1:-54855241 | None:intergenic |
| TTGCAACTTTCTCGAGTGAA+AGG | 0.510427 | 1.1:-54847934 | None:intergenic |
| GTTTCATCCACCTTACCGTT+GGG | 0.511276 | 1.1:-54857437 | None:intergenic |
| GAGAACTGGTTGGCCATGAC+AGG | 0.513003 | 1.1:-54848256 | None:intergenic |
| ATCCTCCTCTAACAGGAGAT+AGG | 0.513477 | 1.1:-54858165 | None:intergenic |
| GATGGTCTTATTGAGAATGA+TGG | 0.516775 | 1.1:+54857020 | MS.gene004694:CDS |
| TCTTCAAGCTGCAGCTGCAA+TGG | 0.516844 | 1.1:+54857118 | MS.gene004694:CDS |
| AGAGCTGAAGATGGTGTCTC+CGG | 0.517920 | 1.1:+54851627 | MS.gene004694:intron |
| CCTGGTCAGCATGAAGGTGT+AGG | 0.519673 | 1.1:+54849349 | MS.gene004694:CDS |
| CTGATCAAACATATGATACA+TGG | 0.520231 | 1.1:+54857048 | MS.gene004694:CDS |
| GGCTGGTCAGAAGAAGGATA+CGG | 0.520711 | 1.1:+54857575 | MS.gene004694:CDS |
| CTCTACTTTCTTGTTGCTGG+AGG | 0.522845 | 1.1:+54856127 | MS.gene004694:CDS |
| GAAAGTTAAAGGCGGCAGAA+TGG | 0.527675 | 1.1:+54857394 | MS.gene004694:CDS |
| ATGCAAAAGGAAGTTTATGA+AGG | 0.528934 | 1.1:+54857175 | MS.gene004694:CDS |
| ACCGTGAATACTCTCAGAAA+CGG | 0.528941 | 1.1:+54856507 | MS.gene004694:CDS |
| TGCAATTTGGTGTCGATGTG+TGG | 0.529941 | 1.1:+54856946 | MS.gene004694:CDS |
| TCAAGATCAAAAGTTCTCTC+CGG | 0.530516 | 1.1:+54857348 | MS.gene004694:CDS |
| AAAATGGTGGTCAAGGGCCG+GGG | 0.531144 | 1.1:+54858354 | MS.gene004694:CDS |
| GGTTTCATCCACCTTACCGT+TGG | 0.531435 | 1.1:-54857438 | None:intergenic |
| GCATCTCAAGGGGTTCCACT+TGG | 0.534772 | 1.1:+54847964 | MS.gene004694:CDS |
| CTGTTGCATTTAGTCTTGCA+TGG | 0.535873 | 1.1:+54854799 | MS.gene004694:CDS |
| CTAGCAGGCTGGTCAGAAGA+AGG | 0.537501 | 1.1:+54857569 | MS.gene004694:CDS |
| TTACAATTGATGGGCACTAT+CGG | 0.539044 | 1.1:+54858035 | MS.gene004694:CDS |
| TGATCAGGGTATATCATCAT+GGG | 0.539292 | 1.1:+54850222 | MS.gene004694:CDS |
| ATTCTTTAAGAAGATTGGCA+TGG | 0.539896 | 1.1:-54847478 | None:intergenic |
| GTTTCTGGCAGAGGGAAACT+GGG | 0.542995 | 1.1:+54856764 | MS.gene004694:CDS |
| GCTGAGGGTATATTTCTAGC+AGG | 0.543807 | 1.1:+54857554 | MS.gene004694:CDS |
| GAGAGTAAAGTTTCTGGCAG+AGG | 0.545432 | 1.1:+54856755 | MS.gene004694:CDS |
| GGAAGGTTCTTGTACTTGGA+AGG | 0.545489 | 1.1:+54856600 | MS.gene004694:CDS |
| CCTACACCTTCATGCTGACC+AGG | 0.546036 | 1.1:-54849349 | None:intergenic |
| AACAATGATACTTGCAGGAA+TGG | 0.546051 | 1.1:+54857511 | MS.gene004694:CDS |
| TGCAAGCCATCTGCATCTCA+AGG | 0.547185 | 1.1:+54847952 | MS.gene004694:CDS |
| GTGGTCATATGTTAGGGAAG+AGG | 0.550645 | 1.1:+54847733 | MS.gene004694:CDS |
| GGGAAGAGGCTTCTCATGGA+AGG | 0.551137 | 1.1:+54847747 | MS.gene004694:CDS |
| GTTAGGGAAGAGGCTTCTCA+TGG | 0.552515 | 1.1:+54847743 | MS.gene004694:CDS |
| AGAAGAGATTGCAAAATGGC+AGG | 0.552563 | 1.1:+54855442 | MS.gene004694:CDS |
| AGGGTATATCATCATGGGGA+TGG | 0.552996 | 1.1:+54850227 | MS.gene004694:CDS |
| AGAGCTTGGACTGTTTATGA+TGG | 0.553201 | 1.1:+54850292 | MS.gene004694:CDS |
| GGGAAACTGGGGAACTCGTA+AGG | 0.554907 | 1.1:+54856776 | MS.gene004694:CDS |
| CAGAGGCATTTACAATTGAT+GGG | 0.555084 | 1.1:+54858026 | MS.gene004694:CDS |
| CTCAAGGGGTTCCACTTGGA+GGG | 0.555712 | 1.1:+54847968 | MS.gene004694:CDS |
| TAGTGTCTCTCCAGGTGATG+AGG | 0.558574 | 1.1:-54854727 | None:intergenic |
| CTGGTCAGCATGAAGGTGTA+GGG | 0.558732 | 1.1:+54849350 | MS.gene004694:CDS |
| CCGATCAATTGGCTGGGCAA+TGG | 0.559132 | 1.1:+54857285 | MS.gene004694:CDS |
| ACATTCATGATACTAGTAAG+TGG | 0.559226 | 1.1:+54856862 | MS.gene004694:CDS |
| AGGGTATATTTCTAGCAGGC+TGG | 0.559806 | 1.1:+54857558 | MS.gene004694:CDS |
| GCTGGAGGAACAATTTGGAT+AGG | 0.560165 | 1.1:+54856142 | MS.gene004694:CDS |
| CAGTCTCGAGAGATATGGGC+AGG | 0.560172 | 1.1:+54857467 | MS.gene004694:CDS |
| TTGTGCAGAATTCTATTGGT+GGG | 0.560692 | 1.1:+54851465 | MS.gene004694:intron |
| TATCTCTCGAGACTGCATAC+AGG | 0.561033 | 1.1:-54857459 | None:intergenic |
| AAGCATGGTACGTTGAGTGC+TGG | 0.564049 | 1.1:-54850261 | None:intergenic |
| TTCAAGCCGATCAATTGGCT+GGG | 0.565771 | 1.1:+54857279 | MS.gene004694:CDS |
| GTTCTTGTACTTGGAAGGTG+TGG | 0.567369 | 1.1:+54856605 | MS.gene004694:CDS |
| AGTGTCTCTCCAGGTGATGA+GGG | 0.572454 | 1.1:-54854726 | None:intergenic |
| CCATGTACTCCATTGCAGCT+CGG | 0.573822 | 1.1:-54856977 | None:intergenic |
| TTATTGATATACTCTTCAGT+AGG | 0.573949 | 1.1:-54846857 | None:intergenic |
| GCAGCACATAGTGTCTCTCC+AGG | 0.574981 | 1.1:-54854735 | None:intergenic |
| ATGTGAACCATCACCTGTCA+TGG | 0.576503 | 1.1:+54848243 | MS.gene004694:CDS |
| AAATATGAGAAATAATAGCC+AGG | 0.577227 | 1.1:+54856311 | MS.gene004694:CDS |
| TGGCATGCATCCCAACGGTA+AGG | 0.577901 | 1.1:+54857427 | MS.gene004694:CDS |
| CCATTGCCCAGCCAATTGAT+CGG | 0.578065 | 1.1:-54857285 | None:intergenic |
| GCTGCAATGGCGATTCAACT+AGG | 0.581074 | 1.1:+54857131 | MS.gene004694:CDS |
| CCGAAAGTGAAGTTTGTGAA+AGG | 0.581461 | 1.1:+54854828 | MS.gene004694:CDS |
| CAATAAAACCACCTTACAGT+TGG | 0.581904 | 1.1:+54846874 | MS.gene004694:CDS |
| GCAAGCCATCTGCATCTCAA+GGG | 0.582594 | 1.1:+54847953 | MS.gene004694:CDS |
| GATCAAAAGTTCTCTCCGGA+AGG | 0.582612 | 1.1:+54857352 | MS.gene004694:CDS |
| TATGAACAAAAGCTGTGGAA+TGG | 0.583308 | 1.1:+54857209 | MS.gene004694:CDS |
| CATGCATCCCAACGGTAAGG+TGG | 0.585856 | 1.1:+54857430 | MS.gene004694:CDS |
| AGAGTAAAGTTTCTGGCAGA+GGG | 0.586626 | 1.1:+54856756 | MS.gene004694:CDS |
| CGAAACAGATTATACACGGT+GGG | 0.586630 | 1.1:+54855418 | MS.gene004694:intron |
| CGGTCGGACAGCCCAAAACA+TGG | 0.589504 | 1.1:-54854484 | None:intergenic |
| ATGTATCATATGTTTGATCA+GGG | 0.589770 | 1.1:-54857046 | None:intergenic |
| TCCGCATGGGTGGAACCCCA+TGG | 0.592731 | 1.1:+54854768 | MS.gene004694:CDS |
| TGTTTCAGCTTCCGCATGGG+TGG | 0.593550 | 1.1:+54854758 | MS.gene004694:CDS |
| GAGGCCTTCACAACTGCTGA+GGG | 0.595335 | 1.1:+54857539 | MS.gene004694:CDS |
| CATGATGATGATAATGATGA+TGG | 0.598644 | 1.1:+54856576 | MS.gene004694:CDS |
| GATGATGATAATGATGATGG+TGG | 0.599702 | 1.1:+54856579 | MS.gene004694:CDS |
| TATACCCTCAGCAGTTGTGA+AGG | 0.600362 | 1.1:-54857543 | None:intergenic |
| GCTGGTCAGAAGAAGGATAC+GGG | 0.601383 | 1.1:+54857576 | MS.gene004694:CDS |
| ACTTGCAGGAATGGAAGAAG+AGG | 0.601561 | 1.1:+54857520 | MS.gene004694:CDS |
| CACCTATCTCCTGTTAGAGG+AGG | 0.602664 | 1.1:+54858163 | MS.gene004694:CDS |
| ATATGGGCAGGTGTGACCTA+CGG | 0.602987 | 1.1:+54857479 | MS.gene004694:CDS |
| GCGTAACAGCAAAAGGAATG+TGG | 0.603596 | 1.1:+54854512 | MS.gene004694:CDS |
| CTCTCCTTCCATCTTCACAC+AGG | 0.603646 | 1.1:-54856737 | None:intergenic |
| ATTTGGGGACACATGATCCA+TGG | 0.607898 | 1.1:+54856820 | MS.gene004694:CDS |
| CTCCTCTAACAGGAGATAGG+TGG | 0.608598 | 1.1:-54858162 | None:intergenic |
| GTAATTATGTGGTATGAAAG+GGG | 0.610838 | 1.1:-54850439 | None:intergenic |
| AGCAGGAAAGCTGATGATCA+GGG | 0.611643 | 1.1:+54850208 | MS.gene004694:CDS |
| GGGTTAGTAACAGTGTGAAG+AGG | 0.611676 | 1.1:-54858307 | None:intergenic |
| TATGCCAAAGGCAGTACTTG+AGG | 0.611801 | 1.1:+54858111 | MS.gene004694:CDS |
| AGAGGCCTTCACAACTGCTG+AGG | 0.613758 | 1.1:+54857538 | MS.gene004694:CDS |
| GGTGTGAGTGCTTACTGTGG+TGG | 0.615502 | 1.1:+54857080 | MS.gene004694:CDS |
| TCCTAGGGGACATAGTCACT+TGG | 0.616516 | 1.1:+54856446 | MS.gene004694:CDS |
| TCCAAGTGACTATGTCCCCT+AGG | 0.619743 | 1.1:-54856447 | None:intergenic |
| GATTTGGAAAGAATGGTTAG+CGG | 0.622055 | 1.1:+54846803 | None:intergenic |
| CACAGTAAGCACTCACACCA+TGG | 0.625608 | 1.1:-54857076 | None:intergenic |
| GGAAGAGGCTTCTCATGGAA+GGG | 0.626324 | 1.1:+54847748 | MS.gene004694:CDS |
| TGGTTGGCCATGACAGGTGA+TGG | 0.630994 | 1.1:-54848250 | None:intergenic |
| ATGAGGCCACTGTCAATTTG+GGG | 0.631387 | 1.1:+54858070 | MS.gene004694:CDS |
| AGGATGAGAAGCTACCAGAA+TGG | 0.634200 | 1.1:+54855477 | MS.gene004694:CDS |
| AATGTGGACTAAAATGGTGA+AGG | 0.634442 | 1.1:+54854528 | MS.gene004694:CDS |
| GGGCTGTCCCACATGATTTG+GGG | 0.634911 | 1.1:+54856805 | MS.gene004694:CDS |
| CTGTCCTGTGTGAAGATGGA+AGG | 0.636012 | 1.1:+54856733 | MS.gene004694:CDS |
| TATGATACATGGACTGTCCA+TGG | 0.636500 | 1.1:+54857059 | MS.gene004694:CDS |
| CAAGCCATCTGCATCTCAAG+GGG | 0.636690 | 1.1:+54847954 | MS.gene004694:CDS |
| TGTATATTTAATTCAATACG+AGG | 0.637943 | 1.1:-54856693 | None:intergenic |
| GGAACCCCTTGAGATGCAGA+TGG | 0.638569 | 1.1:-54847958 | None:intergenic |
| CAGTGGCCTCATATATATGA+GGG | 0.641376 | 1.1:-54858059 | None:intergenic |
| TTCGATTAGGTATACGCATG+TGG | 0.644863 | 1.1:+54847714 | MS.gene004694:CDS |
| TCATACCCCATCCCTCCAAG+TGG | 0.648533 | 1.1:-54847979 | None:intergenic |
| CTTGTGCAGAATTCTATTGG+TGG | 0.648579 | 1.1:+54851464 | MS.gene004694:intron |
| TCATGTGTCCCCAAATCATG+TGG | 0.650108 | 1.1:-54856813 | None:intergenic |
| ATATGCATTAACTATGCCAA+AGG | 0.651288 | 1.1:+54858099 | MS.gene004694:CDS |
| CATTGTTGCAGCAACACCGT+AGG | 0.654279 | 1.1:-54857495 | None:intergenic |
| ATGATAATGATGATGGTGGA+AGG | 0.654300 | 1.1:+54856583 | MS.gene004694:CDS |
| AAGCTCTTGGAAACAAAGCA+TGG | 0.659885 | 1.1:-54850276 | None:intergenic |
| CAATTCGATAGAGATGCTGA+TGG | 0.661858 | 1.1:+54857002 | MS.gene004694:CDS |
| AGGAGTGGCAGCATATCAAG+AGG | 0.664942 | 1.1:+54848178 | MS.gene004694:intron |
| TACAAGTTACAACTGAACCC+CGG | 0.668319 | 1.1:-54858371 | None:intergenic |
| GGGAACTCGTAAGGTTTATG+GGG | 0.669077 | 1.1:+54856785 | MS.gene004694:CDS |
| TCCATGGGGTTCCACCCATG+CGG | 0.669209 | 1.1:-54854769 | None:intergenic |
| GTAAATGGCATGCATCCCAA+CGG | 0.671633 | 1.1:+54857422 | MS.gene004694:CDS |
| CAGTATATGAACAAAAGCTG+TGG | 0.672417 | 1.1:+54857204 | MS.gene004694:CDS |
| TTAGAGGTGAATTCAGACAA+TGG | 0.673231 | 1.1:+54848203 | MS.gene004694:CDS |
| AATGGTATACAGCATCCTCA+GGG | 0.677357 | 1.1:+54857303 | MS.gene004694:CDS |
| CATGTGTCCCCAAATCATGT+GGG | 0.677655 | 1.1:-54856812 | None:intergenic |
| GATCAGGGTATATCATCATG+GGG | 0.682964 | 1.1:+54850223 | MS.gene004694:CDS |
| GAGACTTACAGAGAACTGGT+TGG | 0.687892 | 1.1:-54848266 | None:intergenic |
| GGTGATGGTTCACATAGACC+AGG | 0.689207 | 1.1:-54848235 | None:intergenic |
| ATAACATACCAACTGTAAGG+TGG | 0.689223 | 1.1:-54846882 | None:intergenic |
| GAATCGAAACAGATTATACA+CGG | 0.692636 | 1.1:+54855414 | MS.gene004694:intron |
| TGCATGCCCCAAATTGACAG+TGG | 0.696126 | 1.1:-54858076 | None:intergenic |
| CATGGTGTGAGTGCTTACTG+TGG | 0.707900 | 1.1:+54857077 | MS.gene004694:CDS |
| CTTGTGATATAGAAGTACGC+CGG | 0.716435 | 1.1:-54851646 | None:intergenic |
| AATGTGATGAAAGTTAAAGG+CGG | 0.717612 | 1.1:+54857386 | MS.gene004694:CDS |
| TTTCTGGCAGAGGGAAACTG+GGG | 0.722226 | 1.1:+54856765 | MS.gene004694:CDS |
| TCGAAACAGATTATACACGG+TGG | 0.728849 | 1.1:+54855417 | MS.gene004694:intron |
| TATGATTCTACTGCTCCTAG+GGG | 0.747175 | 1.1:+54856432 | MS.gene004694:CDS |
| ATACTGGTTTCAGACTCCAG+AGG | 0.761858 | 1.1:+54858009 | MS.gene004694:CDS |
| AAGGTGTGGAATATGTCATG+TGG | 0.762463 | 1.1:+54856619 | MS.gene004694:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 54846815 | 54858394 | 54846815 | ID=MS.gene004694 |
| chr1.1 | mRNA | 54846815 | 54858394 | 54846815 | ID=MS.gene004694.t1;Parent=MS.gene004694 |
| chr1.1 | exon | 54846815 | 54846895 | 54846815 | ID=MS.gene004694.t1.exon1;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54846815 | 54846895 | 54846815 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54847422 | 54847532 | 54847422 | ID=MS.gene004694.t1.exon2;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54847422 | 54847532 | 54847422 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54847713 | 54847769 | 54847713 | ID=MS.gene004694.t1.exon3;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54847713 | 54847769 | 54847713 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54847919 | 54847995 | 54847919 | ID=MS.gene004694.t1.exon4;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54847919 | 54847995 | 54847919 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54848180 | 54848279 | 54848180 | ID=MS.gene004694.t1.exon5;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54848180 | 54848279 | 54848180 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54849298 | 54849371 | 54849298 | ID=MS.gene004694.t1.exon6;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54849298 | 54849371 | 54849298 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54850204 | 54850313 | 54850204 | ID=MS.gene004694.t1.exon7;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54850204 | 54850313 | 54850204 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54850397 | 54850500 | 54850397 | ID=MS.gene004694.t1.exon8;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54850397 | 54850500 | 54850397 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54851326 | 54851379 | 54851326 | ID=MS.gene004694.t1.exon9;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54851326 | 54851379 | 54851326 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54851473 | 54851528 | 54851473 | ID=MS.gene004694.t1.exon10;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54851473 | 54851528 | 54851473 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54851629 | 54851667 | 54851629 | ID=MS.gene004694.t1.exon11;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54851629 | 54851667 | 54851629 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54854408 | 54854549 | 54854408 | ID=MS.gene004694.t1.exon12;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54854408 | 54854549 | 54854408 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54854681 | 54854865 | 54854681 | ID=MS.gene004694.t1.exon13;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54854681 | 54854865 | 54854681 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54855196 | 54855263 | 54855196 | ID=MS.gene004694.t1.exon14;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54855196 | 54855263 | 54855196 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54855426 | 54855498 | 54855426 | ID=MS.gene004694.t1.exon15;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54855426 | 54855498 | 54855426 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54856102 | 54856163 | 54856102 | ID=MS.gene004694.t1.exon16;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54856102 | 54856163 | 54856102 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54856292 | 54857597 | 54856292 | ID=MS.gene004694.t1.exon17;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54856292 | 54857597 | 54856292 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54858009 | 54858202 | 54858009 | ID=MS.gene004694.t1.exon18;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54858009 | 54858202 | 54858009 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| chr1.1 | exon | 54858303 | 54858394 | 54858303 | ID=MS.gene004694.t1.exon19;Parent=MS.gene004694.t1 |
| chr1.1 | CDS | 54858303 | 54858394 | 54858303 | ID=cds.MS.gene004694.t1;Parent=MS.gene004694.t1 |
| Gene Sequence |
| Protein sequence |
