Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43487.t1 | XP_013458726.1 | 96.7 | 961 | 31 | 1 | 1 | 961 | 1 | 960 | 0.00E+00 | 1904 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43487.t1 | Q9HCG7 | 38.8 | 859 | 439 | 15 | 59 | 902 | 106 | 892 | 5.8e-167 | 589.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43487.t1 | A0A072UUL4 | 96.7 | 961 | 31 | 1 | 1 | 961 | 1 | 960 | 0.0e+00 | 1904.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43487 | MS.gene32077 | PPI |
| MS.gene43487 | MS.gene004694 | PPI |
| MS.gene036249 | MS.gene43487 | PPI |
| MS.gene40011 | MS.gene43487 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43487.t1 | MTR_4g134760 | 97.609 | 962 | 20 | 2 | 1 | 961 | 1 | 960 | 0.0 | 1959 |
| MS.gene43487.t1 | MTR_4g134760 | 98.335 | 781 | 13 | 0 | 181 | 961 | 1 | 781 | 0.0 | 1609 |
| MS.gene43487.t1 | MTR_4g134760 | 98.261 | 690 | 12 | 0 | 272 | 961 | 1 | 690 | 0.0 | 1420 |
| MS.gene43487.t1 | MTR_1g072720 | 51.528 | 916 | 394 | 13 | 31 | 904 | 36 | 943 | 0.0 | 887 |
| MS.gene43487.t1 | MTR_1g072720 | 51.528 | 916 | 394 | 13 | 31 | 904 | 36 | 943 | 0.0 | 887 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43487.t1 | AT5G49900 | 67.497 | 963 | 300 | 6 | 6 | 961 | 1 | 957 | 0.0 | 1339 |
| MS.gene43487.t1 | AT5G49900 | 67.497 | 963 | 300 | 6 | 6 | 961 | 1 | 957 | 0.0 | 1339 |
| MS.gene43487.t1 | AT1G33700 | 62.367 | 938 | 332 | 9 | 29 | 953 | 10 | 939 | 0.0 | 1187 |
| MS.gene43487.t1 | AT1G33700 | 62.367 | 938 | 332 | 9 | 29 | 953 | 10 | 939 | 0.0 | 1187 |
| MS.gene43487.t1 | AT1G33700 | 62.367 | 938 | 332 | 9 | 29 | 953 | 10 | 939 | 0.0 | 1187 |
| MS.gene43487.t1 | AT4G10060 | 60.105 | 955 | 334 | 13 | 12 | 957 | 2 | 918 | 0.0 | 1124 |
| MS.gene43487.t1 | AT4G10060 | 60.105 | 955 | 334 | 13 | 12 | 957 | 2 | 918 | 0.0 | 1124 |
| MS.gene43487.t1 | AT1G33700 | 63.529 | 850 | 291 | 8 | 29 | 867 | 10 | 851 | 0.0 | 1100 |
| MS.gene43487.t1 | AT5G49900 | 68.534 | 696 | 212 | 3 | 272 | 961 | 1 | 695 | 0.0 | 983 |
| MS.gene43487.t1 | AT3G24180 | 53.206 | 889 | 385 | 12 | 32 | 904 | 31 | 904 | 0.0 | 920 |
| MS.gene43487.t1 | AT3G24180 | 53.206 | 889 | 385 | 12 | 32 | 904 | 31 | 904 | 0.0 | 920 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATATATACGTACCTTTA+TGG | 0.099246 | 8.4:-134568 | None:intergenic |
| TTATATTGCAATTGCTTATA+TGG | 0.167148 | 8.4:+154651 | MS.gene43487:CDS |
| GATATGCAGCTGAATAATTT+TGG | 0.177641 | 8.4:+136230 | MS.gene43487:intron |
| AGCTACTCTCCTTGTAATTA+TGG | 0.181605 | 8.4:-136101 | None:intergenic |
| ATTGCACATGATGCTATTAT+TGG | 0.193368 | 8.4:+153430 | MS.gene43487:CDS |
| GAACTTTACTACCTGAATTC+TGG | 0.214389 | 8.4:+153870 | MS.gene43487:CDS |
| TCTTCTCATGGTGTTCCTTT+AGG | 0.215555 | 8.4:+135072 | MS.gene43487:CDS |
| TGCCCTGTCTTTGTTATATC+TGG | 0.218998 | 8.4:+136745 | MS.gene43487:CDS |
| TTCTTTATATCTGGCTTCCC+TGG | 0.228231 | 8.4:-135532 | None:intergenic |
| GGTTTCTCTTCACAAGTTAA+AGG | 0.240637 | 8.4:-135233 | None:intergenic |
| ATGGCCTACTTCTTTATATC+TGG | 0.255739 | 8.4:-135541 | None:intergenic |
| GGGAAACGAGGAGCTGTAAA+TGG | 0.259382 | 8.4:+155179 | MS.gene43487:CDS |
| CTGGAGGAAGGGTTTATTAC+AGG | 0.269362 | 8.4:+153288 | MS.gene43487:CDS |
| AGTTTGTTCTTCAGGTTTAC+AGG | 0.271227 | 8.4:+154575 | MS.gene43487:CDS |
| GTCTTTGCCAATCTTCAATC+TGG | 0.274651 | 8.4:-153724 | None:intergenic |
| GAAAACTGATTTGCTAAAAC+TGG | 0.279544 | 8.4:-135254 | None:intergenic |
| TGGATCCAGAAGTCTATTTC+AGG | 0.293234 | 8.4:+155705 | MS.gene43487:CDS |
| AGTTCATTCAAAAGGGTAAC+AGG | 0.294104 | 8.4:-153852 | None:intergenic |
| CACAAGAGTTTCATCTTTCC+AGG | 0.294891 | 8.4:-154424 | None:intergenic |
| GAATCCAAAGTTTGTTCTTC+AGG | 0.297782 | 8.4:+154567 | MS.gene43487:CDS |
| CTCCCATTGGTTATCGTCTA+TGG | 0.306009 | 8.4:+134878 | MS.gene43487:CDS |
| CAGTCCAAGCTTCCGGAGTT+TGG | 0.310319 | 8.4:-155489 | None:intergenic |
| CGTCACCATCCTTGTCAAAT+TGG | 0.317306 | 8.4:-154675 | None:intergenic |
| CCTCCAGGGAACTTGACTTC+AGG | 0.335725 | 8.4:-153272 | None:intergenic |
| TGCATTGCCCATATGGCTAA+TGG | 0.348844 | 8.4:-155547 | None:intergenic |
| TATAACCTGAAATAGACTTC+TGG | 0.351243 | 8.4:-155710 | None:intergenic |
| AACTTTACTACCTGAATTCT+GGG | 0.352039 | 8.4:+153871 | MS.gene43487:CDS |
| TCTCCTCCTTCAACTTTAGA+AGG | 0.354918 | 8.4:-155681 | None:intergenic |
| GGTGCTGTTCCTCATGATAT+TGG | 0.358561 | 8.4:+154478 | MS.gene43487:CDS |
| TGAACACTAAGTTCAAGTTT+TGG | 0.361098 | 8.4:-154367 | None:intergenic |
| CCAGGAAAACATGACTGATA+TGG | 0.362330 | 8.4:+155292 | MS.gene43487:CDS |
| GGTAGTAAAGTTCATTCAAA+AGG | 0.366090 | 8.4:-153860 | None:intergenic |
| GCTACTCTCCTTGTAATTAT+GGG | 0.370281 | 8.4:-136100 | None:intergenic |
| TTCCTTCAAGATAAAGAAAC+TGG | 0.371553 | 8.4:-154276 | None:intergenic |
| GGCCAGTTTCTTTATCTTGA+AGG | 0.374193 | 8.4:+154274 | MS.gene43487:CDS |
| GTAAGTTGTGGAGGTTTCCC+TGG | 0.375069 | 8.4:-134688 | None:intergenic |
| TCTTTAGCAGTCCAAGCTTC+CGG | 0.375607 | 8.4:-155496 | None:intergenic |
| GACCCGTGGTCTGAAGTAAA+TGG | 0.376965 | 8.4:+154508 | MS.gene43487:CDS |
| CAATGCAATCACGAGAAATA+TGG | 0.384729 | 8.4:+155234 | MS.gene43487:CDS |
| TTGTAATTATGGGGTATAAC+AGG | 0.385814 | 8.4:-136090 | None:intergenic |
| CATGTTTCAATTCCTGATGC+TGG | 0.388402 | 8.4:-135861 | None:intergenic |
| TCATGTACTGTCCATGCCCT+TGG | 0.389887 | 8.4:-135930 | None:intergenic |
| TTGGTATCAAGGAAGGTTCT+TGG | 0.391628 | 8.4:+154457 | MS.gene43487:CDS |
| ATAACTGATAAGTACCATTC+AGG | 0.394501 | 8.4:-153770 | None:intergenic |
| GTGTTCCTTTAGGTGGTGTT+GGG | 0.394512 | 8.4:+135082 | MS.gene43487:CDS |
| GTGCATAGTTTAGTTAATAT+AGG | 0.394589 | 8.4:+154064 | MS.gene43487:CDS |
| TTTAGAGAAAATCCAGCATC+AGG | 0.398014 | 8.4:+135849 | MS.gene43487:intron |
| TGCCCACTGCATTGCCCATA+TGG | 0.403270 | 8.4:-155554 | None:intergenic |
| ATCTTCTCTTCTCCAACAAT+TGG | 0.403373 | 8.4:-155104 | None:intergenic |
| TAAACCTGAAGAACAAACTT+TGG | 0.405705 | 8.4:-154571 | None:intergenic |
| AAGATTAAGTACCCTTCCTT+TGG | 0.413526 | 8.4:-134923 | None:intergenic |
| TGATGCTGATGTTGCCATAA+AGG | 0.413661 | 8.4:+134554 | MS.gene43487:CDS |
| TCATAATGTCGAGCGAGCTT+TGG | 0.416449 | 8.4:-155586 | None:intergenic |
| AGCTAATTGATCAGCTTGTA+TGG | 0.417046 | 8.4:-154947 | None:intergenic |
| CTGGATCATTGTTGCAGCTA+AGG | 0.420338 | 8.4:-155273 | None:intergenic |
| CTCCAGGGAACTTGACTTCA+GGG | 0.421106 | 8.4:-153271 | None:intergenic |
| GGGGTATAACAGGTGAAATC+TGG | 0.423473 | 8.4:-136080 | None:intergenic |
| GGTGTTCCTTTAGGTGGTGT+TGG | 0.426591 | 8.4:+135081 | MS.gene43487:CDS |
| ATTGTGGGTAGCAGCACTTC+AGG | 0.426923 | 8.4:+154777 | MS.gene43487:CDS |
| CTCATGCTAGGATGCCTGAT+GGG | 0.430554 | 8.4:+136536 | MS.gene43487:intron |
| TATGACACATGGTCTGTATC+TGG | 0.434538 | 8.4:+154733 | MS.gene43487:CDS |
| CATGTGTCATAGGTTTGATC+AGG | 0.436014 | 8.4:-154721 | None:intergenic |
| TTCAATTATGATAGCAGTTG+TGG | 0.438208 | 8.4:+154910 | MS.gene43487:CDS |
| ACATGCGCCCATTAGCCATA+TGG | 0.439365 | 8.4:+155539 | MS.gene43487:CDS |
| CATGTACTGTCCATGCCCTT+GGG | 0.439924 | 8.4:-135929 | None:intergenic |
| AGATACAGACCATGTGTCAT+AGG | 0.442430 | 8.4:-154731 | None:intergenic |
| CATGTGGCATGAAATTAAAC+AGG | 0.442480 | 8.4:+136795 | MS.gene43487:CDS |
| AGAAGTTTGCTCAAGCTGTC+TGG | 0.449380 | 8.4:+154620 | MS.gene43487:CDS |
| TCTTTATATCTGGCTTCCCT+GGG | 0.451028 | 8.4:-135531 | None:intergenic |
| CAAAACCAGGATCATCCATT+GGG | 0.452311 | 8.4:+153174 | MS.gene43487:CDS |
| CCTGCATCAAAGTCTGCATA+TGG | 0.454083 | 8.4:+154217 | MS.gene43487:CDS |
| CTTTCCAAACTCCGGAAGCT+TGG | 0.457462 | 8.4:+155485 | MS.gene43487:CDS |
| GGAGGACAATCAGAATTTAC+TGG | 0.458343 | 8.4:+136376 | MS.gene43487:CDS |
| TTCTTCAGTTCAGGAAGCAT+TGG | 0.463698 | 8.4:+135170 | MS.gene43487:intron |
| AGCTCACCTTCTAAAGTTGA+AGG | 0.465658 | 8.4:+155675 | MS.gene43487:CDS |
| GCATTGCCCATATGGCTAAT+GGG | 0.470463 | 8.4:-155546 | None:intergenic |
| CATGCGCCCATTAGCCATAT+GGG | 0.474287 | 8.4:+155540 | MS.gene43487:CDS |
| TCTTTGCCAATCTTCAATCT+GGG | 0.475057 | 8.4:-153723 | None:intergenic |
| ACTTGAACTTAGTGTTCAAA+GGG | 0.475209 | 8.4:+154372 | MS.gene43487:CDS |
| TGCGTATAGTGGTGGATTGT+GGG | 0.476030 | 8.4:+154762 | MS.gene43487:CDS |
| CTGTAATAAACCCTTCCTCC+AGG | 0.476382 | 8.4:-153287 | None:intergenic |
| TTCTGAGACATGAACATGTT+CGG | 0.477944 | 8.4:-136722 | None:intergenic |
| AGCACACCATGCACCCCATC+AGG | 0.478586 | 8.4:-136550 | None:intergenic |
| GTGTGCATTCAGAATTCTGT+TGG | 0.480309 | 8.4:+136355 | MS.gene43487:intron |
| CAGGAATTGAAACATGGGAT+TGG | 0.480599 | 8.4:+135868 | MS.gene43487:CDS |
| TGGATTAAGGTTGTTGACCC+AGG | 0.480995 | 8.4:+134670 | MS.gene43487:intron |
| TGCCCTGAAGTCAAGTTCCC+TGG | 0.483440 | 8.4:+153269 | MS.gene43487:CDS |
| TCTTCAGGTTTACAGGGATG+TGG | 0.485017 | 8.4:+154582 | MS.gene43487:CDS |
| TACAGGGATGTGGTTGCCAC+TGG | 0.485316 | 8.4:+154592 | MS.gene43487:CDS |
| GCATGGTCTAGTGATGGTCT+CGG | 0.487694 | 8.4:+155347 | MS.gene43487:CDS |
| ATAAATGTTGGCAGGAAAGA+TGG | 0.487757 | 8.4:+134485 | None:intergenic |
| GAGTAAGTCTTCTCCAAGAA+GGG | 0.489356 | 8.4:+154239 | MS.gene43487:CDS |
| GAACCAGATATAACAAAGAC+AGG | 0.489794 | 8.4:-136748 | None:intergenic |
| AATCATCTCTTTGAAAGATA+AGG | 0.491279 | 8.4:-134764 | None:intergenic |
| GTGCGTATAGTGGTGGATTG+TGG | 0.492982 | 8.4:+154761 | MS.gene43487:CDS |
| CTAAAGTTGAAGGAGGAGAC+TGG | 0.493503 | 8.4:+155685 | MS.gene43487:CDS |
| ACTCTTGTGTGATGGACAAT+TGG | 0.494421 | 8.4:+154438 | MS.gene43487:CDS |
| CAGGAAATCTCTTGTCCTCA+AGG | 0.495256 | 8.4:-153751 | None:intergenic |
| TGGCAGCTTCTTCACGAACA+TGG | 0.498458 | 8.4:-134903 | None:intergenic |
| ATACAAGCTGATCAATTAGC+TGG | 0.499352 | 8.4:+154949 | MS.gene43487:CDS |
| AACTTGAACTTAGTGTTCAA+AGG | 0.499425 | 8.4:+154371 | MS.gene43487:CDS |
| AGGACAAGAGATTTCCTGAA+TGG | 0.500451 | 8.4:+153756 | MS.gene43487:CDS |
| GTCTCCAACCTCATGTGCTA+AGG | 0.502611 | 8.4:-154809 | None:intergenic |
| ATCAATCCATAAATGTTGGC+AGG | 0.502657 | 8.4:+134477 | None:intergenic |
| GTTACATGACGCTTAGCAAA+AGG | 0.503532 | 8.4:-135048 | None:intergenic |
| CGCTGCCACGTAAGTTGTGG+AGG | 0.506213 | 8.4:-134697 | None:intergenic |
| ATAATCTTTATAATACAGAT+AGG | 0.506994 | 8.4:+154533 | MS.gene43487:CDS |
| TCAAAACCAGGATCATCCAT+TGG | 0.508472 | 8.4:+153173 | MS.gene43487:CDS |
| GCAGTACTGATGCATGATCC+TGG | 0.513335 | 8.4:+154406 | MS.gene43487:CDS |
| CGCCATAGACGATAACCAAT+GGG | 0.513371 | 8.4:-134880 | None:intergenic |
| ACATGGGATTGGAATATGAA+TGG | 0.513380 | 8.4:+135879 | MS.gene43487:CDS |
| GACATGTCAACATTCCCATC+AGG | 0.520071 | 8.4:-155209 | None:intergenic |
| TATTCAAGCGTACTATGCCC+AGG | 0.520326 | 8.4:+135514 | MS.gene43487:CDS |
| TCTCATGGTGTTCCTTTAGG+TGG | 0.521227 | 8.4:+135075 | MS.gene43487:CDS |
| CTTAGCTGCAACAATGATCC+AGG | 0.521713 | 8.4:+155274 | MS.gene43487:CDS |
| CAGCATCAGGAATTGAAACA+TGG | 0.526613 | 8.4:+135862 | MS.gene43487:CDS |
| CAATCACGAGAAATATGGTC+AGG | 0.527149 | 8.4:+155239 | MS.gene43487:CDS |
| AGCACATGAGGTTGGAGACA+AGG | 0.527943 | 8.4:+154813 | MS.gene43487:CDS |
| TTGCGCTGCCACGTAAGTTG+TGG | 0.532147 | 8.4:-134700 | None:intergenic |
| AATCTCTTGTCCTCAAGGAT+TGG | 0.532991 | 8.4:-153746 | None:intergenic |
| GGAAACGAGGAGCTGTAAAT+GGG | 0.534811 | 8.4:+155180 | MS.gene43487:CDS |
| GGGAGTCCCAGATTGAAGAT+TGG | 0.537150 | 8.4:+153717 | MS.gene43487:CDS |
| GGAGTAAGTCTTCTCCAAGA+AGG | 0.537592 | 8.4:+154238 | MS.gene43487:CDS |
| TGCAGGTATGCTAGAGCATG+TGG | 0.537618 | 8.4:+155074 | MS.gene43487:intron |
| AAAGATAAGGTGAATTCCGA+TGG | 0.538626 | 8.4:-134751 | None:intergenic |
| GTTATATCTGGTTCTCACGA+GGG | 0.540028 | 8.4:+136757 | MS.gene43487:CDS |
| GTGAAGAAGCTGCCAAAGGA+AGG | 0.540272 | 8.4:+134911 | MS.gene43487:CDS |
| AGCTGCAATTGCAAATGTGA+CGG | 0.546271 | 8.4:-136692 | None:intergenic |
| CATGGTCTAGTGATGGTCTC+GGG | 0.546754 | 8.4:+155348 | MS.gene43487:CDS |
| ACCCACCCAACACCACCTAA+AGG | 0.546866 | 8.4:-135087 | None:intergenic |
| TTACAGGTCAATTTCAGCGT+TGG | 0.546996 | 8.4:+135201 | MS.gene43487:CDS |
| CAGTTATTCTTTCCAAACTC+CGG | 0.549508 | 8.4:+155477 | MS.gene43487:intron |
| AAGTCAAGTTCCCTGGAGGA+AGG | 0.550116 | 8.4:+153276 | MS.gene43487:CDS |
| TATATGACTTTACTTGCAAG+AGG | 0.552672 | 8.4:+155731 | MS.gene43487:CDS |
| CGTCATGTAACTTCTTCTCA+TGG | 0.553671 | 8.4:+135060 | MS.gene43487:CDS |
| ACACCTGTGCCTTCAAAACC+AGG | 0.554288 | 8.4:+153161 | MS.gene43487:CDS |
| TGTTATATCTGGTTCTCACG+AGG | 0.555097 | 8.4:+136756 | MS.gene43487:CDS |
| GCTGCCCCAATGGATGATCC+TGG | 0.555639 | 8.4:-153179 | None:intergenic |
| ATGGACCAATTTGACAAGGA+TGG | 0.556149 | 8.4:+154670 | MS.gene43487:CDS |
| CCATATGCAGACTTTGATGC+AGG | 0.556702 | 8.4:-154217 | None:intergenic |
| GTAGTAAAGTTCATTCAAAA+GGG | 0.558497 | 8.4:-153859 | None:intergenic |
| GCTGCAATTGCAAATGTGAC+GGG | 0.559690 | 8.4:-136691 | None:intergenic |
| TGCAAATGCAAATGTTCCAT+CGG | 0.560180 | 8.4:+134735 | MS.gene43487:CDS |
| TGCTGCAATAGCTGCCCCAA+TGG | 0.561374 | 8.4:-153189 | None:intergenic |
| AGGATGCCTGATGGGGTGCA+TGG | 0.561500 | 8.4:+136544 | MS.gene43487:intron |
| TAAGTTGTGGAGGTTTCCCT+GGG | 0.562219 | 8.4:-134687 | None:intergenic |
| GAAGATTAGAAGTGCACTTG+AGG | 0.562341 | 8.4:+155121 | MS.gene43487:CDS |
| CGCGTCAGCCTTAGCACATG+AGG | 0.562940 | 8.4:+154801 | MS.gene43487:CDS |
| GGATTAAGGTTGTTGACCCA+GGG | 0.563667 | 8.4:+134671 | MS.gene43487:intron |
| ACGTTATGAAAGTGAAGGGT+GGG | 0.565450 | 8.4:+155159 | MS.gene43487:CDS |
| GTTTGTTCTTCAGGTTTACA+GGG | 0.567980 | 8.4:+154576 | MS.gene43487:CDS |
| GATTAGAAGTGCACTTGAGG+TGG | 0.569309 | 8.4:+155124 | MS.gene43487:CDS |
| GCAATTGCAATATAAACAGA+TGG | 0.574141 | 8.4:-154643 | None:intergenic |
| GATATGGCATTTCAAACTGC+TGG | 0.574183 | 8.4:+155308 | MS.gene43487:CDS |
| CATATCATGCATTATACCCA+AGG | 0.575550 | 8.4:+135913 | MS.gene43487:CDS |
| AGCAAACTTCTTGTCACCAG+TGG | 0.578708 | 8.4:-154608 | None:intergenic |
| AGTCAAGTTCCCTGGAGGAA+GGG | 0.579528 | 8.4:+153277 | MS.gene43487:CDS |
| TGTAATAAACCCTTCCTCCA+GGG | 0.581327 | 8.4:-153286 | None:intergenic |
| TAGCCATATGGGCAATGCAG+TGG | 0.582269 | 8.4:+155551 | MS.gene43487:CDS |
| ACATTACGCTGAGCATCAGA+TGG | 0.582710 | 8.4:-153224 | None:intergenic |
| GTGATGGACAATTGGTATCA+AGG | 0.587742 | 8.4:+154446 | MS.gene43487:CDS |
| TCTCATGCTAGGATGCCTGA+TGG | 0.588251 | 8.4:+136535 | MS.gene43487:intron |
| TCAGCCTTAGCACATGAGGT+TGG | 0.589447 | 8.4:+154805 | MS.gene43487:CDS |
| AGCCATATGGGCAATGCAGT+GGG | 0.592770 | 8.4:+155552 | MS.gene43487:CDS |
| GTGTTTCAGTAAAATTCAGA+TGG | 0.594344 | 8.4:-153142 | None:intergenic |
| ATGCATTATACCCAAGGGCA+TGG | 0.597114 | 8.4:+135919 | MS.gene43487:CDS |
| GCACATGAGGTTGGAGACAA+GGG | 0.597566 | 8.4:+154814 | MS.gene43487:CDS |
| CAGCAGCAGAAGAGTTGTTG+TGG | 0.597928 | 8.4:-134533 | None:intergenic |
| ATGGCATTTCAAACTGCTGG+TGG | 0.598083 | 8.4:+155311 | MS.gene43487:CDS |
| AGCCATTTACTTCAGACCAC+GGG | 0.600886 | 8.4:-154510 | None:intergenic |
| TGTTATACCCCATAATTACA+AGG | 0.602139 | 8.4:+136092 | MS.gene43487:CDS |
| CTTTACTACCTGAATTCTGG+GGG | 0.604887 | 8.4:+153873 | MS.gene43487:CDS |
| GCGCCATAGACGATAACCAA+TGG | 0.605451 | 8.4:-134881 | None:intergenic |
| ATTATGTCTAGATCCCATGC+TGG | 0.605498 | 8.4:+155640 | MS.gene43487:CDS |
| AGCATCAGGAATTGAAACAT+GGG | 0.607629 | 8.4:+135863 | MS.gene43487:CDS |
| TGGACAATTGGTATCAAGGA+AGG | 0.608068 | 8.4:+154450 | MS.gene43487:CDS |
| CTACTCTCCTTGTAATTATG+GGG | 0.608714 | 8.4:-136099 | None:intergenic |
| TAACAACGTTATGAAAGTGA+AGG | 0.608841 | 8.4:+155154 | MS.gene43487:CDS |
| AACAACGTTATGAAAGTGAA+GGG | 0.612047 | 8.4:+155155 | MS.gene43487:CDS |
| TATGCAGACTTTGATGCAGG+TGG | 0.613227 | 8.4:-154214 | None:intergenic |
| AAGATGAAACTCTTGTGTGA+TGG | 0.614265 | 8.4:+154430 | MS.gene43487:CDS |
| AACGTTATGAAAGTGAAGGG+TGG | 0.614586 | 8.4:+155158 | MS.gene43487:CDS |
| TGAAGAAGCTGCCAAAGGAA+GGG | 0.616650 | 8.4:+134912 | MS.gene43487:CDS |
| ATCAGATATGAATCCATCCA+AGG | 0.619615 | 8.4:-154101 | None:intergenic |
| GTTCATTCAAAAGGGTAACA+GGG | 0.620778 | 8.4:-153851 | None:intergenic |
| CAAGAAGGGGAAGAAAACAT+TGG | 0.621871 | 8.4:+154253 | MS.gene43487:CDS |
| ATATTAACTAAACTATGCAC+AGG | 0.622452 | 8.4:-154061 | None:intergenic |
| TCATGCTAGGATGCCTGATG+GGG | 0.622952 | 8.4:+136537 | MS.gene43487:intron |
| TGCATTCAGAATTCTGTTGG+AGG | 0.623578 | 8.4:+136358 | MS.gene43487:intron |
| TTGTATTTGCTCAACTACTG+TGG | 0.625108 | 8.4:-154188 | None:intergenic |
| TAGCCATTTACTTCAGACCA+CGG | 0.625843 | 8.4:-154511 | None:intergenic |
| CTGATCAAACCTATGACACA+TGG | 0.628166 | 8.4:+154722 | MS.gene43487:CDS |
| AAGGGCATGGACAGTACATG+AGG | 0.628910 | 8.4:+135932 | MS.gene43487:CDS |
| GTATCTCAGCGAAGGACATG+TGG | 0.629934 | 8.4:+136779 | MS.gene43487:CDS |
| CAATTTGACAAGGATGGTGA+CGG | 0.631917 | 8.4:+154676 | MS.gene43487:CDS |
| CTGATCAATTAGCTGGACAA+TGG | 0.631978 | 8.4:+154956 | MS.gene43487:CDS |
| TGGCATTTCAAACTGCTGGT+GGG | 0.633737 | 8.4:+155312 | MS.gene43487:CDS |
| TCACGAGGGTATCTCAGCGA+AGG | 0.634127 | 8.4:+136771 | MS.gene43487:CDS |
| TCACCTTCTAAAGTTGAAGG+AGG | 0.634605 | 8.4:+155678 | MS.gene43487:CDS |
| TTATATGGACCAATTTGACA+AGG | 0.635555 | 8.4:+154666 | MS.gene43487:CDS |
| GACGGAATGATTGAGAATGA+AGG | 0.637589 | 8.4:+154694 | MS.gene43487:CDS |
| ATGTGTCATAGGTTTGATCA+GGG | 0.637661 | 8.4:-154720 | None:intergenic |
| GGAAACCTCCACAACTTACG+TGG | 0.637742 | 8.4:+134692 | MS.gene43487:CDS |
| CTCATGTGCTAAGGCTGACG+CGG | 0.639032 | 8.4:-154800 | None:intergenic |
| TCTGGTGTAAGTGCGTATAG+TGG | 0.639365 | 8.4:+154751 | MS.gene43487:CDS |
| TACAGTCCATGTGAAAAGCA+AGG | 0.643728 | 8.4:-136273 | None:intergenic |
| ATCTTTATAATACAGATAGG+TGG | 0.643909 | 8.4:+154536 | MS.gene43487:CDS |
| GTTCGTGAAGAAGCTGCCAA+AGG | 0.646721 | 8.4:+134907 | MS.gene43487:CDS |
| AAGGAATCGAGTATCAAATG+TGG | 0.647406 | 8.4:+154293 | MS.gene43487:CDS |
| AAAGTGAAGGGTGGGAAACG+AGG | 0.648414 | 8.4:+155167 | MS.gene43487:CDS |
| ACTTTACTACCTGAATTCTG+GGG | 0.654251 | 8.4:+153872 | MS.gene43487:CDS |
| GAAGCTGCATGGTCTAGTGA+TGG | 0.655500 | 8.4:+155341 | MS.gene43487:CDS |
| GTGGGATATATGAAGCTGCA+TGG | 0.659862 | 8.4:+155330 | MS.gene43487:CDS |
| ATTCAAGCGTACTATGCCCA+GGG | 0.662435 | 8.4:+135515 | MS.gene43487:CDS |
| GGTGTAAGTGCGTATAGTGG+TGG | 0.665798 | 8.4:+154754 | MS.gene43487:CDS |
| AGTAAGTCTTCTCCAAGAAG+GGG | 0.666737 | 8.4:+154240 | MS.gene43487:CDS |
| ATATCATGCATTATACCCAA+GGG | 0.677181 | 8.4:+135914 | MS.gene43487:CDS |
| TAATAAATCTGATGTGTACG+AGG | 0.680587 | 8.4:+155612 | MS.gene43487:CDS |
| TCACTGATTCCAATATCATG+AGG | 0.687909 | 8.4:-154487 | None:intergenic |
| TGATGTAGAACATTGTCAGT+GGG | 0.690773 | 8.4:+153697 | MS.gene43487:intron |
| TAAATGGGATGTTACCTGAT+GGG | 0.692986 | 8.4:+155195 | MS.gene43487:CDS |
| GAAGAAAATGAACAAGAACA+TGG | 0.694841 | 8.4:+134510 | MS.gene43487:CDS |
| AACCAGATATAACAAAGACA+GGG | 0.697803 | 8.4:-136747 | None:intergenic |
| TTGGCAAAGACCAATCCTTG+AGG | 0.699228 | 8.4:+153736 | MS.gene43487:CDS |
| ATATTGGAATCAGTGACCCG+TGG | 0.701495 | 8.4:+154494 | MS.gene43487:CDS |
| GTAAATGGGATGTTACCTGA+TGG | 0.701672 | 8.4:+155194 | MS.gene43487:CDS |
| CCTGAAGTCAAGTTCCCTGG+AGG | 0.702199 | 8.4:+153272 | MS.gene43487:CDS |
| AGGGCATGGACAGTACATGA+GGG | 0.704483 | 8.4:+135933 | MS.gene43487:CDS |
| AAAACCAGGATCATCCATTG+GGG | 0.713022 | 8.4:+153175 | MS.gene43487:CDS |
| GTGATGTAGAACATTGTCAG+TGG | 0.718010 | 8.4:+153696 | MS.gene43487:intron |
| TTTACTACCTGAATTCTGGG+GGG | 0.733229 | 8.4:+153874 | MS.gene43487:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 134489 | 155765 | 134489 | ID=MS.gene43487 |
| chr8.4 | mRNA | 134489 | 155765 | 134489 | ID=MS.gene43487.t1;Parent=MS.gene43487 |
| chr8.4 | exon | 134489 | 134575 | 134489 | ID=MS.gene43487.t1.exon1;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 134489 | 134575 | 134489 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 134679 | 134792 | 134679 | ID=MS.gene43487.t1.exon2;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 134679 | 134792 | 134679 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 134877 | 134933 | 134877 | ID=MS.gene43487.t1.exon3;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 134877 | 134933 | 134877 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 135033 | 135103 | 135033 | ID=MS.gene43487.t1.exon4;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 135033 | 135103 | 135033 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 135178 | 135277 | 135178 | ID=MS.gene43487.t1.exon5;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 135178 | 135277 | 135178 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 135484 | 135554 | 135484 | ID=MS.gene43487.t1.exon6;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 135484 | 135554 | 135484 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 135854 | 135954 | 135854 | ID=MS.gene43487.t1.exon7;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 135854 | 135954 | 135854 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 136049 | 136149 | 136049 | ID=MS.gene43487.t1.exon8;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 136049 | 136149 | 136049 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 136239 | 136292 | 136239 | ID=MS.gene43487.t1.exon9;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 136239 | 136292 | 136239 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 136367 | 136422 | 136367 | ID=MS.gene43487.t1.exon10;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 136367 | 136422 | 136367 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 136546 | 136584 | 136546 | ID=MS.gene43487.t1.exon11;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 136546 | 136584 | 136546 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 136672 | 136816 | 136672 | ID=MS.gene43487.t1.exon12;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 136672 | 136816 | 136672 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 153128 | 153309 | 153128 | ID=MS.gene43487.t1.exon13;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 153128 | 153309 | 153128 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 153384 | 153451 | 153384 | ID=MS.gene43487.t1.exon14;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 153384 | 153451 | 153384 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 153705 | 153777 | 153705 | ID=MS.gene43487.t1.exon15;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 153705 | 153777 | 153705 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 153848 | 153909 | 153848 | ID=MS.gene43487.t1.exon16;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 153848 | 153909 | 153848 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 154050 | 154977 | 154050 | ID=MS.gene43487.t1.exon17;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 154050 | 154977 | 154050 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 155079 | 155369 | 155079 | ID=MS.gene43487.t1.exon18;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 155079 | 155369 | 155079 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| chr8.4 | exon | 155480 | 155765 | 155480 | ID=MS.gene43487.t1.exon19;Parent=MS.gene43487.t1 |
| chr8.4 | CDS | 155480 | 155765 | 155480 | ID=cds.MS.gene43487.t1;Parent=MS.gene43487.t1 |
| Gene Sequence |
| Protein sequence |
