Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042041.t1 | XP_013458726.1 | 98.1 | 931 | 18 | 0 | 26 | 956 | 30 | 960 | 0.00E+00 | 1898.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042041.t1 | Q9HCG7 | 38.6 | 859 | 440 | 15 | 54 | 897 | 106 | 892 | 2.2e-166 | 587.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042041.t1 | A0A072UUL4 | 98.1 | 931 | 18 | 0 | 26 | 956 | 30 | 960 | 0.0e+00 | 1898.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042041 | MS.gene004694 | PPI |
| MS.gene042041 | MS.gene40011 | PPI |
| MS.gene036249 | MS.gene042041 | PPI |
| MS.gene042041 | MS.gene32077 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042041.t1 | MTR_4g134760 | 97.388 | 957 | 22 | 2 | 1 | 956 | 6 | 960 | 0.0 | 1946 |
| MS.gene042041.t1 | MTR_4g134760 | 98.079 | 781 | 15 | 0 | 176 | 956 | 1 | 781 | 0.0 | 1606 |
| MS.gene042041.t1 | MTR_4g134760 | 97.971 | 690 | 14 | 0 | 267 | 956 | 1 | 690 | 0.0 | 1416 |
| MS.gene042041.t1 | MTR_1g072720 | 51.310 | 916 | 396 | 13 | 26 | 899 | 36 | 943 | 0.0 | 884 |
| MS.gene042041.t1 | MTR_1g072720 | 51.310 | 916 | 396 | 13 | 26 | 899 | 36 | 943 | 0.0 | 882 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042041.t1 | AT5G49900 | 68.550 | 938 | 285 | 5 | 26 | 956 | 23 | 957 | 0.0 | 1335 |
| MS.gene042041.t1 | AT5G49900 | 68.550 | 938 | 285 | 5 | 26 | 956 | 23 | 957 | 0.0 | 1335 |
| MS.gene042041.t1 | AT1G33700 | 62.260 | 938 | 333 | 9 | 24 | 948 | 10 | 939 | 0.0 | 1183 |
| MS.gene042041.t1 | AT1G33700 | 62.260 | 938 | 333 | 9 | 24 | 948 | 10 | 939 | 0.0 | 1183 |
| MS.gene042041.t1 | AT1G33700 | 62.260 | 938 | 333 | 9 | 24 | 948 | 10 | 939 | 0.0 | 1183 |
| MS.gene042041.t1 | AT4G10060 | 59.791 | 955 | 337 | 13 | 7 | 952 | 2 | 918 | 0.0 | 1119 |
| MS.gene042041.t1 | AT4G10060 | 59.791 | 955 | 337 | 13 | 7 | 952 | 2 | 918 | 0.0 | 1119 |
| MS.gene042041.t1 | AT1G33700 | 63.412 | 850 | 292 | 8 | 24 | 862 | 10 | 851 | 0.0 | 1096 |
| MS.gene042041.t1 | AT5G49900 | 68.247 | 696 | 214 | 3 | 267 | 956 | 1 | 695 | 0.0 | 979 |
| MS.gene042041.t1 | AT3G24180 | 53.093 | 889 | 386 | 12 | 27 | 899 | 31 | 904 | 0.0 | 918 |
| MS.gene042041.t1 | AT3G24180 | 53.093 | 889 | 386 | 12 | 27 | 899 | 31 | 904 | 0.0 | 918 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTACATACGTACCTTTA+TGG | 0.101704 | 8.3:-99902 | None:intergenic |
| TTATATTGCAATTGCTTATA+TGG | 0.167148 | 8.3:+107946 | MS.gene042041:CDS |
| GATATGCAGCTGAATAATTT+TGG | 0.177641 | 8.3:+101563 | MS.gene042041:intron |
| AGCTACTCTCCTTGTAATTA+TGG | 0.181605 | 8.3:-101434 | None:intergenic |
| ATTGCACATGATGCTATTAT+TGG | 0.193368 | 8.3:+106725 | MS.gene042041:CDS |
| GAACTTTACTACCTGAATTC+TGG | 0.214389 | 8.3:+107165 | MS.gene042041:CDS |
| TCTTCTCATGGTGTTCCTTT+AGG | 0.215555 | 8.3:+100408 | MS.gene042041:CDS |
| TGCCCTGTCTTTGTTATATC+TGG | 0.218998 | 8.3:+102078 | MS.gene042041:CDS |
| TTCTTTATATCTGGCTTCCC+TGG | 0.228231 | 8.3:-100868 | None:intergenic |
| GGTTTCTCTTCACAAGTTAA+AGG | 0.240637 | 8.3:-100569 | None:intergenic |
| ATGGCCTACTTCTTTATATC+TGG | 0.255739 | 8.3:-100877 | None:intergenic |
| GGGAAACGAGGAGCTGTAAA+TGG | 0.259382 | 8.3:+108474 | MS.gene042041:CDS |
| CTGGAGGAAGGGTTTATTAC+AGG | 0.269362 | 8.3:+106583 | MS.gene042041:CDS |
| AGTTTGTTCTTCAGGTTTAC+AGG | 0.271227 | 8.3:+107870 | MS.gene042041:CDS |
| GTCTTTGCCAATCTTCAATC+TGG | 0.274651 | 8.3:-107019 | None:intergenic |
| TGGATCCAGAAGTCTATTTC+AGG | 0.293234 | 8.3:+109000 | MS.gene042041:CDS |
| AGTTCATTCAAAAGGGTAAC+AGG | 0.294104 | 8.3:-107147 | None:intergenic |
| CACAAGAGTTTCATCTTTCC+AGG | 0.294891 | 8.3:-107719 | None:intergenic |
| GAATCCAAAGTTTGTTCTTC+AGG | 0.297782 | 8.3:+107862 | MS.gene042041:CDS |
| CTCCCATTGGTTATCGTCTA+TGG | 0.306009 | 8.3:+100204 | MS.gene042041:CDS |
| CAGTCCAAGCTTCCGGAGTT+TGG | 0.310319 | 8.3:-108784 | None:intergenic |
| CGTCACCATCCTTGTCAAAT+TGG | 0.317306 | 8.3:-107970 | None:intergenic |
| GAAAACTGATTGGCTAAAAC+TGG | 0.334903 | 8.3:-100590 | None:intergenic |
| CCTCCAGGGAACTTGACTTC+AGG | 0.335725 | 8.3:-106567 | None:intergenic |
| TGCATTGCCCATATGGCTAA+TGG | 0.348844 | 8.3:-108842 | None:intergenic |
| TATAACCTGAAATAGACTTC+TGG | 0.351243 | 8.3:-109005 | None:intergenic |
| AACTTTACTACCTGAATTCT+GGG | 0.352039 | 8.3:+107166 | MS.gene042041:CDS |
| TCTCCTCCTTCAACTTTAGA+AGG | 0.354918 | 8.3:-108976 | None:intergenic |
| GGTGCTGTTCCTCATGATAT+TGG | 0.358561 | 8.3:+107773 | MS.gene042041:CDS |
| TGAACACTAAGTTCAAGTTT+TGG | 0.361098 | 8.3:-107662 | None:intergenic |
| CCAGGAAAACATGACTGATA+TGG | 0.362330 | 8.3:+108587 | MS.gene042041:CDS |
| GGTAGTAAAGTTCATTCAAA+AGG | 0.366090 | 8.3:-107155 | None:intergenic |
| GCTACTCTCCTTGTAATTAT+GGG | 0.370281 | 8.3:-101433 | None:intergenic |
| TTCCTTCAAGATAAAGAAAC+TGG | 0.371553 | 8.3:-107571 | None:intergenic |
| GGCCAGTTTCTTTATCTTGA+AGG | 0.374193 | 8.3:+107569 | MS.gene042041:CDS |
| GTAAGTTGTGGAGGTTTCCC+TGG | 0.375069 | 8.3:-100018 | None:intergenic |
| TCTTTAGCAGTCCAAGCTTC+CGG | 0.375607 | 8.3:-108791 | None:intergenic |
| GACCCGTGGTCTGAAGTAAA+TGG | 0.376965 | 8.3:+107803 | MS.gene042041:CDS |
| CAATGCAATCACGAGAAATA+TGG | 0.384729 | 8.3:+108529 | MS.gene042041:CDS |
| TTGTAATTATGGGGTATAAC+AGG | 0.385814 | 8.3:-101423 | None:intergenic |
| CATGTTTCAATTCCTGATGC+TGG | 0.388402 | 8.3:-101194 | None:intergenic |
| TCATGTACTGTCCATGCCCT+TGG | 0.389887 | 8.3:-101263 | None:intergenic |
| TTGGTATCAAGGAAGGTTCT+TGG | 0.391628 | 8.3:+107752 | MS.gene042041:CDS |
| ATAACTGATAAGTACCATTC+AGG | 0.394501 | 8.3:-107065 | None:intergenic |
| GTGTTCCTTTAGGTGGTGTT+GGG | 0.394512 | 8.3:+100418 | MS.gene042041:CDS |
| GTGCATAGTTTAGTTAATAT+AGG | 0.394589 | 8.3:+107359 | MS.gene042041:CDS |
| TTTAGAGAAAATCCAGCATC+AGG | 0.398014 | 8.3:+101182 | MS.gene042041:intron |
| TGCCCACTGCATTGCCCATA+TGG | 0.403270 | 8.3:-108849 | None:intergenic |
| ATCTTCTCTTCTCCAACAAT+TGG | 0.403373 | 8.3:-108399 | None:intergenic |
| TAAACCTGAAGAACAAACTT+TGG | 0.405705 | 8.3:-107866 | None:intergenic |
| AAGATTAAGTACCCTTCCTT+TGG | 0.413526 | 8.3:-100249 | None:intergenic |
| TGATGCTGATGTTGCCATAA+AGG | 0.413661 | 8.3:+99888 | MS.gene042041:CDS |
| TCATAATGTCGAGCGAGCTT+TGG | 0.416449 | 8.3:-108881 | None:intergenic |
| AGCTAATTGATCAGCTTGTA+TGG | 0.417046 | 8.3:-108242 | None:intergenic |
| CTGGATCATTGTTGCAGCTA+AGG | 0.420338 | 8.3:-108568 | None:intergenic |
| CTCCAGGGAACTTGACTTCA+GGG | 0.421106 | 8.3:-106566 | None:intergenic |
| GGGGTATAACAGGTGAAATC+TGG | 0.423473 | 8.3:-101413 | None:intergenic |
| GGTGTTCCTTTAGGTGGTGT+TGG | 0.426591 | 8.3:+100417 | MS.gene042041:CDS |
| ATTGTGGGTAGCAGCACTTC+AGG | 0.426923 | 8.3:+108072 | MS.gene042041:CDS |
| CTCATGCTAGGATGCCTGAT+GGG | 0.430554 | 8.3:+101869 | MS.gene042041:intron |
| TATGACACATGGTCTGTATC+TGG | 0.434538 | 8.3:+108028 | MS.gene042041:CDS |
| CATGTGTCATAGGTTTGATC+AGG | 0.436014 | 8.3:-108016 | None:intergenic |
| TTCAATTATGATAGCAGTTG+TGG | 0.438208 | 8.3:+108205 | MS.gene042041:CDS |
| ACATGCGCCCATTAGCCATA+TGG | 0.439365 | 8.3:+108834 | MS.gene042041:CDS |
| CATGTACTGTCCATGCCCTT+GGG | 0.439924 | 8.3:-101262 | None:intergenic |
| AGATACAGACCATGTGTCAT+AGG | 0.442430 | 8.3:-108026 | None:intergenic |
| CATGTGGCATGAAATTAAAC+AGG | 0.442480 | 8.3:+102128 | MS.gene042041:CDS |
| AGAAGTTTGCTCAAGCTGTC+TGG | 0.449380 | 8.3:+107915 | MS.gene042041:CDS |
| TCTTTATATCTGGCTTCCCT+GGG | 0.451028 | 8.3:-100867 | None:intergenic |
| CAAAACCAGGATCATCCATT+GGG | 0.452311 | 8.3:+106469 | MS.gene042041:CDS |
| CCTGCATCAAAGTCTGCATA+TGG | 0.454083 | 8.3:+107512 | MS.gene042041:CDS |
| CTTTCCAAACTCCGGAAGCT+TGG | 0.457462 | 8.3:+108780 | MS.gene042041:CDS |
| GGAGGACAATCAGAATTTAC+TGG | 0.458343 | 8.3:+101709 | MS.gene042041:CDS |
| TTCTTCAGTTCAGGAAGCAT+TGG | 0.463698 | 8.3:+100506 | MS.gene042041:intron |
| AGCTCACCTTCTAAAGTTGA+AGG | 0.465658 | 8.3:+108970 | MS.gene042041:CDS |
| GCATTGCCCATATGGCTAAT+GGG | 0.470463 | 8.3:-108841 | None:intergenic |
| CATGCGCCCATTAGCCATAT+GGG | 0.474287 | 8.3:+108835 | MS.gene042041:CDS |
| TCTTTGCCAATCTTCAATCT+GGG | 0.475057 | 8.3:-107018 | None:intergenic |
| ACTTGAACTTAGTGTTCAAA+GGG | 0.475209 | 8.3:+107667 | MS.gene042041:CDS |
| TGCGTATAGTGGTGGATTGT+GGG | 0.476030 | 8.3:+108057 | MS.gene042041:CDS |
| CTGTAATAAACCCTTCCTCC+AGG | 0.476382 | 8.3:-106582 | None:intergenic |
| TTCTGAGACATGAACATGTT+CGG | 0.477944 | 8.3:-102055 | None:intergenic |
| AGCACACCATGCACCCCATC+AGG | 0.478586 | 8.3:-101883 | None:intergenic |
| GTGTGCATTCAGAATTCTGT+TGG | 0.480309 | 8.3:+101688 | MS.gene042041:intron |
| CAGGAATTGAAACATGGGAT+TGG | 0.480599 | 8.3:+101201 | MS.gene042041:CDS |
| TGGATTAAGGTTGTTGACCC+AGG | 0.480995 | 8.3:+100000 | MS.gene042041:intron |
| TGCCCTGAAGTCAAGTTCCC+TGG | 0.483440 | 8.3:+106564 | MS.gene042041:CDS |
| TCTTCAGGTTTACAGGGATG+TGG | 0.485017 | 8.3:+107877 | MS.gene042041:CDS |
| TACAGGGATGTGGTTGCCAC+TGG | 0.485316 | 8.3:+107887 | MS.gene042041:CDS |
| GCATGGTCTAGTGATGGTCT+CGG | 0.487694 | 8.3:+108642 | MS.gene042041:CDS |
| GAGTAAGTCTTCTCCAAGAA+GGG | 0.489356 | 8.3:+107534 | MS.gene042041:CDS |
| GAACCAGATATAACAAAGAC+AGG | 0.489794 | 8.3:-102081 | None:intergenic |
| AATCATCTCTTTGAAAGATA+AGG | 0.491279 | 8.3:-100094 | None:intergenic |
| GTGCGTATAGTGGTGGATTG+TGG | 0.492982 | 8.3:+108056 | MS.gene042041:CDS |
| CTAAAGTTGAAGGAGGAGAC+TGG | 0.493503 | 8.3:+108980 | MS.gene042041:CDS |
| ACTCTTGTGTGATGGACAAT+TGG | 0.494421 | 8.3:+107733 | MS.gene042041:CDS |
| CAGGAAATCTCTTGTCCTCA+AGG | 0.495256 | 8.3:-107046 | None:intergenic |
| TGGCAGCTTCTTCACGAACA+TGG | 0.498458 | 8.3:-100229 | None:intergenic |
| ATACAAGCTGATCAATTAGC+TGG | 0.499352 | 8.3:+108244 | MS.gene042041:CDS |
| AACTTGAACTTAGTGTTCAA+AGG | 0.499425 | 8.3:+107666 | MS.gene042041:CDS |
| AGGACAAGAGATTTCCTGAA+TGG | 0.500451 | 8.3:+107051 | MS.gene042041:CDS |
| GTCTCCAACCTCATGTGCTA+AGG | 0.502611 | 8.3:-108104 | None:intergenic |
| GTTACATGACGCTTAGCAAA+AGG | 0.503532 | 8.3:-100384 | None:intergenic |
| CGCTGCCACGTAAGTTGTGG+AGG | 0.506213 | 8.3:-100027 | None:intergenic |
| ATAATCTTTATAATACAGAT+AGG | 0.506994 | 8.3:+107828 | MS.gene042041:CDS |
| TCAAAACCAGGATCATCCAT+TGG | 0.508472 | 8.3:+106468 | MS.gene042041:CDS |
| AAAACTTACAGAAAACTGAT+TGG | 0.512269 | 8.3:-100600 | None:intergenic |
| GCAGTACTGATGCATGATCC+TGG | 0.513335 | 8.3:+107701 | MS.gene042041:CDS |
| CGCCATAGACGATAACCAAT+GGG | 0.513371 | 8.3:-100206 | None:intergenic |
| ACATGGGATTGGAATATGAA+TGG | 0.513380 | 8.3:+101212 | MS.gene042041:CDS |
| GACATGTCAACATTCCCATC+AGG | 0.520071 | 8.3:-108504 | None:intergenic |
| TATTCAAGCGTACTATGCCC+AGG | 0.520326 | 8.3:+100850 | MS.gene042041:CDS |
| TCTCATGGTGTTCCTTTAGG+TGG | 0.521227 | 8.3:+100411 | MS.gene042041:CDS |
| CTTAGCTGCAACAATGATCC+AGG | 0.521713 | 8.3:+108569 | MS.gene042041:CDS |
| CAGCATCAGGAATTGAAACA+TGG | 0.526613 | 8.3:+101195 | MS.gene042041:CDS |
| CAATCACGAGAAATATGGTC+AGG | 0.527149 | 8.3:+108534 | MS.gene042041:CDS |
| AGCACATGAGGTTGGAGACA+AGG | 0.527943 | 8.3:+108108 | MS.gene042041:CDS |
| TTGCGCTGCCACGTAAGTTG+TGG | 0.532147 | 8.3:-100030 | None:intergenic |
| AATCTCTTGTCCTCAAGGAT+TGG | 0.532991 | 8.3:-107041 | None:intergenic |
| GGAAACGAGGAGCTGTAAAT+GGG | 0.534811 | 8.3:+108475 | MS.gene042041:CDS |
| GGGAGTCCCAGATTGAAGAT+TGG | 0.537150 | 8.3:+107012 | MS.gene042041:CDS |
| GGAGTAAGTCTTCTCCAAGA+AGG | 0.537592 | 8.3:+107533 | MS.gene042041:CDS |
| TGCAGGTATGCTAGAGCATG+TGG | 0.537618 | 8.3:+108369 | MS.gene042041:intron |
| AAAGATAAGGTGAATTCCGA+TGG | 0.538626 | 8.3:-100081 | None:intergenic |
| GTTATATCTGGTTCTCACGA+GGG | 0.540028 | 8.3:+102090 | MS.gene042041:CDS |
| GTGAAGAAGCTGCCAAAGGA+AGG | 0.540272 | 8.3:+100237 | MS.gene042041:CDS |
| AGCTGCAATTGCAAATGTGA+CGG | 0.546271 | 8.3:-102025 | None:intergenic |
| CATGGTCTAGTGATGGTCTC+GGG | 0.546754 | 8.3:+108643 | MS.gene042041:CDS |
| ACCCACCCAACACCACCTAA+AGG | 0.546866 | 8.3:-100423 | None:intergenic |
| TTACAGGTCAATTTCAGCGT+TGG | 0.546996 | 8.3:+100537 | MS.gene042041:CDS |
| CAGTTATTCTTTCCAAACTC+CGG | 0.549508 | 8.3:+108772 | MS.gene042041:intron |
| AAGTCAAGTTCCCTGGAGGA+AGG | 0.550116 | 8.3:+106571 | MS.gene042041:CDS |
| TATATGACTTTACTTGCAAG+AGG | 0.552672 | 8.3:+109026 | MS.gene042041:CDS |
| CGTCATGTAACTTCTTCTCA+TGG | 0.553671 | 8.3:+100396 | MS.gene042041:CDS |
| ACACCTGTGCCTTCAAAACC+AGG | 0.554288 | 8.3:+106456 | MS.gene042041:CDS |
| TGTTATATCTGGTTCTCACG+AGG | 0.555097 | 8.3:+102089 | MS.gene042041:CDS |
| GCTGCCCCAATGGATGATCC+TGG | 0.555639 | 8.3:-106474 | None:intergenic |
| ATGGACCAATTTGACAAGGA+TGG | 0.556149 | 8.3:+107965 | MS.gene042041:CDS |
| CCATATGCAGACTTTGATGC+AGG | 0.556702 | 8.3:-107512 | None:intergenic |
| GTAGTAAAGTTCATTCAAAA+GGG | 0.558497 | 8.3:-107154 | None:intergenic |
| GCTGCAATTGCAAATGTGAC+GGG | 0.559690 | 8.3:-102024 | None:intergenic |
| TGCAAATGCAAATGTTCCAT+CGG | 0.560180 | 8.3:+100065 | MS.gene042041:CDS |
| TGCTGCAATAGCTGCCCCAA+TGG | 0.561374 | 8.3:-106484 | None:intergenic |
| AGGATGCCTGATGGGGTGCA+TGG | 0.561500 | 8.3:+101877 | MS.gene042041:intron |
| TAAGTTGTGGAGGTTTCCCT+GGG | 0.562219 | 8.3:-100017 | None:intergenic |
| GAAGATTAGAAGTGCACTTG+AGG | 0.562341 | 8.3:+108416 | MS.gene042041:CDS |
| CGCGTCAGCCTTAGCACATG+AGG | 0.562940 | 8.3:+108096 | MS.gene042041:CDS |
| GGATTAAGGTTGTTGACCCA+GGG | 0.563667 | 8.3:+100001 | MS.gene042041:intron |
| ACGTTATGAAAGTGAAGGGT+GGG | 0.565450 | 8.3:+108454 | MS.gene042041:CDS |
| GTTTGTTCTTCAGGTTTACA+GGG | 0.567980 | 8.3:+107871 | MS.gene042041:CDS |
| GATTAGAAGTGCACTTGAGG+TGG | 0.569309 | 8.3:+108419 | MS.gene042041:CDS |
| GCAATTGCAATATAAACAGA+TGG | 0.574141 | 8.3:-107938 | None:intergenic |
| GATATGGCATTTCAAACTGC+TGG | 0.574183 | 8.3:+108603 | MS.gene042041:CDS |
| CATATCATGCATTATACCCA+AGG | 0.575550 | 8.3:+101246 | MS.gene042041:CDS |
| AGCAAACTTCTTGTCACCAG+TGG | 0.578708 | 8.3:-107903 | None:intergenic |
| AGTCAAGTTCCCTGGAGGAA+GGG | 0.579528 | 8.3:+106572 | MS.gene042041:CDS |
| TGTAATAAACCCTTCCTCCA+GGG | 0.581327 | 8.3:-106581 | None:intergenic |
| TAGCCATATGGGCAATGCAG+TGG | 0.582269 | 8.3:+108846 | MS.gene042041:CDS |
| ACATTACGCTGAGCATCAGA+TGG | 0.582710 | 8.3:-106519 | None:intergenic |
| GTGATGGACAATTGGTATCA+AGG | 0.587742 | 8.3:+107741 | MS.gene042041:CDS |
| TCTCATGCTAGGATGCCTGA+TGG | 0.588251 | 8.3:+101868 | MS.gene042041:intron |
| TCAGCCTTAGCACATGAGGT+TGG | 0.589447 | 8.3:+108100 | MS.gene042041:CDS |
| AGCCATATGGGCAATGCAGT+GGG | 0.592770 | 8.3:+108847 | MS.gene042041:CDS |
| GTGTTTCAGTAAAATTCAGA+TGG | 0.594344 | 8.3:-106437 | None:intergenic |
| ATGCATTATACCCAAGGGCA+TGG | 0.597114 | 8.3:+101252 | MS.gene042041:CDS |
| GCACATGAGGTTGGAGACAA+GGG | 0.597566 | 8.3:+108109 | MS.gene042041:CDS |
| CAGCAGCAGAACAGTTGTTG+TGG | 0.597928 | 8.3:-99867 | None:intergenic |
| ATGGCATTTCAAACTGCTGG+TGG | 0.598083 | 8.3:+108606 | MS.gene042041:CDS |
| AGCCATTTACTTCAGACCAC+GGG | 0.600886 | 8.3:-107805 | None:intergenic |
| TGTTATACCCCATAATTACA+AGG | 0.602139 | 8.3:+101425 | MS.gene042041:CDS |
| CTTTACTACCTGAATTCTGG+GGG | 0.604887 | 8.3:+107168 | MS.gene042041:CDS |
| GCGCCATAGACGATAACCAA+TGG | 0.605451 | 8.3:-100207 | None:intergenic |
| ATTATGTCTAGATCCCATGC+TGG | 0.605498 | 8.3:+108935 | MS.gene042041:CDS |
| AGCATCAGGAATTGAAACAT+GGG | 0.607629 | 8.3:+101196 | MS.gene042041:CDS |
| TGGACAATTGGTATCAAGGA+AGG | 0.608068 | 8.3:+107745 | MS.gene042041:CDS |
| CTACTCTCCTTGTAATTATG+GGG | 0.608714 | 8.3:-101432 | None:intergenic |
| TAACAACGTTATGAAAGTGA+AGG | 0.608841 | 8.3:+108449 | MS.gene042041:CDS |
| AACAACGTTATGAAAGTGAA+GGG | 0.612047 | 8.3:+108450 | MS.gene042041:CDS |
| TATGCAGACTTTGATGCAGG+TGG | 0.613227 | 8.3:-107509 | None:intergenic |
| AAGATGAAACTCTTGTGTGA+TGG | 0.614265 | 8.3:+107725 | MS.gene042041:CDS |
| AACGTTATGAAAGTGAAGGG+TGG | 0.614586 | 8.3:+108453 | MS.gene042041:CDS |
| TGAAGAAGCTGCCAAAGGAA+GGG | 0.616650 | 8.3:+100238 | MS.gene042041:CDS |
| GTTCATTCAAAAGGGTAACA+GGG | 0.620778 | 8.3:-107146 | None:intergenic |
| CAAGAAGGGGAAGAAAACAT+TGG | 0.621871 | 8.3:+107548 | MS.gene042041:CDS |
| ATATTAACTAAACTATGCAC+AGG | 0.622452 | 8.3:-107356 | None:intergenic |
| TCATGCTAGGATGCCTGATG+GGG | 0.622952 | 8.3:+101870 | MS.gene042041:intron |
| TGCATTCAGAATTCTGTTGG+AGG | 0.623578 | 8.3:+101691 | MS.gene042041:intron |
| ATCAGAAATGAATCCATCCA+AGG | 0.623678 | 8.3:-107396 | None:intergenic |
| TTGTATTTGCTCAACTACTG+TGG | 0.625108 | 8.3:-107483 | None:intergenic |
| TAGCCATTTACTTCAGACCA+CGG | 0.625843 | 8.3:-107806 | None:intergenic |
| CTGATCAAACCTATGACACA+TGG | 0.628166 | 8.3:+108017 | MS.gene042041:CDS |
| AAGGGCATGGACAGTACATG+AGG | 0.628910 | 8.3:+101265 | MS.gene042041:CDS |
| GTATCTCAGCGAAGGACATG+TGG | 0.629934 | 8.3:+102112 | MS.gene042041:CDS |
| CAATTTGACAAGGATGGTGA+CGG | 0.631917 | 8.3:+107971 | MS.gene042041:CDS |
| CTGATCAATTAGCTGGACAA+TGG | 0.631978 | 8.3:+108251 | MS.gene042041:CDS |
| TGGCATTTCAAACTGCTGGT+GGG | 0.633737 | 8.3:+108607 | MS.gene042041:CDS |
| TCACGAGGGTATCTCAGCGA+AGG | 0.634127 | 8.3:+102104 | MS.gene042041:CDS |
| TCACCTTCTAAAGTTGAAGG+AGG | 0.634605 | 8.3:+108973 | MS.gene042041:CDS |
| TTATATGGACCAATTTGACA+AGG | 0.635555 | 8.3:+107961 | MS.gene042041:CDS |
| GACGGAATGATTGAGAATGA+AGG | 0.637589 | 8.3:+107989 | MS.gene042041:CDS |
| ATGTGTCATAGGTTTGATCA+GGG | 0.637661 | 8.3:-108015 | None:intergenic |
| GGAAACCTCCACAACTTACG+TGG | 0.637742 | 8.3:+100022 | MS.gene042041:CDS |
| CTCATGTGCTAAGGCTGACG+CGG | 0.639032 | 8.3:-108095 | None:intergenic |
| TCTGGTGTAAGTGCGTATAG+TGG | 0.639365 | 8.3:+108046 | MS.gene042041:CDS |
| TACAGTCCATGTGAAAAGCA+AGG | 0.643728 | 8.3:-101606 | None:intergenic |
| ATCTTTATAATACAGATAGG+TGG | 0.643909 | 8.3:+107831 | MS.gene042041:CDS |
| GTTCGTGAAGAAGCTGCCAA+AGG | 0.646721 | 8.3:+100233 | MS.gene042041:CDS |
| AAGGAATCGAGTATCAAATG+TGG | 0.647406 | 8.3:+107588 | MS.gene042041:CDS |
| AAAGTGAAGGGTGGGAAACG+AGG | 0.648414 | 8.3:+108462 | MS.gene042041:CDS |
| ACTTTACTACCTGAATTCTG+GGG | 0.654251 | 8.3:+107167 | MS.gene042041:CDS |
| GAAGCTGCATGGTCTAGTGA+TGG | 0.655500 | 8.3:+108636 | MS.gene042041:CDS |
| GTGGGATATATGAAGCTGCA+TGG | 0.659862 | 8.3:+108625 | MS.gene042041:CDS |
| ATTCAAGCGTACTATGCCCA+GGG | 0.662435 | 8.3:+100851 | MS.gene042041:CDS |
| GGTGTAAGTGCGTATAGTGG+TGG | 0.665798 | 8.3:+108049 | MS.gene042041:CDS |
| AGTAAGTCTTCTCCAAGAAG+GGG | 0.666737 | 8.3:+107535 | MS.gene042041:CDS |
| ATATCATGCATTATACCCAA+GGG | 0.677181 | 8.3:+101247 | MS.gene042041:CDS |
| TAATAAATCTGATGTGTACG+AGG | 0.680587 | 8.3:+108907 | MS.gene042041:CDS |
| TCACTGATTCCAATATCATG+AGG | 0.687909 | 8.3:-107782 | None:intergenic |
| TGATGTAGAACATTGTCAGT+GGG | 0.690773 | 8.3:+106992 | MS.gene042041:intron |
| TAAATGGGATGTTACCTGAT+GGG | 0.692986 | 8.3:+108490 | MS.gene042041:CDS |
| GAAGAAAATGAACAAGAACA+TGG | 0.694841 | 8.3:+99844 | MS.gene042041:CDS |
| AACCAGATATAACAAAGACA+GGG | 0.697803 | 8.3:-102080 | None:intergenic |
| TTGGCAAAGACCAATCCTTG+AGG | 0.699228 | 8.3:+107031 | MS.gene042041:CDS |
| ATATTGGAATCAGTGACCCG+TGG | 0.701495 | 8.3:+107789 | MS.gene042041:CDS |
| GTAAATGGGATGTTACCTGA+TGG | 0.701672 | 8.3:+108489 | MS.gene042041:CDS |
| CCTGAAGTCAAGTTCCCTGG+AGG | 0.702199 | 8.3:+106567 | MS.gene042041:CDS |
| AGGGCATGGACAGTACATGA+GGG | 0.704483 | 8.3:+101266 | MS.gene042041:CDS |
| AAAACCAGGATCATCCATTG+GGG | 0.713022 | 8.3:+106470 | MS.gene042041:CDS |
| GTGATGTAGAACATTGTCAG+TGG | 0.718010 | 8.3:+106991 | MS.gene042041:intron |
| TTTACTACCTGAATTCTGGG+GGG | 0.733229 | 8.3:+107169 | MS.gene042041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 99838 | 109060 | 99838 | ID=MS.gene042041 |
| chr8.3 | mRNA | 99838 | 109060 | 99838 | ID=MS.gene042041.t1;Parent=MS.gene042041 |
| chr8.3 | exon | 99838 | 99909 | 99838 | ID=MS.gene042041.t1.exon1;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 99838 | 99909 | 99838 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 100009 | 100122 | 100009 | ID=MS.gene042041.t1.exon2;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 100009 | 100122 | 100009 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 100203 | 100259 | 100203 | ID=MS.gene042041.t1.exon3;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 100203 | 100259 | 100203 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 100369 | 100439 | 100369 | ID=MS.gene042041.t1.exon4;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 100369 | 100439 | 100369 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 100514 | 100613 | 100514 | ID=MS.gene042041.t1.exon5;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 100514 | 100613 | 100514 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 100820 | 100890 | 100820 | ID=MS.gene042041.t1.exon6;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 100820 | 100890 | 100820 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 101187 | 101287 | 101187 | ID=MS.gene042041.t1.exon7;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 101187 | 101287 | 101187 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 101382 | 101482 | 101382 | ID=MS.gene042041.t1.exon8;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 101382 | 101482 | 101382 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 101572 | 101625 | 101572 | ID=MS.gene042041.t1.exon9;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 101572 | 101625 | 101572 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 101700 | 101755 | 101700 | ID=MS.gene042041.t1.exon10;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 101700 | 101755 | 101700 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 101879 | 101917 | 101879 | ID=MS.gene042041.t1.exon11;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 101879 | 101917 | 101879 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 102005 | 102149 | 102005 | ID=MS.gene042041.t1.exon12;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 102005 | 102149 | 102005 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 106423 | 106604 | 106423 | ID=MS.gene042041.t1.exon13;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 106423 | 106604 | 106423 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 106679 | 106746 | 106679 | ID=MS.gene042041.t1.exon14;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 106679 | 106746 | 106679 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 107000 | 107072 | 107000 | ID=MS.gene042041.t1.exon15;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 107000 | 107072 | 107000 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 107143 | 107204 | 107143 | ID=MS.gene042041.t1.exon16;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 107143 | 107204 | 107143 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 107345 | 108272 | 107345 | ID=MS.gene042041.t1.exon17;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 107345 | 108272 | 107345 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 108374 | 108664 | 108374 | ID=MS.gene042041.t1.exon18;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 108374 | 108664 | 108374 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| chr8.3 | exon | 108775 | 109060 | 108775 | ID=MS.gene042041.t1.exon19;Parent=MS.gene042041.t1 |
| chr8.3 | CDS | 108775 | 109060 | 108775 | ID=cds.MS.gene042041.t1;Parent=MS.gene042041.t1 |
| Gene Sequence |
| Protein sequence |
