Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004960.t1 | XP_013468853.1 | 93 | 474 | 32 | 1 | 1 | 474 | 1 | 473 | 6.00E-233 | 816.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004960.t1 | O23086 | 49.0 | 447 | 189 | 6 | 5 | 413 | 8 | 453 | 1.8e-116 | 421.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004960.t1 | A0A072VXW6 | 93.0 | 474 | 32 | 1 | 1 | 474 | 1 | 473 | 4.3e-233 | 816.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004960 | MS.gene044738 | PPI |
| MS.gene004960 | MS.gene61659 | PPI |
| MS.gene004960 | MS.gene96117 | PPI |
| MS.gene004960 | MS.gene66665 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004960.t1 | MTR_1g077660 | 94.937 | 474 | 23 | 1 | 1 | 474 | 1 | 473 | 0.0 | 932 |
| MS.gene004960.t1 | MTR_1g077670 | 83.403 | 476 | 73 | 4 | 4 | 474 | 10 | 484 | 0.0 | 808 |
| MS.gene004960.t1 | MTR_7g106260 | 44.622 | 437 | 225 | 5 | 19 | 450 | 11 | 435 | 1.41e-115 | 348 |
| MS.gene004960.t1 | MTR_4g051575 | 44.527 | 402 | 198 | 5 | 37 | 435 | 35 | 414 | 7.59e-111 | 336 |
| MS.gene004960.t1 | MTR_2g087288 | 43.035 | 402 | 213 | 4 | 46 | 443 | 37 | 426 | 4.66e-110 | 333 |
| MS.gene004960.t1 | MTR_1g115140 | 41.622 | 370 | 205 | 4 | 25 | 384 | 16 | 384 | 2.99e-98 | 306 |
| MS.gene004960.t1 | MTR_1g115175 | 34.615 | 520 | 254 | 8 | 23 | 458 | 10 | 527 | 2.71e-97 | 303 |
| MS.gene004960.t1 | MTR_2g087285 | 41.606 | 411 | 221 | 5 | 34 | 439 | 25 | 421 | 3.53e-97 | 300 |
| MS.gene004960.t1 | MTR_1g115190 | 41.667 | 372 | 206 | 5 | 23 | 384 | 11 | 381 | 5.70e-88 | 279 |
| MS.gene004960.t1 | MTR_5g014310 | 40.688 | 349 | 199 | 4 | 42 | 383 | 53 | 400 | 2.34e-84 | 270 |
| MS.gene004960.t1 | MTR_4g098570 | 38.503 | 374 | 218 | 3 | 17 | 384 | 25 | 392 | 1.05e-82 | 265 |
| MS.gene004960.t1 | MTR_7g094770 | 35.878 | 393 | 236 | 4 | 50 | 438 | 60 | 440 | 3.84e-80 | 256 |
| MS.gene004960.t1 | MTR_4g098610 | 39.142 | 373 | 215 | 3 | 17 | 383 | 25 | 391 | 7.67e-77 | 250 |
| MS.gene004960.t1 | MTR_8g104110 | 36.339 | 366 | 213 | 8 | 34 | 382 | 51 | 413 | 2.06e-74 | 244 |
| MS.gene004960.t1 | MTR_8g104130 | 36.314 | 369 | 226 | 6 | 14 | 376 | 23 | 388 | 1.49e-72 | 239 |
| MS.gene004960.t1 | MTR_6g084680 | 35.676 | 370 | 220 | 6 | 24 | 377 | 59 | 426 | 3.86e-72 | 239 |
| MS.gene004960.t1 | MTR_8g104120 | 35.342 | 365 | 216 | 8 | 34 | 382 | 47 | 407 | 5.96e-67 | 225 |
| MS.gene004960.t1 | MTR_4g051575 | 41.216 | 296 | 151 | 5 | 144 | 435 | 4 | 280 | 9.87e-66 | 215 |
| MS.gene004960.t1 | MTR_1g111250 | 32.676 | 355 | 223 | 5 | 40 | 382 | 68 | 418 | 8.22e-64 | 216 |
| MS.gene004960.t1 | MTR_0710s0020 | 48.555 | 173 | 85 | 2 | 23 | 191 | 11 | 183 | 9.83e-44 | 152 |
| MS.gene004960.t1 | MTR_6g015325 | 36.905 | 84 | 51 | 2 | 101 | 184 | 7 | 88 | 8.94e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004960.t1 | AT4G00910 | 49.367 | 474 | 211 | 6 | 5 | 452 | 8 | 478 | 9.53e-164 | 471 |
| MS.gene004960.t1 | AT1G08440 | 43.596 | 406 | 211 | 2 | 36 | 435 | 3 | 396 | 1.12e-117 | 354 |
| MS.gene004960.t1 | AT2G27240 | 42.543 | 409 | 217 | 4 | 36 | 438 | 3 | 399 | 1.84e-112 | 340 |
| MS.gene004960.t1 | AT1G08430 | 40.724 | 442 | 238 | 4 | 36 | 465 | 3 | 432 | 3.53e-111 | 337 |
| MS.gene004960.t1 | AT2G27240 | 40.230 | 435 | 216 | 4 | 36 | 438 | 3 | 425 | 2.91e-109 | 333 |
| MS.gene004960.t1 | AT3G11680 | 43.721 | 430 | 215 | 7 | 18 | 438 | 10 | 421 | 1.31e-107 | 328 |
| MS.gene004960.t1 | AT3G11680 | 43.721 | 430 | 215 | 7 | 18 | 438 | 8 | 419 | 1.39e-107 | 328 |
| MS.gene004960.t1 | AT4G17970 | 37.978 | 366 | 222 | 3 | 21 | 383 | 15 | 378 | 1.41e-89 | 284 |
| MS.gene004960.t1 | AT5G46600 | 37.950 | 361 | 214 | 3 | 32 | 383 | 28 | 387 | 3.42e-88 | 280 |
| MS.gene004960.t1 | AT5G46610 | 36.480 | 392 | 242 | 2 | 9 | 394 | 4 | 394 | 4.37e-88 | 280 |
| MS.gene004960.t1 | AT1G18420 | 35.509 | 383 | 226 | 6 | 19 | 382 | 52 | 432 | 5.35e-75 | 246 |
| MS.gene004960.t1 | AT5G46610 | 33.163 | 392 | 231 | 3 | 9 | 394 | 4 | 370 | 1.95e-74 | 243 |
| MS.gene004960.t1 | AT3G18440 | 37.398 | 369 | 210 | 9 | 30 | 382 | 63 | 426 | 3.66e-74 | 244 |
| MS.gene004960.t1 | AT1G18420 | 36.467 | 351 | 206 | 5 | 47 | 382 | 1 | 349 | 1.08e-71 | 235 |
| MS.gene004960.t1 | AT5G46610 | 32.398 | 392 | 211 | 3 | 9 | 394 | 4 | 347 | 1.60e-67 | 224 |
| MS.gene004960.t1 | AT2G17470 | 33.613 | 357 | 219 | 8 | 34 | 376 | 18 | 370 | 2.75e-62 | 212 |
| MS.gene004960.t1 | AT2G17470 | 33.613 | 357 | 219 | 8 | 34 | 376 | 40 | 392 | 4.79e-62 | 211 |
| MS.gene004960.t1 | AT1G68600 | 34.770 | 348 | 210 | 7 | 43 | 376 | 45 | 389 | 2.48e-60 | 206 |
| MS.gene004960.t1 | AT1G25480 | 33.611 | 360 | 222 | 7 | 30 | 376 | 43 | 398 | 3.86e-59 | 204 |
| MS.gene004960.t1 | AT4G17585 | 43.956 | 91 | 47 | 3 | 21 | 108 | 15 | 104 | 4.77e-16 | 75.9 |
Find 83 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCATTGATGCTCTTAT+TGG | 0.158685 | 1.4:+63645095 | MS.gene004960:CDS |
| ACTTGAATTAATTCTATTAT+TGG | 0.173844 | 1.4:-63645533 | None:intergenic |
| AGAATTTCCACTATTATAAT+TGG | 0.174482 | 1.4:+63644473 | MS.gene004960:CDS |
| TGGAAGCAATATCTTAAAAT+TGG | 0.274268 | 1.4:+63645050 | MS.gene004960:CDS |
| TTGTCACATTTAGACATTTC+AGG | 0.274679 | 1.4:-63645650 | None:intergenic |
| GCATGACTGTTCGCCCTGTT+TGG | 0.280306 | 1.4:+63644519 | MS.gene004960:CDS |
| TTCAGGCTAATTTAGCTAGA+TGG | 0.290212 | 1.4:+63644991 | MS.gene004960:intron |
| AAGATTTATACCAACTATAA+AGG | 0.295645 | 1.4:+63644352 | MS.gene004960:CDS |
| CAATGATTCTTCTGTTGCTT+TGG | 0.297791 | 1.4:-63644837 | None:intergenic |
| CTTCCAACACCATCATATAA+AGG | 0.302727 | 1.4:-63643658 | None:intergenic |
| CTTGAATTAATTCTATTATT+GGG | 0.328345 | 1.4:-63645532 | None:intergenic |
| GTTAGACTCACTTGCTGCTT+GGG | 0.330664 | 1.4:-63644780 | None:intergenic |
| AATTGATGAATTGTTTGATT+TGG | 0.335580 | 1.4:+63644442 | MS.gene004960:CDS |
| GTTGTCTGTTGAATGTTGTT+TGG | 0.338958 | 1.4:-63645675 | None:intergenic |
| AGTGAGGCTCCAACAATTAC+AGG | 0.347390 | 1.4:-63644020 | None:intergenic |
| TTCAGTTTGGTTTCAATATC+CGG | 0.352067 | 1.4:+63644413 | MS.gene004960:CDS |
| ATTTATCCTCACTTTCAGTT+TGG | 0.369853 | 1.4:+63644400 | MS.gene004960:CDS |
| TTCTAGCCTTTGGTGTACAT+TGG | 0.372115 | 1.4:+63643967 | MS.gene004960:CDS |
| TCTAGCCTTTGGTGTACATT+GGG | 0.373912 | 1.4:+63643968 | MS.gene004960:CDS |
| CATGACTGTTCGCCCTGTTT+GGG | 0.375451 | 1.4:+63644520 | MS.gene004960:CDS |
| CTTGCCGGGCTTCTAGCCTT+TGG | 0.375772 | 1.4:+63643957 | MS.gene004960:CDS |
| ATATGTGGAACTACCCTTGC+CGG | 0.376919 | 1.4:+63643942 | MS.gene004960:CDS |
| TCCTCATCATTCTGTTGGTC+TGG | 0.378128 | 1.4:-63645707 | None:intergenic |
| TGGTCTAGAACTCTATGTTT+TGG | 0.392947 | 1.4:+63644544 | MS.gene004960:CDS |
| TTGCCTCCTCATCATTCTGT+TGG | 0.396110 | 1.4:-63645712 | None:intergenic |
| TGTTAGACTCACTTGCTGCT+TGG | 0.402132 | 1.4:-63644781 | None:intergenic |
| TCCTCATTATTCAAACCATC+TGG | 0.403183 | 1.4:-63645748 | None:intergenic |
| TTAATAAATTCTGAAGCTCT+AGG | 0.407771 | 1.4:-63645451 | None:intergenic |
| CAATTCATCAATTCTATAAC+CGG | 0.413490 | 1.4:-63644432 | None:intergenic |
| AGTTCTAGACCAGCCCAAAC+AGG | 0.414800 | 1.4:-63644533 | None:intergenic |
| TGAAGTTCCAATTATAATAG+TGG | 0.434981 | 1.4:-63644480 | None:intergenic |
| CAAAGCAACAGAAGAATCAT+TGG | 0.439510 | 1.4:+63644838 | MS.gene004960:CDS |
| TTTCACAAATTTGCACAACT+TGG | 0.440882 | 1.4:-63643536 | None:intergenic |
| TTCATCCATTGTTTGAAAGT+AGG | 0.446047 | 1.4:+63643595 | MS.gene004960:CDS |
| ACTGTTCGCCCTGTTTGGGC+TGG | 0.446255 | 1.4:+63644524 | MS.gene004960:CDS |
| AACCTAACCTTGCAAAGAGT+TGG | 0.446689 | 1.4:-63644591 | None:intergenic |
| TACTTGAAACCTTTATATGA+TGG | 0.450489 | 1.4:+63643649 | MS.gene004960:CDS |
| TCAGGCTAATTTAGCTAGAT+GGG | 0.451798 | 1.4:+63644992 | MS.gene004960:intron |
| TCAAAACGAGCCTTTATAGT+TGG | 0.456472 | 1.4:-63644362 | None:intergenic |
| GCTAGATGGGAGCCTGCTCA+TGG | 0.466832 | 1.4:+63645005 | MS.gene004960:CDS |
| GAAATTCCAGCTCTCTTCCA+TGG | 0.473583 | 1.4:-63643478 | None:intergenic |
| CAATGGGAACCTGTAATTGT+TGG | 0.475128 | 1.4:+63644011 | MS.gene004960:CDS |
| TGACTAATGAAAAGGTAGAA+TGG | 0.476764 | 1.4:+63643434 | MS.gene004960:CDS |
| CATTGGGTTGCTAGTAAAGC+AGG | 0.488274 | 1.4:+63643984 | MS.gene004960:CDS |
| TTTAAAGATGACTAATGAAA+AGG | 0.488687 | 1.4:+63643426 | None:intergenic |
| AAATTGAAACGCCCATGAGC+AGG | 0.504173 | 1.4:-63645017 | None:intergenic |
| CTGGAATTTCTTGCAGCATG+TGG | 0.508092 | 1.4:+63643491 | MS.gene004960:CDS |
| CTAGTAAAGCAGGAGATCAA+TGG | 0.509667 | 1.4:+63643994 | MS.gene004960:CDS |
| TAGTAAAGCAGGAGATCAAT+GGG | 0.520063 | 1.4:+63643995 | MS.gene004960:CDS |
| GATGGTCCATGGAAGAGAGC+TGG | 0.527590 | 1.4:+63643472 | MS.gene004960:CDS |
| TCCATGGACCATCTTCTACC+TGG | 0.528178 | 1.4:-63643462 | None:intergenic |
| AAAAGTGTAAACAGAATATG+TGG | 0.528989 | 1.4:+63643927 | MS.gene004960:CDS |
| TAATAAATTCTGAAGCTCTA+GGG | 0.530295 | 1.4:-63645450 | None:intergenic |
| TGGAGAGTCCAGGTAGAAGA+TGG | 0.531263 | 1.4:+63643454 | MS.gene004960:CDS |
| TACACCAAAGGCTAGAAGCC+CGG | 0.532274 | 1.4:-63643961 | None:intergenic |
| AAACCTTTATATGATGGTGT+TGG | 0.534000 | 1.4:+63643655 | MS.gene004960:CDS |
| TCCAGGTAGAAGATGGTCCA+TGG | 0.541180 | 1.4:+63643461 | MS.gene004960:CDS |
| CTATTCCTACTTTCAAACAA+TGG | 0.556799 | 1.4:-63643600 | None:intergenic |
| TATGTGGAACTACCCTTGCC+GGG | 0.557506 | 1.4:+63643943 | MS.gene004960:CDS |
| TGGTATAAATCTTGAAAATG+TGG | 0.560638 | 1.4:-63644342 | None:intergenic |
| TGGAATTTCTTGCAGCATGT+GGG | 0.565529 | 1.4:+63643492 | MS.gene004960:CDS |
| AAAGGTAGAATGGAGAGTCC+AGG | 0.566666 | 1.4:+63643444 | MS.gene004960:CDS |
| AATAATAGAATTAATTCAAG+TGG | 0.567797 | 1.4:+63645535 | MS.gene004960:CDS |
| AAAGGCTAGAAGCCCGGCAA+GGG | 0.569854 | 1.4:-63643955 | None:intergenic |
| CTAGATGGGAGCCTGCTCAT+GGG | 0.572292 | 1.4:+63645006 | MS.gene004960:CDS |
| GTAGTCTTTGAGTACACTGC+GGG | 0.575767 | 1.4:+63643712 | MS.gene004960:CDS |
| AAACTCGCCAACTCTTTGCA+AGG | 0.580589 | 1.4:+63644584 | MS.gene004960:CDS |
| GTTCTAGACCAGCCCAAACA+GGG | 0.583021 | 1.4:-63644532 | None:intergenic |
| GTTGTCACCTACTTTCATAG+AGG | 0.589780 | 1.4:-63645333 | None:intergenic |
| TACTGAAATTGTAGCTCGTG+TGG | 0.591275 | 1.4:+63645577 | MS.gene004960:CDS |
| AGCAGAACCTCTATGAAAGT+AGG | 0.598229 | 1.4:+63645326 | MS.gene004960:CDS |
| CAAAGGCTAGAAGCCCGGCA+AGG | 0.602133 | 1.4:-63643956 | None:intergenic |
| TTGAAACCAAACTGAAAGTG+AGG | 0.606576 | 1.4:-63644406 | None:intergenic |
| TTGCATAAATTCAGAAAACA+AGG | 0.607863 | 1.4:+63645118 | MS.gene004960:CDS |
| AAGAGTTGGCGAGTTTGTCG+AGG | 0.617634 | 1.4:-63644577 | None:intergenic |
| AATCTTCATGATGTCATCTG+AGG | 0.633279 | 1.4:-63645300 | None:intergenic |
| GTACTCAAAGACTACAATCA+CGG | 0.651714 | 1.4:-63643704 | None:intergenic |
| AGCAACCCAATGTACACCAA+AGG | 0.653502 | 1.4:-63643973 | None:intergenic |
| GTGTTGGAAGAAATGCTATG+TGG | 0.665026 | 1.4:+63643671 | MS.gene004960:CDS |
| TGTTGGAAGAAATGCTATGT+GGG | 0.671135 | 1.4:+63643672 | MS.gene004960:CDS |
| AGACCAACAGAATGATGAGG+AGG | 0.675708 | 1.4:+63645709 | MS.gene004960:CDS |
| ACCAGACCAACAGAATGATG+AGG | 0.697039 | 1.4:+63645706 | MS.gene004960:CDS |
| TGTAGTCTTTGAGTACACTG+CGG | 0.756186 | 1.4:+63643711 | MS.gene004960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTAATTACTATTATTTTT+TGG | + | chr1.4:63645181-63645200 | MS.gene004960:intron | 10.0% |
| !!! | TTTTATTTAATAGTTATTTC+TGG | + | chr1.4:63644181-63644200 | MS.gene004960:intron | 10.0% |
| !! | AATAATAGAATTAATTCAAG+TGG | + | chr1.4:63645535-63645554 | MS.gene004960:CDS | 15.0% |
| !! | ACTTGAATTAATTCTATTAT+TGG | - | chr1.4:63645536-63645555 | None:intergenic | 15.0% |
| !! | CTTGAATTAATTCTATTATT+GGG | - | chr1.4:63645535-63645554 | None:intergenic | 15.0% |
| !! | TAGTATATATAAATATCACA+AGG | - | chr1.4:63643878-63643897 | None:intergenic | 15.0% |
| !! | TAGTCATGTTATATAAATTA+GGG | - | chr1.4:63644953-63644972 | None:intergenic | 15.0% |
| !! | TATAATTATTTGTACATATG+TGG | + | chr1.4:63644728-63644747 | MS.gene004960:intron | 15.0% |
| !! | TTAGTCATGTTATATAAATT+AGG | - | chr1.4:63644954-63644973 | None:intergenic | 15.0% |
| !!! | ATTAATATTTTGTTGATTTC+AGG | + | chr1.4:63644974-63644993 | MS.gene004960:intron | 15.0% |
| !!! | ATTAGGGTTAAATATATTTT+TGG | - | chr1.4:63644937-63644956 | None:intergenic | 15.0% |
| !!! | TAAATTAATTTAAGGGTATA+TGG | - | chr1.4:63644894-63644913 | None:intergenic | 15.0% |
| !! | AAGATTTATACCAACTATAA+AGG | + | chr1.4:63644352-63644371 | MS.gene004960:CDS | 20.0% |
| !! | AATTGATGAATTGTTTGATT+TGG | + | chr1.4:63644442-63644461 | MS.gene004960:CDS | 20.0% |
| !! | AGAATTTCCACTATTATAAT+TGG | + | chr1.4:63644473-63644492 | MS.gene004960:CDS | 20.0% |
| !! | ATATGGTAATTAAAATCTCT+TGG | - | chr1.4:63644877-63644896 | None:intergenic | 20.0% |
| !! | CCCTTAAATTAATTTATAAC+CGG | + | chr1.4:63644898-63644917 | MS.gene004960:intron | 20.0% |
| !! | CCGGTTATAAATTAATTTAA+GGG | - | chr1.4:63644901-63644920 | None:intergenic | 20.0% |
| !! | TCCGGTTATAAATTAATTTA+AGG | - | chr1.4:63644902-63644921 | None:intergenic | 20.0% |
| !! | TTTATAACCGGATATTTATA+AGG | + | chr1.4:63644910-63644929 | MS.gene004960:intron | 20.0% |
| !!! | ATTTTTTAAGAAAAGTCTTG+TGG | - | chr1.4:63644622-63644641 | None:intergenic | 20.0% |
| !!! | TATACTATATGTTAATTTGC+AGG | + | chr1.4:63643891-63643910 | MS.gene004960:intron | 20.0% |
| ! | ACACAAAAAAATGCAAAAGA+AGG | + | chr1.4:63645488-63645507 | MS.gene004960:CDS | 25.0% |
| ! | CAAATTTGTGAAAAAAGCTT+GGG | + | chr1.4:63643546-63643565 | MS.gene004960:CDS | 25.0% |
| ! | CAATTCATCAATTCTATAAC+CGG | - | chr1.4:63644435-63644454 | None:intergenic | 25.0% |
| ! | GAGTCTAACAAAAATTTGAT+GGG | + | chr1.4:63644794-63644813 | MS.gene004960:CDS | 25.0% |
| ! | TACCTATATACTTAATCTTG+AGG | + | chr1.4:63645238-63645257 | MS.gene004960:intron | 25.0% |
| ! | TACTTGAAACCTTTATATGA+TGG | + | chr1.4:63643649-63643668 | MS.gene004960:CDS | 25.0% |
| ! | TGAAGTTCCAATTATAATAG+TGG | - | chr1.4:63644483-63644502 | None:intergenic | 25.0% |
| ! | TGAGTCTAACAAAAATTTGA+TGG | + | chr1.4:63644793-63644812 | MS.gene004960:CDS | 25.0% |
| ! | TGGAAGCAATATCTTAAAAT+TGG | + | chr1.4:63645050-63645069 | MS.gene004960:CDS | 25.0% |
| ! | TGGTATAAATCTTGAAAATG+TGG | - | chr1.4:63644345-63644364 | None:intergenic | 25.0% |
| ! | TTGCATAAATTCAGAAAACA+AGG | + | chr1.4:63645118-63645137 | MS.gene004960:CDS | 25.0% |
| !! | AAAAGTGTAAACAGAATATG+TGG | + | chr1.4:63643927-63643946 | MS.gene004960:CDS | 25.0% |
| !! | AAACAATGGATGAATTTTCT+AGG | - | chr1.4:63643589-63643608 | None:intergenic | 25.0% |
| !! | AACAATGGATGAATTTTCTA+GGG | - | chr1.4:63643588-63643607 | None:intergenic | 25.0% |
| !! | TTTTGGTCCTTATAAATATC+CGG | - | chr1.4:63644920-63644939 | None:intergenic | 25.0% |
| !!! | ATTCACATTTTAACGAACTA+TGG | - | chr1.4:63643751-63643770 | None:intergenic | 25.0% |
| !!! | ATTTTAAGATATTGCTTCCA+TGG | - | chr1.4:63645050-63645069 | None:intergenic | 25.0% |
| !!! | TAATAAATTCTGAAGCTCTA+GGG | - | chr1.4:63645453-63645472 | None:intergenic | 25.0% |
| !!! | TTAATAAATTCTGAAGCTCT+AGG | - | chr1.4:63645454-63645473 | None:intergenic | 25.0% |
| !!! | TTTGCATTTTTTTGTGTGTT+TGG | - | chr1.4:63645485-63645504 | None:intergenic | 25.0% |
| !!! | TTTTAAGATATTGCTTCCAT+GGG | - | chr1.4:63645049-63645068 | None:intergenic | 25.0% |
| ATTTATCCTCACTTTCAGTT+TGG | + | chr1.4:63644400-63644419 | MS.gene004960:CDS | 30.0% | |
| CAAAAAAATGCAAAAGAAGG+TGG | + | chr1.4:63645491-63645510 | MS.gene004960:CDS | 30.0% | |
| CTATTCCTACTTTCAAACAA+TGG | - | chr1.4:63643603-63643622 | None:intergenic | 30.0% | |
| GCAAATTTGTGAAAAAAGCT+TGG | + | chr1.4:63643545-63643564 | MS.gene004960:CDS | 30.0% | |
| GGTAATTAAAATCTCTTGGA+AGG | - | chr1.4:63644873-63644892 | None:intergenic | 30.0% | |
| TGACTAATGAAAAGGTAGAA+TGG | + | chr1.4:63643434-63643453 | MS.gene004960:CDS | 30.0% | |
| TGCCTCAAGATTAAGTATAT+AGG | - | chr1.4:63645243-63645262 | None:intergenic | 30.0% | |
| TTCATCCATTGTTTGAAAGT+AGG | + | chr1.4:63643595-63643614 | MS.gene004960:CDS | 30.0% | |
| TTGTCACATTTAGACATTTC+AGG | - | chr1.4:63645653-63645672 | None:intergenic | 30.0% | |
| TTTACCTAGTAGAAAAAGTG+AGG | - | chr1.4:63644039-63644058 | None:intergenic | 30.0% | |
| TTTCACAAATTTGCACAACT+TGG | - | chr1.4:63643539-63643558 | None:intergenic | 30.0% | |
| ! | AAACCTTTATATGATGGTGT+TGG | + | chr1.4:63643655-63643674 | MS.gene004960:CDS | 30.0% |
| ! | TTCAGTTTGGTTTCAATATC+CGG | + | chr1.4:63644413-63644432 | MS.gene004960:CDS | 30.0% |
| !! | TATTTCTGGTATTTACGTGT+CGG | + | chr1.4:63644195-63644214 | MS.gene004960:intron | 30.0% |
| !! | TCAAATTTTAACGTCTGCAA+GGG | - | chr1.4:63643786-63643805 | None:intergenic | 30.0% |
| !!! | ATAAAGGCTCGTTTTGATTA+TGG | + | chr1.4:63644368-63644387 | MS.gene004960:CDS | 30.0% |
| AAAAATCAAGACACTCCAGA+TGG | + | chr1.4:63645733-63645752 | MS.gene004960:CDS | 35.0% | |
| AATCTTCATGATGTCATCTG+AGG | - | chr1.4:63645303-63645322 | None:intergenic | 35.0% | |
| CAAAGCAACAGAAGAATCAT+TGG | + | chr1.4:63644838-63644857 | MS.gene004960:CDS | 35.0% | |
| CTTCCAACACCATCATATAA+AGG | - | chr1.4:63643661-63643680 | None:intergenic | 35.0% | |
| GTACTCAAAGACTACAATCA+CGG | - | chr1.4:63643707-63643726 | None:intergenic | 35.0% | |
| GTTGTCTGTTGAATGTTGTT+TGG | - | chr1.4:63645678-63645697 | None:intergenic | 35.0% | |
| TACACACTAGTTATCGATCT+TGG | + | chr1.4:63644267-63644286 | MS.gene004960:intron | 35.0% | |
| TAGTAAAGCAGGAGATCAAT+GGG | + | chr1.4:63643995-63644014 | MS.gene004960:CDS | 35.0% | |
| TATTTGTACATATGTGGTGC+AGG | + | chr1.4:63644734-63644753 | MS.gene004960:intron | 35.0% | |
| TCAAAACGAGCCTTTATAGT+TGG | - | chr1.4:63644365-63644384 | None:intergenic | 35.0% | |
| TCAGGCTAATTTAGCTAGAT+GGG | + | chr1.4:63644992-63645011 | MS.gene004960:intron | 35.0% | |
| TGTTGGAAGAAATGCTATGT+GGG | + | chr1.4:63643672-63643691 | MS.gene004960:CDS | 35.0% | |
| TTCAGGCTAATTTAGCTAGA+TGG | + | chr1.4:63644991-63645010 | MS.gene004960:intron | 35.0% | |
| TTGAAACCAAACTGAAAGTG+AGG | - | chr1.4:63644409-63644428 | None:intergenic | 35.0% | |
| ! | CAATGATTCTTCTGTTGCTT+TGG | - | chr1.4:63644840-63644859 | None:intergenic | 35.0% |
| ! | TCTTGCATTGATGCTCTTAT+TGG | + | chr1.4:63645095-63645114 | MS.gene004960:CDS | 35.0% |
| !! | CTCAAATTTTAACGTCTGCA+AGG | - | chr1.4:63643787-63643806 | None:intergenic | 35.0% |
| !! | TGGTCTAGAACTCTATGTTT+TGG | + | chr1.4:63644544-63644563 | MS.gene004960:CDS | 35.0% |
| !!! | AGAACTCTATGTTTTGGTCA+CGG | + | chr1.4:63644550-63644569 | MS.gene004960:CDS | 35.0% |
| AACCTAACCTTGCAAAGAGT+TGG | - | chr1.4:63644594-63644613 | None:intergenic | 40.0% | |
| AGCAGAACCTCTATGAAAGT+AGG | + | chr1.4:63645326-63645345 | MS.gene004960:CDS | 40.0% | |
| CAATGGGAACCTGTAATTGT+TGG | + | chr1.4:63644011-63644030 | MS.gene004960:CDS | 40.0% | |
| CTAGTAAAGCAGGAGATCAA+TGG | + | chr1.4:63643994-63644013 | MS.gene004960:CDS | 40.0% | |
| GTGAAAAAAGCTTGGGAGAT+TGG | + | chr1.4:63643553-63643572 | MS.gene004960:CDS | 40.0% | |
| GTGTTGGAAGAAATGCTATG+TGG | + | chr1.4:63643671-63643690 | MS.gene004960:CDS | 40.0% | |
| GTTGTCACCTACTTTCATAG+AGG | - | chr1.4:63645336-63645355 | None:intergenic | 40.0% | |
| TACTGAAATTGTAGCTCGTG+TGG | + | chr1.4:63645577-63645596 | MS.gene004960:CDS | 40.0% | |
| TGGAATTTCTTGCAGCATGT+GGG | + | chr1.4:63643492-63643511 | MS.gene004960:CDS | 40.0% | |
| TGTAGTCTTTGAGTACACTG+CGG | + | chr1.4:63643711-63643730 | MS.gene004960:CDS | 40.0% | |
| ! | GTTTCAATTTTCGTCACCCA+TGG | + | chr1.4:63645030-63645049 | MS.gene004960:CDS | 40.0% |
| ! | TCTAGCCTTTGGTGTACATT+GGG | + | chr1.4:63643968-63643987 | MS.gene004960:CDS | 40.0% |
| ! | TTCTAGCCTTTGGTGTACAT+TGG | + | chr1.4:63643967-63643986 | MS.gene004960:CDS | 40.0% |
| !!! | AACGTCTGCAAGGGTATTTT+AGG | - | chr1.4:63643777-63643796 | None:intergenic | 40.0% |
| !!! | GAACTCTATGTTTTGGTCAC+GGG | + | chr1.4:63644551-63644570 | MS.gene004960:CDS | 40.0% |
| AAACTCGCCAACTCTTTGCA+AGG | + | chr1.4:63644584-63644603 | MS.gene004960:CDS | 45.0% | |
| AAAGGTAGAATGGAGAGTCC+AGG | + | chr1.4:63643444-63643463 | MS.gene004960:CDS | 45.0% | |
| AAATTGAAACGCCCATGAGC+AGG | - | chr1.4:63645020-63645039 | None:intergenic | 45.0% | |
| ACCAGACCAACAGAATGATG+AGG | + | chr1.4:63645706-63645725 | MS.gene004960:CDS | 45.0% | |
| AGACCAACAGAATGATGAGG+AGG | + | chr1.4:63645709-63645728 | MS.gene004960:CDS | 45.0% | |
| AGCAACCCAATGTACACCAA+AGG | - | chr1.4:63643976-63643995 | None:intergenic | 45.0% | |
| AGTGAGGCTCCAACAATTAC+AGG | - | chr1.4:63644023-63644042 | None:intergenic | 45.0% | |
| ATATGTGGAACTACCCTTGC+CGG | + | chr1.4:63643942-63643961 | MS.gene004960:CDS | 45.0% | |
| CTGGAATTTCTTGCAGCATG+TGG | + | chr1.4:63643491-63643510 | MS.gene004960:CDS | 45.0% | |
| GAAATTCCAGCTCTCTTCCA+TGG | - | chr1.4:63643481-63643500 | None:intergenic | 45.0% | |
| GTAGTCTTTGAGTACACTGC+GGG | + | chr1.4:63643712-63643731 | MS.gene004960:CDS | 45.0% | |
| TCCTCATCATTCTGTTGGTC+TGG | - | chr1.4:63645710-63645729 | None:intergenic | 45.0% | |
| TTGCCTCCTCATCATTCTGT+TGG | - | chr1.4:63645715-63645734 | None:intergenic | 45.0% | |
| ! | CATTGGGTTGCTAGTAAAGC+AGG | + | chr1.4:63643984-63644003 | MS.gene004960:CDS | 45.0% |
| ! | GTTAGACTCACTTGCTGCTT+GGG | - | chr1.4:63644783-63644802 | None:intergenic | 45.0% |
| ! | TGTTAGACTCACTTGCTGCT+TGG | - | chr1.4:63644784-63644803 | None:intergenic | 45.0% |
| !! | GTATTTACGTGTCGGTGTCA+TGG | + | chr1.4:63644203-63644222 | MS.gene004960:intron | 45.0% |
| !!! | GGAGCCTCACTTTTTCTACT+AGG | + | chr1.4:63644032-63644051 | MS.gene004960:CDS | 45.0% |
| !! | TATAGATAATTAATTAATTA+AGG | - | chr1.4:63645157-63645176 | None:intergenic | 5.0% |
| !! | TGTAAAATTAATAAATTATT+AGG | - | chr1.4:63645208-63645227 | None:intergenic | 5.0% |
| AAGAGTTGGCGAGTTTGTCG+AGG | - | chr1.4:63644580-63644599 | None:intergenic | 50.0% | |
| CATGACTGTTCGCCCTGTTT+GGG | + | chr1.4:63644520-63644539 | MS.gene004960:CDS | 50.0% | |
| CGCCAACTCTTTGCAAGGTT+AGG | + | chr1.4:63644589-63644608 | MS.gene004960:intron | 50.0% | |
| TACACCAAAGGCTAGAAGCC+CGG | - | chr1.4:63643964-63643983 | None:intergenic | 50.0% | |
| TATGTGGAACTACCCTTGCC+GGG | + | chr1.4:63643943-63643962 | MS.gene004960:CDS | 50.0% | |
| TCCAGGTAGAAGATGGTCCA+TGG | + | chr1.4:63643461-63643480 | MS.gene004960:CDS | 50.0% | |
| TCCATGGACCATCTTCTACC+TGG | - | chr1.4:63643465-63643484 | None:intergenic | 50.0% | |
| TGGAGAGTCCAGGTAGAAGA+TGG | + | chr1.4:63643454-63643473 | MS.gene004960:CDS | 50.0% | |
| ! | GTTCTAGACCAGCCCAAACA+GGG | - | chr1.4:63644535-63644554 | None:intergenic | 50.0% |
| !! | AGTTCTAGACCAGCCCAAAC+AGG | - | chr1.4:63644536-63644555 | None:intergenic | 50.0% |
| !! | TTACGTGTCGGTGTCATGGT+TGG | + | chr1.4:63644207-63644226 | MS.gene004960:intron | 50.0% |
| AAAGGCTAGAAGCCCGGCAA+GGG | - | chr1.4:63643958-63643977 | None:intergenic | 55.0% | |
| CTAGATGGGAGCCTGCTCAT+GGG | + | chr1.4:63645006-63645025 | MS.gene004960:CDS | 55.0% | |
| GATGGTCCATGGAAGAGAGC+TGG | + | chr1.4:63643472-63643491 | MS.gene004960:CDS | 55.0% | |
| GCATGACTGTTCGCCCTGTT+TGG | + | chr1.4:63644519-63644538 | MS.gene004960:CDS | 55.0% | |
| ACTGTTCGCCCTGTTTGGGC+TGG | + | chr1.4:63644524-63644543 | MS.gene004960:CDS | 60.0% | |
| CAAAGGCTAGAAGCCCGGCA+AGG | - | chr1.4:63643959-63643978 | None:intergenic | 60.0% | |
| GCTAGATGGGAGCCTGCTCA+TGG | + | chr1.4:63645005-63645024 | MS.gene004960:CDS | 60.0% | |
| ! | CTTGCCGGGCTTCTAGCCTT+TGG | + | chr1.4:63643957-63643976 | MS.gene004960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 63643433 | 63645760 | 63643433 | ID=MS.gene004960 |
| chr1.4 | mRNA | 63643433 | 63645760 | 63643433 | ID=MS.gene004960.t1;Parent=MS.gene004960 |
| chr1.4 | exon | 63643433 | 63643733 | 63643433 | ID=MS.gene004960.t1.exon1;Parent=MS.gene004960.t1 |
| chr1.4 | CDS | 63643433 | 63643733 | 63643433 | ID=cds.MS.gene004960.t1;Parent=MS.gene004960.t1 |
| chr1.4 | exon | 63643913 | 63644053 | 63643913 | ID=MS.gene004960.t1.exon2;Parent=MS.gene004960.t1 |
| chr1.4 | CDS | 63643913 | 63644053 | 63643913 | ID=cds.MS.gene004960.t1;Parent=MS.gene004960.t1 |
| chr1.4 | exon | 63644333 | 63644605 | 63644333 | ID=MS.gene004960.t1.exon3;Parent=MS.gene004960.t1 |
| chr1.4 | CDS | 63644333 | 63644605 | 63644333 | ID=cds.MS.gene004960.t1;Parent=MS.gene004960.t1 |
| chr1.4 | exon | 63644756 | 63644859 | 63644756 | ID=MS.gene004960.t1.exon4;Parent=MS.gene004960.t1 |
| chr1.4 | CDS | 63644756 | 63644859 | 63644756 | ID=cds.MS.gene004960.t1;Parent=MS.gene004960.t1 |
| chr1.4 | exon | 63644996 | 63645139 | 63644996 | ID=MS.gene004960.t1.exon5;Parent=MS.gene004960.t1 |
| chr1.4 | CDS | 63644996 | 63645139 | 63644996 | ID=cds.MS.gene004960.t1;Parent=MS.gene004960.t1 |
| chr1.4 | exon | 63645299 | 63645760 | 63645299 | ID=MS.gene004960.t1.exon6;Parent=MS.gene004960.t1 |
| chr1.4 | CDS | 63645299 | 63645760 | 63645299 | ID=cds.MS.gene004960.t1;Parent=MS.gene004960.t1 |
| Gene Sequence |
| Protein sequence |
