Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96117.t1 | XP_013455742.1 | 97.7 | 391 | 9 | 0 | 1 | 391 | 81 | 471 | 5.50E-208 | 733.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96117.t1 | Q9SJE8 | 53.2 | 385 | 173 | 2 | 1 | 382 | 53 | 433 | 2.7e-107 | 390.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96117.t1 | A0A072UL02 | 97.7 | 391 | 9 | 0 | 1 | 391 | 81 | 471 | 3.9e-208 | 733.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07488 | MS.gene96117 | PPI |
| MS.gene004961 | MS.gene96117 | PPI |
| MS.gene96117 | MS.gene044738 | PPI |
| MS.gene062179 | MS.gene96117 | PPI |
| MS.gene96117 | MS.gene61659 | PPI |
| MS.gene062180 | MS.gene96117 | PPI |
| MS.gene004960 | MS.gene96117 | PPI |
| MS.gene96117 | MS.gene07489 | PPI |
| MS.gene96117 | MS.gene66665 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96117.t1 | MTR_4g051575 | 97.698 | 391 | 9 | 0 | 1 | 391 | 81 | 471 | 0.0 | 788 |
| MS.gene96117.t1 | MTR_4g051575 | 96.418 | 335 | 11 | 1 | 57 | 391 | 4 | 337 | 0.0 | 663 |
| MS.gene96117.t1 | MTR_2g087288 | 50.000 | 382 | 181 | 4 | 1 | 379 | 77 | 451 | 3.92e-132 | 386 |
| MS.gene96117.t1 | MTR_7g106260 | 50.891 | 393 | 184 | 4 | 1 | 390 | 82 | 468 | 5.05e-131 | 385 |
| MS.gene96117.t1 | MTR_2g087285 | 52.035 | 344 | 163 | 2 | 1 | 343 | 77 | 419 | 9.67e-124 | 365 |
| MS.gene96117.t1 | MTR_1g077670 | 42.287 | 376 | 198 | 4 | 1 | 359 | 92 | 465 | 8.06e-97 | 297 |
| MS.gene96117.t1 | MTR_1g077660 | 44.602 | 352 | 174 | 4 | 1 | 334 | 86 | 434 | 1.63e-95 | 293 |
| MS.gene96117.t1 | MTR_5g014310 | 42.904 | 303 | 168 | 3 | 1 | 299 | 97 | 398 | 1.63e-73 | 239 |
| MS.gene96117.t1 | MTR_7g094770 | 36.599 | 347 | 213 | 3 | 1 | 343 | 96 | 439 | 5.26e-73 | 234 |
| MS.gene96117.t1 | MTR_4g098570 | 43.046 | 302 | 168 | 2 | 1 | 299 | 89 | 389 | 1.28e-72 | 236 |
| MS.gene96117.t1 | MTR_1g115140 | 42.857 | 301 | 161 | 2 | 1 | 298 | 81 | 373 | 1.92e-72 | 236 |
| MS.gene96117.t1 | MTR_1g115175 | 41.528 | 301 | 173 | 2 | 1 | 299 | 77 | 376 | 2.55e-70 | 230 |
| MS.gene96117.t1 | MTR_4g098610 | 41.722 | 302 | 172 | 2 | 1 | 299 | 89 | 389 | 5.21e-70 | 229 |
| MS.gene96117.t1 | MTR_1g115190 | 39.519 | 291 | 172 | 2 | 12 | 299 | 89 | 378 | 9.12e-65 | 216 |
| MS.gene96117.t1 | MTR_6g084680 | 32.982 | 285 | 180 | 4 | 1 | 275 | 124 | 407 | 1.54e-51 | 182 |
| MS.gene96117.t1 | MTR_1g111250 | 33.217 | 286 | 181 | 3 | 1 | 277 | 112 | 396 | 1.90e-50 | 178 |
| MS.gene96117.t1 | MTR_8g104110 | 32.632 | 285 | 180 | 4 | 1 | 275 | 105 | 387 | 2.11e-50 | 178 |
| MS.gene96117.t1 | MTR_8g104130 | 34.058 | 276 | 176 | 4 | 1 | 275 | 100 | 370 | 6.15e-50 | 177 |
| MS.gene96117.t1 | MTR_8g104120 | 32.632 | 285 | 180 | 4 | 1 | 275 | 99 | 381 | 3.53e-48 | 172 |
| MS.gene96117.t1 | MTR_0710s0020 | 47.368 | 95 | 50 | 0 | 12 | 106 | 89 | 183 | 3.94e-22 | 93.2 |
| MS.gene96117.t1 | MTR_6g015325 | 38.095 | 84 | 50 | 2 | 16 | 99 | 7 | 88 | 8.60e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96117.t1 | AT2G27240 | 53.453 | 391 | 173 | 3 | 1 | 386 | 53 | 439 | 1.02e-145 | 422 |
| MS.gene96117.t1 | AT1G08440 | 57.602 | 342 | 142 | 1 | 1 | 339 | 53 | 394 | 1.32e-144 | 420 |
| MS.gene96117.t1 | AT2G27240 | 50.360 | 417 | 172 | 5 | 1 | 386 | 53 | 465 | 6.00e-140 | 408 |
| MS.gene96117.t1 | AT1G08430 | 49.746 | 394 | 194 | 2 | 1 | 391 | 56 | 448 | 5.57e-138 | 403 |
| MS.gene96117.t1 | AT3G11680 | 50.382 | 393 | 181 | 7 | 1 | 382 | 78 | 467 | 1.09e-121 | 361 |
| MS.gene96117.t1 | AT3G11680 | 50.382 | 393 | 181 | 7 | 1 | 382 | 76 | 465 | 1.24e-121 | 361 |
| MS.gene96117.t1 | AT4G00910 | 39.119 | 386 | 208 | 3 | 1 | 360 | 98 | 482 | 2.42e-93 | 288 |
| MS.gene96117.t1 | AT4G17970 | 42.475 | 299 | 171 | 1 | 1 | 299 | 79 | 376 | 4.16e-75 | 243 |
| MS.gene96117.t1 | AT5G46600 | 40.984 | 305 | 173 | 2 | 1 | 299 | 82 | 385 | 5.25e-72 | 234 |
| MS.gene96117.t1 | AT5G46610 | 41.060 | 302 | 174 | 2 | 1 | 299 | 81 | 381 | 5.76e-72 | 234 |
| MS.gene96117.t1 | AT5G46610 | 36.755 | 302 | 163 | 3 | 1 | 299 | 81 | 357 | 1.33e-58 | 199 |
| MS.gene96117.t1 | AT3G18440 | 34.155 | 284 | 176 | 4 | 1 | 275 | 119 | 400 | 8.29e-54 | 188 |
| MS.gene96117.t1 | AT2G17470 | 34.043 | 282 | 175 | 4 | 1 | 273 | 71 | 350 | 2.54e-52 | 182 |
| MS.gene96117.t1 | AT1G68600 | 33.916 | 286 | 178 | 4 | 1 | 277 | 88 | 371 | 5.26e-52 | 182 |
| MS.gene96117.t1 | AT2G17470 | 34.043 | 282 | 175 | 4 | 1 | 273 | 93 | 372 | 5.65e-52 | 182 |
| MS.gene96117.t1 | AT5G46610 | 34.106 | 302 | 148 | 3 | 1 | 299 | 81 | 334 | 3.40e-51 | 179 |
| MS.gene96117.t1 | AT1G25480 | 32.686 | 309 | 196 | 5 | 1 | 300 | 99 | 404 | 7.19e-51 | 179 |
| MS.gene96117.t1 | AT1G18420 | 30.492 | 305 | 200 | 4 | 1 | 295 | 40 | 342 | 9.58e-51 | 177 |
| MS.gene96117.t1 | AT1G18420 | 30.492 | 305 | 200 | 4 | 1 | 295 | 123 | 425 | 6.32e-50 | 177 |
Find 51 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGCTTCAATCAAGTTTA+TGG | 0.032989 | 4.2:-50730374 | MS.gene96117:CDS |
| CATTACTTGGCTAGCTTATC+TGG | 0.169349 | 4.2:-50732111 | MS.gene96117:CDS |
| GCGTTCGCAACGTGAGTTTC+TGG | 0.192829 | 4.2:+50730423 | None:intergenic |
| TGGTTCCCATCTTGCAAAAT+TGG | 0.218158 | 4.2:+50731008 | None:intergenic |
| TGGAATCAATACCTTAAAAT+TGG | 0.229282 | 4.2:-50730955 | MS.gene96117:CDS |
| ACATTTCTGTGCATAGTTCT+TGG | 0.240949 | 4.2:+50730514 | None:intergenic |
| CAGCTGGTGCTTTAGGTGTT+GGG | 0.251786 | 4.2:-50732137 | MS.gene96117:CDS |
| TTCTCTTTAATATCTGTATC+TGG | 0.259432 | 4.2:-50731850 | MS.gene96117:CDS |
| GTGAAATCAAGATATGATTA+TGG | 0.273521 | 4.2:-50731895 | MS.gene96117:CDS |
| ACAGGGGAACCAATTCTAAT+TGG | 0.279623 | 4.2:-50732084 | MS.gene96117:CDS |
| TCATATCTTGATTTCACTTT+GGG | 0.284806 | 4.2:+50731901 | None:intergenic |
| ACATTGGCAGCTGGTGCTTT+AGG | 0.286618 | 4.2:-50732144 | MS.gene96117:CDS |
| GGAGATTGTGACACTTCTTT+AGG | 0.293984 | 4.2:+50730201 | None:intergenic |
| ACATGTGAATTCTCAATCTT+AGG | 0.327576 | 4.2:+50730153 | None:intergenic |
| ATACTTGGTAACTTCTTAGA+AGG | 0.349508 | 4.2:-50731679 | MS.gene96117:intron |
| AGGTGTTGGGGCTCATTACT+TGG | 0.372554 | 4.2:-50732124 | MS.gene96117:CDS |
| ACAAAGAATCCAATTAGAAT+TGG | 0.373993 | 4.2:+50732075 | None:intergenic |
| CTTTAGGAAAAGGTTTGAAT+AGG | 0.382546 | 4.2:-50732176 | MS.gene96117:CDS |
| TTGATTGAAGCAACGAGTTA+AGG | 0.386024 | 4.2:+50730382 | None:intergenic |
| GCAGCTGGTGCTTTAGGTGT+TGG | 0.391069 | 4.2:-50732138 | MS.gene96117:CDS |
| ATCATATCTTGATTTCACTT+TGG | 0.405404 | 4.2:+50731900 | None:intergenic |
| TGAAATCAAGATATGATTAT+GGG | 0.418681 | 4.2:-50731894 | MS.gene96117:CDS |
| TTAGGAGCTACTTTAGGAAA+AGG | 0.426037 | 4.2:-50732186 | MS.gene96117:intron |
| AGTTCAAATTTCGTCACCCT+TGG | 0.430578 | 4.2:-50730975 | MS.gene96117:CDS |
| GCTAGCTTATCTGGAGAGAC+AGG | 0.435266 | 4.2:-50732102 | MS.gene96117:CDS |
| GAATTCTCAATCTTAGGATC+TGG | 0.446590 | 4.2:+50730159 | None:intergenic |
| GCTATCAAGTTGGAAATACT+TGG | 0.456453 | 4.2:-50731694 | MS.gene96117:CDS |
| AGCTGGTGCTTTAGGTGTTG+GGG | 0.466373 | 4.2:-50732136 | MS.gene96117:CDS |
| AACTCTTCACCAGCCCAAAC+AGG | 0.473547 | 4.2:+50731730 | None:intergenic |
| TGATGATGAAGTATTACAAA+TGG | 0.486318 | 4.2:-50731821 | MS.gene96117:CDS |
| TTTGTTTGTCCTGTTTGGGC+TGG | 0.492028 | 4.2:-50731739 | MS.gene96117:CDS |
| ATATCGAATGGAAGCTCTAA+AGG | 0.501202 | 4.2:-50730911 | MS.gene96117:CDS |
| GGCAGTGATGACTGTGGTGG+TGG | 0.502115 | 4.2:-50732875 | MS.gene96117:CDS |
| GGATTCTTTGTATTTCTACA+AGG | 0.514172 | 4.2:-50732063 | MS.gene96117:intron |
| TGATTCAATTGCTATCAAGT+TGG | 0.515098 | 4.2:-50731704 | MS.gene96117:CDS |
| TAAAAGCAATGATGAGTCAC+TGG | 0.520604 | 4.2:-50731129 | MS.gene96117:intron |
| GGTTCAGCACATTCACAAGT+TGG | 0.522133 | 4.2:+50730180 | None:intergenic |
| AATTTGAACTTGCCATGACC+TGG | 0.528501 | 4.2:+50730988 | None:intergenic |
| AATGAAGCAACTGTCGCAGC+TGG | 0.530869 | 4.2:+50730324 | None:intergenic |
| GAATAGGACAATGGCAACAT+TGG | 0.531378 | 4.2:-50732160 | MS.gene96117:CDS |
| GCAAGATGGGAACCAGGTCA+TGG | 0.553785 | 4.2:-50731000 | MS.gene96117:CDS |
| TCGTCAATGTGCATATCGAA+TGG | 0.577376 | 4.2:-50730923 | MS.gene96117:CDS |
| ACAATGGCAACATTGGCAGC+TGG | 0.586205 | 4.2:-50732153 | MS.gene96117:CDS |
| CTAGCTTATCTGGAGAGACA+GGG | 0.601883 | 4.2:-50732101 | MS.gene96117:CDS |
| AAAAGGTTTGAATAGGACAA+TGG | 0.617027 | 4.2:-50732169 | MS.gene96117:CDS |
| AATGTGTTTAGAATCAAGCA+TGG | 0.622652 | 4.2:-50730496 | MS.gene96117:CDS |
| TGAGTACTTCAAAACAACAA+AGG | 0.649926 | 4.2:-50731210 | MS.gene96117:CDS |
| TAGCTTATCTGGAGAGACAG+GGG | 0.659742 | 4.2:-50732100 | MS.gene96117:CDS |
| GTGGGCAGTGATGACTGTGG+TGG | 0.678035 | 4.2:-50732878 | MS.gene96117:CDS |
| TGATATTGTTGATTGCACTG+AGG | 0.767820 | 4.2:-50730295 | MS.gene96117:CDS |
| AATGTGGGCAGTGATGACTG+TGG | 0.817988 | 4.2:-50732881 | MS.gene96117:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATAAATATTTTTTA+TGG | + | chr4.2:50730351-50730370 | None:intergenic | 0.0% |
| !!! | ATATGTGAAAATTTTATTTA+TGG | - | chr4.2:50731914-50731933 | MS.gene96117:CDS | 10.0% |
| !!! | CTTTATTATTACATTTTTTT+TGG | + | chr4.2:50730965-50730984 | None:intergenic | 10.0% |
| !!! | TATAAAAAGTATATTTCATT+TGG | - | chr4.2:50730371-50730390 | MS.gene96117:CDS | 10.0% |
| !!! | TTTTATCTTTACTTTATTAT+AGG | - | chr4.2:50731953-50731972 | MS.gene96117:intron | 10.0% |
| !!! | TTTTTATATCATTATCTATT+AGG | + | chr4.2:50730453-50730472 | None:intergenic | 10.0% |
| !! | TAAATAAGGATATATAATAG+TGG | + | chr4.2:50731518-50731537 | None:intergenic | 15.0% |
| !! | TAGATGAAATTCAATAAATA+AGG | + | chr4.2:50731532-50731551 | None:intergenic | 15.0% |
| !! | TTCAAAATAATTATCGTTTA+AGG | + | chr4.2:50731663-50731682 | None:intergenic | 15.0% |
| !!! | AAATGCATATTTTAGATTTA+TGG | + | chr4.2:50732136-50732155 | None:intergenic | 15.0% |
| !!! | ATTTTTTATGGAATACAAAA+GGG | + | chr4.2:50730339-50730358 | None:intergenic | 15.0% |
| !!! | TACGATTAATAAAAGTATTT+TGG | - | chr4.2:50731571-50731590 | MS.gene96117:intron | 15.0% |
| !!! | TATTTTTTATGGAATACAAA+AGG | + | chr4.2:50730340-50730359 | None:intergenic | 15.0% |
| !!! | TTGTTTATAGACATAATTTT+TGG | + | chr4.2:50731386-50731405 | None:intergenic | 15.0% |
| !! | AAAAGATTAAAAGAGAACTA+AGG | - | chr4.2:50730469-50730488 | MS.gene96117:CDS | 20.0% |
| !! | CGAAGATCTAAATTTAATTA+GGG | + | chr4.2:50732349-50732368 | None:intergenic | 20.0% |
| !! | TGAAATCAAGATATGATTAT+GGG | - | chr4.2:50731090-50731109 | MS.gene96117:intron | 20.0% |
| !! | TTATTGTTGTATCTTATGTA+GGG | - | chr4.2:50732423-50732442 | MS.gene96117:intron | 20.0% |
| !! | TTGTAATATTGTGTAGAATA+TGG | + | chr4.2:50730184-50730203 | None:intergenic | 20.0% |
| !! | TTTATTGTTGTATCTTATGT+AGG | - | chr4.2:50732422-50732441 | MS.gene96117:intron | 20.0% |
| !!! | AAACGATAATTATTTTGAAG+TGG | - | chr4.2:50731664-50731683 | MS.gene96117:intron | 20.0% |
| !!! | GTATAATATGTCACATTTTT+AGG | - | chr4.2:50730780-50730799 | MS.gene96117:intron | 20.0% |
| !!! | TAGATTTTTGATCATTTCAA+TGG | - | chr4.2:50730399-50730418 | MS.gene96117:CDS | 20.0% |
| !!! | TTCTTTTCAAAATCAAACTA+AGG | - | chr4.2:50730234-50730253 | MS.gene96117:CDS | 20.0% |
| !!! | TTTTAGTATAATTGAGATCA+TGG | + | chr4.2:50732220-50732239 | None:intergenic | 20.0% |
| ! | AAAAACCAATTTATCCATTC+AGG | - | chr4.2:50730697-50730716 | MS.gene96117:intron | 25.0% |
| ! | ACAAAGAATCCAATTAGAAT+TGG | + | chr4.2:50730912-50730931 | None:intergenic | 25.0% |
| ! | ACGCATAAAAAATGCTTAAA+AGG | + | chr4.2:50731444-50731463 | None:intergenic | 25.0% |
| ! | ATCATATCTTGATTTCACTT+TGG | + | chr4.2:50731087-50731106 | None:intergenic | 25.0% |
| ! | ATGGTATATGATGTATACTT+TGG | + | chr4.2:50732117-50732136 | None:intergenic | 25.0% |
| ! | GATAAAAAGTCATTTCTTGA+AGG | - | chr4.2:50731811-50731830 | MS.gene96117:CDS | 25.0% |
| ! | GCGAAGATCTAAATTTAATT+AGG | + | chr4.2:50732350-50732369 | None:intergenic | 25.0% |
| ! | GTGAAATCAAGATATGATTA+TGG | - | chr4.2:50731089-50731108 | MS.gene96117:intron | 25.0% |
| ! | TCATATCTTGATTTCACTTT+GGG | + | chr4.2:50731086-50731105 | None:intergenic | 25.0% |
| ! | TGGAATCAATACCTTAAAAT+TGG | - | chr4.2:50732029-50732048 | MS.gene96117:intron | 25.0% |
| ! | TTCTCTTTAATATCTGTATC+TGG | - | chr4.2:50731134-50731153 | MS.gene96117:CDS | 25.0% |
| !! | CTCGTTTAGTAGAAATATTT+TGG | - | chr4.2:50730588-50730607 | MS.gene96117:intron | 25.0% |
| !! | CTTTTATTAATCGTAGTTAG+TGG | + | chr4.2:50731566-50731585 | None:intergenic | 25.0% |
| !! | TGATGATGAAGTATTACAAA+TGG | - | chr4.2:50731163-50731182 | MS.gene96117:CDS | 25.0% |
| !!! | AAAAGGCAATTATTTTGAGA+GGG | + | chr4.2:50731427-50731446 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGTATTGATTCCA+AGG | + | chr4.2:50732029-50732048 | None:intergenic | 25.0% |
| !!! | TAAAAGGCAATTATTTTGAG+AGG | + | chr4.2:50731428-50731447 | None:intergenic | 25.0% |
| !!! | TTTTAAGGTATTGATTCCAA+GGG | + | chr4.2:50732028-50732047 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGCAGCATTTGT+AGG | - | chr4.2:50731751-50731770 | MS.gene96117:CDS | 25.0% |
| AAAAGGTTTGAATAGGACAA+TGG | - | chr4.2:50730815-50730834 | MS.gene96117:intron | 30.0% | |
| AATCAAACTAAGGCATATCT+CGG | - | chr4.2:50730244-50730263 | MS.gene96117:CDS | 30.0% | |
| ACATGTGAATTCTCAATCTT+AGG | + | chr4.2:50732834-50732853 | None:intergenic | 30.0% | |
| TGAGTACTTCAAAACAACAA+AGG | - | chr4.2:50731774-50731793 | MS.gene96117:CDS | 30.0% | |
| TGATTCAATTGCTATCAAGT+TGG | - | chr4.2:50731280-50731299 | MS.gene96117:intron | 30.0% | |
| TTAATCTTAGACTATGTGTC+TGG | + | chr4.2:50732325-50732344 | None:intergenic | 30.0% | |
| ! | AATGTGTTTAGAATCAAGCA+TGG | - | chr4.2:50732488-50732507 | MS.gene96117:intron | 30.0% |
| ! | ATACTTGGTAACTTCTTAGA+AGG | - | chr4.2:50731305-50731324 | MS.gene96117:intron | 30.0% |
| ! | CTGCTATAGCATCTTTTATA+AGG | - | chr4.2:50731054-50731073 | MS.gene96117:intron | 30.0% |
| ! | CTTTAGGAAAAGGTTTGAAT+AGG | - | chr4.2:50730808-50730827 | MS.gene96117:intron | 30.0% |
| ! | GGATTCTTTGTATTTCTACA+AGG | - | chr4.2:50730921-50730940 | MS.gene96117:CDS | 30.0% |
| !! | ACATTTTTAGGAGCTACTTT+AGG | - | chr4.2:50730792-50730811 | MS.gene96117:intron | 30.0% |
| !! | AGATTATCCACCATTTTTCT+TGG | - | chr4.2:50731194-50731213 | MS.gene96117:CDS | 30.0% |
| !! | CATTTTTGTTTGTCCTGTTT+GGG | - | chr4.2:50731241-50731260 | MS.gene96117:intron | 30.0% |
| !! | TGTCTGGTTTGGATTATTTA+TGG | + | chr4.2:50732309-50732328 | None:intergenic | 30.0% |
| ACATTTCTGTGCATAGTTCT+TGG | + | chr4.2:50732473-50732492 | None:intergenic | 35.0% | |
| AGCATCCTGAATGGATAAAT+TGG | + | chr4.2:50730705-50730724 | None:intergenic | 35.0% | |
| ATAATTTCCTTGCATTCACG+TGG | + | chr4.2:50732284-50732303 | None:intergenic | 35.0% | |
| CCAAACAGGACAAACAAAAA+TGG | + | chr4.2:50731243-50731262 | None:intergenic | 35.0% | |
| CGTTGCTTCAATCAAGTTTA+TGG | - | chr4.2:50732610-50732629 | MS.gene96117:intron | 35.0% | |
| GAATTCTCAATCTTAGGATC+TGG | + | chr4.2:50732828-50732847 | None:intergenic | 35.0% | |
| TAAAAGCAATGATGAGTCAC+TGG | - | chr4.2:50731855-50731874 | MS.gene96117:CDS | 35.0% | |
| TTGATTGAAGCAACGAGTTA+AGG | + | chr4.2:50732605-50732624 | None:intergenic | 35.0% | |
| ! | ATAGGCCAATTTTGCAAGAT+GGG | - | chr4.2:50731971-50731990 | MS.gene96117:intron | 35.0% |
| ! | ATATCGAATGGAAGCTCTAA+AGG | - | chr4.2:50732073-50732092 | MS.gene96117:CDS | 35.0% |
| ! | GGAATAGTCTTAGTTTCGTA+AGG | - | chr4.2:50730420-50730439 | MS.gene96117:CDS | 35.0% |
| ! | TATAGGCCAATTTTGCAAGA+TGG | - | chr4.2:50731970-50731989 | MS.gene96117:intron | 35.0% |
| ! | TGATATTGTTGATTGCACTG+AGG | - | chr4.2:50732689-50732708 | MS.gene96117:intron | 35.0% |
| ! | TTAGGAGCTACTTTAGGAAA+AGG | - | chr4.2:50730798-50730817 | MS.gene96117:intron | 35.0% |
| !! | ATTACTAAGAGCATCCTGAA+TGG | + | chr4.2:50730714-50730733 | None:intergenic | 35.0% |
| !! | CCATTTTTGTTTGTCCTGTT+TGG | - | chr4.2:50731240-50731259 | MS.gene96117:intron | 35.0% |
| !! | GAGAAAGTGCACCAATTTTA+AGG | + | chr4.2:50732043-50732062 | None:intergenic | 35.0% |
| !! | GCTATCAAGTTGGAAATACT+TGG | - | chr4.2:50731290-50731309 | MS.gene96117:intron | 35.0% |
| !! | TCTAGTCAATCTTTAAAGCC+TGG | - | chr4.2:50732162-50732181 | MS.gene96117:CDS | 35.0% |
| !! | TTATCCACCATTTTTCTTGG+AGG | - | chr4.2:50731197-50731216 | MS.gene96117:CDS | 35.0% |
| AAAGGGCAGCTTAGTGTAAT+AGG | + | chr4.2:50730322-50730341 | None:intergenic | 40.0% | |
| AATTTGAACTTGCCATGACC+TGG | + | chr4.2:50731999-50732018 | None:intergenic | 40.0% | |
| ACAGGGGAACCAATTCTAAT+TGG | - | chr4.2:50730900-50730919 | MS.gene96117:CDS | 40.0% | |
| AGAACCTCCAAGAAAAATGG+TGG | + | chr4.2:50731204-50731223 | None:intergenic | 40.0% | |
| AGCAGAACCTCCAAGAAAAA+TGG | + | chr4.2:50731207-50731226 | None:intergenic | 40.0% | |
| AGTCTTAGTTTCGTAAGGCA+TGG | - | chr4.2:50730425-50730444 | MS.gene96117:CDS | 40.0% | |
| AGTTCAAATTTCGTCACCCT+TGG | - | chr4.2:50732009-50732028 | MS.gene96117:intron | 40.0% | |
| CTTAGACTATGTGTCTGGTT+TGG | + | chr4.2:50732320-50732339 | None:intergenic | 40.0% | |
| GAATAGGACAATGGCAACAT+TGG | - | chr4.2:50730824-50730843 | MS.gene96117:intron | 40.0% | |
| GGAGATTGTGACACTTCTTT+AGG | + | chr4.2:50732786-50732805 | None:intergenic | 40.0% | |
| TCGTCAATGTGCATATCGAA+TGG | - | chr4.2:50732061-50732080 | MS.gene96117:intron | 40.0% | |
| TGGTTCCCATCTTGCAAAAT+TGG | + | chr4.2:50731979-50731998 | None:intergenic | 40.0% | |
| ! | AATTTTGCAAGATGGGAACC+AGG | - | chr4.2:50731978-50731997 | MS.gene96117:intron | 40.0% |
| !! | CATTACTTGGCTAGCTTATC+TGG | - | chr4.2:50730873-50730892 | MS.gene96117:intron | 40.0% |
| !!! | GTGGTTTTTGAGTACACAGT+TGG | - | chr4.2:50730128-50730147 | MS.gene96117:CDS | 40.0% |
| AAGCAATGATGAGTCACTGG+TGG | - | chr4.2:50731858-50731877 | MS.gene96117:CDS | 45.0% | |
| AGCAATGATGAGTCACTGGT+GGG | - | chr4.2:50731859-50731878 | MS.gene96117:CDS | 45.0% | |
| CTACTTACCACGTGAATGCA+AGG | - | chr4.2:50732274-50732293 | MS.gene96117:intron | 45.0% | |
| CTAGCTTATCTGGAGAGACA+GGG | - | chr4.2:50730883-50730902 | MS.gene96117:intron | 45.0% | |
| GGTAAGTAGCTCAGAGTCAT+TGG | + | chr4.2:50732263-50732282 | None:intergenic | 45.0% | |
| GGTTCAGCACATTCACAAGT+TGG | + | chr4.2:50732807-50732826 | None:intergenic | 45.0% | |
| TAGCTTATCTGGAGAGACAG+GGG | - | chr4.2:50730884-50730903 | MS.gene96117:intron | 45.0% | |
| TAGTGTAATAGGCTTCCACC+AGG | + | chr4.2:50730311-50730330 | None:intergenic | 45.0% | |
| TCTAATGACTCTGAGCTACC+AGG | + | chr4.2:50732183-50732202 | None:intergenic | 45.0% | |
| TTTGTTTGTCCTGTTTGGGC+TGG | - | chr4.2:50731245-50731264 | MS.gene96117:intron | 45.0% | |
| ! | AAGGCATATCTCGGTGCAAA+CGG | - | chr4.2:50730253-50730272 | MS.gene96117:CDS | 45.0% |
| !! | AAAAATAATAAATGTTATAT+TGG | + | chr4.2:50731493-50731512 | None:intergenic | 5.0% |
| AACTCTTCACCAGCCCAAAC+AGG | + | chr4.2:50731257-50731276 | None:intergenic | 50.0% | |
| AATGAAGCAACTGTCGCAGC+TGG | + | chr4.2:50732663-50732682 | None:intergenic | 50.0% | |
| ACAATGGCAACATTGGCAGC+TGG | - | chr4.2:50730831-50730850 | MS.gene96117:intron | 50.0% | |
| ACATTGGCAGCTGGTGCTTT+AGG | - | chr4.2:50730840-50730859 | MS.gene96117:intron | 50.0% | |
| GTAATAGGCTTCCACCAGGT+GGG | + | chr4.2:50730307-50730326 | None:intergenic | 50.0% | |
| TGTAATAGGCTTCCACCAGG+TGG | + | chr4.2:50730308-50730327 | None:intergenic | 50.0% | |
| ! | AGCTGGTGCTTTAGGTGTTG+GGG | - | chr4.2:50730848-50730867 | MS.gene96117:intron | 50.0% |
| ! | CAGCTGGTGCTTTAGGTGTT+GGG | - | chr4.2:50730847-50730866 | MS.gene96117:intron | 50.0% |
| ! | GCTAGCTTATCTGGAGAGAC+AGG | - | chr4.2:50730882-50730901 | MS.gene96117:intron | 50.0% |
| !! | AGGTGTTGGGGCTCATTACT+TGG | - | chr4.2:50730860-50730879 | MS.gene96117:intron | 50.0% |
| GCAAGATGGGAACCAGGTCA+TGG | - | chr4.2:50731984-50732003 | MS.gene96117:intron | 55.0% | |
| GCGTTCGCAACGTGAGTTTC+TGG | + | chr4.2:50732564-50732583 | None:intergenic | 55.0% | |
| ! | ACCAGGTGGGAGCATGGAAA+GGG | + | chr4.2:50730294-50730313 | None:intergenic | 55.0% |
| ! | GCAGCTGGTGCTTTAGGTGT+TGG | - | chr4.2:50730846-50730865 | MS.gene96117:intron | 55.0% |
| ! | GCATATCTCGGTGCAAACGG+TGG | - | chr4.2:50730256-50730275 | MS.gene96117:CDS | 55.0% |
| ACCCTTTCCATGCTCCCACC+TGG | - | chr4.2:50730290-50730309 | MS.gene96117:CDS | 60.0% | |
| CTTTCCATGCTCCCACCTGG+TGG | - | chr4.2:50730293-50730312 | MS.gene96117:CDS | 60.0% | |
| GGCAGTGATGACTGTGGTGG+TGG | - | chr4.2:50730109-50730128 | MS.gene96117:CDS | 60.0% | |
| GTGGGCAGTGATGACTGTGG+TGG | - | chr4.2:50730106-50730125 | MS.gene96117:CDS | 60.0% | |
| ! | CACCAGGTGGGAGCATGGAA+AGG | + | chr4.2:50730295-50730314 | None:intergenic | 60.0% |
| GCTTCCACCAGGTGGGAGCA+TGG | + | chr4.2:50730300-50730319 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 50730104 | 50732902 | 50730104 | ID=MS.gene96117 |
| chr4.2 | mRNA | 50730104 | 50732902 | 50730104 | ID=MS.gene96117.t1;Parent=MS.gene96117 |
| chr4.2 | exon | 50732857 | 50732902 | 50732857 | ID=MS.gene96117.t1.exon1;Parent=MS.gene96117.t1 |
| chr4.2 | CDS | 50732857 | 50732902 | 50732857 | ID=cds.MS.gene96117.t1;Parent=MS.gene96117.t1 |
| chr4.2 | exon | 50732064 | 50732204 | 50732064 | ID=MS.gene96117.t1.exon2;Parent=MS.gene96117.t1 |
| chr4.2 | CDS | 50732064 | 50732204 | 50732064 | ID=cds.MS.gene96117.t1;Parent=MS.gene96117.t1 |
| chr4.2 | exon | 50731680 | 50731952 | 50731680 | ID=MS.gene96117.t1.exon3;Parent=MS.gene96117.t1 |
| chr4.2 | CDS | 50731680 | 50731952 | 50731680 | ID=cds.MS.gene96117.t1;Parent=MS.gene96117.t1 |
| chr4.2 | exon | 50731130 | 50731242 | 50731130 | ID=MS.gene96117.t1.exon4;Parent=MS.gene96117.t1 |
| chr4.2 | CDS | 50731130 | 50731242 | 50731130 | ID=cds.MS.gene96117.t1;Parent=MS.gene96117.t1 |
| chr4.2 | exon | 50730888 | 50731031 | 50730888 | ID=MS.gene96117.t1.exon5;Parent=MS.gene96117.t1 |
| chr4.2 | CDS | 50730888 | 50731031 | 50730888 | ID=cds.MS.gene96117.t1;Parent=MS.gene96117.t1 |
| chr4.2 | exon | 50730104 | 50730562 | 50730104 | ID=MS.gene96117.t1.exon6;Parent=MS.gene96117.t1 |
| chr4.2 | CDS | 50730104 | 50730562 | 50730104 | ID=cds.MS.gene96117.t1;Parent=MS.gene96117.t1 |
| Gene Sequence |
| Protein sequence |
