Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66665.t1 | XP_013455742.1 | 96.6 | 471 | 16 | 0 | 1 | 471 | 1 | 471 | 1.10E-252 | 882.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66665.t1 | Q9SJE8 | 54.0 | 437 | 194 | 2 | 29 | 462 | 1 | 433 | 3.7e-127 | 456.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66665.t1 | A0A072UL02 | 96.6 | 471 | 16 | 0 | 1 | 471 | 1 | 471 | 8.3e-253 | 882.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062180 | MS.gene66665 | PPI |
| MS.gene07488 | MS.gene66665 | PPI |
| MS.gene004961 | MS.gene66665 | PPI |
| MS.gene66665 | MS.gene07489 | PPI |
| MS.gene062179 | MS.gene66665 | PPI |
| MS.gene61659 | MS.gene66665 | PPI |
| MS.gene66665 | MS.gene044738 | PPI |
| MS.gene96117 | MS.gene66665 | PPI |
| MS.gene004960 | MS.gene66665 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66665.t1 | MTR_4g051575 | 96.603 | 471 | 16 | 0 | 1 | 471 | 1 | 471 | 0.0 | 943 |
| MS.gene66665.t1 | MTR_4g051575 | 96.119 | 335 | 12 | 1 | 137 | 471 | 4 | 337 | 0.0 | 662 |
| MS.gene66665.t1 | MTR_2g087288 | 48.359 | 457 | 226 | 4 | 6 | 459 | 2 | 451 | 9.43e-156 | 450 |
| MS.gene66665.t1 | MTR_7g106260 | 50.441 | 454 | 220 | 3 | 10 | 462 | 11 | 460 | 2.25e-154 | 447 |
| MS.gene66665.t1 | MTR_2g087285 | 48.946 | 427 | 206 | 4 | 1 | 423 | 1 | 419 | 1.58e-143 | 419 |
| MS.gene66665.t1 | MTR_1g077670 | 44.608 | 408 | 205 | 4 | 35 | 423 | 43 | 448 | 2.14e-116 | 350 |
| MS.gene66665.t1 | MTR_1g077660 | 45.636 | 401 | 194 | 5 | 35 | 414 | 37 | 434 | 2.57e-115 | 347 |
| MS.gene66665.t1 | MTR_1g115140 | 42.265 | 362 | 191 | 3 | 20 | 378 | 27 | 373 | 2.10e-91 | 288 |
| MS.gene66665.t1 | MTR_1g115175 | 41.989 | 362 | 200 | 3 | 20 | 379 | 23 | 376 | 4.33e-90 | 284 |
| MS.gene66665.t1 | MTR_4g098570 | 42.033 | 364 | 207 | 2 | 19 | 379 | 27 | 389 | 1.12e-89 | 283 |
| MS.gene66665.t1 | MTR_5g014310 | 40.470 | 383 | 222 | 4 | 2 | 379 | 17 | 398 | 1.21e-89 | 283 |
| MS.gene66665.t1 | MTR_7g094770 | 37.245 | 392 | 238 | 4 | 37 | 423 | 51 | 439 | 7.30e-86 | 270 |
| MS.gene66665.t1 | MTR_4g098610 | 40.872 | 367 | 210 | 4 | 18 | 379 | 25 | 389 | 6.53e-81 | 260 |
| MS.gene66665.t1 | MTR_1g115190 | 40.771 | 363 | 204 | 3 | 20 | 379 | 24 | 378 | 7.35e-81 | 260 |
| MS.gene66665.t1 | MTR_8g104130 | 32.827 | 329 | 214 | 5 | 29 | 355 | 47 | 370 | 3.16e-59 | 204 |
| MS.gene66665.t1 | MTR_8g104110 | 31.965 | 341 | 218 | 6 | 27 | 355 | 49 | 387 | 1.13e-58 | 203 |
| MS.gene66665.t1 | MTR_1g111250 | 32.822 | 326 | 207 | 4 | 41 | 357 | 74 | 396 | 3.80e-57 | 198 |
| MS.gene66665.t1 | MTR_6g084680 | 31.233 | 365 | 237 | 5 | 4 | 355 | 44 | 407 | 2.02e-56 | 197 |
| MS.gene66665.t1 | MTR_8g104120 | 32.615 | 325 | 206 | 5 | 41 | 355 | 60 | 381 | 1.53e-51 | 184 |
| MS.gene66665.t1 | MTR_0710s0020 | 47.904 | 167 | 80 | 1 | 20 | 186 | 24 | 183 | 5.91e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66665.t1 | AT2G27240 | 54.422 | 441 | 196 | 3 | 29 | 466 | 1 | 439 | 2.30e-172 | 493 |
| MS.gene66665.t1 | AT1G08440 | 57.868 | 394 | 163 | 1 | 29 | 419 | 1 | 394 | 2.31e-171 | 491 |
| MS.gene66665.t1 | AT2G27240 | 51.392 | 467 | 196 | 4 | 29 | 466 | 1 | 465 | 9.35e-167 | 480 |
| MS.gene66665.t1 | AT1G08430 | 50.111 | 449 | 217 | 3 | 29 | 471 | 1 | 448 | 6.99e-159 | 459 |
| MS.gene66665.t1 | AT3G11680 | 49.781 | 456 | 215 | 7 | 18 | 462 | 13 | 465 | 6.55e-146 | 426 |
| MS.gene66665.t1 | AT3G11680 | 49.781 | 456 | 215 | 7 | 18 | 462 | 15 | 467 | 7.31e-146 | 426 |
| MS.gene66665.t1 | AT4G00910 | 40.363 | 441 | 236 | 3 | 26 | 440 | 43 | 482 | 4.34e-114 | 345 |
| MS.gene66665.t1 | AT4G17970 | 42.105 | 361 | 197 | 2 | 19 | 379 | 28 | 376 | 2.59e-92 | 291 |
| MS.gene66665.t1 | AT5G46600 | 41.620 | 358 | 202 | 2 | 28 | 379 | 29 | 385 | 5.65e-90 | 284 |
| MS.gene66665.t1 | AT5G46610 | 41.690 | 355 | 203 | 2 | 28 | 379 | 28 | 381 | 1.13e-88 | 281 |
| MS.gene66665.t1 | AT5G46610 | 38.028 | 355 | 192 | 3 | 28 | 379 | 28 | 357 | 1.06e-74 | 244 |
| MS.gene66665.t1 | AT5G46610 | 35.775 | 355 | 177 | 3 | 28 | 379 | 28 | 334 | 2.28e-67 | 224 |
| MS.gene66665.t1 | AT3G18440 | 33.333 | 330 | 209 | 4 | 35 | 355 | 73 | 400 | 7.45e-63 | 214 |
| MS.gene66665.t1 | AT1G18420 | 31.198 | 359 | 233 | 6 | 28 | 375 | 70 | 425 | 2.38e-57 | 199 |
| MS.gene66665.t1 | AT1G18420 | 31.965 | 341 | 218 | 6 | 46 | 375 | 5 | 342 | 2.76e-57 | 197 |
| MS.gene66665.t1 | AT2G17470 | 30.973 | 339 | 219 | 5 | 24 | 353 | 18 | 350 | 2.10e-56 | 196 |
| MS.gene66665.t1 | AT1G68600 | 32.615 | 325 | 208 | 4 | 42 | 357 | 49 | 371 | 2.29e-56 | 196 |
| MS.gene66665.t1 | AT1G25480 | 32.378 | 349 | 224 | 5 | 41 | 380 | 59 | 404 | 4.09e-56 | 195 |
| MS.gene66665.t1 | AT2G17470 | 30.973 | 339 | 219 | 5 | 24 | 353 | 40 | 372 | 4.60e-56 | 196 |
| MS.gene66665.t1 | AT4G17585 | 45.161 | 62 | 34 | 0 | 30 | 91 | 28 | 89 | 1.15e-11 | 63.2 |
Find 63 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGCTTCAATCAAGTTTA+TGG | 0.032989 | 4.3:-48640795 | MS.gene66665:CDS |
| CATTACTTGGCTAGCTTATC+TGG | 0.169349 | 4.3:-48642526 | MS.gene66665:CDS |
| CAACCACTTTATGAAAATTT+TGG | 0.182547 | 4.3:-48643361 | MS.gene66665:CDS |
| TGGTTCCCATCTTGCAAAAT+TGG | 0.218158 | 4.3:+48641429 | None:intergenic |
| TGGAATCAATACCTTAAAAT+TGG | 0.229282 | 4.3:-48641376 | MS.gene66665:CDS |
| TTCTCTTTAATATCTGTATC+TGG | 0.259432 | 4.3:-48642271 | MS.gene66665:CDS |
| GTGAAATCAAGATATGATTA+TGG | 0.273521 | 4.3:-48642316 | MS.gene66665:CDS |
| ACAGGGGAACCAATTCTAAT+TGG | 0.279623 | 4.3:-48642499 | MS.gene66665:CDS |
| ACATTTCTGTGCATAGTTCT+TGG | 0.282571 | 4.3:+48640935 | None:intergenic |
| TCATATCTTGATTTCACTTT+GGG | 0.284806 | 4.3:+48642322 | None:intergenic |
| GCTTTCTCTTGGTCCATGTT+TGG | 0.290756 | 4.3:+48643559 | None:intergenic |
| GGAGATTGTGACACTTCTTT+AGG | 0.293984 | 4.3:+48640622 | None:intergenic |
| ACATTGGTAGCTGGTGCTTT+AGG | 0.317161 | 4.3:-48642559 | MS.gene66665:CDS |
| AGTTGGACTTGCAATCTCTT+TGG | 0.318396 | 4.3:-48643404 | MS.gene66665:CDS |
| TAGCTGGTGCTTTAGGTGTT+GGG | 0.321949 | 4.3:-48642552 | MS.gene66665:CDS |
| GCGTTCGCAACGTGAGTTTC+CGG | 0.336235 | 4.3:+48640844 | None:intergenic |
| ACATGTGAGTTCTCAATCTT+AGG | 0.357707 | 4.3:+48640574 | None:intergenic |
| AGGTGTTGGGGCTCATTACT+TGG | 0.372554 | 4.3:-48642539 | MS.gene66665:CDS |
| ACAAAGAATCCAATTAGAAT+TGG | 0.373993 | 4.3:+48642490 | None:intergenic |
| CTTTAGGAAAAGGTTTGAAT+AGG | 0.382546 | 4.3:-48642591 | MS.gene66665:CDS |
| TTGATTGAAGCAACGAGTTA+AGG | 0.386024 | 4.3:+48640803 | None:intergenic |
| ACCTTCTTCATAAGAACCTT+TGG | 0.391062 | 4.3:+48643496 | None:intergenic |
| ATCATATCTTGATTTCACTT+TGG | 0.405404 | 4.3:+48642321 | None:intergenic |
| ATACTTGGTAGCTTCTTAGA+AGG | 0.413754 | 4.3:-48642100 | MS.gene66665:intron |
| TGAAATCAAGATATGATTAT+GGG | 0.418681 | 4.3:-48642315 | MS.gene66665:CDS |
| TCCAAAGGTTCTTATGAAGA+AGG | 0.419353 | 4.3:-48643497 | MS.gene66665:CDS |
| GTAGCTGGTGCTTTAGGTGT+TGG | 0.424814 | 4.3:-48642553 | MS.gene66665:CDS |
| TTAGGAGCTACTTTAGGAAA+AGG | 0.426037 | 4.3:-48642601 | MS.gene66665:intron |
| AGTTCAAATTTCGTCACCCT+TGG | 0.430578 | 4.3:-48641396 | MS.gene66665:CDS |
| CATGTGTACTAGTTAGAGTA+TGG | 0.433301 | 4.3:-48643537 | MS.gene66665:CDS |
| GTGATTCATTCACTAAAAGT+TGG | 0.434830 | 4.3:-48643421 | MS.gene66665:CDS |
| GCTAGCTTATCTGGAGAGAC+AGG | 0.435266 | 4.3:-48642517 | MS.gene66665:CDS |
| GAGTTCTCAATCTTAGGATC+TGG | 0.455186 | 4.3:+48640580 | None:intergenic |
| GCTATCAAGTTGGAAATACT+TGG | 0.466925 | 4.3:-48642115 | MS.gene66665:CDS |
| AACTCTTCACCAGCCCAAAC+AGG | 0.473547 | 4.3:+48642151 | None:intergenic |
| CTAGTACACATGCTTTCTCT+TGG | 0.478160 | 4.3:+48643548 | None:intergenic |
| TGATGATGAAGTATTACAAA+TGG | 0.486318 | 4.3:-48642242 | MS.gene66665:CDS |
| AGCTGGTGCTTTAGGTGTTG+GGG | 0.490031 | 4.3:-48642551 | MS.gene66665:CDS |
| TTTGTTTGTCCTGTTTGGGC+TGG | 0.492028 | 4.3:-48642160 | MS.gene66665:CDS |
| ATATCGAATGGAAGCTCTAA+AGG | 0.501202 | 4.3:-48641332 | MS.gene66665:CDS |
| GGCAGTGATGACTGTGGTGG+TGG | 0.502115 | 4.3:-48643323 | MS.gene66665:CDS |
| TATTACAAATGGCTCATAAG+AGG | 0.504629 | 4.3:-48642231 | MS.gene66665:CDS |
| GGATTCTTTGTATTTCTACA+AGG | 0.514172 | 4.3:-48642478 | MS.gene66665:intron |
| CAATATGGTGTCTCCAAACA+TGG | 0.518606 | 4.3:-48643572 | None:intergenic |
| TAAAAGCAATGATGAGTCAC+TGG | 0.520604 | 4.3:-48641550 | MS.gene66665:intron |
| AATTTGAACTTGCCATGACC+TGG | 0.528501 | 4.3:+48641409 | None:intergenic |
| TGACTCAATTGCTATCAAGT+TGG | 0.535480 | 4.3:-48642125 | MS.gene66665:CDS |
| AATGAAGCAACTGTCGCAGC+TGG | 0.536056 | 4.3:+48640745 | None:intergenic |
| GAATAGGACAATGGCAACAT+TGG | 0.537381 | 4.3:-48642575 | MS.gene66665:CDS |
| GCAAGATGGGAACCAGGTCA+TGG | 0.553785 | 4.3:-48641421 | MS.gene66665:CDS |
| GGTTCAGCACATTCACATGT+TGG | 0.558533 | 4.3:+48640601 | None:intergenic |
| ACAATGGCAACATTGGTAGC+TGG | 0.571785 | 4.3:-48642568 | MS.gene66665:CDS |
| TCGTCAATGTGCATATCGAA+TGG | 0.577376 | 4.3:-48641344 | MS.gene66665:CDS |
| CTAGCTTATCTGGAGAGACA+GGG | 0.601883 | 4.3:-48642516 | MS.gene66665:CDS |
| AAAAGGTTTGAATAGGACAA+TGG | 0.617027 | 4.3:-48642584 | MS.gene66665:CDS |
| AATGACAAGAAAGTCATCAC+CGG | 0.619784 | 4.3:-48640863 | MS.gene66665:CDS |
| TAGCTTATCTGGAGAGACAG+GGG | 0.659742 | 4.3:-48642515 | MS.gene66665:CDS |
| TGAGTACTTCGAAACAACAA+AGG | 0.669928 | 4.3:-48641631 | MS.gene66665:CDS |
| GTGGGCAGTGATGACTGTGG+TGG | 0.678035 | 4.3:-48643326 | MS.gene66665:CDS |
| AATGTGCTTAGAATCAAGCA+TGG | 0.692895 | 4.3:-48640917 | MS.gene66665:CDS |
| TAAGATTGAGAACTCACATG+TGG | 0.703897 | 4.3:-48640572 | MS.gene66665:CDS |
| TGATATTGTTGATTGCACTG+AGG | 0.767820 | 4.3:-48640716 | MS.gene66665:CDS |
| AATGTGGGCAGTGATGACTG+TGG | 0.817988 | 4.3:-48643329 | MS.gene66665:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATAAATATTTTTTA+TGG | + | chr4.3:48641013-48641032 | None:intergenic | 0.0% |
| !!! | ATATGTGAAAATTTTATTTA+TGG | - | chr4.3:48642602-48642621 | MS.gene66665:intron | 10.0% |
| !!! | TATAAAAAGTATATTTCATT+TGG | - | chr4.3:48641033-48641052 | MS.gene66665:intron | 10.0% |
| !!! | TATATCAATTTATTTTTTGA+GGG | + | chr4.3:48641248-48641267 | None:intergenic | 10.0% |
| !!! | TCTTTATTATAACATTTTTT+TGG | + | chr4.3:48641659-48641678 | None:intergenic | 10.0% |
| !!! | TTATATCAATTTATTTTTTG+AGG | + | chr4.3:48641249-48641268 | None:intergenic | 10.0% |
| !!! | TTTTATCTTTACTTTATTAT+AGG | - | chr4.3:48642641-48642660 | MS.gene66665:intron | 10.0% |
| !! | AAAAAAATAAAAGAGAACTA+AGG | - | chr4.3:48641134-48641153 | MS.gene66665:intron | 15.0% |
| !! | TAAATAAGGATATATAATAG+TGG | + | chr4.3:48642206-48642225 | None:intergenic | 15.0% |
| !! | TAGATGAAATTCAATAAATA+AGG | + | chr4.3:48642220-48642239 | None:intergenic | 15.0% |
| !! | TTCAAAATAATTATCGTTTA+AGG | + | chr4.3:48642351-48642370 | None:intergenic | 15.0% |
| !!! | AAATGCATATTTTAGATTTA+TGG | + | chr4.3:48642824-48642843 | None:intergenic | 15.0% |
| !!! | ATATAATATGTCACATTTTT+AGG | - | chr4.3:48641474-48641493 | MS.gene66665:intron | 15.0% |
| !!! | ATTTTTTATGGAAAACAAAA+GGG | + | chr4.3:48641001-48641020 | None:intergenic | 15.0% |
| !!! | TACGATTAATAAAAGTATTT+TGG | - | chr4.3:48642259-48642278 | MS.gene66665:CDS | 15.0% |
| !!! | TATTTTTTATGGAAAACAAA+AGG | + | chr4.3:48641002-48641021 | None:intergenic | 15.0% |
| !!! | TTGTTTATAGACATAATTTT+TGG | + | chr4.3:48642074-48642093 | None:intergenic | 15.0% |
| !! | CGAAGATCTAAATTTAATTA+GGG | + | chr4.3:48643037-48643056 | None:intergenic | 20.0% |
| !! | TGAAATCAAGATATGATTAT+GGG | - | chr4.3:48641778-48641797 | MS.gene66665:intron | 20.0% |
| !!! | AAAAGACAATTATTTTGAGA+CGG | + | chr4.3:48642115-48642134 | None:intergenic | 20.0% |
| !!! | AAACGATAATTATTTTGAAG+TGG | - | chr4.3:48642352-48642371 | MS.gene66665:CDS | 20.0% |
| !!! | CTCTTTTATTTTTTTTCCAA+CGG | + | chr4.3:48641129-48641148 | None:intergenic | 20.0% |
| !!! | TAGATTTTTGATCATTTCAA+TGG | - | chr4.3:48641061-48641080 | MS.gene66665:intron | 20.0% |
| !!! | TTCTTTTCAAAATCAAACTA+AGG | - | chr4.3:48640896-48640915 | MS.gene66665:CDS | 20.0% |
| !!! | TTTTTGTTCTATCTTATGTA+GGG | - | chr4.3:48643111-48643130 | MS.gene66665:intron | 20.0% |
| !!! | TTTTTTGTTCTATCTTATGT+AGG | - | chr4.3:48643110-48643129 | MS.gene66665:intron | 20.0% |
| ! | ACAAAGAATCCAATTAGAAT+TGG | + | chr4.3:48641606-48641625 | None:intergenic | 25.0% |
| ! | ATCATATCTTGATTTCACTT+TGG | + | chr4.3:48641775-48641794 | None:intergenic | 25.0% |
| ! | ATGGTATATGATGTATACTT+TGG | + | chr4.3:48642805-48642824 | None:intergenic | 25.0% |
| ! | GATAAAAAGTCATTTCTTGA+AGG | - | chr4.3:48642499-48642518 | MS.gene66665:CDS | 25.0% |
| ! | GCGAAGATCTAAATTTAATT+AGG | + | chr4.3:48643038-48643057 | None:intergenic | 25.0% |
| ! | GTGAAATCAAGATATGATTA+TGG | - | chr4.3:48641777-48641796 | MS.gene66665:intron | 25.0% |
| ! | TCATATCTTGATTTCACTTT+GGG | + | chr4.3:48641774-48641793 | None:intergenic | 25.0% |
| ! | TGGAATCAATACCTTAAAAT+TGG | - | chr4.3:48642717-48642736 | MS.gene66665:intron | 25.0% |
| ! | TTCTCTTTAATATCTGTATC+TGG | - | chr4.3:48641822-48641841 | MS.gene66665:intron | 25.0% |
| ! | TTGTACTATTGTGTAGAATA+TGG | + | chr4.3:48640845-48640864 | None:intergenic | 25.0% |
| !! | AGACCAAAATTTTCATAAAG+TGG | + | chr4.3:48640738-48640757 | None:intergenic | 25.0% |
| !! | CAACCACTTTATGAAAATTT+TGG | - | chr4.3:48640732-48640751 | MS.gene66665:CDS | 25.0% |
| !! | CTTTTATTAATCGTAGTTAG+TGG | + | chr4.3:48642254-48642273 | None:intergenic | 25.0% |
| !! | TGATGATGAAGTATTACAAA+TGG | - | chr4.3:48641851-48641870 | MS.gene66665:intron | 25.0% |
| !! | TTTTAGTATACTTGAGATCA+TGG | + | chr4.3:48642908-48642927 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGTATTGATTCCA+AGG | + | chr4.3:48642717-48642736 | None:intergenic | 25.0% |
| !!! | TTTTAAGGTATTGATTCCAA+GGG | + | chr4.3:48642716-48642735 | None:intergenic | 25.0% |
| !!! | TTTTATTTTTTTTCCAACGG+AGG | + | chr4.3:48641126-48641145 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGCAGCATTTGT+AGG | - | chr4.3:48642439-48642458 | MS.gene66665:intron | 25.0% |
| AAAAGGTTTGAATAGGACAA+TGG | - | chr4.3:48641509-48641528 | MS.gene66665:intron | 30.0% | |
| AATCAAACTAAGGCATATCT+CGG | - | chr4.3:48640906-48640925 | MS.gene66665:CDS | 30.0% | |
| GTGATTCATTCACTAAAAGT+TGG | - | chr4.3:48640672-48640691 | MS.gene66665:CDS | 30.0% | |
| TATTACAAATGGCTCATAAG+AGG | - | chr4.3:48641862-48641881 | MS.gene66665:intron | 30.0% | |
| TTAATCTTAGACTATGTGTC+TGG | + | chr4.3:48643013-48643032 | None:intergenic | 30.0% | |
| ! | AAAAACCGATTTATCCATTG+AGG | - | chr4.3:48641390-48641409 | MS.gene66665:CDS | 30.0% |
| ! | CTGCTATAGCATCTTTTATA+AGG | - | chr4.3:48641742-48641761 | MS.gene66665:intron | 30.0% |
| ! | CTTTAGGAAAAGGTTTGAAT+AGG | - | chr4.3:48641502-48641521 | MS.gene66665:intron | 30.0% |
| ! | GCAAATAAAAGCTTTTCCAA+AGG | - | chr4.3:48640581-48640600 | MS.gene66665:CDS | 30.0% |
| ! | GGATTCTTTGTATTTCTACA+AGG | - | chr4.3:48641615-48641634 | MS.gene66665:CDS | 30.0% |
| !! | ACATTTTTAGGAGCTACTTT+AGG | - | chr4.3:48641486-48641505 | MS.gene66665:intron | 30.0% |
| !! | AGTGAATGAATCACTTTTCT+TGG | + | chr4.3:48640666-48640685 | None:intergenic | 30.0% |
| !! | CATTTTTGTTTGTCCTGTTT+GGG | - | chr4.3:48641929-48641948 | MS.gene66665:intron | 30.0% |
| !! | GTGAATGAATCACTTTTCTT+GGG | + | chr4.3:48640665-48640684 | None:intergenic | 30.0% |
| !! | TGTCTGGTTTGGATTATTTA+TGG | + | chr4.3:48642997-48643016 | None:intergenic | 30.0% |
| AATGACAAGAAAGTCATCAC+CGG | - | chr4.3:48643230-48643249 | MS.gene66665:intron | 35.0% | |
| AATGTGCTTAGAATCAAGCA+TGG | - | chr4.3:48643176-48643195 | MS.gene66665:intron | 35.0% | |
| ACATGTGAGTTCTCAATCTT+AGG | + | chr4.3:48643522-48643541 | None:intergenic | 35.0% | |
| ACATTTCTGTGCATAGTTCT+TGG | + | chr4.3:48643161-48643180 | None:intergenic | 35.0% | |
| ACCTTCTTCATAAGAACCTT+TGG | + | chr4.3:48640600-48640619 | None:intergenic | 35.0% | |
| AGCATCCTCAATGGATAAAT+CGG | + | chr4.3:48641398-48641417 | None:intergenic | 35.0% | |
| ATAATTTCCTTGCATTCACG+TGG | + | chr4.3:48642972-48642991 | None:intergenic | 35.0% | |
| CATGTGTACTAGTTAGAGTA+TGG | - | chr4.3:48640556-48640575 | MS.gene66665:CDS | 35.0% | |
| CCAAACAGGACAAACAAAAA+TGG | + | chr4.3:48641931-48641950 | None:intergenic | 35.0% | |
| CGTTGCTTCAATCAAGTTTA+TGG | - | chr4.3:48643298-48643317 | MS.gene66665:intron | 35.0% | |
| TAAAAGCAATGATGAGTCAC+TGG | - | chr4.3:48642543-48642562 | MS.gene66665:CDS | 35.0% | |
| TAAGATTGAGAACTCACATG+TGG | - | chr4.3:48643521-48643540 | MS.gene66665:CDS | 35.0% | |
| TCCAAAGGTTCTTATGAAGA+AGG | - | chr4.3:48640596-48640615 | MS.gene66665:CDS | 35.0% | |
| TGACTCAATTGCTATCAAGT+TGG | - | chr4.3:48641968-48641987 | MS.gene66665:intron | 35.0% | |
| TGAGTACTTCGAAACAACAA+AGG | - | chr4.3:48642462-48642481 | MS.gene66665:intron | 35.0% | |
| TTGATTGAAGCAACGAGTTA+AGG | + | chr4.3:48643293-48643312 | None:intergenic | 35.0% | |
| ! | ATACTTGGTAGCTTCTTAGA+AGG | - | chr4.3:48641993-48642012 | MS.gene66665:intron | 35.0% |
| ! | ATAGGCCAATTTTGCAAGAT+GGG | - | chr4.3:48642659-48642678 | MS.gene66665:intron | 35.0% |
| ! | ATATCGAATGGAAGCTCTAA+AGG | - | chr4.3:48642761-48642780 | MS.gene66665:intron | 35.0% |
| ! | TATAGGCCAATTTTGCAAGA+TGG | - | chr4.3:48642658-48642677 | MS.gene66665:intron | 35.0% |
| ! | TGATATTGTTGATTGCACTG+AGG | - | chr4.3:48643377-48643396 | MS.gene66665:CDS | 35.0% |
| ! | TTAGGAGCTACTTTAGGAAA+AGG | - | chr4.3:48641492-48641511 | MS.gene66665:intron | 35.0% |
| !! | AGGTTATCCACCATTTTTCT+TGG | - | chr4.3:48641882-48641901 | MS.gene66665:intron | 35.0% |
| !! | ATTACTAAGAGCATCCTCAA+TGG | + | chr4.3:48641407-48641426 | None:intergenic | 35.0% |
| !! | ATTTTGGTCTTTCAGCAATG+TGG | - | chr4.3:48640748-48640767 | MS.gene66665:CDS | 35.0% |
| !! | CCATTTTTGTTTGTCCTGTT+TGG | - | chr4.3:48641928-48641947 | MS.gene66665:intron | 35.0% |
| !! | GAGAAAGTGCACCAATTTTA+AGG | + | chr4.3:48642731-48642750 | None:intergenic | 35.0% |
| !! | GCTATCAAGTTGGAAATACT+TGG | - | chr4.3:48641978-48641997 | MS.gene66665:intron | 35.0% |
| !! | TTATCCACCATTTTTCTTGG+AGG | - | chr4.3:48641885-48641904 | MS.gene66665:intron | 35.0% |
| !! | TTTTGGTCTTTCAGCAATGT+GGG | - | chr4.3:48640749-48640768 | MS.gene66665:CDS | 35.0% |
| AAAGGGCAGCTTAGTGTAAT+AGG | + | chr4.3:48640984-48641003 | None:intergenic | 40.0% | |
| AATTTGAACTTGCCATGACC+TGG | + | chr4.3:48642687-48642706 | None:intergenic | 40.0% | |
| ACAGGGGAACCAATTCTAAT+TGG | - | chr4.3:48641594-48641613 | MS.gene66665:CDS | 40.0% | |
| AGAACCTCCAAGAAAAATGG+TGG | + | chr4.3:48641892-48641911 | None:intergenic | 40.0% | |
| AGCAGAACCTCCAAGAAAAA+TGG | + | chr4.3:48641895-48641914 | None:intergenic | 40.0% | |
| AGTCTTAGCTTCGTAAGACA+TGG | - | chr4.3:48641087-48641106 | MS.gene66665:intron | 40.0% | |
| AGTTCAAATTTCGTCACCCT+TGG | - | chr4.3:48642697-48642716 | MS.gene66665:intron | 40.0% | |
| AGTTGGACTTGCAATCTCTT+TGG | - | chr4.3:48640689-48640708 | MS.gene66665:CDS | 40.0% | |
| CTAGTACACATGCTTTCTCT+TGG | + | chr4.3:48640548-48640567 | None:intergenic | 40.0% | |
| CTTAGACTATGTGTCTGGTT+TGG | + | chr4.3:48643008-48643027 | None:intergenic | 40.0% | |
| GAATAGGACAATGGCAACAT+TGG | - | chr4.3:48641518-48641537 | MS.gene66665:intron | 40.0% | |
| GAGTTCTCAATCTTAGGATC+TGG | + | chr4.3:48643516-48643535 | None:intergenic | 40.0% | |
| GGAGATTGTGACACTTCTTT+AGG | + | chr4.3:48643474-48643493 | None:intergenic | 40.0% | |
| TACCTAATAGATACCTCCGT+TGG | - | chr4.3:48641110-48641129 | MS.gene66665:intron | 40.0% | |
| TCGTCAATGTGCATATCGAA+TGG | - | chr4.3:48642749-48642768 | MS.gene66665:intron | 40.0% | |
| TCTAATGACTCTGAGCTACT+AGG | + | chr4.3:48642871-48642890 | None:intergenic | 40.0% | |
| TGGTTCCCATCTTGCAAAAT+TGG | + | chr4.3:48642667-48642686 | None:intergenic | 40.0% | |
| ! | AATTTTGCAAGATGGGAACC+AGG | - | chr4.3:48642666-48642685 | MS.gene66665:intron | 40.0% |
| ! | CGAGTTAAGGCTTTTTACTG+CGG | + | chr4.3:48643280-48643299 | None:intergenic | 40.0% |
| !! | CATTACTTGGCTAGCTTATC+TGG | - | chr4.3:48641567-48641586 | MS.gene66665:CDS | 40.0% |
| !! | TTCCAACGGAGGTATCTATT+AGG | + | chr4.3:48641115-48641134 | None:intergenic | 40.0% |
| !!! | GTGGTTTTTGAGTACACAGT+TGG | - | chr4.3:48640789-48640808 | MS.gene66665:CDS | 40.0% |
| AAGCAATGATGAGTCACTGG+TGG | - | chr4.3:48642546-48642565 | MS.gene66665:CDS | 45.0% | |
| AGCAATGATGAGTCACTGGT+GGG | - | chr4.3:48642547-48642566 | MS.gene66665:CDS | 45.0% | |
| CTACTTACCACGTGAATGCA+AGG | - | chr4.3:48642962-48642981 | MS.gene66665:intron | 45.0% | |
| CTAGCTTATCTGGAGAGACA+GGG | - | chr4.3:48641577-48641596 | MS.gene66665:CDS | 45.0% | |
| GCTTTCTCTTGGTCCATGTT+TGG | + | chr4.3:48640537-48640556 | None:intergenic | 45.0% | |
| GGTAAGTAGCTCAGAGTCAT+TGG | + | chr4.3:48642951-48642970 | None:intergenic | 45.0% | |
| GGTTCAGCACATTCACATGT+TGG | + | chr4.3:48643495-48643514 | None:intergenic | 45.0% | |
| TAGCTTATCTGGAGAGACAG+GGG | - | chr4.3:48641578-48641597 | MS.gene66665:CDS | 45.0% | |
| TAGTGTAATAGGCTTCCACC+AGG | + | chr4.3:48640973-48640992 | None:intergenic | 45.0% | |
| TTTGTTTGTCCTGTTTGGGC+TGG | - | chr4.3:48641933-48641952 | MS.gene66665:intron | 45.0% | |
| ! | AAGGCATATCTCGGTGCAAA+CGG | - | chr4.3:48640915-48640934 | MS.gene66665:CDS | 45.0% |
| ! | ACAATGGCAACATTGGTAGC+TGG | - | chr4.3:48641525-48641544 | MS.gene66665:intron | 45.0% |
| ! | ACATTGGTAGCTGGTGCTTT+AGG | - | chr4.3:48641534-48641553 | MS.gene66665:intron | 45.0% |
| ! | TAGCTGGTGCTTTAGGTGTT+GGG | - | chr4.3:48641541-48641560 | MS.gene66665:intron | 45.0% |
| !! | AAAAATAATAAATGTTATAT+TGG | + | chr4.3:48642181-48642200 | None:intergenic | 5.0% |
| AACTCTTCACCAGCCCAAAC+AGG | + | chr4.3:48641945-48641964 | None:intergenic | 50.0% | |
| AATGAAGCAACTGTCGCAGC+TGG | + | chr4.3:48643351-48643370 | None:intergenic | 50.0% | |
| AATGTGGGCAGTGATGACTG+TGG | - | chr4.3:48640764-48640783 | MS.gene66665:CDS | 50.0% | |
| GTAATAGGCTTCCACCAGGT+GGG | + | chr4.3:48640969-48640988 | None:intergenic | 50.0% | |
| TGTAATAGGCTTCCACCAGG+TGG | + | chr4.3:48640970-48640989 | None:intergenic | 50.0% | |
| ! | AGCTGGTGCTTTAGGTGTTG+GGG | - | chr4.3:48641542-48641561 | MS.gene66665:intron | 50.0% |
| ! | GCTAGCTTATCTGGAGAGAC+AGG | - | chr4.3:48641576-48641595 | MS.gene66665:CDS | 50.0% |
| ! | GTAGCTGGTGCTTTAGGTGT+TGG | - | chr4.3:48641540-48641559 | MS.gene66665:intron | 50.0% |
| !! | AGGTGTTGGGGCTCATTACT+TGG | - | chr4.3:48641554-48641573 | MS.gene66665:CDS | 50.0% |
| GCAAGATGGGAACCAGGTCA+TGG | - | chr4.3:48642672-48642691 | MS.gene66665:intron | 55.0% | |
| GCGTTCGCAACGTGAGTTTC+CGG | + | chr4.3:48643252-48643271 | None:intergenic | 55.0% | |
| ! | ACCAGGTGGGAGCATGGAAA+GGG | + | chr4.3:48640956-48640975 | None:intergenic | 55.0% |
| ! | GCATATCTCGGTGCAAACGG+TGG | - | chr4.3:48640918-48640937 | MS.gene66665:CDS | 55.0% |
| ACCCTTTCCATGCTCCCACC+TGG | - | chr4.3:48640952-48640971 | MS.gene66665:CDS | 60.0% | |
| CTTTCCATGCTCCCACCTGG+TGG | - | chr4.3:48640955-48640974 | MS.gene66665:CDS | 60.0% | |
| GGCAGTGATGACTGTGGTGG+TGG | - | chr4.3:48640770-48640789 | MS.gene66665:CDS | 60.0% | |
| GTGGGCAGTGATGACTGTGG+TGG | - | chr4.3:48640767-48640786 | MS.gene66665:CDS | 60.0% | |
| ! | CACCAGGTGGGAGCATGGAA+AGG | + | chr4.3:48640957-48640976 | None:intergenic | 60.0% |
| GCTTCCACCAGGTGGGAGCA+TGG | + | chr4.3:48640962-48640981 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 48640525 | 48643590 | 48640525 | ID=MS.gene66665 |
| chr4.3 | mRNA | 48640525 | 48643590 | 48640525 | ID=MS.gene66665.t1;Parent=MS.gene66665 |
| chr4.3 | exon | 48643305 | 48643590 | 48643305 | ID=MS.gene66665.t1.exon1;Parent=MS.gene66665.t1 |
| chr4.3 | CDS | 48643305 | 48643590 | 48643305 | ID=cds.MS.gene66665.t1;Parent=MS.gene66665.t1 |
| chr4.3 | exon | 48642479 | 48642619 | 48642479 | ID=MS.gene66665.t1.exon2;Parent=MS.gene66665.t1 |
| chr4.3 | CDS | 48642479 | 48642619 | 48642479 | ID=cds.MS.gene66665.t1;Parent=MS.gene66665.t1 |
| chr4.3 | exon | 48642101 | 48642373 | 48642101 | ID=MS.gene66665.t1.exon3;Parent=MS.gene66665.t1 |
| chr4.3 | CDS | 48642101 | 48642373 | 48642101 | ID=cds.MS.gene66665.t1;Parent=MS.gene66665.t1 |
| chr4.3 | exon | 48641551 | 48641663 | 48641551 | ID=MS.gene66665.t1.exon4;Parent=MS.gene66665.t1 |
| chr4.3 | CDS | 48641551 | 48641663 | 48641551 | ID=cds.MS.gene66665.t1;Parent=MS.gene66665.t1 |
| chr4.3 | exon | 48641309 | 48641452 | 48641309 | ID=MS.gene66665.t1.exon5;Parent=MS.gene66665.t1 |
| chr4.3 | CDS | 48641309 | 48641452 | 48641309 | ID=cds.MS.gene66665.t1;Parent=MS.gene66665.t1 |
| chr4.3 | exon | 48640525 | 48640983 | 48640525 | ID=MS.gene66665.t1.exon6;Parent=MS.gene66665.t1 |
| chr4.3 | CDS | 48640525 | 48640983 | 48640525 | ID=cds.MS.gene66665.t1;Parent=MS.gene66665.t1 |
| Gene Sequence |
| Protein sequence |
