Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044738.t1 | XP_013455742.1 | 97.7 | 471 | 11 | 0 | 1 | 471 | 1 | 471 | 8.50E-256 | 892.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044738.t1 | Q9SJE8 | 53.8 | 437 | 195 | 2 | 29 | 462 | 1 | 433 | 4.9e-127 | 456.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044738.t1 | A0A072UL02 | 97.7 | 471 | 11 | 0 | 1 | 471 | 1 | 471 | 6.1e-256 | 892.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61659 | MS.gene044738 | PPI |
| MS.gene96117 | MS.gene044738 | PPI |
| MS.gene062180 | MS.gene044738 | PPI |
| MS.gene004960 | MS.gene044738 | PPI |
| MS.gene07489 | MS.gene044738 | PPI |
| MS.gene07488 | MS.gene044738 | PPI |
| MS.gene66665 | MS.gene044738 | PPI |
| MS.gene062179 | MS.gene044738 | PPI |
| MS.gene004961 | MS.gene044738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044738.t1 | MTR_4g051575 | 97.665 | 471 | 11 | 0 | 1 | 471 | 1 | 471 | 0.0 | 951 |
| MS.gene044738.t1 | MTR_4g051575 | 97.015 | 335 | 9 | 1 | 137 | 471 | 4 | 337 | 0.0 | 667 |
| MS.gene044738.t1 | MTR_2g087288 | 48.578 | 457 | 225 | 4 | 6 | 459 | 2 | 451 | 2.93e-155 | 449 |
| MS.gene044738.t1 | MTR_7g106260 | 50.000 | 454 | 222 | 3 | 10 | 462 | 11 | 460 | 6.95e-153 | 444 |
| MS.gene044738.t1 | MTR_2g087285 | 49.180 | 427 | 205 | 4 | 1 | 423 | 1 | 419 | 1.17e-142 | 416 |
| MS.gene044738.t1 | MTR_1g077670 | 44.118 | 408 | 207 | 3 | 35 | 423 | 43 | 448 | 1.35e-115 | 348 |
| MS.gene044738.t1 | MTR_1g077660 | 45.636 | 401 | 194 | 5 | 35 | 414 | 37 | 434 | 1.19e-114 | 345 |
| MS.gene044738.t1 | MTR_1g115140 | 41.713 | 362 | 193 | 3 | 20 | 378 | 27 | 373 | 5.84e-90 | 284 |
| MS.gene044738.t1 | MTR_4g098570 | 41.758 | 364 | 208 | 2 | 19 | 379 | 27 | 389 | 2.61e-89 | 282 |
| MS.gene044738.t1 | MTR_5g014310 | 40.209 | 383 | 223 | 4 | 2 | 379 | 17 | 398 | 3.12e-89 | 283 |
| MS.gene044738.t1 | MTR_1g115175 | 41.436 | 362 | 202 | 3 | 20 | 379 | 23 | 376 | 3.57e-88 | 279 |
| MS.gene044738.t1 | MTR_7g094770 | 36.923 | 390 | 238 | 4 | 39 | 423 | 53 | 439 | 6.29e-85 | 268 |
| MS.gene044738.t1 | MTR_1g115190 | 40.822 | 365 | 212 | 2 | 18 | 379 | 15 | 378 | 3.24e-81 | 261 |
| MS.gene044738.t1 | MTR_4g098610 | 40.437 | 366 | 213 | 3 | 18 | 379 | 25 | 389 | 1.55e-80 | 259 |
| MS.gene044738.t1 | MTR_8g104130 | 33.435 | 329 | 212 | 6 | 29 | 355 | 47 | 370 | 1.56e-59 | 205 |
| MS.gene044738.t1 | MTR_8g104110 | 32.258 | 341 | 217 | 6 | 27 | 355 | 49 | 387 | 1.07e-58 | 203 |
| MS.gene044738.t1 | MTR_1g111250 | 33.129 | 326 | 206 | 4 | 41 | 357 | 74 | 396 | 3.15e-57 | 198 |
| MS.gene044738.t1 | MTR_6g084680 | 31.507 | 365 | 236 | 5 | 4 | 355 | 44 | 407 | 8.45e-57 | 198 |
| MS.gene044738.t1 | MTR_8g104120 | 32.923 | 325 | 205 | 5 | 41 | 355 | 60 | 381 | 1.19e-51 | 184 |
| MS.gene044738.t1 | MTR_0710s0020 | 47.929 | 169 | 88 | 0 | 18 | 186 | 15 | 183 | 9.29e-40 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044738.t1 | AT2G27240 | 54.195 | 441 | 197 | 3 | 29 | 466 | 1 | 439 | 6.47e-171 | 489 |
| MS.gene044738.t1 | AT1G08440 | 57.614 | 394 | 164 | 1 | 29 | 419 | 1 | 394 | 9.54e-171 | 490 |
| MS.gene044738.t1 | AT2G27240 | 51.178 | 467 | 197 | 4 | 29 | 466 | 1 | 465 | 2.95e-165 | 476 |
| MS.gene044738.t1 | AT1G08430 | 49.666 | 449 | 219 | 3 | 29 | 471 | 1 | 448 | 1.38e-157 | 456 |
| MS.gene044738.t1 | AT3G11680 | 49.342 | 456 | 217 | 7 | 18 | 462 | 15 | 467 | 2.39e-144 | 422 |
| MS.gene044738.t1 | AT3G11680 | 49.342 | 456 | 217 | 7 | 18 | 462 | 13 | 465 | 2.55e-144 | 422 |
| MS.gene044738.t1 | AT4G00910 | 41.043 | 441 | 233 | 3 | 26 | 440 | 43 | 482 | 5.50e-115 | 347 |
| MS.gene044738.t1 | AT4G17970 | 42.105 | 361 | 197 | 2 | 19 | 379 | 28 | 376 | 1.09e-91 | 289 |
| MS.gene044738.t1 | AT5G46600 | 41.899 | 358 | 201 | 2 | 28 | 379 | 29 | 385 | 9.43e-90 | 283 |
| MS.gene044738.t1 | AT5G46610 | 42.398 | 342 | 193 | 2 | 41 | 379 | 41 | 381 | 1.25e-88 | 281 |
| MS.gene044738.t1 | AT5G46610 | 38.596 | 342 | 182 | 3 | 41 | 379 | 41 | 357 | 2.58e-75 | 245 |
| MS.gene044738.t1 | AT5G46610 | 36.257 | 342 | 167 | 3 | 41 | 379 | 41 | 334 | 8.28e-68 | 225 |
| MS.gene044738.t1 | AT3G18440 | 33.939 | 330 | 207 | 4 | 35 | 355 | 73 | 400 | 8.97e-64 | 217 |
| MS.gene044738.t1 | AT2G17470 | 30.137 | 365 | 239 | 6 | 24 | 379 | 18 | 375 | 5.47e-57 | 197 |
| MS.gene044738.t1 | AT1G18420 | 31.672 | 341 | 219 | 6 | 46 | 375 | 5 | 342 | 1.54e-56 | 195 |
| MS.gene044738.t1 | AT1G18420 | 30.919 | 359 | 234 | 6 | 28 | 375 | 70 | 425 | 1.57e-56 | 197 |
| MS.gene044738.t1 | AT2G17470 | 30.137 | 365 | 239 | 6 | 24 | 379 | 40 | 397 | 1.66e-56 | 197 |
| MS.gene044738.t1 | AT1G25480 | 32.184 | 348 | 224 | 5 | 41 | 379 | 59 | 403 | 3.76e-56 | 196 |
| MS.gene044738.t1 | AT1G68600 | 32.615 | 325 | 208 | 4 | 42 | 357 | 49 | 371 | 8.16e-56 | 194 |
| MS.gene044738.t1 | AT4G17585 | 50.000 | 50 | 25 | 0 | 42 | 91 | 40 | 89 | 1.69e-11 | 62.8 |
Find 63 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTGCTTCAATCATGTTTA+TGG | 0.037144 | 4.4:-51234793 | MS.gene044738:CDS |
| CTTGCTTCACTCATAAATTT+TGG | 0.180350 | 4.4:-51234668 | MS.gene044738:CDS |
| CAACCACTTTATGAAAATTT+TGG | 0.182547 | 4.4:-51237387 | MS.gene044738:CDS |
| TGGTTCCCATCTTGCAAAAT+TGG | 0.218158 | 4.4:+51235473 | None:intergenic |
| CATTACTTAGCTAGCTTATC+TGG | 0.224593 | 4.4:-51236564 | MS.gene044738:CDS |
| ACATTTCTGTGCATAGTTCT+TGG | 0.240949 | 4.4:+51234933 | None:intergenic |
| CAGCTGGTGCTTTAGGTGTT+GGG | 0.251786 | 4.4:-51236590 | MS.gene044738:CDS |
| TTCTCTTTAATATCTGTATC+TGG | 0.259432 | 4.4:-51236307 | MS.gene044738:CDS |
| GTGAAATCAAGATATGATTA+TGG | 0.273521 | 4.4:-51236352 | MS.gene044738:CDS |
| ACAGGGGAACCAATTCTAAT+TGG | 0.279623 | 4.4:-51236537 | MS.gene044738:CDS |
| TCATATCTTGATTTCACTTT+GGG | 0.284806 | 4.4:+51236358 | None:intergenic |
| ACATTGGCAGCTGGTGCTTT+AGG | 0.286618 | 4.4:-51236597 | MS.gene044738:CDS |
| GCTTTCTCTTGGTCCATGTT+TGG | 0.290756 | 4.4:+51237585 | None:intergenic |
| GGAGATTGTGACACTTCTTT+AGG | 0.293984 | 4.4:+51234620 | None:intergenic |
| AGTTGGACTTGCAATCTCTT+TGG | 0.318396 | 4.4:-51237430 | MS.gene044738:CDS |
| GCGTTCGCAACGTGAGTTTC+CGG | 0.336235 | 4.4:+51234842 | None:intergenic |
| ACATGTGAGTTCTCAATCTT+AGG | 0.357707 | 4.4:+51234572 | None:intergenic |
| ATACTTGGTGACTTCTTAGA+AGG | 0.366415 | 4.4:-51236136 | MS.gene044738:intron |
| ACAAAGAATCCAATTAGAAT+TGG | 0.373993 | 4.4:+51236528 | None:intergenic |
| CTTTAGGAAAAGGTTTGAAT+AGG | 0.382546 | 4.4:-51236629 | MS.gene044738:CDS |
| ACCTTCTTCATAAGAACCTT+TGG | 0.391062 | 4.4:+51237522 | None:intergenic |
| GCAGCTGGTGCTTTAGGTGT+TGG | 0.391069 | 4.4:-51236591 | MS.gene044738:CDS |
| ATGATTGAAGCAACGAGTTA+AGG | 0.394141 | 4.4:+51234801 | None:intergenic |
| ATCATATCTTGATTTCACTT+TGG | 0.405404 | 4.4:+51236357 | None:intergenic |
| TGAAATCAAGATATGATTAT+GGG | 0.418681 | 4.4:-51236351 | MS.gene044738:CDS |
| TCCAAAGGTTCTTATGAAGA+AGG | 0.419353 | 4.4:-51237523 | MS.gene044738:CDS |
| AGAAGGTGCTATGCATTTGT+AGG | 0.421993 | 4.4:-51237506 | MS.gene044738:CDS |
| TTAGGAGCTACTTTAGGAAA+AGG | 0.426037 | 4.4:-51236639 | MS.gene044738:intron |
| TGGAATCAATACCTTAAAAT+CGG | 0.432673 | 4.4:-51235420 | MS.gene044738:CDS |
| CATGTGTACTAGTTAGAGTA+TGG | 0.433301 | 4.4:-51237563 | MS.gene044738:CDS |
| GTGATTCATTCACTAAAAGT+TGG | 0.434830 | 4.4:-51237447 | MS.gene044738:CDS |
| GCTAGCTTATCTGGAGAGAC+AGG | 0.442104 | 4.4:-51236555 | MS.gene044738:CDS |
| GAGTTCTCAATCTTAGGATC+TGG | 0.455186 | 4.4:+51234578 | None:intergenic |
| GCTATCAAGTTGGAAATACT+TGG | 0.463273 | 4.4:-51236151 | MS.gene044738:CDS |
| AGCTGGTGCTTTAGGTGTTG+GGG | 0.466373 | 4.4:-51236589 | MS.gene044738:CDS |
| AACTCTTCACCAGCCCAAAC+AGG | 0.473547 | 4.4:+51236187 | None:intergenic |
| CTAGTACACATGCTTTCTCT+TGG | 0.478160 | 4.4:+51237574 | None:intergenic |
| TGATGATGAAGTATTACAAA+TGG | 0.486318 | 4.4:-51236278 | MS.gene044738:CDS |
| TTTGTTTGTCCTGTTTGGGC+TGG | 0.492028 | 4.4:-51236196 | MS.gene044738:CDS |
| ATATCGAATGGAAGCTCTAA+AGG | 0.501202 | 4.4:-51235376 | MS.gene044738:CDS |
| GGCAGTGATGACTGTGGTGG+TGG | 0.502115 | 4.4:-51237349 | MS.gene044738:CDS |
| GGATTCTTTGTATTTCTACA+AGG | 0.514172 | 4.4:-51236516 | MS.gene044738:intron |
| TGATTCAATTGCTATCAAGT+TGG | 0.515098 | 4.4:-51236161 | MS.gene044738:CDS |
| CAATATGGTGTCTCCAAACA+TGG | 0.518606 | 4.4:-51237598 | None:intergenic |
| TAAAAGCAATGACGAGTCAC+TGG | 0.525834 | 4.4:-51235593 | MS.gene044738:intron |
| AATTTGAACTTGCCATGACC+TGG | 0.528501 | 4.4:+51235453 | None:intergenic |
| GAATAGGACAATGGCAACAT+TGG | 0.531378 | 4.4:-51236613 | MS.gene044738:CDS |
| AGTTCAAATTTCGTCACCCA+TGG | 0.543985 | 4.4:-51235440 | MS.gene044738:CDS |
| GCAAGATGGGAACCAGGTCA+TGG | 0.553785 | 4.4:-51235465 | MS.gene044738:CDS |
| AATGAAGCAACTGTCACAGC+TGG | 0.554014 | 4.4:+51234743 | None:intergenic |
| GGTTCAGCACATTCACATGT+TGG | 0.558533 | 4.4:+51234599 | None:intergenic |
| TCGTCAATGTGCATATCGAA+TGG | 0.577376 | 4.4:-51235388 | MS.gene044738:CDS |
| ACAATGGCAACATTGGCAGC+TGG | 0.586205 | 4.4:-51236606 | MS.gene044738:CDS |
| CTAGCTTATCTGGAGAGACA+GGG | 0.602432 | 4.4:-51236554 | MS.gene044738:CDS |
| AATGACAAGAAACTCATCAC+CGG | 0.615723 | 4.4:-51234861 | MS.gene044738:CDS |
| AAAAGGTTTGAATAGGACAA+TGG | 0.617027 | 4.4:-51236622 | MS.gene044738:CDS |
| AATGTGTTTAGAATCAAGCA+TGG | 0.622652 | 4.4:-51234915 | MS.gene044738:CDS |
| TGAGTACTTTAAAACAACAA+AGG | 0.649926 | 4.4:-51235674 | MS.gene044738:CDS |
| TAGCTTATCTGGAGAGACAG+GGG | 0.664930 | 4.4:-51236553 | MS.gene044738:CDS |
| GTGGGCAGTGATGACTGTGG+TGG | 0.678035 | 4.4:-51237352 | MS.gene044738:CDS |
| TAAGATTGAGAACTCACATG+TGG | 0.703897 | 4.4:-51234570 | MS.gene044738:CDS |
| TGATATTGTTGATTGCACTG+AGG | 0.767820 | 4.4:-51234714 | MS.gene044738:CDS |
| AATGTGGGCAGTGATGACTG+TGG | 0.817988 | 4.4:-51237355 | MS.gene044738:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATAAATATTTTTTA+TGG | + | chr4.4:51235007-51235026 | None:intergenic | 0.0% |
| !! | TTAGATGAAATTTAATAATT+AGG | + | chr4.4:51236200-51236219 | None:intergenic | 10.0% |
| !!! | ATTAATTGTGTAAATTTTAA+TGG | + | chr4.4:51236282-51236301 | None:intergenic | 10.0% |
| !!! | CATAATGTTTTTATTATTTT+TGG | - | chr4.4:51235699-51235718 | MS.gene044738:intron | 10.0% |
| !!! | TATATCAATTTAATTTTTGA+GGG | + | chr4.4:51235243-51235262 | None:intergenic | 10.0% |
| !!! | TCTTTATTATTACATATTTT+TGG | + | chr4.4:51235645-51235664 | None:intergenic | 10.0% |
| !!! | TTATATCAATTTAATTTTTG+AGG | + | chr4.4:51235244-51235263 | None:intergenic | 10.0% |
| !!! | TTTTATCTTTACTTTATTAT+AGG | - | chr4.4:51236621-51236640 | MS.gene044738:CDS | 10.0% |
| !! | CAAAGATCTAAATTTAATTA+GGG | + | chr4.4:51237063-51237082 | None:intergenic | 15.0% |
| !! | TATAACAAGTATATTTCATT+TGG | - | chr4.4:51235027-51235046 | MS.gene044738:intron | 15.0% |
| !! | TTTACTATACCAAAAATAAT+AGG | - | chr4.4:51236051-51236070 | MS.gene044738:intron | 15.0% |
| !!! | AAATGAATATTTTGGATTTA+TGG | + | chr4.4:51236804-51236823 | None:intergenic | 15.0% |
| !!! | ATATGAGAAGATTTTATTTA+TGG | - | chr4.4:51236583-51236602 | MS.gene044738:CDS | 15.0% |
| !!! | ATTTTTTATGGAAAACAAAA+GGG | + | chr4.4:51234995-51235014 | None:intergenic | 15.0% |
| !!! | GACTTTATAAATGAATATTT+TGG | + | chr4.4:51236812-51236831 | None:intergenic | 15.0% |
| !!! | TATAAATATTTTGTGTTGAT+CGG | - | chr4.4:51235286-51235305 | MS.gene044738:intron | 15.0% |
| !!! | TATTTTTTATGGAAAACAAA+AGG | + | chr4.4:51234996-51235015 | None:intergenic | 15.0% |
| !!! | TTAATCTTTTTTTTTTCCAA+CGG | + | chr4.4:51235119-51235138 | None:intergenic | 15.0% |
| !!! | TTTTTTTCAAAATCAAACTA+AGG | - | chr4.4:51234891-51234910 | MS.gene044738:CDS | 15.0% |
| !! | AAAAGATTAAAAGAGAACTA+AGG | - | chr4.4:51235129-51235148 | MS.gene044738:intron | 20.0% |
| !! | CATTTACTAATTGTAATAAG+TGG | + | chr4.4:51236233-51236252 | None:intergenic | 20.0% |
| !! | GCAAAGATCTAAATTTAATT+AGG | + | chr4.4:51237064-51237083 | None:intergenic | 20.0% |
| !! | TGAAATCAAGATATGATTAT+GGG | - | chr4.4:51235766-51235785 | MS.gene044738:intron | 20.0% |
| !! | TTTATCTTAGATCATTTCAA+TGG | - | chr4.4:51235051-51235070 | MS.gene044738:intron | 20.0% |
| !!! | ATATAGTATGTCACATTTTT+AGG | - | chr4.4:51235460-51235479 | MS.gene044738:CDS | 20.0% |
| !!! | TTTTTGTTGTATCTTATGTA+GGG | - | chr4.4:51237137-51237156 | MS.gene044738:intron | 20.0% |
| !!! | TTTTTTGTTGTATCTTATGT+AGG | - | chr4.4:51237136-51237155 | MS.gene044738:intron | 20.0% |
| ! | AAAAACCAATATATCCATTG+AGG | - | chr4.4:51235385-51235404 | MS.gene044738:CDS | 25.0% |
| ! | ACAAAGAATCCAATTAGAAT+TGG | + | chr4.4:51235592-51235611 | None:intergenic | 25.0% |
| ! | ATACCAAAAATAATAGGTCA+TGG | - | chr4.4:51236057-51236076 | MS.gene044738:intron | 25.0% |
| ! | ATCATATCTTGATTTCACTT+TGG | + | chr4.4:51235763-51235782 | None:intergenic | 25.0% |
| ! | ATGGTATATGATGTATACTT+TGG | + | chr4.4:51236785-51236804 | None:intergenic | 25.0% |
| ! | GATAAAAAGACATTTCTTGA+AGG | - | chr4.4:51236480-51236499 | MS.gene044738:intron | 25.0% |
| ! | GTGAAATCAAGATATGATTA+TGG | - | chr4.4:51235765-51235784 | MS.gene044738:intron | 25.0% |
| ! | TCATATCTTGATTTCACTTT+GGG | + | chr4.4:51235762-51235781 | None:intergenic | 25.0% |
| ! | TGGAATCAATACCTTAAAAT+CGG | - | chr4.4:51236697-51236716 | MS.gene044738:intron | 25.0% |
| ! | TTCTCTTTAATATCTGTATC+TGG | - | chr4.4:51235810-51235829 | MS.gene044738:intron | 25.0% |
| ! | TTGTACTATTGTGTAGAATA+TGG | + | chr4.4:51234843-51234862 | None:intergenic | 25.0% |
| !! | AGACCAAAATTTTCATAAAG+TGG | + | chr4.4:51234736-51234755 | None:intergenic | 25.0% |
| !! | CAACCACTTTATGAAAATTT+TGG | - | chr4.4:51234730-51234749 | MS.gene044738:CDS | 25.0% |
| !! | CTCAAAATAATTGTCGTTTA+AGG | + | chr4.4:51236330-51236349 | None:intergenic | 25.0% |
| !! | TGATGATGAAGTATTACAAA+TGG | - | chr4.4:51235839-51235858 | MS.gene044738:intron | 25.0% |
| !! | TGTCTAGTTTGGATTATTTA+TGG | + | chr4.4:51237023-51237042 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGTATTGATTCCA+TGG | + | chr4.4:51236697-51236716 | None:intergenic | 25.0% |
| !!! | CTTAAACGACAATTATTTTG+AGG | - | chr4.4:51236328-51236347 | MS.gene044738:CDS | 25.0% |
| !!! | TATTTTTTTGCAGCATTTGT+AGG | - | chr4.4:51236420-51236439 | MS.gene044738:intron | 25.0% |
| !!! | TGAGTACTTTAAAACAACAA+AGG | - | chr4.4:51236443-51236462 | MS.gene044738:intron | 25.0% |
| !!! | TTTTAAGGTATTGATTCCAT+GGG | + | chr4.4:51236696-51236715 | None:intergenic | 25.0% |
| AAAAGGTTTGAATAGGACAA+TGG | - | chr4.4:51235495-51235514 | MS.gene044738:intron | 30.0% | |
| GTGATTCATTCACTAAAAGT+TGG | - | chr4.4:51234670-51234689 | MS.gene044738:CDS | 30.0% | |
| TGATTCAATTGCTATCAAGT+TGG | - | chr4.4:51235956-51235975 | MS.gene044738:intron | 30.0% | |
| ! | AATGTGTTTAGAATCAAGCA+TGG | - | chr4.4:51237202-51237221 | MS.gene044738:intron | 30.0% |
| ! | ATAATTTTCTTGCATTCACG+TGG | + | chr4.4:51236998-51237017 | None:intergenic | 30.0% |
| ! | CATCCATGACCTATTATTTT+TGG | + | chr4.4:51236063-51236082 | None:intergenic | 30.0% |
| ! | CTGCTATAGCATCTTTTATA+AGG | - | chr4.4:51235730-51235749 | MS.gene044738:intron | 30.0% |
| ! | CTTGCTTCACTCATAAATTT+TGG | - | chr4.4:51237449-51237468 | MS.gene044738:CDS | 30.0% |
| ! | CTTTAGGAAAAGGTTTGAAT+AGG | - | chr4.4:51235488-51235507 | MS.gene044738:intron | 30.0% |
| ! | GCAAATAAAAGCTTTTCCAA+AGG | - | chr4.4:51234579-51234598 | MS.gene044738:CDS | 30.0% |
| ! | GGATTCTTTGTATTTCTACA+AGG | - | chr4.4:51235601-51235620 | MS.gene044738:CDS | 30.0% |
| !! | ACATTTTTAGGAGCTACTTT+AGG | - | chr4.4:51235472-51235491 | MS.gene044738:CDS | 30.0% |
| !! | AGATTATCCACCATTTTTCT+TGG | - | chr4.4:51235870-51235889 | MS.gene044738:intron | 30.0% |
| !! | AGTGAATGAATCACTTTTCT+TGG | + | chr4.4:51234664-51234683 | None:intergenic | 30.0% |
| !! | CATTTTTGTTTGTCCTGTTT+GGG | - | chr4.4:51235917-51235936 | MS.gene044738:intron | 30.0% |
| !! | GTGAATGAATCACTTTTCTT+GGG | + | chr4.4:51234663-51234682 | None:intergenic | 30.0% |
| !!! | AAACGACAATTATTTTGAGG+TGG | - | chr4.4:51236331-51236350 | MS.gene044738:CDS | 30.0% |
| !!! | ATCTTTTTTTTTTCCAACGG+AGG | + | chr4.4:51235116-51235135 | None:intergenic | 30.0% |
| AATCAAACTAAGGCATGTCT+CGG | - | chr4.4:51234901-51234920 | MS.gene044738:CDS | 35.0% | |
| AATGACAAGAAACTCATCAC+CGG | - | chr4.4:51237256-51237275 | MS.gene044738:intron | 35.0% | |
| ACATGTGAGTTCTCAATCTT+AGG | + | chr4.4:51237548-51237567 | None:intergenic | 35.0% | |
| ACATTTCTGTGCATAGTTCT+TGG | + | chr4.4:51237187-51237206 | None:intergenic | 35.0% | |
| ACCTTCTTCATAAGAACCTT+TGG | + | chr4.4:51234598-51234617 | None:intergenic | 35.0% | |
| AGCATCCTCAATGGATATAT+TGG | + | chr4.4:51235393-51235412 | None:intergenic | 35.0% | |
| AGTCTTAGTTTCGTAAGACA+TGG | - | chr4.4:51235077-51235096 | MS.gene044738:intron | 35.0% | |
| ATGATTGAAGCAACGAGTTA+AGG | + | chr4.4:51237319-51237338 | None:intergenic | 35.0% | |
| ATGGAAATTATGACCACAGA+CGG | + | chr4.4:51236856-51236875 | None:intergenic | 35.0% | |
| CATGTGTACTAGTTAGAGTA+TGG | - | chr4.4:51234554-51234573 | MS.gene044738:CDS | 35.0% | |
| CCAAACAGGACAAACAAAAA+TGG | + | chr4.4:51235919-51235938 | None:intergenic | 35.0% | |
| CGTTGCTTCAATCATGTTTA+TGG | - | chr4.4:51237324-51237343 | MS.gene044738:intron | 35.0% | |
| CTTAGACTATGTGTCTAGTT+TGG | + | chr4.4:51237034-51237053 | None:intergenic | 35.0% | |
| CTTTAAATTTAGACCGTCTG+TGG | - | chr4.4:51236840-51236859 | MS.gene044738:intron | 35.0% | |
| TAAGATTGAGAACTCACATG+TGG | - | chr4.4:51237547-51237566 | MS.gene044738:CDS | 35.0% | |
| TCCAAAGGTTCTTATGAAGA+AGG | - | chr4.4:51234594-51234613 | MS.gene044738:CDS | 35.0% | |
| ! | ATACTTGGTGACTTCTTAGA+AGG | - | chr4.4:51235981-51236000 | MS.gene044738:intron | 35.0% |
| ! | ATAGGCCAATTTTGCAAGAT+GGG | - | chr4.4:51236639-51236658 | MS.gene044738:intron | 35.0% |
| ! | ATATCGAATGGAAGCTCTAA+AGG | - | chr4.4:51236741-51236760 | MS.gene044738:intron | 35.0% |
| ! | CATTACTTAGCTAGCTTATC+TGG | - | chr4.4:51235553-51235572 | MS.gene044738:intron | 35.0% |
| ! | TATAGGCCAATTTTGCAAGA+TGG | - | chr4.4:51236638-51236657 | MS.gene044738:CDS | 35.0% |
| ! | TGATATTGTTGATTGCACTG+AGG | - | chr4.4:51237403-51237422 | MS.gene044738:CDS | 35.0% |
| ! | TTAGGAGCTACTTTAGGAAA+AGG | - | chr4.4:51235478-51235497 | MS.gene044738:intron | 35.0% |
| !! | ATTACTAAGAGCATCCTCAA+TGG | + | chr4.4:51235402-51235421 | None:intergenic | 35.0% |
| !! | ATTTTGGTCTTTCAGCAATG+TGG | - | chr4.4:51234746-51234765 | MS.gene044738:CDS | 35.0% |
| !! | CCATTTTTGTTTGTCCTGTT+TGG | - | chr4.4:51235916-51235935 | MS.gene044738:intron | 35.0% |
| !! | GCTATCAAGTTGGAAATACT+TGG | - | chr4.4:51235966-51235985 | MS.gene044738:intron | 35.0% |
| !! | TTATCCACCATTTTTCTTGG+AGG | - | chr4.4:51235873-51235892 | MS.gene044738:intron | 35.0% |
| !! | TTTTGGTCTTTCAGCAATGT+GGG | - | chr4.4:51234747-51234766 | MS.gene044738:CDS | 35.0% |
| AAAAGGGCAGCTTAGAGTAT+AGG | + | chr4.4:51234979-51234998 | None:intergenic | 40.0% | |
| AATTTGAACTTGCCATGACC+TGG | + | chr4.4:51236667-51236686 | None:intergenic | 40.0% | |
| ACAGGGGAACCAATTCTAAT+TGG | - | chr4.4:51235580-51235599 | MS.gene044738:intron | 40.0% | |
| AGAACCTCCAAGAAAAATGG+TGG | + | chr4.4:51235880-51235899 | None:intergenic | 40.0% | |
| AGCAGAACCTCCAAGAAAAA+TGG | + | chr4.4:51235883-51235902 | None:intergenic | 40.0% | |
| AGTTCAAATTTCGTCACCCA+TGG | - | chr4.4:51236677-51236696 | MS.gene044738:intron | 40.0% | |
| AGTTGGACTTGCAATCTCTT+TGG | - | chr4.4:51234687-51234706 | MS.gene044738:CDS | 40.0% | |
| CTAGTACACATGCTTTCTCT+TGG | + | chr4.4:51234546-51234565 | None:intergenic | 40.0% | |
| GAATAGGACAATGGCAACAT+TGG | - | chr4.4:51235504-51235523 | MS.gene044738:intron | 40.0% | |
| GAGTTCTCAATCTTAGGATC+TGG | + | chr4.4:51237542-51237561 | None:intergenic | 40.0% | |
| GGAGATTGTGACACTTCTTT+AGG | + | chr4.4:51237500-51237519 | None:intergenic | 40.0% | |
| TAAAAGCAATGACGAGTCAC+TGG | - | chr4.4:51236524-51236543 | MS.gene044738:CDS | 40.0% | |
| TACCTAATAGATACCTCCGT+TGG | - | chr4.4:51235100-51235119 | MS.gene044738:intron | 40.0% | |
| TCGTCAATGTGCATATCGAA+TGG | - | chr4.4:51236729-51236748 | MS.gene044738:intron | 40.0% | |
| TGGTTCCCATCTTGCAAAAT+TGG | + | chr4.4:51236647-51236666 | None:intergenic | 40.0% | |
| TTGCATTCACGTGGTATAAG+TGG | + | chr4.4:51236989-51237008 | None:intergenic | 40.0% | |
| ! | AATTTTGCAAGATGGGAACC+AGG | - | chr4.4:51236646-51236665 | MS.gene044738:intron | 40.0% |
| ! | ACTATGAGCTACTGATTGCA+TGG | + | chr4.4:51236875-51236894 | None:intergenic | 40.0% |
| !! | AGAAGGTGCTATGCATTTGT+AGG | - | chr4.4:51234611-51234630 | MS.gene044738:CDS | 40.0% |
| !! | TTCCAACGGAGGTATCTATT+AGG | + | chr4.4:51235105-51235124 | None:intergenic | 40.0% |
| !!! | GAGAAAGTGCACCGATTTTA+AGG | + | chr4.4:51236711-51236730 | None:intergenic | 40.0% |
| !!! | GTGGTTTTTGAGTACACAGT+TGG | - | chr4.4:51234787-51234806 | MS.gene044738:CDS | 40.0% |
| AATGAAGCAACTGTCACAGC+TGG | + | chr4.4:51237377-51237396 | None:intergenic | 45.0% | |
| CATTCACGTGGTATAAGTGG+TGG | + | chr4.4:51236986-51237005 | None:intergenic | 45.0% | |
| CTAGCTTATCTGGAGAGACA+GGG | - | chr4.4:51235563-51235582 | MS.gene044738:intron | 45.0% | |
| GCTTTCTCTTGGTCCATGTT+TGG | + | chr4.4:51234535-51234554 | None:intergenic | 45.0% | |
| GGTAAGTAACTCAGAGTCGT+TGG | + | chr4.4:51236965-51236984 | None:intergenic | 45.0% | |
| GGTTCAGCACATTCACATGT+TGG | + | chr4.4:51237521-51237540 | None:intergenic | 45.0% | |
| TAGCTTATCTGGAGAGACAG+GGG | - | chr4.4:51235564-51235583 | MS.gene044738:intron | 45.0% | |
| TTAGAGTATAGGCATCCACC+AGG | + | chr4.4:51234968-51234987 | None:intergenic | 45.0% | |
| TTTGTTTGTCCTGTTTGGGC+TGG | - | chr4.4:51235921-51235940 | MS.gene044738:intron | 45.0% | |
| AACTCTTCACCAGCCCAAAC+AGG | + | chr4.4:51235933-51235952 | None:intergenic | 50.0% | |
| AAGCAATGACGAGTCACTGG+TGG | - | chr4.4:51236527-51236546 | MS.gene044738:CDS | 50.0% | |
| AATGTGGGCAGTGATGACTG+TGG | - | chr4.4:51234762-51234781 | MS.gene044738:CDS | 50.0% | |
| ACAATGGCAACATTGGCAGC+TGG | - | chr4.4:51235511-51235530 | MS.gene044738:intron | 50.0% | |
| ACATTGGCAGCTGGTGCTTT+AGG | - | chr4.4:51235520-51235539 | MS.gene044738:intron | 50.0% | |
| AGCAATGACGAGTCACTGGT+GGG | - | chr4.4:51236528-51236547 | MS.gene044738:CDS | 50.0% | |
| AGTATAGGCATCCACCAGGT+GGG | + | chr4.4:51234964-51234983 | None:intergenic | 50.0% | |
| ! | AAGGCATGTCTCGGTGCAAA+CGG | - | chr4.4:51234910-51234929 | MS.gene044738:CDS | 50.0% |
| ! | AGCTGGTGCTTTAGGTGTTG+GGG | - | chr4.4:51235528-51235547 | MS.gene044738:intron | 50.0% |
| ! | CAGCTGGTGCTTTAGGTGTT+GGG | - | chr4.4:51235527-51235546 | MS.gene044738:intron | 50.0% |
| ! | GCTAGCTTATCTGGAGAGAC+AGG | - | chr4.4:51235562-51235581 | MS.gene044738:intron | 50.0% |
| GAGTATAGGCATCCACCAGG+TGG | + | chr4.4:51234965-51234984 | None:intergenic | 55.0% | |
| GCAAGATGGGAACCAGGTCA+TGG | - | chr4.4:51236652-51236671 | MS.gene044738:intron | 55.0% | |
| GCGTTCGCAACGTGAGTTTC+CGG | + | chr4.4:51237278-51237297 | None:intergenic | 55.0% | |
| ! | ACCAGGTGGGAGCATGGAAA+GGG | + | chr4.4:51234951-51234970 | None:intergenic | 55.0% |
| ! | GCAGCTGGTGCTTTAGGTGT+TGG | - | chr4.4:51235526-51235545 | MS.gene044738:intron | 55.0% |
| ACCCTTTCCATGCTCCCACC+TGG | - | chr4.4:51234947-51234966 | MS.gene044738:CDS | 60.0% | |
| CTTTCCATGCTCCCACCTGG+TGG | - | chr4.4:51234950-51234969 | MS.gene044738:CDS | 60.0% | |
| GGCAGTGATGACTGTGGTGG+TGG | - | chr4.4:51234768-51234787 | MS.gene044738:CDS | 60.0% | |
| GTGGGCAGTGATGACTGTGG+TGG | - | chr4.4:51234765-51234784 | MS.gene044738:CDS | 60.0% | |
| ! | CACCAGGTGGGAGCATGGAA+AGG | + | chr4.4:51234952-51234971 | None:intergenic | 60.0% |
| ! | GCATGTCTCGGTGCAAACGG+TGG | - | chr4.4:51234913-51234932 | MS.gene044738:CDS | 60.0% |
| GCATCCACCAGGTGGGAGCA+TGG | + | chr4.4:51234957-51234976 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 51234523 | 51237616 | 51234523 | ID=MS.gene044738 |
| chr4.4 | mRNA | 51234523 | 51237616 | 51234523 | ID=MS.gene044738.t1;Parent=MS.gene044738 |
| chr4.4 | exon | 51237331 | 51237616 | 51237331 | ID=MS.gene044738.t1.exon1;Parent=MS.gene044738.t1 |
| chr4.4 | CDS | 51237331 | 51237616 | 51237331 | ID=cds.MS.gene044738.t1;Parent=MS.gene044738.t1 |
| chr4.4 | exon | 51236517 | 51236657 | 51236517 | ID=MS.gene044738.t1.exon2;Parent=MS.gene044738.t1 |
| chr4.4 | CDS | 51236517 | 51236657 | 51236517 | ID=cds.MS.gene044738.t1;Parent=MS.gene044738.t1 |
| chr4.4 | exon | 51236137 | 51236409 | 51236137 | ID=MS.gene044738.t1.exon3;Parent=MS.gene044738.t1 |
| chr4.4 | CDS | 51236137 | 51236409 | 51236137 | ID=cds.MS.gene044738.t1;Parent=MS.gene044738.t1 |
| chr4.4 | exon | 51235594 | 51235706 | 51235594 | ID=MS.gene044738.t1.exon4;Parent=MS.gene044738.t1 |
| chr4.4 | CDS | 51235594 | 51235706 | 51235594 | ID=cds.MS.gene044738.t1;Parent=MS.gene044738.t1 |
| chr4.4 | exon | 51235353 | 51235496 | 51235353 | ID=MS.gene044738.t1.exon5;Parent=MS.gene044738.t1 |
| chr4.4 | CDS | 51235353 | 51235496 | 51235353 | ID=cds.MS.gene044738.t1;Parent=MS.gene044738.t1 |
| chr4.4 | exon | 51234523 | 51234981 | 51234523 | ID=MS.gene044738.t1.exon6;Parent=MS.gene044738.t1 |
| chr4.4 | CDS | 51234523 | 51234981 | 51234523 | ID=cds.MS.gene044738.t1;Parent=MS.gene044738.t1 |
| Gene Sequence |
| Protein sequence |
