Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004961.t1 | XP_013468854.1 | 87.8 | 484 | 57 | 2 | 1 | 482 | 1 | 484 | 2.20E-230 | 808.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004961.t1 | O23086 | 48.0 | 477 | 213 | 7 | 11 | 453 | 8 | 483 | 1.6e-117 | 424.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004961.t1 | A0A072VMR8 | 87.8 | 484 | 57 | 2 | 1 | 482 | 1 | 484 | 1.6e-230 | 808.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004961 | MS.gene61659 | PPI |
| MS.gene004961 | MS.gene96117 | PPI |
| MS.gene004961 | MS.gene66665 | PPI |
| MS.gene004961 | MS.gene044738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004961.t1 | MTR_1g077670 | 94.835 | 484 | 23 | 2 | 1 | 482 | 1 | 484 | 0.0 | 947 |
| MS.gene004961.t1 | MTR_1g077660 | 80.211 | 475 | 87 | 4 | 10 | 482 | 4 | 473 | 0.0 | 778 |
| MS.gene004961.t1 | MTR_7g106260 | 45.287 | 435 | 216 | 3 | 52 | 479 | 42 | 461 | 1.75e-119 | 358 |
| MS.gene004961.t1 | MTR_2g087288 | 42.410 | 415 | 215 | 5 | 52 | 460 | 37 | 433 | 1.47e-113 | 342 |
| MS.gene004961.t1 | MTR_4g051575 | 43.489 | 407 | 195 | 4 | 52 | 447 | 41 | 423 | 2.82e-112 | 340 |
| MS.gene004961.t1 | MTR_1g115140 | 39.848 | 394 | 216 | 6 | 35 | 408 | 20 | 412 | 5.66e-97 | 303 |
| MS.gene004961.t1 | MTR_1g115175 | 43.103 | 348 | 187 | 5 | 48 | 388 | 33 | 376 | 6.77e-94 | 295 |
| MS.gene004961.t1 | MTR_2g087285 | 39.336 | 422 | 224 | 6 | 41 | 447 | 15 | 419 | 4.33e-92 | 287 |
| MS.gene004961.t1 | MTR_4g098570 | 35.152 | 495 | 255 | 10 | 44 | 473 | 41 | 534 | 8.10e-89 | 281 |
| MS.gene004961.t1 | MTR_1g115190 | 41.808 | 354 | 197 | 5 | 42 | 388 | 27 | 378 | 1.33e-87 | 278 |
| MS.gene004961.t1 | MTR_5g014310 | 41.499 | 347 | 196 | 3 | 48 | 388 | 53 | 398 | 6.45e-87 | 277 |
| MS.gene004961.t1 | MTR_4g098610 | 34.792 | 480 | 248 | 7 | 44 | 458 | 41 | 520 | 8.34e-81 | 260 |
| MS.gene004961.t1 | MTR_7g094770 | 36.500 | 400 | 230 | 6 | 56 | 449 | 60 | 441 | 1.70e-80 | 257 |
| MS.gene004961.t1 | MTR_8g104110 | 35.967 | 367 | 213 | 8 | 42 | 389 | 50 | 413 | 3.74e-70 | 234 |
| MS.gene004961.t1 | MTR_6g084680 | 35.171 | 381 | 230 | 6 | 19 | 384 | 48 | 426 | 3.09e-68 | 229 |
| MS.gene004961.t1 | MTR_4g051575 | 39.355 | 310 | 152 | 5 | 150 | 447 | 4 | 289 | 2.68e-67 | 219 |
| MS.gene004961.t1 | MTR_8g104130 | 36.499 | 337 | 208 | 6 | 49 | 383 | 56 | 388 | 3.00e-65 | 221 |
| MS.gene004961.t1 | MTR_1g111250 | 33.148 | 359 | 225 | 5 | 43 | 390 | 65 | 419 | 3.72e-63 | 214 |
| MS.gene004961.t1 | MTR_8g104120 | 34.551 | 356 | 215 | 7 | 48 | 389 | 56 | 407 | 2.15e-61 | 210 |
| MS.gene004961.t1 | MTR_0710s0020 | 50.318 | 157 | 77 | 1 | 42 | 197 | 27 | 183 | 6.17e-43 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004961.t1 | AT4G00910 | 48.842 | 475 | 217 | 7 | 1 | 453 | 1 | 471 | 1.17e-159 | 461 |
| MS.gene004961.t1 | AT1G08440 | 43.276 | 409 | 212 | 3 | 42 | 445 | 3 | 396 | 3.98e-117 | 353 |
| MS.gene004961.t1 | AT1G08430 | 40.757 | 449 | 240 | 5 | 42 | 479 | 3 | 436 | 1.79e-114 | 346 |
| MS.gene004961.t1 | AT2G27240 | 40.964 | 415 | 225 | 3 | 42 | 451 | 3 | 402 | 5.92e-112 | 339 |
| MS.gene004961.t1 | AT3G11680 | 44.737 | 418 | 198 | 5 | 45 | 452 | 29 | 423 | 1.22e-109 | 334 |
| MS.gene004961.t1 | AT3G11680 | 45.169 | 414 | 194 | 5 | 45 | 448 | 31 | 421 | 1.41e-109 | 333 |
| MS.gene004961.t1 | AT2G27240 | 38.776 | 441 | 224 | 3 | 42 | 451 | 3 | 428 | 2.97e-109 | 333 |
| MS.gene004961.t1 | AT4G17970 | 39.617 | 366 | 212 | 3 | 42 | 399 | 29 | 393 | 1.62e-93 | 294 |
| MS.gene004961.t1 | AT5G46600 | 38.095 | 399 | 224 | 5 | 10 | 394 | 8 | 397 | 1.60e-91 | 288 |
| MS.gene004961.t1 | AT5G46610 | 37.989 | 358 | 216 | 3 | 36 | 388 | 25 | 381 | 9.46e-88 | 279 |
| MS.gene004961.t1 | AT5G46610 | 34.637 | 358 | 204 | 4 | 36 | 388 | 25 | 357 | 2.67e-74 | 243 |
| MS.gene004961.t1 | AT3G18440 | 35.584 | 385 | 225 | 9 | 24 | 389 | 46 | 426 | 1.12e-70 | 236 |
| MS.gene004961.t1 | AT1G18420 | 33.929 | 392 | 237 | 7 | 30 | 404 | 58 | 444 | 2.16e-68 | 229 |
| MS.gene004961.t1 | AT1G18420 | 33.607 | 366 | 224 | 6 | 53 | 404 | 1 | 361 | 8.48e-65 | 218 |
| MS.gene004961.t1 | AT5G46610 | 32.682 | 358 | 188 | 4 | 36 | 388 | 25 | 334 | 6.82e-64 | 215 |
| MS.gene004961.t1 | AT1G68600 | 35.211 | 355 | 214 | 8 | 49 | 390 | 45 | 396 | 1.46e-62 | 213 |
| MS.gene004961.t1 | AT2G17470 | 33.903 | 351 | 216 | 8 | 52 | 390 | 31 | 377 | 1.97e-60 | 207 |
| MS.gene004961.t1 | AT1G25480 | 35.028 | 354 | 214 | 8 | 49 | 390 | 56 | 405 | 2.34e-60 | 207 |
| MS.gene004961.t1 | AT2G17470 | 33.903 | 351 | 216 | 8 | 52 | 390 | 53 | 399 | 3.30e-60 | 207 |
| MS.gene004961.t1 | AT4G17585 | 50.000 | 76 | 35 | 2 | 42 | 114 | 29 | 104 | 8.42e-16 | 75.1 |
Find 83 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTGAATTACTTCCATTAT+TGG | 0.173527 | 1.4:-63650396 | None:intergenic |
| TTCAGTTTGGTTTCAATATC+TGG | 0.191656 | 1.4:+63649301 | MS.gene004961:CDS |
| AAAATTCATCCATTGTTTAA+AGG | 0.225366 | 1.4:+63648296 | MS.gene004961:CDS |
| AGGATTTCTACTATTATAAT+TGG | 0.227233 | 1.4:+63649361 | MS.gene004961:CDS |
| GAGCAGGACTCCAACAATTA+TGG | 0.249770 | 1.4:-63649073 | None:intergenic |
| GGCAAGTTTGTCGAGGTTTC+CGG | 0.250712 | 1.4:-63649458 | None:intergenic |
| GTCAAATAAACTTGATAGTT+TGG | 0.252810 | 1.4:+63650260 | MS.gene004961:CDS |
| TGGAAGCAATATCTTAAAAT+TGG | 0.256872 | 1.4:+63649904 | MS.gene004961:CDS |
| GCATGATTATTCGACCTGTT+TGG | 0.287777 | 1.4:+63649407 | MS.gene004961:CDS |
| AATTGATGAATTGTTTGATA+TGG | 0.306438 | 1.4:+63649330 | MS.gene004961:CDS |
| CTTGAATTACTTCCATTATT+GGG | 0.307049 | 1.4:-63650395 | None:intergenic |
| CATGATTATTCGACCTGTTT+GGG | 0.318706 | 1.4:+63649408 | MS.gene004961:CDS |
| CATTGATACTTCTGTTGCTT+TGG | 0.318862 | 1.4:-63649726 | None:intergenic |
| TCATGTATTGATGCTCTTGT+TGG | 0.334317 | 1.4:+63649949 | MS.gene004961:CDS |
| TCCTAATTATTCAAACAATC+TGG | 0.338602 | 1.4:-63650605 | None:intergenic |
| CGACAAACTTGCCAACTCTA+TGG | 0.342563 | 1.4:+63649468 | MS.gene004961:CDS |
| GTTGCTTCCTCATGCTGGTC+TGG | 0.347155 | 1.4:-63650570 | None:intergenic |
| TTGAAACCAAACTGAAAGTT+AGG | 0.352951 | 1.4:-63649294 | None:intergenic |
| ATTTATCCTAACTTTCAGTT+TGG | 0.375111 | 1.4:+63649288 | MS.gene004961:CDS |
| CTTGCCGGATTTCTAGCCTT+TGG | 0.385282 | 1.4:+63649009 | MS.gene004961:CDS |
| ATATGTGGAACTACCCTTGC+CGG | 0.395243 | 1.4:+63648994 | MS.gene004961:CDS |
| TTCTAGCCTTTGGCGTACAT+TGG | 0.406843 | 1.4:+63649019 | MS.gene004961:CDS |
| GGAGTCCTGCTCTTTCTACT+AGG | 0.409608 | 1.4:+63649084 | MS.gene004961:CDS |
| TGATTGTTGCTTCCTCATGC+TGG | 0.420856 | 1.4:-63650575 | None:intergenic |
| AGCAGGACTCCAACAATTAT+GGG | 0.421556 | 1.4:-63649072 | None:intergenic |
| TACTTGAATCCTTTGTATGA+TGG | 0.432772 | 1.4:+63648354 | MS.gene004961:CDS |
| TTCAGGCTAATTTAGCAAGA+TGG | 0.439855 | 1.4:+63649845 | MS.gene004961:intron |
| TTGAAGAAAGCTTGGGAGGT+GGG | 0.442474 | 1.4:+63648258 | MS.gene004961:CDS |
| TCTAGCCTTTGGCGTACATT+GGG | 0.446032 | 1.4:+63649020 | MS.gene004961:CDS |
| CAATTGGAACCCATAATTGT+TGG | 0.452675 | 1.4:+63649063 | MS.gene004961:CDS |
| TCAGGCTAATTTAGCAAGAT+GGG | 0.465820 | 1.4:+63649846 | MS.gene004961:intron |
| TACGCCAAAGGCTAGAAATC+CGG | 0.482915 | 1.4:-63649013 | None:intergenic |
| GAGCGGTAAAAGAAGTAGAA+TGG | 0.483895 | 1.4:+63648139 | MS.gene004961:CDS |
| AGTTCTAGACCAGCCCAAAC+AGG | 0.489088 | 1.4:-63649421 | None:intergenic |
| TTTGAAGAAAGCTTGGGAGG+TGG | 0.490681 | 1.4:+63648257 | MS.gene004961:CDS |
| TCTTAAGACACTTGCAGAGT+TGG | 0.491371 | 1.4:-63650205 | None:intergenic |
| GAACTGACCTTCCATAGAGT+TGG | 0.499204 | 1.4:-63649479 | None:intergenic |
| AGAAGTAGAATGGAGTATCA+AGG | 0.500383 | 1.4:+63648149 | MS.gene004961:CDS |
| CATTGGGTTGCTAGTAAAGC+AGG | 0.502492 | 1.4:+63649036 | MS.gene004961:CDS |
| GAAATTCTAGCTCTCTTCCA+TGG | 0.507101 | 1.4:-63648183 | None:intergenic |
| CAAAGCAACAGAAGTATCAA+TGG | 0.508008 | 1.4:+63649727 | MS.gene004961:CDS |
| AATCTTCTTGATTTCATCTG+AGG | 0.508625 | 1.4:-63650154 | None:intergenic |
| ATTATTCGACCTGTTTGGGC+TGG | 0.512091 | 1.4:+63649412 | MS.gene004961:CDS |
| TTGTTTAGATTTGTCACACT+TGG | 0.515185 | 1.4:-63650523 | None:intergenic |
| AAAAGTATAAATAGAATATG+TGG | 0.516571 | 1.4:+63648979 | MS.gene004961:CDS |
| AAAGGTAGGAATAGCACTTA+CGG | 0.517885 | 1.4:+63648314 | MS.gene004961:CDS |
| AATCCTTTGTATGATGGAGT+TGG | 0.525534 | 1.4:+63648360 | MS.gene004961:CDS |
| AAATTGAAGCGACCGTGGGC+AGG | 0.526155 | 1.4:-63649871 | None:intergenic |
| TTCATCCATTGTTTAAAGGT+AGG | 0.527615 | 1.4:+63648300 | MS.gene004961:CDS |
| TAGTAAAGCAGGAAAGCAAT+TGG | 0.530375 | 1.4:+63649047 | MS.gene004961:CDS |
| GAGCACAACATCAATGAAAG+TGG | 0.530404 | 1.4:+63650179 | MS.gene004961:CDS |
| TGGAGTATCAAGGTAGAAGA+TGG | 0.555329 | 1.4:+63648159 | MS.gene004961:CDS |
| CTATTCCTACCTTTAAACAA+TGG | 0.566154 | 1.4:-63648305 | None:intergenic |
| GTAGTCTTTGAGTACACTGC+TGG | 0.568453 | 1.4:+63648417 | MS.gene004961:CDS |
| CTTCCAACTCCATCATACAA+AGG | 0.572397 | 1.4:-63648363 | None:intergenic |
| TCAAGGTAGAAGATGGTCCA+TGG | 0.576705 | 1.4:+63648166 | MS.gene004961:CDS |
| GACGAAAATTGAAGCGACCG+TGG | 0.583474 | 1.4:-63649876 | None:intergenic |
| AATGCAAAAGAAACATCCCT+TGG | 0.591201 | 1.4:+63650354 | MS.gene004961:CDS |
| GGAAGTAATTCAAGTGGTCA+CGG | 0.591717 | 1.4:+63650404 | MS.gene004961:CDS |
| GCAAGATGGGAGCCTGCCCA+CGG | 0.596456 | 1.4:+63649859 | MS.gene004961:CDS |
| TACTGAAACTGTAGCTCGTG+TGG | 0.597026 | 1.4:+63650440 | MS.gene004961:CDS |
| AAATATGGCTCATGATGACA+AGG | 0.597714 | 1.4:+63648116 | None:intergenic |
| GGCTCATGATGACAAGGGAG+CGG | 0.607807 | 1.4:+63648122 | MS.gene004961:CDS |
| AAAGGCTAGAAATCCGGCAA+GGG | 0.610657 | 1.4:-63649007 | None:intergenic |
| TTATACCTAGTAGAAAGAGC+AGG | 0.611127 | 1.4:-63649089 | None:intergenic |
| TGAAGCTCAATCAACAAGTG+AGG | 0.612032 | 1.4:+63649661 | MS.gene004961:CDS |
| CAAAGGCTAGAAATCCGGCA+AGG | 0.615093 | 1.4:-63649008 | None:intergenic |
| AAACTTGCCAACTCTATGGA+AGG | 0.615411 | 1.4:+63649472 | MS.gene004961:CDS |
| TGTTTGATATGGCACGACAA+AGG | 0.616649 | 1.4:+63649341 | MS.gene004961:CDS |
| ATGTATAAATTCAGAAAACA+AGG | 0.617477 | 1.4:+63649972 | MS.gene004961:CDS |
| AGCACAACATCAATGAAAGT+GGG | 0.618681 | 1.4:+63650180 | MS.gene004961:CDS |
| TAGAGTTGGCAAGTTTGTCG+AGG | 0.618913 | 1.4:-63649465 | None:intergenic |
| AGCATGTGTGCATTTATCGT+AGG | 0.621407 | 1.4:+63648210 | MS.gene004961:CDS |
| ACGAAAATTGAAGCGACCGT+GGG | 0.621590 | 1.4:-63649875 | None:intergenic |
| AATAATGGAAGTAATTCAAG+TGG | 0.632468 | 1.4:+63650398 | MS.gene004961:CDS |
| TGAAGCACATCTACGCATTG+TGG | 0.638502 | 1.4:-63649929 | None:intergenic |
| GTACTCAAAGACTACTACCA+CGG | 0.644472 | 1.4:-63648409 | None:intergenic |
| AGCAACCCAATGTACGCCAA+AGG | 0.653502 | 1.4:-63649025 | None:intergenic |
| GAGTTGGAAGAAATGCTATG+TGG | 0.671160 | 1.4:+63648376 | MS.gene004961:CDS |
| AGTTGGAAGAAATGCTATGT+GGG | 0.673533 | 1.4:+63648377 | MS.gene004961:CDS |
| GATCTTGCCAGACCAGCATG+AGG | 0.682092 | 1.4:+63650563 | MS.gene004961:CDS |
| AATATGGCTCATGATGACAA+GGG | 0.722069 | 1.4:+63648117 | None:intergenic |
| TATGTGGGCAGTCATGACCG+TGG | 0.821986 | 1.4:+63648392 | MS.gene004961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAACAACTAAAATT+AGG | - | chr1.4:63648537-63648556 | None:intergenic | 10.0% |
| !! | GCAATTATAAAAAATAAATT+TGG | + | chr1.4:63650009-63650028 | MS.gene004961:intron | 10.0% |
| !! | AAAATAATTAAATGTACCTT+AGG | - | chr1.4:63650127-63650146 | None:intergenic | 15.0% |
| !! | AAATAATTAAATGTACCTTA+GGG | - | chr1.4:63650126-63650145 | None:intergenic | 15.0% |
| !! | CATACTAATAATATTATTGT+TGG | - | chr1.4:63649124-63649143 | None:intergenic | 15.0% |
| !! | TAGAATAATGAAATTATAGA+CGG | - | chr1.4:63648469-63648488 | None:intergenic | 15.0% |
| !! | TTTATATCAAAAATGTTGTA+TGG | - | chr1.4:63648712-63648731 | None:intergenic | 15.0% |
| !!! | AAAAGTATAAATAGAATATG+TGG | + | chr1.4:63648979-63648998 | MS.gene004961:CDS | 15.0% |
| !!! | AAATATCATTGATTAATTTC+AGG | + | chr1.4:63649828-63649847 | MS.gene004961:intron | 15.0% |
| !!! | ATTATTTCATCTTTGTTTTT+AGG | + | chr1.4:63649199-63649218 | MS.gene004961:intron | 15.0% |
| !!! | TTAATTTAAGGTCAAAATTA+TGG | + | chr1.4:63648579-63648598 | MS.gene004961:intron | 15.0% |
| !! | AAAATTCATCCATTGTTTAA+AGG | + | chr1.4:63648296-63648315 | MS.gene004961:CDS | 20.0% |
| !! | AATTGATGAATTGTTTGATA+TGG | + | chr1.4:63649330-63649349 | MS.gene004961:CDS | 20.0% |
| !! | AGGATTTCTACTATTATAAT+TGG | + | chr1.4:63649361-63649380 | MS.gene004961:CDS | 20.0% |
| !! | ATGTATAAATTCAGAAAACA+AGG | + | chr1.4:63649972-63649991 | MS.gene004961:CDS | 20.0% |
| !! | GTCTATAATTTCATTATTCT+AGG | + | chr1.4:63648468-63648487 | MS.gene004961:intron | 20.0% |
| !! | GTTAATCACATGTAAAATTA+TGG | - | chr1.4:63648876-63648895 | None:intergenic | 20.0% |
| !! | TTAATCACGTTAAAAAAATG+TGG | + | chr1.4:63648746-63648765 | MS.gene004961:intron | 20.0% |
| !! | TTATATATCTGCAATAAAGA+AGG | - | chr1.4:63649598-63649617 | None:intergenic | 20.0% |
| ! | AAAAATGGAAATCCCAATAA+TGG | + | chr1.4:63650383-63650402 | MS.gene004961:CDS | 25.0% |
| ! | ACATTCAAAAAATTCATACG+AGG | - | chr1.4:63649800-63649819 | None:intergenic | 25.0% |
| ! | ACTTGAATTACTTCCATTAT+TGG | - | chr1.4:63650399-63650418 | None:intergenic | 25.0% |
| ! | ATTACAACGTATATGAATCT+TGG | + | chr1.4:63649158-63649177 | MS.gene004961:intron | 25.0% |
| ! | ATTTATCCTAACTTTCAGTT+TGG | + | chr1.4:63649288-63649307 | MS.gene004961:CDS | 25.0% |
| ! | CAGAGTTAACTGTTAATTTA+AGG | + | chr1.4:63648567-63648586 | MS.gene004961:intron | 25.0% |
| ! | CTTGAATTACTTCCATTATT+GGG | - | chr1.4:63650398-63650417 | None:intergenic | 25.0% |
| ! | TATATAGACTATCAAATTGC+AGG | + | chr1.4:63648943-63648962 | MS.gene004961:intron | 25.0% |
| ! | TGGAAGCAATATCTTAAAAT+TGG | + | chr1.4:63649904-63649923 | MS.gene004961:CDS | 25.0% |
| ! | TTGAATTTATTAGAAACCCT+AGG | - | chr1.4:63649766-63649785 | None:intergenic | 25.0% |
| !! | AAACAATGGATGAATTTTCT+TGG | - | chr1.4:63648294-63648313 | None:intergenic | 25.0% |
| !! | AATAATGGAAGTAATTCAAG+TGG | + | chr1.4:63650398-63650417 | MS.gene004961:CDS | 25.0% |
| !! | ATAATCAAAACGAGCTTTTA+TGG | - | chr1.4:63649257-63649276 | None:intergenic | 25.0% |
| !! | ATTGTGTACAAATGTGTTTT+AGG | + | chr1.4:63649620-63649639 | MS.gene004961:intron | 25.0% |
| !! | ATTTCATTATTCTAGGAGTA+AGG | + | chr1.4:63648475-63648494 | MS.gene004961:intron | 25.0% |
| !! | GTCAAATAAACTTGATAGTT+TGG | + | chr1.4:63650260-63650279 | MS.gene004961:CDS | 25.0% |
| !! | TTTCATTATTCTAGGAGTAA+GGG | + | chr1.4:63648476-63648495 | MS.gene004961:intron | 25.0% |
| !!! | ATAAAAGCTCGTTTTGATTA+TGG | + | chr1.4:63649256-63649275 | MS.gene004961:CDS | 25.0% |
| !!! | ATTTTAAGATATTGCTTCCA+TGG | - | chr1.4:63649904-63649923 | None:intergenic | 25.0% |
| !!! | CAAATTTTTGAAGAAAGCTT+GGG | + | chr1.4:63648251-63648270 | MS.gene004961:CDS | 25.0% |
| !!! | TTTTAAGATATTGCTTCCAT+GGG | - | chr1.4:63649903-63649922 | None:intergenic | 25.0% |
| AATCTTCTTGATTTCATCTG+AGG | - | chr1.4:63650157-63650176 | None:intergenic | 30.0% | |
| AATTTGGATAGTGTGATATG+AGG | + | chr1.4:63650025-63650044 | MS.gene004961:intron | 30.0% | |
| ATAGTAAGACAATAACCCTA+AGG | + | chr1.4:63650108-63650127 | MS.gene004961:intron | 30.0% | |
| CTATTCCTACCTTTAAACAA+TGG | - | chr1.4:63648308-63648327 | None:intergenic | 30.0% | |
| GGAGTCTAACAAAAATTTGA+TGG | + | chr1.4:63649682-63649701 | MS.gene004961:CDS | 30.0% | |
| TACTTGAATCCTTTGTATGA+TGG | + | chr1.4:63648354-63648373 | MS.gene004961:CDS | 30.0% | |
| TGCATTGAAAATTGTGAATG+AGG | - | chr1.4:63648842-63648861 | None:intergenic | 30.0% | |
| TTACTATATATCGATCGAGA+AGG | - | chr1.4:63650095-63650114 | None:intergenic | 30.0% | |
| TTCATCCATTGTTTAAAGGT+AGG | + | chr1.4:63648300-63648319 | MS.gene004961:CDS | 30.0% | |
| TTGAAACCAAACTGAAAGTT+AGG | - | chr1.4:63649297-63649316 | None:intergenic | 30.0% | |
| TTGTTTAGATTTGTCACACT+TGG | - | chr1.4:63650526-63650545 | None:intergenic | 30.0% | |
| ! | TTCAGTTTGGTTTCAATATC+TGG | + | chr1.4:63649301-63649320 | MS.gene004961:CDS | 30.0% |
| !! | GCAAATTTTTGAAGAAAGCT+TGG | + | chr1.4:63648250-63648269 | MS.gene004961:CDS | 30.0% |
| AAAGGTAGGAATAGCACTTA+CGG | + | chr1.4:63648314-63648333 | MS.gene004961:CDS | 35.0% | |
| AATGCAAAAGAAACATCCCT+TGG | + | chr1.4:63650354-63650373 | MS.gene004961:CDS | 35.0% | |
| ACCACGTTAAACAGTGAATA+TGG | - | chr1.4:63648626-63648645 | None:intergenic | 35.0% | |
| ACCATATTCACTGTTTAACG+TGG | + | chr1.4:63648622-63648641 | MS.gene004961:intron | 35.0% | |
| AGCACAACATCAATGAAAGT+GGG | + | chr1.4:63650180-63650199 | MS.gene004961:CDS | 35.0% | |
| AGTTGGAAGAAATGCTATGT+GGG | + | chr1.4:63648377-63648396 | MS.gene004961:CDS | 35.0% | |
| ATGTGATTAACCATGTGTCA+CGG | + | chr1.4:63648885-63648904 | MS.gene004961:intron | 35.0% | |
| CAATTGGAACCCATAATTGT+TGG | + | chr1.4:63649063-63649082 | MS.gene004961:CDS | 35.0% | |
| CATGATTATTCGACCTGTTT+GGG | + | chr1.4:63649408-63649427 | MS.gene004961:CDS | 35.0% | |
| TAACCATGTGTTGCAGATTA+GGG | + | chr1.4:63648674-63648693 | MS.gene004961:intron | 35.0% | |
| TAGTAAAGCAGGAAAGCAAT+TGG | + | chr1.4:63649047-63649066 | MS.gene004961:CDS | 35.0% | |
| TCAGGCTAATTTAGCAAGAT+GGG | + | chr1.4:63649846-63649865 | MS.gene004961:intron | 35.0% | |
| TTAACCATGTGTTGCAGATT+AGG | + | chr1.4:63648673-63648692 | MS.gene004961:intron | 35.0% | |
| TTATACCTAGTAGAAAGAGC+AGG | - | chr1.4:63649092-63649111 | None:intergenic | 35.0% | |
| TTCAGGCTAATTTAGCAAGA+TGG | + | chr1.4:63649845-63649864 | MS.gene004961:intron | 35.0% | |
| ! | AATCCTTTGTATGATGGAGT+TGG | + | chr1.4:63648360-63648379 | MS.gene004961:CDS | 35.0% |
| ! | AGAAGTAGAATGGAGTATCA+AGG | + | chr1.4:63648149-63648168 | MS.gene004961:CDS | 35.0% |
| ! | CAAAACGAGCTTTTATGGTT+GGG | - | chr1.4:63649252-63649271 | None:intergenic | 35.0% |
| ! | CATTGATACTTCTGTTGCTT+TGG | - | chr1.4:63649729-63649748 | None:intergenic | 35.0% |
| ! | TCAAAACGAGCTTTTATGGT+TGG | - | chr1.4:63649253-63649272 | None:intergenic | 35.0% |
| ! | TCATGTATTGATGCTCTTGT+TGG | + | chr1.4:63649949-63649968 | MS.gene004961:CDS | 35.0% |
| !! | ATTTTTGAAGAAAGCTTGGG+AGG | + | chr1.4:63648254-63648273 | MS.gene004961:CDS | 35.0% |
| !! | CAAAGCAACAGAAGTATCAA+TGG | + | chr1.4:63649727-63649746 | MS.gene004961:CDS | 35.0% |
| !! | GGACATTTCTGTTTTGAACT+TGG | - | chr1.4:63650505-63650524 | None:intergenic | 35.0% |
| !! | TTCCATTTTTGCATCACCAA+GGG | - | chr1.4:63650373-63650392 | None:intergenic | 35.0% |
| !! | TTTCCATTTTTGCATCACCA+AGG | - | chr1.4:63650374-63650393 | None:intergenic | 35.0% |
| !!! | CAAATGTGTTTTAGGTTGTG+TGG | + | chr1.4:63649628-63649647 | MS.gene004961:intron | 35.0% |
| !!! | GAACTCTATGTTTTAGTCAC+CGG | + | chr1.4:63649439-63649458 | MS.gene004961:CDS | 35.0% |
| AAACTTGCCAACTCTATGGA+AGG | + | chr1.4:63649472-63649491 | MS.gene004961:CDS | 40.0% | |
| AGCAGGACTCCAACAATTAT+GGG | - | chr1.4:63649075-63649094 | None:intergenic | 40.0% | |
| AGCATGTGTGCATTTATCGT+AGG | + | chr1.4:63648210-63648229 | MS.gene004961:CDS | 40.0% | |
| ATGGAAGGTCAGTTCAAAGA+CGG | + | chr1.4:63649487-63649506 | MS.gene004961:intron | 40.0% | |
| ATGGTATAAACCAGCTTCCT+AGG | + | chr1.4:63649746-63649765 | MS.gene004961:intron | 40.0% | |
| CTTCCAACTCCATCATACAA+AGG | - | chr1.4:63648366-63648385 | None:intergenic | 40.0% | |
| GAGCACAACATCAATGAAAG+TGG | + | chr1.4:63650179-63650198 | MS.gene004961:CDS | 40.0% | |
| GAGCGGTAAAAGAAGTAGAA+TGG | + | chr1.4:63648139-63648158 | MS.gene004961:CDS | 40.0% | |
| GAGTTGGAAGAAATGCTATG+TGG | + | chr1.4:63648376-63648395 | MS.gene004961:CDS | 40.0% | |
| GCATGATTATTCGACCTGTT+TGG | + | chr1.4:63649407-63649426 | MS.gene004961:CDS | 40.0% | |
| GGAAGTAATTCAAGTGGTCA+CGG | + | chr1.4:63650404-63650423 | MS.gene004961:CDS | 40.0% | |
| GTACTCAAAGACTACTACCA+CGG | - | chr1.4:63648412-63648431 | None:intergenic | 40.0% | |
| TATTAGAAACCCTAGGAAGC+TGG | - | chr1.4:63649759-63649778 | None:intergenic | 40.0% | |
| TCTTAAGACACTTGCAGAGT+TGG | - | chr1.4:63650208-63650227 | None:intergenic | 40.0% | |
| TGAAGCTCAATCAACAAGTG+AGG | + | chr1.4:63649661-63649680 | MS.gene004961:CDS | 40.0% | |
| TGGTATAAACCAGCTTCCTA+GGG | + | chr1.4:63649747-63649766 | MS.gene004961:intron | 40.0% | |
| TGTTGCAGATTAGGGAAAGT+CGG | + | chr1.4:63648682-63648701 | MS.gene004961:intron | 40.0% | |
| TGTTTGATATGGCACGACAA+AGG | + | chr1.4:63649341-63649360 | MS.gene004961:CDS | 40.0% | |
| TTTCCCTAATCTGCAACACA+TGG | - | chr1.4:63648680-63648699 | None:intergenic | 40.0% | |
| TTTCTCTATTCCGTGACACA+TGG | - | chr1.4:63648898-63648917 | None:intergenic | 40.0% | |
| ! | TGGAGTATCAAGGTAGAAGA+TGG | + | chr1.4:63648159-63648178 | MS.gene004961:CDS | 40.0% |
| !! | ATCCCTTGGTGATGCAAAAA+TGG | + | chr1.4:63650368-63650387 | MS.gene004961:CDS | 40.0% |
| !! | GAAATTCTAGCTCTCTTCCA+TGG | - | chr1.4:63648186-63648205 | None:intergenic | 40.0% |
| AAAGGCTAGAAATCCGGCAA+GGG | - | chr1.4:63649010-63649029 | None:intergenic | 45.0% | |
| AAGGTCAGTTCAAAGACGGA+AGG | + | chr1.4:63649491-63649510 | MS.gene004961:intron | 45.0% | |
| ACGAAAATTGAAGCGACCGT+GGG | - | chr1.4:63649878-63649897 | None:intergenic | 45.0% | |
| ATATGTGGAACTACCCTTGC+CGG | + | chr1.4:63648994-63649013 | MS.gene004961:CDS | 45.0% | |
| ATTATTCGACCTGTTTGGGC+TGG | + | chr1.4:63649412-63649431 | MS.gene004961:CDS | 45.0% | |
| CGACAAACTTGCCAACTCTA+TGG | + | chr1.4:63649468-63649487 | MS.gene004961:CDS | 45.0% | |
| GAACTGACCTTCCATAGAGT+TGG | - | chr1.4:63649482-63649501 | None:intergenic | 45.0% | |
| GAGCAGGACTCCAACAATTA+TGG | - | chr1.4:63649076-63649095 | None:intergenic | 45.0% | |
| GTAGTCTTTGAGTACACTGC+TGG | + | chr1.4:63648417-63648436 | MS.gene004961:CDS | 45.0% | |
| TACGCCAAAGGCTAGAAATC+CGG | - | chr1.4:63649016-63649035 | None:intergenic | 45.0% | |
| TACTGAAACTGTAGCTCGTG+TGG | + | chr1.4:63650440-63650459 | MS.gene004961:CDS | 45.0% | |
| TAGAGTTGGCAAGTTTGTCG+AGG | - | chr1.4:63649468-63649487 | None:intergenic | 45.0% | |
| TCAAGGTAGAAGATGGTCCA+TGG | + | chr1.4:63648166-63648185 | MS.gene004961:CDS | 45.0% | |
| TGAAGCACATCTACGCATTG+TGG | - | chr1.4:63649932-63649951 | None:intergenic | 45.0% | |
| TTGAAGAAAGCTTGGGAGGT+GGG | + | chr1.4:63648258-63648277 | MS.gene004961:CDS | 45.0% | |
| TTTGAAGAAAGCTTGGGAGG+TGG | + | chr1.4:63648257-63648276 | MS.gene004961:CDS | 45.0% | |
| ! | CATTGGGTTGCTAGTAAAGC+AGG | + | chr1.4:63649036-63649055 | MS.gene004961:CDS | 45.0% |
| ! | GCTTCAATTTTCGTCACCCA+TGG | + | chr1.4:63649884-63649903 | MS.gene004961:CDS | 45.0% |
| ! | TCTAGCCTTTGGCGTACATT+GGG | + | chr1.4:63649020-63649039 | MS.gene004961:CDS | 45.0% |
| ! | TGATTGTTGCTTCCTCATGC+TGG | - | chr1.4:63650578-63650597 | None:intergenic | 45.0% |
| ! | TTCTAGCCTTTGGCGTACAT+TGG | + | chr1.4:63649019-63649038 | MS.gene004961:CDS | 45.0% |
| !!! | AATATGATTTTAATAAATTT+TGG | - | chr1.4:63650317-63650336 | None:intergenic | 5.0% |
| AGCAACCCAATGTACGCCAA+AGG | - | chr1.4:63649028-63649047 | None:intergenic | 50.0% | |
| CAAAGGCTAGAAATCCGGCA+AGG | - | chr1.4:63649011-63649030 | None:intergenic | 50.0% | |
| GACGAAAATTGAAGCGACCG+TGG | - | chr1.4:63649879-63649898 | None:intergenic | 50.0% | |
| GATCGAACGTTGCTGCAGTT+CGG | + | chr1.4:63650065-63650084 | MS.gene004961:intron | 50.0% | |
| GGAGTCCTGCTCTTTCTACT+AGG | + | chr1.4:63649084-63649103 | MS.gene004961:CDS | 50.0% | |
| GGCAAGTTTGTCGAGGTTTC+CGG | - | chr1.4:63649461-63649480 | None:intergenic | 50.0% | |
| !! | AGTTCTAGACCAGCCCAAAC+AGG | - | chr1.4:63649424-63649443 | None:intergenic | 50.0% |
| !! | CTTGCCGGATTTCTAGCCTT+TGG | + | chr1.4:63649009-63649028 | MS.gene004961:CDS | 50.0% |
| AAATTGAAGCGACCGTGGGC+AGG | - | chr1.4:63649874-63649893 | None:intergenic | 55.0% | |
| GATCTTGCCAGACCAGCATG+AGG | + | chr1.4:63650563-63650582 | MS.gene004961:CDS | 55.0% | |
| GGCTCATGATGACAAGGGAG+CGG | + | chr1.4:63648122-63648141 | MS.gene004961:CDS | 55.0% | |
| GTTGCTTCCTCATGCTGGTC+TGG | - | chr1.4:63650573-63650592 | None:intergenic | 55.0% | |
| TATGTGGGCAGTCATGACCG+TGG | + | chr1.4:63648392-63648411 | MS.gene004961:CDS | 55.0% | |
| GCAAGATGGGAGCCTGCCCA+CGG | + | chr1.4:63649859-63649878 | MS.gene004961:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 63648120 | 63650617 | 63648120 | ID=MS.gene004961 |
| chr1.4 | mRNA | 63648120 | 63650617 | 63648120 | ID=MS.gene004961.t1;Parent=MS.gene004961 |
| chr1.4 | exon | 63648120 | 63648438 | 63648120 | ID=MS.gene004961.t1.exon1;Parent=MS.gene004961.t1 |
| chr1.4 | CDS | 63648120 | 63648438 | 63648120 | ID=cds.MS.gene004961.t1;Parent=MS.gene004961.t1 |
| chr1.4 | exon | 63648965 | 63649105 | 63648965 | ID=MS.gene004961.t1.exon2;Parent=MS.gene004961.t1 |
| chr1.4 | CDS | 63648965 | 63649105 | 63648965 | ID=cds.MS.gene004961.t1;Parent=MS.gene004961.t1 |
| chr1.4 | exon | 63649221 | 63649493 | 63649221 | ID=MS.gene004961.t1.exon3;Parent=MS.gene004961.t1 |
| chr1.4 | CDS | 63649221 | 63649493 | 63649221 | ID=cds.MS.gene004961.t1;Parent=MS.gene004961.t1 |
| chr1.4 | exon | 63649642 | 63649748 | 63649642 | ID=MS.gene004961.t1.exon4;Parent=MS.gene004961.t1 |
| chr1.4 | CDS | 63649642 | 63649748 | 63649642 | ID=cds.MS.gene004961.t1;Parent=MS.gene004961.t1 |
| chr1.4 | exon | 63649850 | 63649993 | 63649850 | ID=MS.gene004961.t1.exon5;Parent=MS.gene004961.t1 |
| chr1.4 | CDS | 63649850 | 63649993 | 63649850 | ID=cds.MS.gene004961.t1;Parent=MS.gene004961.t1 |
| chr1.4 | exon | 63650153 | 63650617 | 63650153 | ID=MS.gene004961.t1.exon6;Parent=MS.gene004961.t1 |
| chr1.4 | CDS | 63650153 | 63650617 | 63650153 | ID=cds.MS.gene004961.t1;Parent=MS.gene004961.t1 |
| Gene Sequence |
| Protein sequence |
