Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005133.t1 | XP_013468980.1 | 92.5 | 253 | 17 | 2 | 1 | 251 | 1 | 253 | 1.80E-124 | 455.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005133.t1 | O24407 | 65.2 | 250 | 61 | 5 | 14 | 251 | 1 | 236 | 5.0e-78 | 292.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005133.t1 | A0A072VMG8 | 92.5 | 253 | 17 | 2 | 1 | 251 | 1 | 253 | 1.3e-124 | 455.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005133.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005133 | MS.gene062256 | PPI |
| MS.gene005133 | MS.gene004875 | PPI |
| MS.gene005133 | MS.gene07402 | PPI |
| MS.gene005133 | MS.gene85573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005133.t1 | MTR_1g080860 | 96.838 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 0.0 | 497 |
| MS.gene005133.t1 | MTR_1g080860 | 96.281 | 242 | 7 | 2 | 1 | 240 | 1 | 242 | 6.43e-162 | 448 |
| MS.gene005133.t1 | MTR_1g093240 | 65.289 | 242 | 66 | 5 | 15 | 251 | 8 | 236 | 4.24e-99 | 289 |
| MS.gene005133.t1 | MTR_1g070520 | 65.844 | 243 | 63 | 7 | 17 | 251 | 15 | 245 | 3.86e-97 | 284 |
| MS.gene005133.t1 | MTR_7g096090 | 60.729 | 247 | 80 | 5 | 15 | 251 | 11 | 250 | 9.12e-90 | 266 |
| MS.gene005133.t1 | MTR_1g093240 | 63.913 | 230 | 65 | 5 | 15 | 239 | 8 | 224 | 1.62e-89 | 265 |
| MS.gene005133.t1 | MTR_1g093240 | 60.952 | 210 | 64 | 5 | 15 | 219 | 8 | 204 | 4.85e-75 | 227 |
| MS.gene005133.t1 | MTR_5g030710 | 47.569 | 288 | 97 | 9 | 15 | 251 | 51 | 335 | 1.18e-74 | 230 |
| MS.gene005133.t1 | MTR_8g103030 | 48.029 | 279 | 92 | 7 | 15 | 250 | 24 | 292 | 2.57e-74 | 228 |
| MS.gene005133.t1 | MTR_6g488150 | 50.190 | 263 | 80 | 8 | 15 | 250 | 15 | 253 | 3.41e-74 | 226 |
| MS.gene005133.t1 | MTR_8g067530 | 46.853 | 286 | 99 | 7 | 15 | 251 | 75 | 356 | 1.17e-72 | 226 |
| MS.gene005133.t1 | MTR_2g101500 | 45.277 | 307 | 95 | 9 | 13 | 250 | 23 | 325 | 3.75e-71 | 221 |
| MS.gene005133.t1 | MTR_5g067350 | 46.713 | 289 | 94 | 7 | 15 | 250 | 65 | 346 | 7.11e-71 | 221 |
| MS.gene005133.t1 | MTR_1g070830 | 46.725 | 229 | 81 | 5 | 15 | 240 | 12 | 202 | 5.71e-54 | 173 |
| MS.gene005133.t1 | MTR_1g076270 | 45.333 | 225 | 66 | 7 | 15 | 239 | 11 | 178 | 7.64e-52 | 167 |
| MS.gene005133.t1 | MTR_1g093350 | 45.333 | 225 | 66 | 7 | 15 | 239 | 11 | 178 | 7.64e-52 | 167 |
| MS.gene005133.t1 | MTR_1g040675 | 43.363 | 226 | 85 | 5 | 15 | 240 | 1 | 183 | 9.99e-52 | 167 |
| MS.gene005133.t1 | MTR_1g040675 | 40.000 | 205 | 80 | 6 | 15 | 219 | 1 | 162 | 2.89e-39 | 134 |
| MS.gene005133.t1 | MTR_1g069495 | 43.716 | 183 | 71 | 4 | 96 | 246 | 81 | 263 | 1.02e-36 | 130 |
| MS.gene005133.t1 | MTR_4g011880 | 41.991 | 231 | 68 | 9 | 15 | 243 | 6 | 172 | 3.71e-36 | 126 |
| MS.gene005133.t1 | MTR_2g102490 | 40.541 | 222 | 72 | 10 | 18 | 234 | 17 | 183 | 9.43e-35 | 124 |
| MS.gene005133.t1 | MTR_2g100780 | 36.546 | 249 | 128 | 10 | 21 | 242 | 18 | 263 | 4.74e-32 | 118 |
| MS.gene005133.t1 | MTR_2g100780 | 36.667 | 240 | 124 | 9 | 21 | 235 | 18 | 254 | 5.26e-32 | 118 |
| MS.gene005133.t1 | MTR_8g014520 | 35.366 | 246 | 127 | 9 | 21 | 235 | 16 | 260 | 6.49e-31 | 115 |
| MS.gene005133.t1 | MTR_8g014520 | 35.366 | 246 | 127 | 9 | 21 | 235 | 16 | 260 | 6.51e-31 | 115 |
| MS.gene005133.t1 | MTR_6g488150 | 41.848 | 184 | 58 | 7 | 15 | 173 | 15 | 174 | 9.58e-31 | 113 |
| MS.gene005133.t1 | MTR_5g067350 | 38.208 | 212 | 72 | 6 | 15 | 173 | 65 | 270 | 1.75e-27 | 106 |
| MS.gene005133.t1 | MTR_4g124300 | 35.915 | 142 | 59 | 5 | 95 | 233 | 69 | 181 | 6.63e-18 | 79.3 |
| MS.gene005133.t1 | MTR_3g106850 | 29.787 | 141 | 80 | 4 | 97 | 236 | 88 | 210 | 7.60e-18 | 79.7 |
| MS.gene005133.t1 | MTR_1g085750 | 39.796 | 98 | 47 | 3 | 135 | 232 | 85 | 170 | 3.21e-15 | 71.6 |
| MS.gene005133.t1 | MTR_4g115075 | 27.815 | 151 | 86 | 3 | 82 | 232 | 78 | 205 | 3.65e-15 | 72.4 |
| MS.gene005133.t1 | MTR_7g110790 | 38.095 | 105 | 45 | 3 | 132 | 232 | 67 | 155 | 4.21e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005133.t1 | AT3G04730 | 66.000 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 9.47e-103 | 298 |
| MS.gene005133.t1 | AT4G14550 | 64.706 | 238 | 73 | 4 | 15 | 251 | 1 | 228 | 4.09e-98 | 286 |
| MS.gene005133.t1 | AT3G23050 | 62.195 | 246 | 78 | 6 | 14 | 251 | 5 | 243 | 6.46e-97 | 284 |
| MS.gene005133.t1 | AT4G14550 | 63.436 | 227 | 72 | 4 | 15 | 240 | 1 | 217 | 4.36e-90 | 266 |
| MS.gene005133.t1 | AT1G04250 | 58.577 | 239 | 81 | 7 | 15 | 251 | 7 | 229 | 3.32e-88 | 261 |
| MS.gene005133.t1 | AT4G29080 | 51.799 | 278 | 93 | 9 | 9 | 250 | 32 | 304 | 1.41e-78 | 239 |
| MS.gene005133.t1 | AT4G14550 | 60.976 | 205 | 69 | 4 | 15 | 218 | 1 | 195 | 3.28e-75 | 227 |
| MS.gene005133.t1 | AT3G23050 | 58.216 | 213 | 75 | 5 | 14 | 219 | 5 | 210 | 3.17e-74 | 225 |
| MS.gene005133.t1 | AT5G65670 | 48.264 | 288 | 101 | 9 | 7 | 251 | 54 | 336 | 9.81e-69 | 215 |
| MS.gene005133.t1 | AT2G22670 | 45.520 | 279 | 102 | 6 | 15 | 250 | 47 | 318 | 2.08e-67 | 211 |
| MS.gene005133.t1 | AT2G22670 | 45.520 | 279 | 102 | 6 | 15 | 250 | 47 | 318 | 2.08e-67 | 211 |
| MS.gene005133.t1 | AT2G22670 | 45.520 | 279 | 102 | 6 | 15 | 250 | 64 | 335 | 2.34e-67 | 212 |
| MS.gene005133.t1 | AT5G65670 | 47.931 | 290 | 101 | 10 | 7 | 251 | 54 | 338 | 9.97e-67 | 210 |
| MS.gene005133.t1 | AT2G22670 | 44.803 | 279 | 102 | 7 | 15 | 250 | 47 | 316 | 3.54e-64 | 203 |
| MS.gene005133.t1 | AT2G22670 | 44.803 | 279 | 102 | 7 | 15 | 250 | 47 | 316 | 3.54e-64 | 203 |
| MS.gene005133.t1 | AT1G04240 | 47.577 | 227 | 75 | 7 | 14 | 240 | 4 | 186 | 1.30e-60 | 189 |
| MS.gene005133.t1 | AT1G04240 | 47.577 | 227 | 75 | 7 | 14 | 240 | 104 | 286 | 2.38e-59 | 189 |
| MS.gene005133.t1 | AT5G43700 | 48.899 | 227 | 62 | 8 | 14 | 240 | 10 | 182 | 4.59e-58 | 183 |
| MS.gene005133.t1 | AT4G14550 | 57.500 | 160 | 57 | 4 | 15 | 173 | 1 | 150 | 7.81e-47 | 154 |
| MS.gene005133.t1 | AT3G23030 | 42.308 | 234 | 64 | 6 | 10 | 239 | 4 | 170 | 2.21e-45 | 150 |
| MS.gene005133.t1 | AT3G23050 | 53.293 | 167 | 64 | 5 | 14 | 173 | 5 | 164 | 9.16e-45 | 148 |
| MS.gene005133.t1 | AT3G23030 | 42.308 | 234 | 64 | 6 | 10 | 239 | 91 | 257 | 1.55e-44 | 150 |
| MS.gene005133.t1 | AT3G15540 | 41.494 | 241 | 83 | 9 | 15 | 246 | 6 | 197 | 8.32e-43 | 144 |
| MS.gene005133.t1 | AT4G14560 | 40.541 | 222 | 68 | 6 | 15 | 236 | 7 | 164 | 8.68e-43 | 143 |
| MS.gene005133.t1 | AT2G33310 | 43.684 | 190 | 85 | 6 | 73 | 245 | 53 | 237 | 4.41e-39 | 136 |
| MS.gene005133.t1 | AT1G15580 | 40.724 | 221 | 61 | 7 | 15 | 234 | 8 | 159 | 1.47e-38 | 132 |
| MS.gene005133.t1 | AT2G33310 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 1.02e-37 | 132 |
| MS.gene005133.t1 | AT2G33310 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 1.02e-37 | 132 |
| MS.gene005133.t1 | AT1G04550 | 40.404 | 198 | 80 | 6 | 73 | 246 | 47 | 230 | 1.10e-36 | 130 |
| MS.gene005133.t1 | AT1G52830 | 38.938 | 226 | 92 | 8 | 15 | 240 | 6 | 185 | 2.00e-35 | 125 |
| MS.gene005133.t1 | AT3G16500 | 36.327 | 245 | 121 | 8 | 8 | 235 | 26 | 252 | 4.77e-34 | 124 |
| MS.gene005133.t1 | AT3G16500 | 36.327 | 245 | 121 | 8 | 8 | 235 | 26 | 252 | 4.79e-34 | 124 |
| MS.gene005133.t1 | AT4G28640 | 45.570 | 158 | 69 | 5 | 97 | 240 | 88 | 242 | 6.27e-33 | 120 |
| MS.gene005133.t1 | AT4G28640 | 45.223 | 157 | 69 | 5 | 96 | 238 | 87 | 240 | 1.12e-32 | 120 |
| MS.gene005133.t1 | AT4G28640 | 45.513 | 156 | 68 | 5 | 97 | 238 | 88 | 240 | 9.72e-32 | 119 |
| MS.gene005133.t1 | AT1G51950 | 39.205 | 176 | 74 | 5 | 82 | 235 | 86 | 250 | 1.31e-29 | 112 |
| MS.gene005133.t1 | AT5G25890 | 36.842 | 190 | 93 | 5 | 54 | 242 | 7 | 170 | 1.36e-27 | 104 |
| MS.gene005133.t1 | AT1G04100 | 41.317 | 167 | 70 | 5 | 99 | 239 | 95 | 259 | 3.71e-26 | 103 |
| MS.gene005133.t1 | AT3G17600 | 34.722 | 144 | 67 | 4 | 89 | 232 | 38 | 154 | 4.18e-22 | 89.7 |
| MS.gene005133.t1 | AT2G46990 | 39.583 | 96 | 45 | 1 | 135 | 230 | 86 | 168 | 1.05e-16 | 75.9 |
| MS.gene005133.t1 | AT3G62100 | 38.776 | 98 | 47 | 1 | 135 | 232 | 84 | 168 | 1.40e-16 | 75.5 |
| MS.gene005133.t1 | AT4G32280 | 27.684 | 177 | 81 | 4 | 85 | 232 | 82 | 240 | 6.00e-16 | 75.5 |
| MS.gene005133.t1 | AT4G32280 | 35.714 | 98 | 45 | 2 | 135 | 232 | 119 | 198 | 9.19e-16 | 73.9 |
| MS.gene005133.t1 | AT1G80390 | 33.553 | 152 | 55 | 4 | 20 | 171 | 19 | 124 | 4.62e-13 | 64.7 |
| MS.gene005133.t1 | AT2G46990 | 38.824 | 85 | 39 | 1 | 135 | 219 | 86 | 157 | 5.38e-12 | 62.8 |
| MS.gene005133.t1 | AT3G62100 | 37.647 | 85 | 40 | 1 | 135 | 219 | 84 | 155 | 1.70e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACTCTTGTACAATTTA+AGG | 0.136546 | 1.1:+60160787 | None:intergenic |
| GATGAAGCAGAATCATTTAT+AGG | 0.292641 | 1.1:+60162952 | None:intergenic |
| TCATAAAGTCCTTGGTAACT+TGG | 0.357262 | 1.1:+60160703 | None:intergenic |
| GAGTTACGACTCGGTCTTCC+AGG | 0.382644 | 1.1:-60163069 | MS.gene005133:CDS |
| CACAACAAGGATTTCAGCTT+CGG | 0.389197 | 1.1:+60160162 | None:intergenic |
| TTCTTTCTGAAAGATCTAAC+TGG | 0.401360 | 1.1:+60160930 | None:intergenic |
| AGGTCCACCTTACGTAGATA+TGG | 0.411796 | 1.1:+60160807 | None:intergenic |
| ATGAAAGGTTCCGAGGCAAT+TGG | 0.416704 | 1.1:-60160325 | MS.gene005133:CDS |
| CCTTCACAATTGACAATTGT+GGG | 0.417767 | 1.1:-60160728 | MS.gene005133:CDS |
| AAGAGAAAATGACTAACGTT+GGG | 0.423757 | 1.1:-60163137 | None:intergenic |
| GCTTTCATTCATAAAGTCCT+TGG | 0.434299 | 1.1:+60160695 | None:intergenic |
| TGCTTGTTGGTGATGTTCCA+TGG | 0.442945 | 1.1:-60160605 | MS.gene005133:CDS |
| AGCACAAGTGGTGGTGGGAA+TGG | 0.463834 | 1.1:-60160861 | MS.gene005133:CDS |
| CCAGCGCATCTGACAGCTCT+TGG | 0.472063 | 1.1:+60160766 | None:intergenic |
| TGAAAGGTTCCGAGGCAATT+GGG | 0.476415 | 1.1:-60160324 | MS.gene005133:CDS |
| AATTTGTAGGGCACAAGTTG+TGG | 0.477874 | 1.1:-60160961 | MS.gene005133:intron |
| CATAATCAGAACCGTTCAAA+AGG | 0.478352 | 1.1:+60160661 | None:intergenic |
| CCATCTTTGTCTTCATATGT+TGG | 0.478384 | 1.1:+60160636 | None:intergenic |
| CCAAGAGCTGTCAGATGCGC+TGG | 0.479602 | 1.1:-60160766 | MS.gene005133:CDS |
| GATAAGAGCACAAGTGGTGG+TGG | 0.485348 | 1.1:-60160867 | MS.gene005133:CDS |
| TCCTTCACAATTGACAATTG+TGG | 0.492530 | 1.1:-60160729 | MS.gene005133:CDS |
| CTTCCAGGTGCAGGTGGTCA+CGG | 0.493967 | 1.1:-60163054 | MS.gene005133:CDS |
| ATGAAGACAAAGATGGTGAT+TGG | 0.495668 | 1.1:-60160629 | MS.gene005133:CDS |
| TCTCCGTGACCACCTGCACC+TGG | 0.506909 | 1.1:+60163051 | None:intergenic |
| GATGGTGATTGGATGCTTGT+TGG | 0.521825 | 1.1:-60160618 | MS.gene005133:CDS |
| GGTTCCGAGGCAATTGGGCT+AGG | 0.522558 | 1.1:-60160319 | MS.gene005133:intron |
| CATAAAGTCCTTGGTAACTT+GGG | 0.531177 | 1.1:+60160704 | None:intergenic |
| GCTTGTTGGTGATGTTCCAT+GGG | 0.534588 | 1.1:-60160604 | MS.gene005133:CDS |
| TTTACCTAGCCCAATTGCCT+CGG | 0.542690 | 1.1:+60160315 | None:intergenic |
| CGACTCGGTCTTCCAGGTGC+AGG | 0.544223 | 1.1:-60163063 | MS.gene005133:CDS |
| TGGAAGACCGAGTCGTAACT+CGG | 0.546250 | 1.1:+60163071 | None:intergenic |
| TGGGAATGGAGCATTTGTTA+AGG | 0.549372 | 1.1:-60160847 | MS.gene005133:CDS |
| ATTTGTAGGGCACAAGTTGT+GGG | 0.551340 | 1.1:-60160960 | MS.gene005133:intron |
| AATTACAGCACCAAGGGCAG+TGG | 0.556761 | 1.1:-60160198 | MS.gene005133:intron |
| AAAGAGAAAATGACTAACGT+TGG | 0.560324 | 1.1:-60163138 | None:intergenic |
| ACTCACTTAGCACGAGGAGG+AGG | 0.561360 | 1.1:+60162862 | None:intergenic |
| TTTGTTAAGGTGAGCATGGA+TGG | 0.571730 | 1.1:-60160834 | MS.gene005133:CDS |
| GAAGCAGATAAGAGCACAAG+TGG | 0.581742 | 1.1:-60160873 | MS.gene005133:CDS |
| CTCGGTCTTCCAGGTGCAGG+TGG | 0.582252 | 1.1:-60163060 | MS.gene005133:CDS |
| ATTGTTAATTACAGCACCAA+GGG | 0.584897 | 1.1:-60160204 | MS.gene005133:intron |
| AAAAGGGCTACTCACTCCCA+TGG | 0.587502 | 1.1:+60160588 | None:intergenic |
| CCAACATATGAAGACAAAGA+TGG | 0.591098 | 1.1:-60160636 | MS.gene005133:CDS |
| GTAGGGCACAAGTTGTGGGA+TGG | 0.599917 | 1.1:-60160956 | MS.gene005133:intron |
| AGCATTTGTTAAGGTGAGCA+TGG | 0.602441 | 1.1:-60160838 | MS.gene005133:CDS |
| CCCACAATTGTCAATTGTGA+AGG | 0.603780 | 1.1:+60160728 | None:intergenic |
| TGGTGCACCATATCTACGTA+AGG | 0.613344 | 1.1:-60160814 | MS.gene005133:CDS |
| GCAGATAAGAGCACAAGTGG+TGG | 0.620410 | 1.1:-60160870 | MS.gene005133:CDS |
| AAGCGTCTTCGCATAATGAA+AGG | 0.624465 | 1.1:-60160340 | MS.gene005133:CDS |
| GCATCTGTAGCTGAAAACAA+AGG | 0.629179 | 1.1:-60162916 | MS.gene005133:CDS |
| ATAAGAGCACAAGTGGTGGT+GGG | 0.631680 | 1.1:-60160866 | MS.gene005133:CDS |
| GAGGAGACCGAGTTACGACT+CGG | 0.639589 | 1.1:-60163078 | MS.gene005133:CDS |
| TATTGTTAATTACAGCACCA+AGG | 0.651227 | 1.1:-60160205 | MS.gene005133:intron |
| AGAGAAAATGACTAACGTTG+GGG | 0.657706 | 1.1:-60163136 | None:intergenic |
| TTTCTGAAAGATCTAACTGG+TGG | 0.659624 | 1.1:+60160933 | None:intergenic |
| TTGTGGGTCCCAAGTTACCA+AGG | 0.660834 | 1.1:-60160712 | MS.gene005133:CDS |
| TCGCATAATGAAAGGTTCCG+AGG | 0.668062 | 1.1:-60160332 | MS.gene005133:CDS |
| TGCACCATATCTACGTAAGG+TGG | 0.669757 | 1.1:-60160811 | MS.gene005133:CDS |
| AAAACTCACTTAGCACGAGG+AGG | 0.704960 | 1.1:+60162859 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATAGTATTATTTTAGT+TGG | - | chr1.1:60161810-60161829 | MS.gene005133:intron | 10.0% |
| !!! | AATTTTATTCAAAAAATTTG+AGG | + | chr1.1:60161487-60161506 | None:intergenic | 10.0% |
| !!! | AATTTTTAAAAGAATAAACA+TGG | - | chr1.1:60161640-60161659 | MS.gene005133:intron | 10.0% |
| !!! | ATTTTGAATAAGTTTTAATT+AGG | - | chr1.1:60160816-60160835 | MS.gene005133:CDS | 10.0% |
| !!! | CTTATAAAAATGTTTTAATT+AGG | - | chr1.1:60160842-60160861 | MS.gene005133:CDS | 10.0% |
| !! | AATTAACAATATTATATGAG+TGG | + | chr1.1:60161919-60161938 | None:intergenic | 15.0% |
| !! | ATATTATTGTTTAACAAAAC+AGG | + | chr1.1:60161239-60161258 | None:intergenic | 15.0% |
| !! | ATTAAAATTCATGTCAATAT+AGG | + | chr1.1:60161513-60161532 | None:intergenic | 15.0% |
| !! | TAATGAATATTGAATTTGTA+GGG | - | chr1.1:60162331-60162350 | MS.gene005133:intron | 15.0% |
| !! | TGAATAATTAAGTTATATCT+AGG | - | chr1.1:60160585-60160604 | MS.gene005133:intron | 15.0% |
| !! | TTAATGAATATTGAATTTGT+AGG | - | chr1.1:60162330-60162349 | MS.gene005133:intron | 15.0% |
| !!! | AAAAAAAATAAAGTATTGGA+TGG | - | chr1.1:60161759-60161778 | MS.gene005133:intron | 15.0% |
| !!! | AAATTAGGTTTAAAACATTA+TGG | - | chr1.1:60163053-60163072 | MS.gene005133:CDS | 15.0% |
| !!! | AAGTTTAATGTTAGTTTTTA+TGG | + | chr1.1:60161296-60161315 | None:intergenic | 15.0% |
| !!! | TGTAATAAAATTGATTTTGA+AGG | + | chr1.1:60161581-60161600 | None:intergenic | 15.0% |
| !! | AAGGATAAATAAAGTTGAAA+AGG | - | chr1.1:60161950-60161969 | MS.gene005133:intron | 20.0% |
| !! | AATTAAAACAATGAAATGTG+AGG | + | chr1.1:60162747-60162766 | None:intergenic | 20.0% |
| !! | ATAGTCATACTCTTATTAAT+TGG | - | chr1.1:60162897-60162916 | MS.gene005133:CDS | 20.0% |
| !! | ATCTGTTTAATAAGATTAGT+TGG | - | chr1.1:60162282-60162301 | MS.gene005133:intron | 20.0% |
| !! | ATTTGTGTTTAATTGGAAAT+TGG | - | chr1.1:60162078-60162097 | MS.gene005133:intron | 20.0% |
| !! | ATTTGTTTGTGAAAAACTAT+TGG | - | chr1.1:60161016-60161035 | MS.gene005133:intron | 20.0% |
| !! | CATAAATTACTGTAGTATAA+AGG | - | chr1.1:60162047-60162066 | MS.gene005133:intron | 20.0% |
| !! | GTAATTTATGCATGAATTAT+TGG | + | chr1.1:60162037-60162056 | None:intergenic | 20.0% |
| !! | TCAAATGCATTTAACAAATT+AGG | - | chr1.1:60163038-60163057 | MS.gene005133:CDS | 20.0% |
| !! | TCATAGAGTATAGATAATTA+AGG | - | chr1.1:60160712-60160731 | MS.gene005133:CDS | 20.0% |
| !!! | AAATTTTTATTGGTTTGAGT+TGG | + | chr1.1:60162817-60162836 | None:intergenic | 20.0% |
| !!! | AATGTTTTAATTAGGTTAGA+AGG | - | chr1.1:60160850-60160869 | MS.gene005133:CDS | 20.0% |
| !!! | ACTTTATTTATCCTTTTGTT+TGG | + | chr1.1:60161945-60161964 | None:intergenic | 20.0% |
| !!! | CTTTATTTATCCTTTTGTTT+GGG | + | chr1.1:60161944-60161963 | None:intergenic | 20.0% |
| !!! | TTTATTTATCCTTTTGTTTG+GGG | + | chr1.1:60161943-60161962 | None:intergenic | 20.0% |
| !!! | TTTTTTGAACATGACAATTT+TGG | - | chr1.1:60160960-60160979 | MS.gene005133:intron | 20.0% |
| ! | AGACTATATAACAATGTGAT+AGG | + | chr1.1:60162010-60162029 | None:intergenic | 25.0% |
| ! | ATGATCAAAATGTTATGAGT+CGG | + | chr1.1:60162879-60162898 | None:intergenic | 25.0% |
| ! | TGAACATCAATGATCTTAAT+CGG | + | chr1.1:60162158-60162177 | None:intergenic | 25.0% |
| ! | TTATCTATACTCTATGAACA+AGG | + | chr1.1:60160709-60160728 | None:intergenic | 25.0% |
| !! | AAATTGATTGACCTTTTGAA+CGG | - | chr1.1:60162632-60162651 | MS.gene005133:intron | 25.0% |
| !! | ACGACGTAACAAATTTTTAT+TGG | + | chr1.1:60162827-60162846 | None:intergenic | 25.0% |
| !! | ATAATCTGGATGACATTTTT+AGG | + | chr1.1:60161712-60161731 | None:intergenic | 25.0% |
| !! | GTTTCTTGTTCCATAATTTT+TGG | - | chr1.1:60160908-60160927 | MS.gene005133:CDS | 25.0% |
| !! | TATTTTTCTTGCACATAATC+TGG | + | chr1.1:60161726-60161745 | None:intergenic | 25.0% |
| !!! | AAAAATAAAGTATTGGATGG+TGG | - | chr1.1:60161762-60161781 | MS.gene005133:intron | 25.0% |
| !!! | TTATTTATCCTTTTGTTTGG+GGG | + | chr1.1:60161942-60161961 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGGATTTTTTCTG+CGG | - | chr1.1:60161823-60161842 | MS.gene005133:intron | 25.0% |
| AAAGAAAAAGACAAGACACT+TGG | - | chr1.1:60161873-60161892 | MS.gene005133:intron | 30.0% | |
| ATTGTTAATTACAGCACCAA+GGG | - | chr1.1:60163100-60163119 | MS.gene005133:CDS | 30.0% | |
| CCAATTAAACACAAATTCTC+TGG | + | chr1.1:60162074-60162093 | None:intergenic | 30.0% | |
| CCAGAGAATTTGTGTTTAAT+TGG | - | chr1.1:60162071-60162090 | MS.gene005133:intron | 30.0% | |
| GAAATGTGAGGTGAAAAAAA+GGG | + | chr1.1:60162735-60162754 | None:intergenic | 30.0% | |
| GATGAAGCAGAATCATTTAT+AGG | + | chr1.1:60160355-60160374 | None:intergenic | 30.0% | |
| GCAAATTCTGCCAAAAATTA+TGG | + | chr1.1:60160921-60160940 | None:intergenic | 30.0% | |
| GGTAACTCTTGTACAATTTA+AGG | + | chr1.1:60162520-60162539 | None:intergenic | 30.0% | |
| GTTTGTGATTAAAGATCACA+CGG | - | chr1.1:60160875-60160894 | MS.gene005133:CDS | 30.0% | |
| TATTGTTAATTACAGCACCA+AGG | - | chr1.1:60163099-60163118 | MS.gene005133:CDS | 30.0% | |
| TCACCTGTTAAAAATAGTTG+CGG | - | chr1.1:60160277-60160296 | MS.gene005133:intron | 30.0% | |
| TGAAATGTGAGGTGAAAAAA+AGG | + | chr1.1:60162736-60162755 | None:intergenic | 30.0% | |
| TGATCAAAATGTTATGAGTC+GGG | + | chr1.1:60162878-60162897 | None:intergenic | 30.0% | |
| ! | ATTGGCAATTTGAGTTTGAT+TGG | - | chr1.1:60161034-60161053 | MS.gene005133:intron | 30.0% |
| ! | GTACAGCTTGATAAATTTTG+AGG | - | chr1.1:60160207-60160226 | MS.gene005133:intron | 30.0% |
| ! | TTCTTTCTGAAAGATCTAAC+TGG | + | chr1.1:60162377-60162396 | None:intergenic | 30.0% |
| ! | TTTGAACATGACAATTTTGG+TGG | - | chr1.1:60160963-60160982 | MS.gene005133:intron | 30.0% |
| !! | TTTATTGGTTTGAGTTGGTT+CGG | + | chr1.1:60162812-60162831 | None:intergenic | 30.0% |
| !!! | TTTCCGCAACTATTTTTAAC+AGG | + | chr1.1:60160283-60160302 | None:intergenic | 30.0% |
| AAAAATAGTTGCGGAAAGAG+AGG | - | chr1.1:60160286-60160305 | MS.gene005133:intron | 35.0% | |
| AAGATCACACGGTTACAATT+AGG | - | chr1.1:60160886-60160905 | MS.gene005133:CDS | 35.0% | |
| ACAACGTATGGTAATCAATC+AGG | - | chr1.1:60161663-60161682 | MS.gene005133:intron | 35.0% | |
| AGGGGAATCTTATTAGAAAG+AGG | - | chr1.1:60160669-60160688 | MS.gene005133:CDS | 35.0% | |
| ATGAAGACAAAGATGGTGAT+TGG | - | chr1.1:60162675-60162694 | MS.gene005133:intron | 35.0% | |
| ATTTGTGTGCAACACTATTG+AGG | - | chr1.1:60160649-60160668 | MS.gene005133:CDS | 35.0% | |
| CAACGTATGGTAATCAATCA+GGG | - | chr1.1:60161664-60161683 | MS.gene005133:intron | 35.0% | |
| CATAATCAGAACCGTTCAAA+AGG | + | chr1.1:60162646-60162665 | None:intergenic | 35.0% | |
| CATCAATGATCTTAATCGGA+TGG | + | chr1.1:60162154-60162173 | None:intergenic | 35.0% | |
| CCAACATATGAAGACAAAGA+TGG | - | chr1.1:60162668-60162687 | MS.gene005133:intron | 35.0% | |
| CCATCTTTGTCTTCATATGT+TGG | + | chr1.1:60162671-60162690 | None:intergenic | 35.0% | |
| CCTTCACAATTGACAATTGT+GGG | - | chr1.1:60162576-60162595 | MS.gene005133:intron | 35.0% | |
| GAATAAACATGGACAACGTA+TGG | - | chr1.1:60161651-60161670 | MS.gene005133:intron | 35.0% | |
| GCTTTCATTCATAAAGTCCT+TGG | + | chr1.1:60162612-60162631 | None:intergenic | 35.0% | |
| GTTACGTCGTGTAACAAATT+TGG | - | chr1.1:60162837-60162856 | MS.gene005133:intron | 35.0% | |
| TCCTTCACAATTGACAATTG+TGG | - | chr1.1:60162575-60162594 | MS.gene005133:intron | 35.0% | |
| TGTTAATTCCCCCAAACAAA+AGG | - | chr1.1:60161931-60161950 | MS.gene005133:intron | 35.0% | |
| TTTGTGTGCAACACTATTGA+GGG | - | chr1.1:60160650-60160669 | MS.gene005133:CDS | 35.0% | |
| ! | CATAAAGTCCTTGGTAACTT+GGG | + | chr1.1:60162603-60162622 | None:intergenic | 35.0% |
| ! | TCATAAAGTCCTTGGTAACT+TGG | + | chr1.1:60162604-60162623 | None:intergenic | 35.0% |
| ! | TTTCTGAAAGATCTAACTGG+TGG | + | chr1.1:60162374-60162393 | None:intergenic | 35.0% |
| !!! | GTTTTGTTTGAGACTGAGAT+AGG | - | chr1.1:60160607-60160626 | MS.gene005133:CDS | 35.0% |
| AAGCGTCTTCGCATAATGAA+AGG | - | chr1.1:60162964-60162983 | MS.gene005133:CDS | 40.0% | |
| AATTTGTAGGGCACAAGTTG+TGG | - | chr1.1:60162343-60162362 | MS.gene005133:intron | 40.0% | |
| AGAAAAACTCACTTAGCACG+AGG | + | chr1.1:60160451-60160470 | None:intergenic | 40.0% | |
| ATTTGTAGGGCACAAGTTGT+GGG | - | chr1.1:60162344-60162363 | MS.gene005133:intron | 40.0% | |
| CCCACAATTGTCAATTGTGA+AGG | + | chr1.1:60162579-60162598 | None:intergenic | 40.0% | |
| GCATCTGTAGCTGAAAACAA+AGG | - | chr1.1:60160388-60160407 | MS.gene005133:intron | 40.0% | |
| TATGGTAATCAATCAGGGCA+TGG | - | chr1.1:60161669-60161688 | MS.gene005133:intron | 40.0% | |
| TCAACGACGATAGAGAATCA+TGG | - | chr1.1:60162208-60162227 | MS.gene005133:intron | 40.0% | |
| TTGTGTGCAACACTATTGAG+GGG | - | chr1.1:60160651-60160670 | MS.gene005133:CDS | 40.0% | |
| TTTGTTAAGGTGAGCATGGA+TGG | - | chr1.1:60162470-60162489 | MS.gene005133:intron | 40.0% | |
| ! | AGCATTTGTTAAGGTGAGCA+TGG | - | chr1.1:60162466-60162485 | MS.gene005133:intron | 40.0% |
| ! | TGGGAATGGAGCATTTGTTA+AGG | - | chr1.1:60162457-60162476 | MS.gene005133:intron | 40.0% |
| !! | TGTTATGAGTCGGGTTGAAT+TGG | + | chr1.1:60162869-60162888 | None:intergenic | 40.0% |
| !!! | GATTTTTTCTGCGGATAGCA+TGG | - | chr1.1:60161832-60161851 | MS.gene005133:intron | 40.0% |
| AAAACTCACTTAGCACGAGG+AGG | + | chr1.1:60160448-60160467 | None:intergenic | 45.0% | |
| AGGTCCACCTTACGTAGATA+TGG | + | chr1.1:60162500-60162519 | None:intergenic | 45.0% | |
| ATGAAAGGTTCCGAGGCAAT+TGG | - | chr1.1:60162979-60162998 | MS.gene005133:CDS | 45.0% | |
| GATGGTGATTGGATGCTTGT+TGG | - | chr1.1:60162686-60162705 | MS.gene005133:intron | 45.0% | |
| GCATAAATTCGTGCAGTCGA+TGG | - | chr1.1:60162247-60162266 | MS.gene005133:intron | 45.0% | |
| TCGCATAATGAAAGGTTCCG+AGG | - | chr1.1:60162972-60162991 | MS.gene005133:CDS | 45.0% | |
| TGAAAGGTTCCGAGGCAATT+GGG | - | chr1.1:60162980-60162999 | MS.gene005133:CDS | 45.0% | |
| TGCACCATATCTACGTAAGG+TGG | - | chr1.1:60162493-60162512 | MS.gene005133:intron | 45.0% | |
| TGGTGCACCATATCTACGTA+AGG | - | chr1.1:60162490-60162509 | MS.gene005133:intron | 45.0% | |
| TTTACCTAGCCCAATTGCCT+CGG | + | chr1.1:60162992-60163011 | None:intergenic | 45.0% | |
| ! | ATAAGAGCACAAGTGGTGGT+GGG | - | chr1.1:60162438-60162457 | MS.gene005133:intron | 45.0% |
| ! | GAAGCAGATAAGAGCACAAG+TGG | - | chr1.1:60162431-60162450 | MS.gene005133:intron | 45.0% |
| ! | TTGCATTTTTCCACTGCCCT+TGG | + | chr1.1:60163119-60163138 | None:intergenic | 45.0% |
| ! | TTTTCTGCGGATAGCATGGT+TGG | - | chr1.1:60161836-60161855 | MS.gene005133:intron | 45.0% |
| !! | AAGTATTGGATGGTGGCTGA+AGG | - | chr1.1:60161769-60161788 | MS.gene005133:intron | 45.0% |
| !! | GCTTGTTGGTGATGTTCCAT+GGG | - | chr1.1:60162700-60162719 | MS.gene005133:intron | 45.0% |
| !! | GTTGGTTCGGTTCAGATCAT+CGG | + | chr1.1:60162799-60162818 | None:intergenic | 45.0% |
| !! | TGCTTGTTGGTGATGTTCCA+TGG | - | chr1.1:60162699-60162718 | MS.gene005133:intron | 45.0% |
| !! | AAATAAAAAAAATAAAGTAT+TGG | - | chr1.1:60161755-60161774 | MS.gene005133:intron | 5.0% |
| AAAAGGGCTACTCACTCCCA+TGG | + | chr1.1:60162719-60162738 | None:intergenic | 50.0% | |
| AATCAATCAGGGCATGGTGG+AGG | - | chr1.1:60161675-60161694 | MS.gene005133:intron | 50.0% | |
| AATTACAGCACCAAGGGCAG+TGG | - | chr1.1:60163106-60163125 | MS.gene005133:CDS | 50.0% | |
| GGTAATCAATCAGGGCATGG+TGG | - | chr1.1:60161672-60161691 | MS.gene005133:intron | 50.0% | |
| GTGACACGCACACAAGACAA+GGG | + | chr1.1:60161988-60162007 | None:intergenic | 50.0% | |
| TGAATGCGTGCAGTCGTTGA+CGG | + | chr1.1:60162112-60162131 | None:intergenic | 50.0% | |
| TGGAAGACCGAGTCGTAACT+CGG | + | chr1.1:60160236-60160255 | None:intergenic | 50.0% | |
| TGGTGGCTGAAGGAATAGGT+TGG | - | chr1.1:60161779-60161798 | MS.gene005133:intron | 50.0% | |
| TTGTGGGTCCCAAGTTACCA+AGG | - | chr1.1:60162592-60162611 | MS.gene005133:intron | 50.0% | |
| ! | CGGATAGCATGGTTGGTTGT+CGG | - | chr1.1:60161843-60161862 | MS.gene005133:intron | 50.0% |
| ! | GATAAGAGCACAAGTGGTGG+TGG | - | chr1.1:60162437-60162456 | MS.gene005133:intron | 50.0% |
| ! | GCAGATAAGAGCACAAGTGG+TGG | - | chr1.1:60162434-60162453 | MS.gene005133:intron | 50.0% |
| ! | GGATAGCATGGTTGGTTGTC+GGG | - | chr1.1:60161844-60161863 | MS.gene005133:intron | 50.0% |
| ! | TGGATGGTGGCTGAAGGAAT+AGG | - | chr1.1:60161775-60161794 | MS.gene005133:intron | 50.0% |
| ACTCACTTAGCACGAGGAGG+AGG | + | chr1.1:60160445-60160464 | None:intergenic | 55.0% | |
| GAGGAGACCGAGTTACGACT+CGG | - | chr1.1:60160226-60160245 | MS.gene005133:intron | 55.0% | |
| GGTGACACGCACACAAGACA+AGG | + | chr1.1:60161989-60162008 | None:intergenic | 55.0% | |
| GTAGGGCACAAGTTGTGGGA+TGG | - | chr1.1:60162348-60162367 | MS.gene005133:intron | 55.0% | |
| !! | AGCACAAGTGGTGGTGGGAA+TGG | - | chr1.1:60162443-60162462 | MS.gene005133:intron | 55.0% |
| !! | GAGTTACGACTCGGTCTTCC+AGG | - | chr1.1:60160235-60160254 | MS.gene005133:intron | 55.0% |
| CCAAGAGCTGTCAGATGCGC+TGG | - | chr1.1:60162538-60162557 | MS.gene005133:intron | 60.0% | |
| CCAGCGCATCTGACAGCTCT+TGG | + | chr1.1:60162541-60162560 | None:intergenic | 60.0% | |
| CTTCCAGGTGCAGGTGGTCA+CGG | - | chr1.1:60160250-60160269 | MS.gene005133:intron | 60.0% | |
| GGTTCCGAGGCAATTGGGCT+AGG | - | chr1.1:60162985-60163004 | MS.gene005133:CDS | 60.0% | |
| ! | GCACACAAGACAAGGGCGTG+TGG | + | chr1.1:60161981-60162000 | None:intergenic | 60.0% |
| CTCGGTCTTCCAGGTGCAGG+TGG | - | chr1.1:60160244-60160263 | MS.gene005133:intron | 65.0% | |
| TCTCCGTGACCACCTGCACC+TGG | + | chr1.1:60160256-60160275 | None:intergenic | 65.0% | |
| !! | CGACTCGGTCTTCCAGGTGC+AGG | - | chr1.1:60160241-60160260 | MS.gene005133:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 60160175 | 60163151 | 60160175 | ID=MS.gene005133 |
| chr1.1 | mRNA | 60160175 | 60163151 | 60160175 | ID=MS.gene005133.t1;Parent=MS.gene005133 |
| chr1.1 | exon | 60162868 | 60163151 | 60162868 | ID=MS.gene005133.t1.exon1;Parent=MS.gene005133.t1 |
| chr1.1 | CDS | 60162868 | 60163151 | 60162868 | ID=cds.MS.gene005133.t1;Parent=MS.gene005133.t1 |
| chr1.1 | exon | 60160603 | 60160974 | 60160603 | ID=MS.gene005133.t1.exon2;Parent=MS.gene005133.t1 |
| chr1.1 | CDS | 60160603 | 60160974 | 60160603 | ID=cds.MS.gene005133.t1;Parent=MS.gene005133.t1 |
| chr1.1 | exon | 60160320 | 60160381 | 60160320 | ID=MS.gene005133.t1.exon3;Parent=MS.gene005133.t1 |
| chr1.1 | CDS | 60160320 | 60160381 | 60160320 | ID=cds.MS.gene005133.t1;Parent=MS.gene005133.t1 |
| chr1.1 | exon | 60160175 | 60160212 | 60160175 | ID=MS.gene005133.t1.exon4;Parent=MS.gene005133.t1 |
| chr1.1 | CDS | 60160175 | 60160212 | 60160175 | ID=cds.MS.gene005133.t1;Parent=MS.gene005133.t1 |
| Gene Sequence |
| Protein sequence |
