AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85573


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85573.t1 MTR_1g093240 99.576 236 1 0 1 236 1 236 2.42e-176 484
MS.gene85573.t1 MTR_1g093240 99.554 224 1 0 1 224 1 224 5.12e-166 457
MS.gene85573.t1 MTR_1g093240 99.510 204 1 0 1 204 1 204 2.54e-150 417
MS.gene85573.t1 MTR_1g070520 68.619 239 51 7 12 236 17 245 2.28e-102 297
MS.gene85573.t1 MTR_7g096090 63.710 248 67 5 6 236 9 250 7.87e-98 286
MS.gene85573.t1 MTR_1g080860 63.115 244 70 6 8 236 15 253 1.96e-96 282
MS.gene85573.t1 MTR_1g080860 61.638 232 69 6 8 224 15 241 5.40e-87 258
MS.gene85573.t1 MTR_6g488150 50.973 257 85 6 6 236 13 254 8.32e-79 238
MS.gene85573.t1 MTR_8g103030 48.364 275 93 8 7 236 23 293 6.80e-71 219
MS.gene85573.t1 MTR_5g030710 48.252 286 90 7 8 236 51 335 1.53e-70 219
MS.gene85573.t1 MTR_8g067530 44.755 286 101 5 6 236 73 356 1.08e-67 213
MS.gene85573.t1 MTR_2g101500 43.894 303 95 8 8 236 25 326 2.53e-66 208
MS.gene85573.t1 MTR_5g067350 62.893 159 57 2 78 236 191 347 3.27e-66 208
MS.gene85573.t1 MTR_1g070830 46.429 224 79 6 8 224 12 201 1.05e-53 172
MS.gene85573.t1 MTR_1g076270 46.083 217 68 6 8 224 11 178 5.73e-52 166
MS.gene85573.t1 MTR_1g093350 46.083 217 68 6 8 224 11 178 5.73e-52 166
MS.gene85573.t1 MTR_1g040675 42.986 221 83 6 8 224 1 182 2.33e-49 160
MS.gene85573.t1 MTR_4g011880 41.304 230 75 7 1 228 1 172 2.05e-38 132
MS.gene85573.t1 MTR_1g069495 42.623 183 72 3 82 231 81 263 1.69e-37 132
MS.gene85573.t1 MTR_1g040675 39.303 201 79 6 8 204 1 162 5.16e-37 127
MS.gene85573.t1 MTR_2g102490 39.437 213 81 7 10 219 16 183 6.59e-37 129
MS.gene85573.t1 MTR_6g488150 40.331 181 69 5 5 161 12 177 2.49e-33 119
MS.gene85573.t1 MTR_8g014520 37.714 175 89 3 64 220 88 260 3.54e-29 110
MS.gene85573.t1 MTR_8g014520 37.714 175 89 3 64 220 88 260 3.65e-29 110
MS.gene85573.t1 MTR_2g100780 38.824 170 73 5 77 220 90 254 4.65e-28 107
MS.gene85573.t1 MTR_2g100780 38.824 170 73 5 77 220 90 254 7.79e-28 107
MS.gene85573.t1 MTR_5g067350 58.537 82 33 1 78 159 191 271 3.02e-25 100
MS.gene85573.t1 MTR_4g124300 32.867 143 67 4 81 221 69 184 3.12e-19 82.4
MS.gene85573.t1 MTR_1g085750 41.509 106 48 3 113 217 78 170 5.92e-17 76.3
MS.gene85573.t1 MTR_3g106850 26.950 141 83 3 83 221 88 210 6.71e-17 77.0
MS.gene85573.t1 MTR_4g115075 26.667 135 78 1 84 218 93 206 4.42e-15 71.6
MS.gene85573.t1 MTR_7g110790 39.604 101 47 4 118 217 68 155 2.53e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85573.t1 AT4G14550 75.000 236 44 4 8 236 1 228 9.70e-121 343
MS.gene85573.t1 AT3G23050 70.683 249 50 6 4 236 2 243 1.94e-117 335
MS.gene85573.t1 AT4G14550 74.107 224 43 4 8 224 1 216 1.62e-112 322
MS.gene85573.t1 AT1G04250 65.272 239 57 5 8 236 7 229 1.93e-103 299
MS.gene85573.t1 AT3G04730 64.050 242 67 4 8 236 2 236 1.16e-102 297
MS.gene85573.t1 AT4G14550 72.414 203 41 4 8 203 1 195 7.16e-98 284
MS.gene85573.t1 AT3G23050 67.593 216 48 5 4 204 2 210 8.95e-95 276
MS.gene85573.t1 AT4G29080 48.699 269 99 8 6 235 36 304 3.49e-71 220
MS.gene85573.t1 AT5G65670 44.964 278 102 6 8 236 61 336 1.50e-66 209
MS.gene85573.t1 AT5G65670 44.643 280 102 7 8 236 61 338 1.41e-64 204
MS.gene85573.t1 AT2G22670 52.804 214 80 5 41 235 107 318 3.50e-63 200
MS.gene85573.t1 AT2G22670 52.804 214 80 5 41 235 107 318 3.50e-63 200
MS.gene85573.t1 AT2G22670 52.804 214 80 5 41 235 124 335 5.32e-63 200
MS.gene85573.t1 AT4G14550 66.667 159 38 4 8 159 1 151 1.81e-62 193
MS.gene85573.t1 AT2G22670 51.869 214 80 6 41 235 107 316 6.32e-60 191
MS.gene85573.t1 AT2G22670 51.869 214 80 6 41 235 107 316 6.32e-60 191
MS.gene85573.t1 AT3G23050 60.694 173 46 5 4 161 2 167 1.83e-59 185
MS.gene85573.t1 AT1G04240 47.511 221 80 7 4 224 1 185 7.30e-55 174
MS.gene85573.t1 AT1G04240 46.875 224 83 7 1 224 98 285 4.97e-54 175
MS.gene85573.t1 AT5G43700 48.165 218 67 7 8 225 11 182 1.59e-52 168
MS.gene85573.t1 AT3G23030 45.161 217 64 6 8 224 9 170 3.51e-49 159
MS.gene85573.t1 AT3G23030 45.161 217 64 6 8 224 96 257 2.26e-48 160
MS.gene85573.t1 AT4G14560 43.056 216 67 5 6 221 5 164 6.97e-44 145
MS.gene85573.t1 AT1G15580 40.639 219 70 4 1 219 1 159 2.45e-43 144
MS.gene85573.t1 AT3G15540 40.086 232 95 7 6 231 4 197 7.25e-41 139
MS.gene85573.t1 AT2G33310 44.828 174 72 6 76 230 68 236 4.82e-39 135
MS.gene85573.t1 AT2G33310 44.828 174 72 6 76 230 68 236 4.82e-39 135
MS.gene85573.t1 AT2G33310 44.767 172 71 6 78 230 71 237 6.69e-38 132
MS.gene85573.t1 AT1G52830 38.813 219 96 6 6 224 4 184 8.81e-38 130
MS.gene85573.t1 AT4G28640 48.408 157 65 5 83 225 88 242 1.68e-35 126
MS.gene85573.t1 AT1G04550 41.477 176 76 3 76 231 62 230 2.35e-35 126
MS.gene85573.t1 AT4G28640 48.387 155 64 5 83 223 88 240 2.87e-35 126
MS.gene85573.t1 AT3G16500 38.095 231 108 8 11 220 36 252 4.74e-34 123
MS.gene85573.t1 AT4G28640 48.387 155 64 5 83 223 88 240 5.20e-34 124
MS.gene85573.t1 AT3G16500 38.095 231 108 8 11 220 36 252 7.28e-34 122
MS.gene85573.t1 AT5G25890 39.157 166 77 3 62 227 29 170 2.66e-30 111
MS.gene85573.t1 AT1G04100 40.719 167 70 4 85 224 95 259 7.52e-30 112
MS.gene85573.t1 AT1G51950 40.625 160 74 4 80 220 93 250 2.22e-28 108
MS.gene85573.t1 AT3G17600 32.877 146 68 4 75 217 36 154 2.19e-21 87.4
MS.gene85573.t1 AT2G46990 39.623 106 51 2 114 219 80 172 7.85e-19 81.3
MS.gene85573.t1 AT3G62100 38.889 108 53 2 110 217 74 168 1.62e-18 80.1
MS.gene85573.t1 AT2G46990 40.659 91 41 2 114 204 80 157 3.91e-14 68.2
MS.gene85573.t1 AT4G32280 23.944 213 105 6 50 232 64 249 1.04e-13 68.9
MS.gene85573.t1 AT1G80390 34.000 150 61 3 9 158 15 126 1.57e-13 65.9
MS.gene85573.t1 AT3G62100 37.895 95 46 2 110 204 74 155 2.06e-13 66.2
MS.gene85573.t1 AT4G32280 29.204 113 56 2 120 232 119 207 1.46e-12 65.1

Find 78 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAGGAGCTGAACATTT+TGG 0.275554 1.3:+54726917 None:intergenic
GGTGGTGGTGGCGGCGGCGG+TGG 0.280712 1.3:-54728035 MS.gene85573:CDS
ATATATATTATAGGTAACTA+TGG 0.289007 1.3:-54726497 MS.gene85573:intron
CTTCTCATTCAGATCTTCCT+TGG 0.341646 1.3:+54727929 None:intergenic
GGTGGTGGCGGCGGCGGTGG+AGG 0.343665 1.3:-54728032 MS.gene85573:CDS
TACTTAGCTGGTGGCTTAGC+AGG 0.347183 1.3:+54727873 None:intergenic
GGTGGCGGCGGCGGTGGAGG+TGG 0.350359 1.3:-54728029 MS.gene85573:CDS
TTGCATTTCTCCATTGCTCT+TGG 0.358710 1.3:+54725490 None:intergenic
GACAAAGCTCAGTCTCCTTC+AGG 0.370771 1.3:+54728069 None:intergenic
ATGAAAGGATCAGAAGCTAT+TGG 0.371063 1.3:-54726135 MS.gene85573:CDS
CCTGGTGGTGGTGGCGGCGG+CGG 0.379613 1.3:-54728038 MS.gene85573:CDS
GGCATCAGATAAATCTTTGT+AGG 0.380510 1.3:+54726944 None:intergenic
GTGGCTTAGCAGGGTCCTTA+AGG 0.389548 1.3:+54727883 None:intergenic
TACTGCTGCTGCATTTGTTA+AGG 0.392669 1.3:-54727021 MS.gene85573:CDS
CATGAATGAGAGCAAGTTGA+TGG 0.395903 1.3:-54726453 MS.gene85573:CDS
CTGCCTGGTGGTGGTGGCGG+CGG 0.419116 1.3:-54728041 MS.gene85573:CDS
TGAAAGGATCAGAAGCTATT+GGG 0.427068 1.3:-54726134 MS.gene85573:CDS
ATTGGGAAAACTTACTTAGC+TGG 0.432635 1.3:+54727861 None:intergenic
TCATGAAGTCTATCATTCCT+TGG 0.436607 1.3:+54726471 None:intergenic
GAGCTTTGTCTTGGTCTGCC+TGG 0.443783 1.3:-54728056 MS.gene85573:CDS
TTTGTTAAGGTTTCCATGGA+TGG 0.449811 1.3:-54727008 MS.gene85573:CDS
AAGGAGACTGAGCTTTGTCT+TGG 0.456647 1.3:-54728065 MS.gene85573:CDS
GGATCAGAAGCTATTGGGCT+TGG 0.459856 1.3:-54726129 MS.gene85573:intron
CTTGGTCTGCCTGGTGGTGG+TGG 0.460328 1.3:-54728047 MS.gene85573:CDS
CATGAAGTCTATCATTCCTT+GGG 0.461454 1.3:+54726472 None:intergenic
TATTTCAGGGCTCAAGTAGT+TGG 0.461914 1.3:-54727131 MS.gene85573:intron
TGTCTTGGTCTGCCTGGTGG+TGG 0.462328 1.3:-54728050 MS.gene85573:CDS
TATATATTATAGGTAACTAT+GGG 0.462994 1.3:-54726496 MS.gene85573:intron
AAAGGAGAAGACCCTCCTTA+AGG 0.463373 1.3:-54727898 MS.gene85573:CDS
GTCGCCATCCTTATCTTCAT+AGG 0.465608 1.3:+54726400 None:intergenic
GAAGAACATGATGGCACAAA+AGG 0.465863 1.3:-54727084 MS.gene85573:CDS
CCTCTCTTCGCAGAAGCCCT+TGG 0.474958 1.3:+54727990 None:intergenic
GCTTAGCAGGGTCCTTAAGG+AGG 0.489152 1.3:+54727886 None:intergenic
GGCCACCAGTGAGGTCATAC+AGG 0.498221 1.3:-54727106 MS.gene85573:CDS
GGTCTGCCTGGTGGTGGTGG+CGG 0.503771 1.3:-54728044 MS.gene85573:CDS
CCATCCTTATCTTCATAGGT+TGG 0.508321 1.3:+54726404 None:intergenic
CGGTGGAGGTGGTTCTGAGG+TGG 0.509616 1.3:-54728018 MS.gene85573:CDS
GAATGAGAAGAGTGCTTCAA+AGG 0.512968 1.3:-54727916 MS.gene85573:CDS
TGCATTTGTTAAGGTTTCCA+TGG 0.525650 1.3:-54727012 MS.gene85573:CDS
CCGCCGCCGCCACCACCACC+AGG 0.530029 1.3:+54728038 None:intergenic
TGTGCCAACCTATGAAGATA+AGG 0.537235 1.3:-54726408 MS.gene85573:CDS
TCAGGGCTCAAGTAGTTGGT+TGG 0.538535 1.3:-54727127 MS.gene85573:intron
ACTTAGCTGGTGGCTTAGCA+GGG 0.540758 1.3:+54727874 None:intergenic
TTCTTCCTGTATGACCTCAC+TGG 0.545123 1.3:+54727101 None:intergenic
AAGGTAAGGTGCTCCATCCA+TGG 0.548189 1.3:+54726995 None:intergenic
AAGTCAACCTTACGAAGGTA+AGG 0.557851 1.3:+54726981 None:intergenic
TGCTCGTGGGAGATGTCCCA+TGG 0.560169 1.3:-54726373 MS.gene85573:CDS
GTTCTGAGGTGGAAACTCCA+AGG 0.563503 1.3:-54728007 MS.gene85573:CDS
TGGAGCACCTTACCTTCGTA+AGG 0.564503 1.3:-54726988 MS.gene85573:CDS
CCAAGGGCTTCTGCGAAGAG+AGG 0.567370 1.3:-54727990 MS.gene85573:CDS
CATTTCAGCACCAAGAGCAA+TGG 0.570918 1.3:-54725500 MS.gene85573:intron
ATGTTCAGCTCCTTCACCAC+TGG 0.578252 1.3:-54726912 MS.gene85573:intron
TAATTAATTACCAGTGGTGA+AGG 0.579528 1.3:+54726902 None:intergenic
AATATGGCCACTATGGGGCA+TGG 0.587296 1.3:-54728098 MS.gene85573:CDS
CTTAGCAGGGTCCTTAAGGA+GGG 0.587502 1.3:+54727887 None:intergenic
GTTCAATCCATGCCCCATAG+TGG 0.588585 1.3:+54728091 None:intergenic
AAGCGTCTGCGCATAATGAA+AGG 0.596352 1.3:-54726150 MS.gene85573:CDS
GGATGGCGACTGGATGCTCG+TGG 0.596688 1.3:-54726387 MS.gene85573:CDS
ATGAAGATAAGGATGGCGAC+TGG 0.598557 1.3:-54726397 MS.gene85573:CDS
GCTATAGGAACTTACTCCCA+TGG 0.598945 1.3:+54726356 None:intergenic
TTCTGAGGTGGAAACTCCAA+GGG 0.603496 1.3:-54728006 MS.gene85573:CDS
GGGAAAACTTACTTAGCTGG+TGG 0.604797 1.3:+54727864 None:intergenic
CGGCGGTGGAGGTGGTTCTG+AGG 0.606000 1.3:-54728021 MS.gene85573:CDS
TTCCTGTATGACCTCACTGG+TGG 0.606534 1.3:+54727104 None:intergenic
ATAGGTAACTATGGGGCCCA+AGG 0.608548 1.3:-54726488 MS.gene85573:intron
GAAGCTTAATCTTCAAACCA+AGG 0.609730 1.3:-54727946 MS.gene85573:CDS
CTTTGTCTTGGTCTGCCTGG+TGG 0.610253 1.3:-54728053 MS.gene85573:CDS
CTATAGGAACTTACTCCCAT+GGG 0.622755 1.3:+54726357 None:intergenic
GGGGCATGGATTGAACCTGA+AGG 0.627746 1.3:-54728084 MS.gene85573:CDS
CCAACCTATGAAGATAAGGA+TGG 0.646142 1.3:-54726404 MS.gene85573:CDS
GCTCGTGGGAGATGTCCCAT+GGG 0.650152 1.3:-54726372 MS.gene85573:CDS
GTCATACAGGAAGAACATGA+TGG 0.666998 1.3:-54727093 MS.gene85573:CDS
GATGGCGACTGGATGCTCGT+GGG 0.667120 1.3:-54726386 MS.gene85573:CDS
AAAAGAATATGGCCACTATG+GGG 0.689548 1.3:-54728103 None:intergenic
TAGTTGGTTGGCCACCAGTG+AGG 0.691007 1.3:-54727115 MS.gene85573:CDS
ACAAAAGGTTAACAATACTG+AGG 0.707970 1.3:-54727069 MS.gene85573:CDS
TTGTCAAGTCAACCTTACGA+AGG 0.716471 1.3:+54726976 None:intergenic
ATATATTATAGGTAACTATG+GGG 0.717921 1.3:-54726495 MS.gene85573:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTTATATATATTAT+AGG - chr1.3:54727066-54727085 MS.gene85573:CDS 0.0%
!! TTATTATTAATATTATTATA+AGG - chr1.3:54726923-54726942 MS.gene85573:CDS 0.0%
!! AAATAATATTTACATTATGT+TGG + chr1.3:54727874-54727893 None:intergenic 10.0%
!! ATGATAATTTAAATATTTGA+AGG + chr1.3:54727824-54727843 None:intergenic 10.0%
!! TGTAAATATTATTTAATAGT+TGG - chr1.3:54727880-54727899 MS.gene85573:CDS 10.0%
!! TTAAAAAATTGCATAAAATT+TGG + chr1.3:54726359-54726378 None:intergenic 10.0%
!!! ATTATTAATTTGAAGAAAAA+TGG + chr1.3:54726281-54726300 None:intergenic 10.0%
!! AAAGAATAATTGAGATTTAT+AGG - chr1.3:54726391-54726410 MS.gene85573:CDS 15.0%
!! AAGAATAATTGAGATTTATA+GGG - chr1.3:54726392-54726411 MS.gene85573:CDS 15.0%
!! AATATGAAAAAACGATATAA+GGG + chr1.3:54726060-54726079 None:intergenic 15.0%
!! AGATTAATTATTATCATCTT+GGG - chr1.3:54726997-54727016 MS.gene85573:CDS 15.0%
!! ATATATATTATAGGTAACTA+TGG - chr1.3:54727075-54727094 MS.gene85573:CDS 15.0%
!! TAGATTAATTATTATCATCT+TGG - chr1.3:54726996-54727015 MS.gene85573:CDS 15.0%
!! TATATATTATAGGTAACTAT+GGG - chr1.3:54727076-54727095 MS.gene85573:CDS 15.0%
!!! GTTTTTTTTTATAACTTTCT+TGG - chr1.3:54725761-54725780 MS.gene85573:intron 15.0%
!!! TGGTTATTTAAATTTTTTGA+AGG - chr1.3:54727381-54727400 MS.gene85573:intron 15.0%
!!! TTCAATGATTTATTTTTTGT+TGG + chr1.3:54727682-54727701 None:intergenic 15.0%
!! AACAAACATATATATGTACT+TGG - chr1.3:54727314-54727333 MS.gene85573:intron 20.0%
!! AAGTACATATATATGTTTGT+TGG + chr1.3:54727315-54727334 None:intergenic 20.0%
!! AATAACCAATGTTAATTTCA+TGG + chr1.3:54727369-54727388 None:intergenic 20.0%
!! AATAAGAAGATAGAAAAGAA+AGG - chr1.3:54725965-54725984 MS.gene85573:intron 20.0%
!! AATATTACAAATACAAGCAT+AGG + chr1.3:54726714-54726733 None:intergenic 20.0%
!! AATTTACTAAACAAGCATTA+TGG - chr1.3:54726102-54726121 MS.gene85573:intron 20.0%
!! AGTACATATATATGTTTGTT+GGG + chr1.3:54727314-54727333 None:intergenic 20.0%
!! ATAAACTATATCAAATAGCT+AGG + chr1.3:54726850-54726869 None:intergenic 20.0%
!! ATATATTATAGGTAACTATG+GGG - chr1.3:54727077-54727096 MS.gene85573:CDS 20.0%
!! ATATGAAAAAACGATATAAG+GGG + chr1.3:54726059-54726078 None:intergenic 20.0%
!! ATTGAATTGAAAATCTTAGA+CGG - chr1.3:54727696-54727715 MS.gene85573:intron 20.0%
!! CAATATGAAAAAACGATATA+AGG + chr1.3:54726061-54726080 None:intergenic 20.0%
!! TATACTATTTGTATATGAGT+TGG - chr1.3:54726029-54726048 MS.gene85573:intron 20.0%
!!! AATATTTTGTACTTAACTCA+TGG - chr1.3:54727497-54727516 MS.gene85573:intron 20.0%
!!! TTGTTTAGTAAATGTTGTTT+TGG + chr1.3:54725818-54725837 None:intergenic 20.0%
!!! TTTATTTTTTGTTGGTCTTA+AGG + chr1.3:54727674-54727693 None:intergenic 20.0%
!!! TTTCTTTTCTATCTTCTTAT+TGG + chr1.3:54725966-54725985 None:intergenic 20.0%
!!! TTTTTTTCTATCTTCCATTT+GGG + chr1.3:54726137-54726156 None:intergenic 20.0%
!!! TTTTTTTTCTATCTTCCATT+TGG + chr1.3:54726138-54726157 None:intergenic 20.0%
! ATCAAAATTACAAGCATTTG+TGG + chr1.3:54726235-54726254 None:intergenic 25.0%
! TAGTACTAATTAATTACCAG+TGG + chr1.3:54726679-54726698 None:intergenic 25.0%
! TCAAAATTACAAGCATTTGT+GGG + chr1.3:54726234-54726253 None:intergenic 25.0%
! TTCATGGATGTGTAAATATA+TGG + chr1.3:54727353-54727372 None:intergenic 25.0%
!! GTACATATATATGTTTGTTG+GGG + chr1.3:54727313-54727332 None:intergenic 25.0%
!!! ACTTTTTTTTGTTGTGATGA+TGG + chr1.3:54726902-54726921 None:intergenic 25.0%
!!! ATTTTTTGAAGGATGTTTGT+TGG - chr1.3:54727392-54727411 MS.gene85573:intron 25.0%
!!! TATAAGGTTTTAGATCTTGA+AGG - chr1.3:54726939-54726958 MS.gene85573:CDS 25.0%
!!! TTATGCAATTTTTTAAGCCT+TGG - chr1.3:54726363-54726382 MS.gene85573:intron 25.0%
AAGCATGCAAGTACTTTAAT+TGG + chr1.3:54725732-54725751 None:intergenic 30.0%
ACAAAAGGTTAACAATACTG+AGG - chr1.3:54726503-54726522 MS.gene85573:intron 30.0%
AGCATGCAAGTACTTTAATT+GGG + chr1.3:54725731-54725750 None:intergenic 30.0%
ATATTTGTACAACTGTTCTG+TGG - chr1.3:54725862-54725881 MS.gene85573:intron 30.0%
CACATCCATGAAATTAACAT+TGG - chr1.3:54727361-54727380 MS.gene85573:intron 30.0%
CTATATCAAATAGCTAGGTA+TGG + chr1.3:54726845-54726864 None:intergenic 30.0%
GGCTACTTATTCTAACTTAT+TGG - chr1.3:54728034-54728053 MS.gene85573:CDS 30.0%
TAATTAATTACCAGTGGTGA+AGG + chr1.3:54726673-54726692 None:intergenic 30.0%
TGATTGTAGTATATAGTAGC+TGG + chr1.3:54727259-54727278 None:intergenic 30.0%
TGGATGTGTAAATATATGGT+TGG + chr1.3:54727349-54727368 None:intergenic 30.0%
! CAATTATTCTTTTCTCTCCA+AGG + chr1.3:54726383-54726402 None:intergenic 30.0%
! TGGTCTTAAGGATTAAGTTT+AGG + chr1.3:54727662-54727681 None:intergenic 30.0%
AATAGCTAGGTATGGACTTT+AGG + chr1.3:54726837-54726856 None:intergenic 35.0%
AGAGAGAGAAAAAAGAAGAG+AGG + chr1.3:54725932-54725951 None:intergenic 35.0%
ATGAAAGGATCAGAAGCTAT+TGG - chr1.3:54727437-54727456 MS.gene85573:intron 35.0%
ATTGGGAAAACTTACTTAGC+TGG + chr1.3:54725714-54725733 None:intergenic 35.0%
CATGAAGTCTATCATTCCTT+GGG + chr1.3:54727103-54727122 None:intergenic 35.0%
GAAGCTTAATCTTCAAACCA+AGG - chr1.3:54725626-54725645 MS.gene85573:intron 35.0%
GGCATCAGATAAATCTTTGT+AGG + chr1.3:54726631-54726650 None:intergenic 35.0%
TAATCTTTCAGCATTCTCTC+TGG + chr1.3:54726769-54726788 None:intergenic 35.0%
TAGTATATAGTAGCTGGAGA+TGG + chr1.3:54727253-54727272 None:intergenic 35.0%
TATGGATTCTCAAACCCAAA+TGG - chr1.3:54726120-54726139 MS.gene85573:intron 35.0%
TCATGAAGTCTATCATTCCT+TGG + chr1.3:54727104-54727123 None:intergenic 35.0%
TGAAAGGATCAGAAGCTATT+GGG - chr1.3:54727438-54727457 MS.gene85573:intron 35.0%
TGCATCAAGTATAATGCAAG+TGG + chr1.3:54727610-54727629 None:intergenic 35.0%
TTTAGATCTTGAAGGATGCA+TGG - chr1.3:54726947-54726966 MS.gene85573:CDS 35.0%
TTTGTTAAGGTTTCCATGGA+TGG - chr1.3:54726564-54726583 MS.gene85573:intron 35.0%
! TAACTCATGGAAGTATGCTT+TGG - chr1.3:54727510-54727529 MS.gene85573:intron 35.0%
! TGCATTTGTTAAGGTTTCCA+TGG - chr1.3:54726560-54726579 MS.gene85573:intron 35.0%
AAGTCAACCTTACGAAGGTA+AGG + chr1.3:54726594-54726613 None:intergenic 40.0%
ACAAAATGACACGCACACAA+GGG + chr1.3:54728014-54728033 None:intergenic 40.0%
CCAACCTATGAAGATAAGGA+TGG - chr1.3:54727168-54727187 MS.gene85573:intron 40.0%
CCATCCTTATCTTCATAGGT+TGG + chr1.3:54727171-54727190 None:intergenic 40.0%
CTATAGGAACTTACTCCCAT+GGG + chr1.3:54727218-54727237 None:intergenic 40.0%
CTTCTCATTCAGATCTTCCT+TGG + chr1.3:54725646-54725665 None:intergenic 40.0%
GAAGAACATGATGGCACAAA+AGG - chr1.3:54726488-54726507 MS.gene85573:intron 40.0%
GTCATACAGGAAGAACATGA+TGG - chr1.3:54726479-54726498 MS.gene85573:CDS 40.0%
TATATAGTAGCTGGAGATGG+AGG + chr1.3:54727250-54727269 None:intergenic 40.0%
TATTTCAGGGCTCAAGTAGT+TGG - chr1.3:54726441-54726460 MS.gene85573:CDS 40.0%
TGTGCCAACCTATGAAGATA+AGG - chr1.3:54727164-54727183 MS.gene85573:intron 40.0%
TTGCATTTCTCCATTGCTCT+TGG + chr1.3:54728085-54728104 None:intergenic 40.0%
TTGTCAAGTCAACCTTACGA+AGG + chr1.3:54726599-54726618 None:intergenic 40.0%
! AGCATTCTCTCTGGTTTAGA+TGG + chr1.3:54726760-54726779 None:intergenic 40.0%
! CATGAATGAGAGCAAGTTGA+TGG - chr1.3:54727119-54727138 MS.gene85573:CDS 40.0%
! CATTCTCTCTGGTTTAGATG+GGG + chr1.3:54726758-54726777 None:intergenic 40.0%
! GCATTCTCTCTGGTTTAGAT+GGG + chr1.3:54726759-54726778 None:intergenic 40.0%
! TACTGCTGCTGCATTTGTTA+AGG - chr1.3:54726551-54726570 MS.gene85573:intron 40.0%
!! GAATGAGAAGAGTGCTTCAA+AGG - chr1.3:54725656-54725675 MS.gene85573:intron 40.0%
AAAATGACACGCACACAAGG+GGG + chr1.3:54728012-54728031 None:intergenic 45.0%
AAAGGAGAAGACCCTCCTTA+AGG - chr1.3:54725674-54725693 MS.gene85573:intron 45.0%
AAGCGTCTGCGCATAATGAA+AGG - chr1.3:54727422-54727441 MS.gene85573:intron 45.0%
ATGAAGATAAGGATGGCGAC+TGG - chr1.3:54727175-54727194 MS.gene85573:intron 45.0%
ATGGAGGTTGGATGAGCTAT+AGG + chr1.3:54727234-54727253 None:intergenic 45.0%
CAAAATGACACGCACACAAG+GGG + chr1.3:54728013-54728032 None:intergenic 45.0%
CACAAAATGACACGCACACA+AGG + chr1.3:54728015-54728034 None:intergenic 45.0%
CATTTCAGCACCAAGAGCAA+TGG - chr1.3:54728072-54728091 MS.gene85573:CDS 45.0%
GCTATAGGAACTTACTCCCA+TGG + chr1.3:54727219-54727238 None:intergenic 45.0%
GGGAAAACTTACTTAGCTGG+TGG + chr1.3:54725711-54725730 None:intergenic 45.0%
GTCGCCATCCTTATCTTCAT+AGG + chr1.3:54727175-54727194 None:intergenic 45.0%
TTCTTCCTGTATGACCTCAC+TGG + chr1.3:54726474-54726493 None:intergenic 45.0%
! AAGGAGACTGAGCTTTGTCT+TGG - chr1.3:54725507-54725526 MS.gene85573:intron 45.0%
! GGTGAAGGAGCTGAACATTT+TGG + chr1.3:54726658-54726677 None:intergenic 45.0%
!! TTCTGAGGTGGAAACTCCAA+GGG - chr1.3:54725566-54725585 MS.gene85573:intron 45.0%
!!! CTTGTGTGCGTGTCATTTTG+TGG - chr1.3:54728013-54728032 MS.gene85573:CDS 45.0%
!!! GGAGCTGAACATTTTGGCTA+AGG + chr1.3:54726652-54726671 None:intergenic 45.0%
!! ATTATATTAATAATATTTCA+GGG - chr1.3:54726428-54726447 MS.gene85573:CDS 5.0%
!! ATTTGTAATATTTATATATA+TGG - chr1.3:54726722-54726741 MS.gene85573:intron 5.0%
!! TATTATATTAATAATATTTC+AGG - chr1.3:54726427-54726446 MS.gene85573:CDS 5.0%
AAATGACACGCACACAAGGG+GGG + chr1.3:54728011-54728030 None:intergenic 50.0%
ACTTAGCTGGTGGCTTAGCA+GGG + chr1.3:54725701-54725720 None:intergenic 50.0%
AGGATGCATGGCGATTGTTG+AGG - chr1.3:54726959-54726978 MS.gene85573:CDS 50.0%
ATAGGTAACTATGGGGCCCA+AGG - chr1.3:54727084-54727103 MS.gene85573:CDS 50.0%
ATGTTCAGCTCCTTCACCAC+TGG - chr1.3:54726660-54726679 MS.gene85573:intron 50.0%
CTTAGCAGGGTCCTTAAGGA+GGG + chr1.3:54725688-54725707 None:intergenic 50.0%
GACAAAGCTCAGTCTCCTTC+AGG + chr1.3:54725506-54725525 None:intergenic 50.0%
GGATCAGAAGCTATTGGGCT+TGG - chr1.3:54727443-54727462 MS.gene85573:intron 50.0%
GTTCAATCCATGCCCCATAG+TGG + chr1.3:54725484-54725503 None:intergenic 50.0%
TACTTAGCTGGTGGCTTAGC+AGG + chr1.3:54725702-54725721 None:intergenic 50.0%
TAGTAGCTGGAGATGGAGGT+TGG + chr1.3:54727246-54727265 None:intergenic 50.0%
TCAGGGCTCAAGTAGTTGGT+TGG - chr1.3:54726445-54726464 MS.gene85573:CDS 50.0%
TTCCTGTATGACCTCACTGG+TGG + chr1.3:54726471-54726490 None:intergenic 50.0%
! AAGGTAAGGTGCTCCATCCA+TGG + chr1.3:54726580-54726599 None:intergenic 50.0%
! TGGAGCACCTTACCTTCGTA+AGG - chr1.3:54726584-54726603 MS.gene85573:intron 50.0%
!! GTTCTGAGGTGGAAACTCCA+AGG - chr1.3:54725565-54725584 MS.gene85573:intron 50.0%
CTTTGTCTTGGTCTGCCTGG+TGG - chr1.3:54725519-54725538 MS.gene85573:intron 55.0%
GCTTAGCAGGGTCCTTAAGG+AGG + chr1.3:54725689-54725708 None:intergenic 55.0%
GTGGCTTAGCAGGGTCCTTA+AGG + chr1.3:54725692-54725711 None:intergenic 55.0%
! GAGCTTTGTCTTGGTCTGCC+TGG - chr1.3:54725516-54725535 MS.gene85573:intron 55.0%
! GGGGCATGGATTGAACCTGA+AGG - chr1.3:54725488-54725507 MS.gene85573:CDS 55.0%
! TAGTTGGTTGGCCACCAGTG+AGG - chr1.3:54726457-54726476 MS.gene85573:CDS 55.0%
CCAAGGGCTTCTGCGAAGAG+AGG - chr1.3:54725582-54725601 MS.gene85573:intron 60.0%
CCTCTCTTCGCAGAAGCCCT+TGG + chr1.3:54725585-54725604 None:intergenic 60.0%
GATGGCGACTGGATGCTCGT+GGG - chr1.3:54727186-54727205 MS.gene85573:intron 60.0%
GCACACAAGGGGGGACTCAA+GGG + chr1.3:54728002-54728021 None:intergenic 60.0%
GCTCGTGGGAGATGTCCCAT+GGG - chr1.3:54727200-54727219 MS.gene85573:intron 60.0%
GGCCACCAGTGAGGTCATAC+AGG - chr1.3:54726466-54726485 MS.gene85573:CDS 60.0%
TGCTCGTGGGAGATGTCCCA+TGG - chr1.3:54727199-54727218 MS.gene85573:intron 60.0%
TGTCTTGGTCTGCCTGGTGG+TGG - chr1.3:54725522-54725541 MS.gene85573:intron 60.0%
CGCACACAAGGGGGGACTCA+AGG + chr1.3:54728003-54728022 None:intergenic 65.0%
GGATGGCGACTGGATGCTCG+TGG - chr1.3:54727185-54727204 MS.gene85573:intron 65.0%
!! CGGTGGAGGTGGTTCTGAGG+TGG - chr1.3:54725554-54725573 MS.gene85573:intron 65.0%
!! CTTGGTCTGCCTGGTGGTGG+TGG - chr1.3:54725525-54725544 MS.gene85573:intron 65.0%
! CGGCGGTGGAGGTGGTTCTG+AGG - chr1.3:54725551-54725570 MS.gene85573:intron 70.0%
!! GGTCTGCCTGGTGGTGGTGG+CGG - chr1.3:54725528-54725547 MS.gene85573:intron 70.0%
!! CTGCCTGGTGGTGGTGGCGG+CGG - chr1.3:54725531-54725550 MS.gene85573:intron 75.0%
!!! CCTGGTGGTGGTGGCGGCGG+CGG - chr1.3:54725534-54725553 MS.gene85573:intron 80.0%
! CCGCCGCCGCCACCACCACC+AGG + chr1.3:54725537-54725556 None:intergenic 85.0%
!! GGTGGCGGCGGCGGTGGAGG+TGG - chr1.3:54725543-54725562 MS.gene85573:intron 85.0%
!!! GGTGGTGGCGGCGGCGGTGG+AGG - chr1.3:54725540-54725559 MS.gene85573:intron 85.0%
!!! GGTGGTGGTGGCGGCGGCGG+TGG - chr1.3:54725537-54725556 MS.gene85573:intron 85.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 54725477 54728117 54725477 ID=MS.gene85573
chr1.3 mRNA 54725477 54728117 54725477 ID=MS.gene85573.t1;Parent=MS.gene85573
chr1.3 exon 54727876 54728117 54727876 ID=MS.gene85573.t1.exon1;Parent=MS.gene85573.t1
chr1.3 CDS 54727876 54728117 54727876 ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1
chr1.3 exon 54726913 54727145 54726913 ID=MS.gene85573.t1.exon2;Parent=MS.gene85573.t1
chr1.3 CDS 54726913 54727145 54726913 ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1
chr1.3 exon 54726371 54726506 54726371 ID=MS.gene85573.t1.exon3;Parent=MS.gene85573.t1
chr1.3 CDS 54726371 54726506 54726371 ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1
chr1.3 exon 54726130 54726191 54726130 ID=MS.gene85573.t1.exon4;Parent=MS.gene85573.t1
chr1.3 CDS 54726130 54726191 54726130 ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1
chr1.3 exon 54725477 54725514 54725477 ID=MS.gene85573.t1.exon5;Parent=MS.gene85573.t1
chr1.3 CDS 54725477 54725514 54725477 ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1
Gene Sequence

>MS.gene85573

ATGGCCACTATGGGGCATGGATTGAACCTGAAGGAGACTGAGCTTTGTCTTGGTCTGCCTGGTGGTGGTGGCGGCGGCGGTGGAGGTGGTTCTGAGGTGGAAACTCCAAGGGCTTCTGCGAAGAGAGGTTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAAACCAAGGAAGATCTGAATGAGAAGAGTGCTTCAAAGGAGAAGACCCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGTAAGTTTTCCCAATTAAAGTACTTGCATGCTTTCTTGTCTAGTTTTTTTTTATAACTTTCTTGGATCTAGCATTATAGATTTCACTTTTTGAACACCAAAACAACATTTACTAAACAAGCACGTATTTACTTATAAGAAATGATATTTGTACAACTGTTCTGTGGTAATTTTTTGACAATTTTCTCTCAGTCACGTTATGTTAATATTTCCTCTCTTCTTTTTTCTCTCTCTATTTTTTTTTACCAATAAGAAGATAGAAAAGAAAGGTTGTCATAAAATAGTTGTATAAATGTTATTACATTTACATTTATACTATTTGTATATGAGTTGGAGTACCCCTTATATCGTTTTTTCATATTGTACTTTGTTGTTCAAACGCATAATTTACTAAACAAGCATTATGGATTCTCAAACCCAAATGGAAGATAGAAAAAAAAGTGATAAGTTGATATATGCAACATCTTATAATGTTTTTTATAAGTAATTTTTTTATTAATTGAAATTCTCTAACCCACAAATGCTTGTAATTTTGATGTTCTCTTTTTCTTTTCTTTTTTCCATTTTTCTTCAAATTAATAATATATGTTTTCTTAGAGCTGCAGTATATAGTTTATAGTTTGCATGTATACGAGTTTCCAAATTTTATGCAATTTTTTAAGCCTTGGAGAGAAAAGAATAATTGAGATTTATAGGGATTTGAAATGAATATTATATTAATAATATTTCAGGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAACAATACTGAGGACACTGAGAAGACAACAAGTAACACTACTGCTGCTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTGACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAATTAATTAGTACTACATTAAAAATCTCCTATGCTTGTATTTGTAATATTTATATATATGGTTGTTTCAAACCCCATCTAAACCAGAGAGAATGCTGAAAGATTAATCTCTCGAGTCACGTAGAATCACACTAGATAGTAAAACTTTCTTCCTAAAGTCCATACCTAGCTATTTGATATAGTTTATTAATAAATCAGTATATAGTATATTGAAGACCATCATCACAACAAAAAAAAGTATTATTATTAATATTATTATAAGGTTTTAGATCTTGAAGGATGCATGGCGATTGTTGAGGATGCATGTGCTAGTTAGATTAATTATTATCATCTTGGGATTGTTACATTCTAGATTCATGATTAATTTGAGTGATTAATTAATTTATTAATTTATATATATTATAGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGTAAGTTCCTATAGCTCATCCAACCTCCATCTCCAGCTACTATATACTACAATCATTAATTTATTTTTATATCTATATAAATTAGTCCCCAACAAACATATATATGTACTTGGTTTAATTTACCAACCATATATTTACACATCCATGAAATTAACATTGGTTATTTAAATTTTTTGAAGGATGTTTGTTGGATCATGCAAGCGTCTGCGCATAATGAAAGGATCAGAAGCTATTGGGCTTGGTATGAATCTTTCTATATATCTTACTTGCATCAATATTTTGTACTTAACTCATGGAAGTATGCTTTGGAATTACTAATTCTATATATTATAAGTATGAATTGAACTTAGATAGTGTCAAAATTACTCGACTCTATGCACTAACCACTTGCATTATACTTGATGCACTAATAATTTTCAATAACATTAAGTAGAACCTAAACTTAATCCTTAAGACCAACAAAAAATAAATCATTGAATTGAAAATCTTAGACGGAAATGAAGTTCACGAAATTTAATGTGATTTTAAAACTACTTGATATATACTTCATTTCATAATTTAATTTTAAATATGTATTTACTATTAAATTATTATAAACCTTCAAATATTTAAATTATCATGACTAGTTGTGTTTTGTGTACACATGACCAACATAATGTAAATATTATTTAATAGTTGGAATTATATATTTAAAATTATTACAAGTTTTTTTAGTAACATAAAGTTATTAAAAAATACTAAATGTTTTACTTGTACTCTATATAATTCATTCACACCCTTGAGTCCCCCCTTGTGTGCGTGTCATTTTGTGGCTACTTATTCTAACTTATTGGCATCATTTTTATGTACATTTCAGCACCAAGAGCAATGGAGAAATGCAAAAACAGAAGCTGA

Protein sequence

>MS.gene85573.t1

MATMGHGLNLKETELCLGLPGGGGGGGGGGSEVETPRASAKRGFSETVDLKLNLQTKEDLNEKSASKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNTEDTEKTTSNTTAAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS