Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85573.t1 | XP_003591806.1 | 99.2 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 9.80E-120 | 439.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85573.t1 | Q38832 | 73.7 | 236 | 47 | 4 | 8 | 236 | 1 | 228 | 4.2e-87 | 322.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85573.t1 | G7I476 | 99.2 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 7.1e-120 | 439.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene85573.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85573 | MS.gene07402 | PPI |
MS.gene85573 | MS.gene69940 | PPI |
MS.gene062256 | MS.gene85573 | PPI |
MS.gene44001 | MS.gene85573 | PPI |
MS.gene005133 | MS.gene85573 | PPI |
MS.gene85573 | MS.gene70825 | PPI |
MS.gene85573 | MS.gene004875 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85573.t1 | MTR_1g093240 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 2.42e-176 | 484 |
MS.gene85573.t1 | MTR_1g093240 | 99.554 | 224 | 1 | 0 | 1 | 224 | 1 | 224 | 5.12e-166 | 457 |
MS.gene85573.t1 | MTR_1g093240 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 2.54e-150 | 417 |
MS.gene85573.t1 | MTR_1g070520 | 68.619 | 239 | 51 | 7 | 12 | 236 | 17 | 245 | 2.28e-102 | 297 |
MS.gene85573.t1 | MTR_7g096090 | 63.710 | 248 | 67 | 5 | 6 | 236 | 9 | 250 | 7.87e-98 | 286 |
MS.gene85573.t1 | MTR_1g080860 | 63.115 | 244 | 70 | 6 | 8 | 236 | 15 | 253 | 1.96e-96 | 282 |
MS.gene85573.t1 | MTR_1g080860 | 61.638 | 232 | 69 | 6 | 8 | 224 | 15 | 241 | 5.40e-87 | 258 |
MS.gene85573.t1 | MTR_6g488150 | 50.973 | 257 | 85 | 6 | 6 | 236 | 13 | 254 | 8.32e-79 | 238 |
MS.gene85573.t1 | MTR_8g103030 | 48.364 | 275 | 93 | 8 | 7 | 236 | 23 | 293 | 6.80e-71 | 219 |
MS.gene85573.t1 | MTR_5g030710 | 48.252 | 286 | 90 | 7 | 8 | 236 | 51 | 335 | 1.53e-70 | 219 |
MS.gene85573.t1 | MTR_8g067530 | 44.755 | 286 | 101 | 5 | 6 | 236 | 73 | 356 | 1.08e-67 | 213 |
MS.gene85573.t1 | MTR_2g101500 | 43.894 | 303 | 95 | 8 | 8 | 236 | 25 | 326 | 2.53e-66 | 208 |
MS.gene85573.t1 | MTR_5g067350 | 62.893 | 159 | 57 | 2 | 78 | 236 | 191 | 347 | 3.27e-66 | 208 |
MS.gene85573.t1 | MTR_1g070830 | 46.429 | 224 | 79 | 6 | 8 | 224 | 12 | 201 | 1.05e-53 | 172 |
MS.gene85573.t1 | MTR_1g076270 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 5.73e-52 | 166 |
MS.gene85573.t1 | MTR_1g093350 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 5.73e-52 | 166 |
MS.gene85573.t1 | MTR_1g040675 | 42.986 | 221 | 83 | 6 | 8 | 224 | 1 | 182 | 2.33e-49 | 160 |
MS.gene85573.t1 | MTR_4g011880 | 41.304 | 230 | 75 | 7 | 1 | 228 | 1 | 172 | 2.05e-38 | 132 |
MS.gene85573.t1 | MTR_1g069495 | 42.623 | 183 | 72 | 3 | 82 | 231 | 81 | 263 | 1.69e-37 | 132 |
MS.gene85573.t1 | MTR_1g040675 | 39.303 | 201 | 79 | 6 | 8 | 204 | 1 | 162 | 5.16e-37 | 127 |
MS.gene85573.t1 | MTR_2g102490 | 39.437 | 213 | 81 | 7 | 10 | 219 | 16 | 183 | 6.59e-37 | 129 |
MS.gene85573.t1 | MTR_6g488150 | 40.331 | 181 | 69 | 5 | 5 | 161 | 12 | 177 | 2.49e-33 | 119 |
MS.gene85573.t1 | MTR_8g014520 | 37.714 | 175 | 89 | 3 | 64 | 220 | 88 | 260 | 3.54e-29 | 110 |
MS.gene85573.t1 | MTR_8g014520 | 37.714 | 175 | 89 | 3 | 64 | 220 | 88 | 260 | 3.65e-29 | 110 |
MS.gene85573.t1 | MTR_2g100780 | 38.824 | 170 | 73 | 5 | 77 | 220 | 90 | 254 | 4.65e-28 | 107 |
MS.gene85573.t1 | MTR_2g100780 | 38.824 | 170 | 73 | 5 | 77 | 220 | 90 | 254 | 7.79e-28 | 107 |
MS.gene85573.t1 | MTR_5g067350 | 58.537 | 82 | 33 | 1 | 78 | 159 | 191 | 271 | 3.02e-25 | 100 |
MS.gene85573.t1 | MTR_4g124300 | 32.867 | 143 | 67 | 4 | 81 | 221 | 69 | 184 | 3.12e-19 | 82.4 |
MS.gene85573.t1 | MTR_1g085750 | 41.509 | 106 | 48 | 3 | 113 | 217 | 78 | 170 | 5.92e-17 | 76.3 |
MS.gene85573.t1 | MTR_3g106850 | 26.950 | 141 | 83 | 3 | 83 | 221 | 88 | 210 | 6.71e-17 | 77.0 |
MS.gene85573.t1 | MTR_4g115075 | 26.667 | 135 | 78 | 1 | 84 | 218 | 93 | 206 | 4.42e-15 | 71.6 |
MS.gene85573.t1 | MTR_7g110790 | 39.604 | 101 | 47 | 4 | 118 | 217 | 68 | 155 | 2.53e-14 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85573.t1 | AT4G14550 | 75.000 | 236 | 44 | 4 | 8 | 236 | 1 | 228 | 9.70e-121 | 343 |
MS.gene85573.t1 | AT3G23050 | 70.683 | 249 | 50 | 6 | 4 | 236 | 2 | 243 | 1.94e-117 | 335 |
MS.gene85573.t1 | AT4G14550 | 74.107 | 224 | 43 | 4 | 8 | 224 | 1 | 216 | 1.62e-112 | 322 |
MS.gene85573.t1 | AT1G04250 | 65.272 | 239 | 57 | 5 | 8 | 236 | 7 | 229 | 1.93e-103 | 299 |
MS.gene85573.t1 | AT3G04730 | 64.050 | 242 | 67 | 4 | 8 | 236 | 2 | 236 | 1.16e-102 | 297 |
MS.gene85573.t1 | AT4G14550 | 72.414 | 203 | 41 | 4 | 8 | 203 | 1 | 195 | 7.16e-98 | 284 |
MS.gene85573.t1 | AT3G23050 | 67.593 | 216 | 48 | 5 | 4 | 204 | 2 | 210 | 8.95e-95 | 276 |
MS.gene85573.t1 | AT4G29080 | 48.699 | 269 | 99 | 8 | 6 | 235 | 36 | 304 | 3.49e-71 | 220 |
MS.gene85573.t1 | AT5G65670 | 44.964 | 278 | 102 | 6 | 8 | 236 | 61 | 336 | 1.50e-66 | 209 |
MS.gene85573.t1 | AT5G65670 | 44.643 | 280 | 102 | 7 | 8 | 236 | 61 | 338 | 1.41e-64 | 204 |
MS.gene85573.t1 | AT2G22670 | 52.804 | 214 | 80 | 5 | 41 | 235 | 107 | 318 | 3.50e-63 | 200 |
MS.gene85573.t1 | AT2G22670 | 52.804 | 214 | 80 | 5 | 41 | 235 | 107 | 318 | 3.50e-63 | 200 |
MS.gene85573.t1 | AT2G22670 | 52.804 | 214 | 80 | 5 | 41 | 235 | 124 | 335 | 5.32e-63 | 200 |
MS.gene85573.t1 | AT4G14550 | 66.667 | 159 | 38 | 4 | 8 | 159 | 1 | 151 | 1.81e-62 | 193 |
MS.gene85573.t1 | AT2G22670 | 51.869 | 214 | 80 | 6 | 41 | 235 | 107 | 316 | 6.32e-60 | 191 |
MS.gene85573.t1 | AT2G22670 | 51.869 | 214 | 80 | 6 | 41 | 235 | 107 | 316 | 6.32e-60 | 191 |
MS.gene85573.t1 | AT3G23050 | 60.694 | 173 | 46 | 5 | 4 | 161 | 2 | 167 | 1.83e-59 | 185 |
MS.gene85573.t1 | AT1G04240 | 47.511 | 221 | 80 | 7 | 4 | 224 | 1 | 185 | 7.30e-55 | 174 |
MS.gene85573.t1 | AT1G04240 | 46.875 | 224 | 83 | 7 | 1 | 224 | 98 | 285 | 4.97e-54 | 175 |
MS.gene85573.t1 | AT5G43700 | 48.165 | 218 | 67 | 7 | 8 | 225 | 11 | 182 | 1.59e-52 | 168 |
MS.gene85573.t1 | AT3G23030 | 45.161 | 217 | 64 | 6 | 8 | 224 | 9 | 170 | 3.51e-49 | 159 |
MS.gene85573.t1 | AT3G23030 | 45.161 | 217 | 64 | 6 | 8 | 224 | 96 | 257 | 2.26e-48 | 160 |
MS.gene85573.t1 | AT4G14560 | 43.056 | 216 | 67 | 5 | 6 | 221 | 5 | 164 | 6.97e-44 | 145 |
MS.gene85573.t1 | AT1G15580 | 40.639 | 219 | 70 | 4 | 1 | 219 | 1 | 159 | 2.45e-43 | 144 |
MS.gene85573.t1 | AT3G15540 | 40.086 | 232 | 95 | 7 | 6 | 231 | 4 | 197 | 7.25e-41 | 139 |
MS.gene85573.t1 | AT2G33310 | 44.828 | 174 | 72 | 6 | 76 | 230 | 68 | 236 | 4.82e-39 | 135 |
MS.gene85573.t1 | AT2G33310 | 44.828 | 174 | 72 | 6 | 76 | 230 | 68 | 236 | 4.82e-39 | 135 |
MS.gene85573.t1 | AT2G33310 | 44.767 | 172 | 71 | 6 | 78 | 230 | 71 | 237 | 6.69e-38 | 132 |
MS.gene85573.t1 | AT1G52830 | 38.813 | 219 | 96 | 6 | 6 | 224 | 4 | 184 | 8.81e-38 | 130 |
MS.gene85573.t1 | AT4G28640 | 48.408 | 157 | 65 | 5 | 83 | 225 | 88 | 242 | 1.68e-35 | 126 |
MS.gene85573.t1 | AT1G04550 | 41.477 | 176 | 76 | 3 | 76 | 231 | 62 | 230 | 2.35e-35 | 126 |
MS.gene85573.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 2.87e-35 | 126 |
MS.gene85573.t1 | AT3G16500 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 4.74e-34 | 123 |
MS.gene85573.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 5.20e-34 | 124 |
MS.gene85573.t1 | AT3G16500 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 7.28e-34 | 122 |
MS.gene85573.t1 | AT5G25890 | 39.157 | 166 | 77 | 3 | 62 | 227 | 29 | 170 | 2.66e-30 | 111 |
MS.gene85573.t1 | AT1G04100 | 40.719 | 167 | 70 | 4 | 85 | 224 | 95 | 259 | 7.52e-30 | 112 |
MS.gene85573.t1 | AT1G51950 | 40.625 | 160 | 74 | 4 | 80 | 220 | 93 | 250 | 2.22e-28 | 108 |
MS.gene85573.t1 | AT3G17600 | 32.877 | 146 | 68 | 4 | 75 | 217 | 36 | 154 | 2.19e-21 | 87.4 |
MS.gene85573.t1 | AT2G46990 | 39.623 | 106 | 51 | 2 | 114 | 219 | 80 | 172 | 7.85e-19 | 81.3 |
MS.gene85573.t1 | AT3G62100 | 38.889 | 108 | 53 | 2 | 110 | 217 | 74 | 168 | 1.62e-18 | 80.1 |
MS.gene85573.t1 | AT2G46990 | 40.659 | 91 | 41 | 2 | 114 | 204 | 80 | 157 | 3.91e-14 | 68.2 |
MS.gene85573.t1 | AT4G32280 | 23.944 | 213 | 105 | 6 | 50 | 232 | 64 | 249 | 1.04e-13 | 68.9 |
MS.gene85573.t1 | AT1G80390 | 34.000 | 150 | 61 | 3 | 9 | 158 | 15 | 126 | 1.57e-13 | 65.9 |
MS.gene85573.t1 | AT3G62100 | 37.895 | 95 | 46 | 2 | 110 | 204 | 74 | 155 | 2.06e-13 | 66.2 |
MS.gene85573.t1 | AT4G32280 | 29.204 | 113 | 56 | 2 | 120 | 232 | 119 | 207 | 1.46e-12 | 65.1 |
Find 78 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGAAGGAGCTGAACATTT+TGG | 0.275554 | 1.3:+54726917 | None:intergenic |
GGTGGTGGTGGCGGCGGCGG+TGG | 0.280712 | 1.3:-54728035 | MS.gene85573:CDS |
ATATATATTATAGGTAACTA+TGG | 0.289007 | 1.3:-54726497 | MS.gene85573:intron |
CTTCTCATTCAGATCTTCCT+TGG | 0.341646 | 1.3:+54727929 | None:intergenic |
GGTGGTGGCGGCGGCGGTGG+AGG | 0.343665 | 1.3:-54728032 | MS.gene85573:CDS |
TACTTAGCTGGTGGCTTAGC+AGG | 0.347183 | 1.3:+54727873 | None:intergenic |
GGTGGCGGCGGCGGTGGAGG+TGG | 0.350359 | 1.3:-54728029 | MS.gene85573:CDS |
TTGCATTTCTCCATTGCTCT+TGG | 0.358710 | 1.3:+54725490 | None:intergenic |
GACAAAGCTCAGTCTCCTTC+AGG | 0.370771 | 1.3:+54728069 | None:intergenic |
ATGAAAGGATCAGAAGCTAT+TGG | 0.371063 | 1.3:-54726135 | MS.gene85573:CDS |
CCTGGTGGTGGTGGCGGCGG+CGG | 0.379613 | 1.3:-54728038 | MS.gene85573:CDS |
GGCATCAGATAAATCTTTGT+AGG | 0.380510 | 1.3:+54726944 | None:intergenic |
GTGGCTTAGCAGGGTCCTTA+AGG | 0.389548 | 1.3:+54727883 | None:intergenic |
TACTGCTGCTGCATTTGTTA+AGG | 0.392669 | 1.3:-54727021 | MS.gene85573:CDS |
CATGAATGAGAGCAAGTTGA+TGG | 0.395903 | 1.3:-54726453 | MS.gene85573:CDS |
CTGCCTGGTGGTGGTGGCGG+CGG | 0.419116 | 1.3:-54728041 | MS.gene85573:CDS |
TGAAAGGATCAGAAGCTATT+GGG | 0.427068 | 1.3:-54726134 | MS.gene85573:CDS |
ATTGGGAAAACTTACTTAGC+TGG | 0.432635 | 1.3:+54727861 | None:intergenic |
TCATGAAGTCTATCATTCCT+TGG | 0.436607 | 1.3:+54726471 | None:intergenic |
GAGCTTTGTCTTGGTCTGCC+TGG | 0.443783 | 1.3:-54728056 | MS.gene85573:CDS |
TTTGTTAAGGTTTCCATGGA+TGG | 0.449811 | 1.3:-54727008 | MS.gene85573:CDS |
AAGGAGACTGAGCTTTGTCT+TGG | 0.456647 | 1.3:-54728065 | MS.gene85573:CDS |
GGATCAGAAGCTATTGGGCT+TGG | 0.459856 | 1.3:-54726129 | MS.gene85573:intron |
CTTGGTCTGCCTGGTGGTGG+TGG | 0.460328 | 1.3:-54728047 | MS.gene85573:CDS |
CATGAAGTCTATCATTCCTT+GGG | 0.461454 | 1.3:+54726472 | None:intergenic |
TATTTCAGGGCTCAAGTAGT+TGG | 0.461914 | 1.3:-54727131 | MS.gene85573:intron |
TGTCTTGGTCTGCCTGGTGG+TGG | 0.462328 | 1.3:-54728050 | MS.gene85573:CDS |
TATATATTATAGGTAACTAT+GGG | 0.462994 | 1.3:-54726496 | MS.gene85573:intron |
AAAGGAGAAGACCCTCCTTA+AGG | 0.463373 | 1.3:-54727898 | MS.gene85573:CDS |
GTCGCCATCCTTATCTTCAT+AGG | 0.465608 | 1.3:+54726400 | None:intergenic |
GAAGAACATGATGGCACAAA+AGG | 0.465863 | 1.3:-54727084 | MS.gene85573:CDS |
CCTCTCTTCGCAGAAGCCCT+TGG | 0.474958 | 1.3:+54727990 | None:intergenic |
GCTTAGCAGGGTCCTTAAGG+AGG | 0.489152 | 1.3:+54727886 | None:intergenic |
GGCCACCAGTGAGGTCATAC+AGG | 0.498221 | 1.3:-54727106 | MS.gene85573:CDS |
GGTCTGCCTGGTGGTGGTGG+CGG | 0.503771 | 1.3:-54728044 | MS.gene85573:CDS |
CCATCCTTATCTTCATAGGT+TGG | 0.508321 | 1.3:+54726404 | None:intergenic |
CGGTGGAGGTGGTTCTGAGG+TGG | 0.509616 | 1.3:-54728018 | MS.gene85573:CDS |
GAATGAGAAGAGTGCTTCAA+AGG | 0.512968 | 1.3:-54727916 | MS.gene85573:CDS |
TGCATTTGTTAAGGTTTCCA+TGG | 0.525650 | 1.3:-54727012 | MS.gene85573:CDS |
CCGCCGCCGCCACCACCACC+AGG | 0.530029 | 1.3:+54728038 | None:intergenic |
TGTGCCAACCTATGAAGATA+AGG | 0.537235 | 1.3:-54726408 | MS.gene85573:CDS |
TCAGGGCTCAAGTAGTTGGT+TGG | 0.538535 | 1.3:-54727127 | MS.gene85573:intron |
ACTTAGCTGGTGGCTTAGCA+GGG | 0.540758 | 1.3:+54727874 | None:intergenic |
TTCTTCCTGTATGACCTCAC+TGG | 0.545123 | 1.3:+54727101 | None:intergenic |
AAGGTAAGGTGCTCCATCCA+TGG | 0.548189 | 1.3:+54726995 | None:intergenic |
AAGTCAACCTTACGAAGGTA+AGG | 0.557851 | 1.3:+54726981 | None:intergenic |
TGCTCGTGGGAGATGTCCCA+TGG | 0.560169 | 1.3:-54726373 | MS.gene85573:CDS |
GTTCTGAGGTGGAAACTCCA+AGG | 0.563503 | 1.3:-54728007 | MS.gene85573:CDS |
TGGAGCACCTTACCTTCGTA+AGG | 0.564503 | 1.3:-54726988 | MS.gene85573:CDS |
CCAAGGGCTTCTGCGAAGAG+AGG | 0.567370 | 1.3:-54727990 | MS.gene85573:CDS |
CATTTCAGCACCAAGAGCAA+TGG | 0.570918 | 1.3:-54725500 | MS.gene85573:intron |
ATGTTCAGCTCCTTCACCAC+TGG | 0.578252 | 1.3:-54726912 | MS.gene85573:intron |
TAATTAATTACCAGTGGTGA+AGG | 0.579528 | 1.3:+54726902 | None:intergenic |
AATATGGCCACTATGGGGCA+TGG | 0.587296 | 1.3:-54728098 | MS.gene85573:CDS |
CTTAGCAGGGTCCTTAAGGA+GGG | 0.587502 | 1.3:+54727887 | None:intergenic |
GTTCAATCCATGCCCCATAG+TGG | 0.588585 | 1.3:+54728091 | None:intergenic |
AAGCGTCTGCGCATAATGAA+AGG | 0.596352 | 1.3:-54726150 | MS.gene85573:CDS |
GGATGGCGACTGGATGCTCG+TGG | 0.596688 | 1.3:-54726387 | MS.gene85573:CDS |
ATGAAGATAAGGATGGCGAC+TGG | 0.598557 | 1.3:-54726397 | MS.gene85573:CDS |
GCTATAGGAACTTACTCCCA+TGG | 0.598945 | 1.3:+54726356 | None:intergenic |
TTCTGAGGTGGAAACTCCAA+GGG | 0.603496 | 1.3:-54728006 | MS.gene85573:CDS |
GGGAAAACTTACTTAGCTGG+TGG | 0.604797 | 1.3:+54727864 | None:intergenic |
CGGCGGTGGAGGTGGTTCTG+AGG | 0.606000 | 1.3:-54728021 | MS.gene85573:CDS |
TTCCTGTATGACCTCACTGG+TGG | 0.606534 | 1.3:+54727104 | None:intergenic |
ATAGGTAACTATGGGGCCCA+AGG | 0.608548 | 1.3:-54726488 | MS.gene85573:intron |
GAAGCTTAATCTTCAAACCA+AGG | 0.609730 | 1.3:-54727946 | MS.gene85573:CDS |
CTTTGTCTTGGTCTGCCTGG+TGG | 0.610253 | 1.3:-54728053 | MS.gene85573:CDS |
CTATAGGAACTTACTCCCAT+GGG | 0.622755 | 1.3:+54726357 | None:intergenic |
GGGGCATGGATTGAACCTGA+AGG | 0.627746 | 1.3:-54728084 | MS.gene85573:CDS |
CCAACCTATGAAGATAAGGA+TGG | 0.646142 | 1.3:-54726404 | MS.gene85573:CDS |
GCTCGTGGGAGATGTCCCAT+GGG | 0.650152 | 1.3:-54726372 | MS.gene85573:CDS |
GTCATACAGGAAGAACATGA+TGG | 0.666998 | 1.3:-54727093 | MS.gene85573:CDS |
GATGGCGACTGGATGCTCGT+GGG | 0.667120 | 1.3:-54726386 | MS.gene85573:CDS |
AAAAGAATATGGCCACTATG+GGG | 0.689548 | 1.3:-54728103 | None:intergenic |
TAGTTGGTTGGCCACCAGTG+AGG | 0.691007 | 1.3:-54727115 | MS.gene85573:CDS |
ACAAAAGGTTAACAATACTG+AGG | 0.707970 | 1.3:-54727069 | MS.gene85573:CDS |
TTGTCAAGTCAACCTTACGA+AGG | 0.716471 | 1.3:+54726976 | None:intergenic |
ATATATTATAGGTAACTATG+GGG | 0.717921 | 1.3:-54726495 | MS.gene85573:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTAATTTATATATATTAT+AGG | - | chr1.3:54727066-54727085 | MS.gene85573:CDS | 0.0% |
!! | TTATTATTAATATTATTATA+AGG | - | chr1.3:54726923-54726942 | MS.gene85573:CDS | 0.0% |
!! | AAATAATATTTACATTATGT+TGG | + | chr1.3:54727874-54727893 | None:intergenic | 10.0% |
!! | ATGATAATTTAAATATTTGA+AGG | + | chr1.3:54727824-54727843 | None:intergenic | 10.0% |
!! | TGTAAATATTATTTAATAGT+TGG | - | chr1.3:54727880-54727899 | MS.gene85573:CDS | 10.0% |
!! | TTAAAAAATTGCATAAAATT+TGG | + | chr1.3:54726359-54726378 | None:intergenic | 10.0% |
!!! | ATTATTAATTTGAAGAAAAA+TGG | + | chr1.3:54726281-54726300 | None:intergenic | 10.0% |
!! | AAAGAATAATTGAGATTTAT+AGG | - | chr1.3:54726391-54726410 | MS.gene85573:CDS | 15.0% |
!! | AAGAATAATTGAGATTTATA+GGG | - | chr1.3:54726392-54726411 | MS.gene85573:CDS | 15.0% |
!! | AATATGAAAAAACGATATAA+GGG | + | chr1.3:54726060-54726079 | None:intergenic | 15.0% |
!! | AGATTAATTATTATCATCTT+GGG | - | chr1.3:54726997-54727016 | MS.gene85573:CDS | 15.0% |
!! | ATATATATTATAGGTAACTA+TGG | - | chr1.3:54727075-54727094 | MS.gene85573:CDS | 15.0% |
!! | TAGATTAATTATTATCATCT+TGG | - | chr1.3:54726996-54727015 | MS.gene85573:CDS | 15.0% |
!! | TATATATTATAGGTAACTAT+GGG | - | chr1.3:54727076-54727095 | MS.gene85573:CDS | 15.0% |
!!! | GTTTTTTTTTATAACTTTCT+TGG | - | chr1.3:54725761-54725780 | MS.gene85573:intron | 15.0% |
!!! | TGGTTATTTAAATTTTTTGA+AGG | - | chr1.3:54727381-54727400 | MS.gene85573:intron | 15.0% |
!!! | TTCAATGATTTATTTTTTGT+TGG | + | chr1.3:54727682-54727701 | None:intergenic | 15.0% |
!! | AACAAACATATATATGTACT+TGG | - | chr1.3:54727314-54727333 | MS.gene85573:intron | 20.0% |
!! | AAGTACATATATATGTTTGT+TGG | + | chr1.3:54727315-54727334 | None:intergenic | 20.0% |
!! | AATAACCAATGTTAATTTCA+TGG | + | chr1.3:54727369-54727388 | None:intergenic | 20.0% |
!! | AATAAGAAGATAGAAAAGAA+AGG | - | chr1.3:54725965-54725984 | MS.gene85573:intron | 20.0% |
!! | AATATTACAAATACAAGCAT+AGG | + | chr1.3:54726714-54726733 | None:intergenic | 20.0% |
!! | AATTTACTAAACAAGCATTA+TGG | - | chr1.3:54726102-54726121 | MS.gene85573:intron | 20.0% |
!! | AGTACATATATATGTTTGTT+GGG | + | chr1.3:54727314-54727333 | None:intergenic | 20.0% |
!! | ATAAACTATATCAAATAGCT+AGG | + | chr1.3:54726850-54726869 | None:intergenic | 20.0% |
!! | ATATATTATAGGTAACTATG+GGG | - | chr1.3:54727077-54727096 | MS.gene85573:CDS | 20.0% |
!! | ATATGAAAAAACGATATAAG+GGG | + | chr1.3:54726059-54726078 | None:intergenic | 20.0% |
!! | ATTGAATTGAAAATCTTAGA+CGG | - | chr1.3:54727696-54727715 | MS.gene85573:intron | 20.0% |
!! | CAATATGAAAAAACGATATA+AGG | + | chr1.3:54726061-54726080 | None:intergenic | 20.0% |
!! | TATACTATTTGTATATGAGT+TGG | - | chr1.3:54726029-54726048 | MS.gene85573:intron | 20.0% |
!!! | AATATTTTGTACTTAACTCA+TGG | - | chr1.3:54727497-54727516 | MS.gene85573:intron | 20.0% |
!!! | TTGTTTAGTAAATGTTGTTT+TGG | + | chr1.3:54725818-54725837 | None:intergenic | 20.0% |
!!! | TTTATTTTTTGTTGGTCTTA+AGG | + | chr1.3:54727674-54727693 | None:intergenic | 20.0% |
!!! | TTTCTTTTCTATCTTCTTAT+TGG | + | chr1.3:54725966-54725985 | None:intergenic | 20.0% |
!!! | TTTTTTTCTATCTTCCATTT+GGG | + | chr1.3:54726137-54726156 | None:intergenic | 20.0% |
!!! | TTTTTTTTCTATCTTCCATT+TGG | + | chr1.3:54726138-54726157 | None:intergenic | 20.0% |
! | ATCAAAATTACAAGCATTTG+TGG | + | chr1.3:54726235-54726254 | None:intergenic | 25.0% |
! | TAGTACTAATTAATTACCAG+TGG | + | chr1.3:54726679-54726698 | None:intergenic | 25.0% |
! | TCAAAATTACAAGCATTTGT+GGG | + | chr1.3:54726234-54726253 | None:intergenic | 25.0% |
! | TTCATGGATGTGTAAATATA+TGG | + | chr1.3:54727353-54727372 | None:intergenic | 25.0% |
!! | GTACATATATATGTTTGTTG+GGG | + | chr1.3:54727313-54727332 | None:intergenic | 25.0% |
!!! | ACTTTTTTTTGTTGTGATGA+TGG | + | chr1.3:54726902-54726921 | None:intergenic | 25.0% |
!!! | ATTTTTTGAAGGATGTTTGT+TGG | - | chr1.3:54727392-54727411 | MS.gene85573:intron | 25.0% |
!!! | TATAAGGTTTTAGATCTTGA+AGG | - | chr1.3:54726939-54726958 | MS.gene85573:CDS | 25.0% |
!!! | TTATGCAATTTTTTAAGCCT+TGG | - | chr1.3:54726363-54726382 | MS.gene85573:intron | 25.0% |
AAGCATGCAAGTACTTTAAT+TGG | + | chr1.3:54725732-54725751 | None:intergenic | 30.0% | |
ACAAAAGGTTAACAATACTG+AGG | - | chr1.3:54726503-54726522 | MS.gene85573:intron | 30.0% | |
AGCATGCAAGTACTTTAATT+GGG | + | chr1.3:54725731-54725750 | None:intergenic | 30.0% | |
ATATTTGTACAACTGTTCTG+TGG | - | chr1.3:54725862-54725881 | MS.gene85573:intron | 30.0% | |
CACATCCATGAAATTAACAT+TGG | - | chr1.3:54727361-54727380 | MS.gene85573:intron | 30.0% | |
CTATATCAAATAGCTAGGTA+TGG | + | chr1.3:54726845-54726864 | None:intergenic | 30.0% | |
GGCTACTTATTCTAACTTAT+TGG | - | chr1.3:54728034-54728053 | MS.gene85573:CDS | 30.0% | |
TAATTAATTACCAGTGGTGA+AGG | + | chr1.3:54726673-54726692 | None:intergenic | 30.0% | |
TGATTGTAGTATATAGTAGC+TGG | + | chr1.3:54727259-54727278 | None:intergenic | 30.0% | |
TGGATGTGTAAATATATGGT+TGG | + | chr1.3:54727349-54727368 | None:intergenic | 30.0% | |
! | CAATTATTCTTTTCTCTCCA+AGG | + | chr1.3:54726383-54726402 | None:intergenic | 30.0% |
! | TGGTCTTAAGGATTAAGTTT+AGG | + | chr1.3:54727662-54727681 | None:intergenic | 30.0% |
AATAGCTAGGTATGGACTTT+AGG | + | chr1.3:54726837-54726856 | None:intergenic | 35.0% | |
AGAGAGAGAAAAAAGAAGAG+AGG | + | chr1.3:54725932-54725951 | None:intergenic | 35.0% | |
ATGAAAGGATCAGAAGCTAT+TGG | - | chr1.3:54727437-54727456 | MS.gene85573:intron | 35.0% | |
ATTGGGAAAACTTACTTAGC+TGG | + | chr1.3:54725714-54725733 | None:intergenic | 35.0% | |
CATGAAGTCTATCATTCCTT+GGG | + | chr1.3:54727103-54727122 | None:intergenic | 35.0% | |
GAAGCTTAATCTTCAAACCA+AGG | - | chr1.3:54725626-54725645 | MS.gene85573:intron | 35.0% | |
GGCATCAGATAAATCTTTGT+AGG | + | chr1.3:54726631-54726650 | None:intergenic | 35.0% | |
TAATCTTTCAGCATTCTCTC+TGG | + | chr1.3:54726769-54726788 | None:intergenic | 35.0% | |
TAGTATATAGTAGCTGGAGA+TGG | + | chr1.3:54727253-54727272 | None:intergenic | 35.0% | |
TATGGATTCTCAAACCCAAA+TGG | - | chr1.3:54726120-54726139 | MS.gene85573:intron | 35.0% | |
TCATGAAGTCTATCATTCCT+TGG | + | chr1.3:54727104-54727123 | None:intergenic | 35.0% | |
TGAAAGGATCAGAAGCTATT+GGG | - | chr1.3:54727438-54727457 | MS.gene85573:intron | 35.0% | |
TGCATCAAGTATAATGCAAG+TGG | + | chr1.3:54727610-54727629 | None:intergenic | 35.0% | |
TTTAGATCTTGAAGGATGCA+TGG | - | chr1.3:54726947-54726966 | MS.gene85573:CDS | 35.0% | |
TTTGTTAAGGTTTCCATGGA+TGG | - | chr1.3:54726564-54726583 | MS.gene85573:intron | 35.0% | |
! | TAACTCATGGAAGTATGCTT+TGG | - | chr1.3:54727510-54727529 | MS.gene85573:intron | 35.0% |
! | TGCATTTGTTAAGGTTTCCA+TGG | - | chr1.3:54726560-54726579 | MS.gene85573:intron | 35.0% |
AAGTCAACCTTACGAAGGTA+AGG | + | chr1.3:54726594-54726613 | None:intergenic | 40.0% | |
ACAAAATGACACGCACACAA+GGG | + | chr1.3:54728014-54728033 | None:intergenic | 40.0% | |
CCAACCTATGAAGATAAGGA+TGG | - | chr1.3:54727168-54727187 | MS.gene85573:intron | 40.0% | |
CCATCCTTATCTTCATAGGT+TGG | + | chr1.3:54727171-54727190 | None:intergenic | 40.0% | |
CTATAGGAACTTACTCCCAT+GGG | + | chr1.3:54727218-54727237 | None:intergenic | 40.0% | |
CTTCTCATTCAGATCTTCCT+TGG | + | chr1.3:54725646-54725665 | None:intergenic | 40.0% | |
GAAGAACATGATGGCACAAA+AGG | - | chr1.3:54726488-54726507 | MS.gene85573:intron | 40.0% | |
GTCATACAGGAAGAACATGA+TGG | - | chr1.3:54726479-54726498 | MS.gene85573:CDS | 40.0% | |
TATATAGTAGCTGGAGATGG+AGG | + | chr1.3:54727250-54727269 | None:intergenic | 40.0% | |
TATTTCAGGGCTCAAGTAGT+TGG | - | chr1.3:54726441-54726460 | MS.gene85573:CDS | 40.0% | |
TGTGCCAACCTATGAAGATA+AGG | - | chr1.3:54727164-54727183 | MS.gene85573:intron | 40.0% | |
TTGCATTTCTCCATTGCTCT+TGG | + | chr1.3:54728085-54728104 | None:intergenic | 40.0% | |
TTGTCAAGTCAACCTTACGA+AGG | + | chr1.3:54726599-54726618 | None:intergenic | 40.0% | |
! | AGCATTCTCTCTGGTTTAGA+TGG | + | chr1.3:54726760-54726779 | None:intergenic | 40.0% |
! | CATGAATGAGAGCAAGTTGA+TGG | - | chr1.3:54727119-54727138 | MS.gene85573:CDS | 40.0% |
! | CATTCTCTCTGGTTTAGATG+GGG | + | chr1.3:54726758-54726777 | None:intergenic | 40.0% |
! | GCATTCTCTCTGGTTTAGAT+GGG | + | chr1.3:54726759-54726778 | None:intergenic | 40.0% |
! | TACTGCTGCTGCATTTGTTA+AGG | - | chr1.3:54726551-54726570 | MS.gene85573:intron | 40.0% |
!! | GAATGAGAAGAGTGCTTCAA+AGG | - | chr1.3:54725656-54725675 | MS.gene85573:intron | 40.0% |
AAAATGACACGCACACAAGG+GGG | + | chr1.3:54728012-54728031 | None:intergenic | 45.0% | |
AAAGGAGAAGACCCTCCTTA+AGG | - | chr1.3:54725674-54725693 | MS.gene85573:intron | 45.0% | |
AAGCGTCTGCGCATAATGAA+AGG | - | chr1.3:54727422-54727441 | MS.gene85573:intron | 45.0% | |
ATGAAGATAAGGATGGCGAC+TGG | - | chr1.3:54727175-54727194 | MS.gene85573:intron | 45.0% | |
ATGGAGGTTGGATGAGCTAT+AGG | + | chr1.3:54727234-54727253 | None:intergenic | 45.0% | |
CAAAATGACACGCACACAAG+GGG | + | chr1.3:54728013-54728032 | None:intergenic | 45.0% | |
CACAAAATGACACGCACACA+AGG | + | chr1.3:54728015-54728034 | None:intergenic | 45.0% | |
CATTTCAGCACCAAGAGCAA+TGG | - | chr1.3:54728072-54728091 | MS.gene85573:CDS | 45.0% | |
GCTATAGGAACTTACTCCCA+TGG | + | chr1.3:54727219-54727238 | None:intergenic | 45.0% | |
GGGAAAACTTACTTAGCTGG+TGG | + | chr1.3:54725711-54725730 | None:intergenic | 45.0% | |
GTCGCCATCCTTATCTTCAT+AGG | + | chr1.3:54727175-54727194 | None:intergenic | 45.0% | |
TTCTTCCTGTATGACCTCAC+TGG | + | chr1.3:54726474-54726493 | None:intergenic | 45.0% | |
! | AAGGAGACTGAGCTTTGTCT+TGG | - | chr1.3:54725507-54725526 | MS.gene85573:intron | 45.0% |
! | GGTGAAGGAGCTGAACATTT+TGG | + | chr1.3:54726658-54726677 | None:intergenic | 45.0% |
!! | TTCTGAGGTGGAAACTCCAA+GGG | - | chr1.3:54725566-54725585 | MS.gene85573:intron | 45.0% |
!!! | CTTGTGTGCGTGTCATTTTG+TGG | - | chr1.3:54728013-54728032 | MS.gene85573:CDS | 45.0% |
!!! | GGAGCTGAACATTTTGGCTA+AGG | + | chr1.3:54726652-54726671 | None:intergenic | 45.0% |
!! | ATTATATTAATAATATTTCA+GGG | - | chr1.3:54726428-54726447 | MS.gene85573:CDS | 5.0% |
!! | ATTTGTAATATTTATATATA+TGG | - | chr1.3:54726722-54726741 | MS.gene85573:intron | 5.0% |
!! | TATTATATTAATAATATTTC+AGG | - | chr1.3:54726427-54726446 | MS.gene85573:CDS | 5.0% |
AAATGACACGCACACAAGGG+GGG | + | chr1.3:54728011-54728030 | None:intergenic | 50.0% | |
ACTTAGCTGGTGGCTTAGCA+GGG | + | chr1.3:54725701-54725720 | None:intergenic | 50.0% | |
AGGATGCATGGCGATTGTTG+AGG | - | chr1.3:54726959-54726978 | MS.gene85573:CDS | 50.0% | |
ATAGGTAACTATGGGGCCCA+AGG | - | chr1.3:54727084-54727103 | MS.gene85573:CDS | 50.0% | |
ATGTTCAGCTCCTTCACCAC+TGG | - | chr1.3:54726660-54726679 | MS.gene85573:intron | 50.0% | |
CTTAGCAGGGTCCTTAAGGA+GGG | + | chr1.3:54725688-54725707 | None:intergenic | 50.0% | |
GACAAAGCTCAGTCTCCTTC+AGG | + | chr1.3:54725506-54725525 | None:intergenic | 50.0% | |
GGATCAGAAGCTATTGGGCT+TGG | - | chr1.3:54727443-54727462 | MS.gene85573:intron | 50.0% | |
GTTCAATCCATGCCCCATAG+TGG | + | chr1.3:54725484-54725503 | None:intergenic | 50.0% | |
TACTTAGCTGGTGGCTTAGC+AGG | + | chr1.3:54725702-54725721 | None:intergenic | 50.0% | |
TAGTAGCTGGAGATGGAGGT+TGG | + | chr1.3:54727246-54727265 | None:intergenic | 50.0% | |
TCAGGGCTCAAGTAGTTGGT+TGG | - | chr1.3:54726445-54726464 | MS.gene85573:CDS | 50.0% | |
TTCCTGTATGACCTCACTGG+TGG | + | chr1.3:54726471-54726490 | None:intergenic | 50.0% | |
! | AAGGTAAGGTGCTCCATCCA+TGG | + | chr1.3:54726580-54726599 | None:intergenic | 50.0% |
! | TGGAGCACCTTACCTTCGTA+AGG | - | chr1.3:54726584-54726603 | MS.gene85573:intron | 50.0% |
!! | GTTCTGAGGTGGAAACTCCA+AGG | - | chr1.3:54725565-54725584 | MS.gene85573:intron | 50.0% |
CTTTGTCTTGGTCTGCCTGG+TGG | - | chr1.3:54725519-54725538 | MS.gene85573:intron | 55.0% | |
GCTTAGCAGGGTCCTTAAGG+AGG | + | chr1.3:54725689-54725708 | None:intergenic | 55.0% | |
GTGGCTTAGCAGGGTCCTTA+AGG | + | chr1.3:54725692-54725711 | None:intergenic | 55.0% | |
! | GAGCTTTGTCTTGGTCTGCC+TGG | - | chr1.3:54725516-54725535 | MS.gene85573:intron | 55.0% |
! | GGGGCATGGATTGAACCTGA+AGG | - | chr1.3:54725488-54725507 | MS.gene85573:CDS | 55.0% |
! | TAGTTGGTTGGCCACCAGTG+AGG | - | chr1.3:54726457-54726476 | MS.gene85573:CDS | 55.0% |
CCAAGGGCTTCTGCGAAGAG+AGG | - | chr1.3:54725582-54725601 | MS.gene85573:intron | 60.0% | |
CCTCTCTTCGCAGAAGCCCT+TGG | + | chr1.3:54725585-54725604 | None:intergenic | 60.0% | |
GATGGCGACTGGATGCTCGT+GGG | - | chr1.3:54727186-54727205 | MS.gene85573:intron | 60.0% | |
GCACACAAGGGGGGACTCAA+GGG | + | chr1.3:54728002-54728021 | None:intergenic | 60.0% | |
GCTCGTGGGAGATGTCCCAT+GGG | - | chr1.3:54727200-54727219 | MS.gene85573:intron | 60.0% | |
GGCCACCAGTGAGGTCATAC+AGG | - | chr1.3:54726466-54726485 | MS.gene85573:CDS | 60.0% | |
TGCTCGTGGGAGATGTCCCA+TGG | - | chr1.3:54727199-54727218 | MS.gene85573:intron | 60.0% | |
TGTCTTGGTCTGCCTGGTGG+TGG | - | chr1.3:54725522-54725541 | MS.gene85573:intron | 60.0% | |
CGCACACAAGGGGGGACTCA+AGG | + | chr1.3:54728003-54728022 | None:intergenic | 65.0% | |
GGATGGCGACTGGATGCTCG+TGG | - | chr1.3:54727185-54727204 | MS.gene85573:intron | 65.0% | |
!! | CGGTGGAGGTGGTTCTGAGG+TGG | - | chr1.3:54725554-54725573 | MS.gene85573:intron | 65.0% |
!! | CTTGGTCTGCCTGGTGGTGG+TGG | - | chr1.3:54725525-54725544 | MS.gene85573:intron | 65.0% |
! | CGGCGGTGGAGGTGGTTCTG+AGG | - | chr1.3:54725551-54725570 | MS.gene85573:intron | 70.0% |
!! | GGTCTGCCTGGTGGTGGTGG+CGG | - | chr1.3:54725528-54725547 | MS.gene85573:intron | 70.0% |
!! | CTGCCTGGTGGTGGTGGCGG+CGG | - | chr1.3:54725531-54725550 | MS.gene85573:intron | 75.0% |
!!! | CCTGGTGGTGGTGGCGGCGG+CGG | - | chr1.3:54725534-54725553 | MS.gene85573:intron | 80.0% |
! | CCGCCGCCGCCACCACCACC+AGG | + | chr1.3:54725537-54725556 | None:intergenic | 85.0% |
!! | GGTGGCGGCGGCGGTGGAGG+TGG | - | chr1.3:54725543-54725562 | MS.gene85573:intron | 85.0% |
!!! | GGTGGTGGCGGCGGCGGTGG+AGG | - | chr1.3:54725540-54725559 | MS.gene85573:intron | 85.0% |
!!! | GGTGGTGGTGGCGGCGGCGG+TGG | - | chr1.3:54725537-54725556 | MS.gene85573:intron | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 54725477 | 54728117 | 54725477 | ID=MS.gene85573 |
chr1.3 | mRNA | 54725477 | 54728117 | 54725477 | ID=MS.gene85573.t1;Parent=MS.gene85573 |
chr1.3 | exon | 54727876 | 54728117 | 54727876 | ID=MS.gene85573.t1.exon1;Parent=MS.gene85573.t1 |
chr1.3 | CDS | 54727876 | 54728117 | 54727876 | ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1 |
chr1.3 | exon | 54726913 | 54727145 | 54726913 | ID=MS.gene85573.t1.exon2;Parent=MS.gene85573.t1 |
chr1.3 | CDS | 54726913 | 54727145 | 54726913 | ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1 |
chr1.3 | exon | 54726371 | 54726506 | 54726371 | ID=MS.gene85573.t1.exon3;Parent=MS.gene85573.t1 |
chr1.3 | CDS | 54726371 | 54726506 | 54726371 | ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1 |
chr1.3 | exon | 54726130 | 54726191 | 54726130 | ID=MS.gene85573.t1.exon4;Parent=MS.gene85573.t1 |
chr1.3 | CDS | 54726130 | 54726191 | 54726130 | ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1 |
chr1.3 | exon | 54725477 | 54725514 | 54725477 | ID=MS.gene85573.t1.exon5;Parent=MS.gene85573.t1 |
chr1.3 | CDS | 54725477 | 54725514 | 54725477 | ID=cds.MS.gene85573.t1;Parent=MS.gene85573.t1 |
Gene Sequence |
Protein sequence |