AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07402

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07402.t1 MTR_1g093240 99.153 236 2 0 1 236 1 236 1.75e-175 481
MS.gene07402.t1 MTR_1g093240 99.107 224 2 0 1 224 1 224 2.80e-165 456
MS.gene07402.t1 MTR_1g093240 99.020 204 2 0 1 204 1 204 1.55e-149 415
MS.gene07402.t1 MTR_1g070520 69.038 239 50 7 12 236 17 245 6.15e-103 298
MS.gene07402.t1 MTR_7g096090 64.113 248 66 5 6 236 9 250 6.19e-98 286
MS.gene07402.t1 MTR_1g080860 62.705 244 71 6 8 236 15 253 1.31e-95 280
MS.gene07402.t1 MTR_1g080860 61.207 232 70 6 8 224 15 241 3.24e-86 256
MS.gene07402.t1 MTR_6g488150 51.562 256 85 6 6 236 13 254 2.42e-78 236
MS.gene07402.t1 MTR_8g103030 48.364 275 93 8 7 236 23 293 6.65e-71 219
MS.gene07402.t1 MTR_5g030710 48.252 286 90 7 8 236 51 335 1.54e-70 219
MS.gene07402.t1 MTR_8g067530 44.755 286 101 5 6 236 73 356 1.27e-67 212
MS.gene07402.t1 MTR_2g101500 43.894 303 95 8 8 236 25 326 1.72e-66 208
MS.gene07402.t1 MTR_5g067350 62.893 159 57 2 78 236 191 347 3.49e-66 208
MS.gene07402.t1 MTR_1g070830 46.429 224 79 6 8 224 12 201 8.44e-54 172
MS.gene07402.t1 MTR_1g076270 45.662 219 70 6 6 224 9 178 5.67e-52 166
MS.gene07402.t1 MTR_1g093350 45.662 219 70 6 6 224 9 178 5.67e-52 166
MS.gene07402.t1 MTR_1g040675 42.986 221 83 6 8 224 1 182 2.46e-49 160
MS.gene07402.t1 MTR_4g011880 41.304 230 75 7 1 228 1 172 1.76e-38 132
MS.gene07402.t1 MTR_1g069495 42.623 183 72 3 82 231 81 263 1.39e-37 132
MS.gene07402.t1 MTR_1g040675 39.303 201 79 6 8 204 1 162 5.75e-37 127
MS.gene07402.t1 MTR_2g102490 39.437 213 81 7 10 219 16 183 5.86e-37 129
MS.gene07402.t1 MTR_6g488150 41.111 180 69 5 5 161 12 177 8.01e-33 118
MS.gene07402.t1 MTR_8g014520 38.150 173 91 3 64 220 88 260 2.16e-29 111
MS.gene07402.t1 MTR_8g014520 38.150 173 91 3 64 220 88 260 2.20e-29 111
MS.gene07402.t1 MTR_2g100780 39.412 170 72 5 77 220 90 254 3.73e-28 108
MS.gene07402.t1 MTR_2g100780 39.412 170 72 5 77 220 90 254 5.57e-28 107
MS.gene07402.t1 MTR_5g067350 58.537 82 33 1 78 159 191 271 3.25e-25 100
MS.gene07402.t1 MTR_4g124300 32.867 143 67 4 81 221 69 184 2.93e-19 82.4
MS.gene07402.t1 MTR_3g106850 26.950 141 83 3 83 221 88 210 4.74e-17 77.4
MS.gene07402.t1 MTR_1g085750 41.509 106 48 3 113 217 78 170 5.40e-17 76.3
MS.gene07402.t1 MTR_4g115075 26.667 135 78 1 84 218 93 206 5.53e-15 71.6
MS.gene07402.t1 MTR_7g110790 39.604 101 47 4 118 217 68 155 2.48e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07402.t1 AT4G14550 75.424 236 43 4 8 236 1 228 4.04e-121 344
MS.gene07402.t1 AT3G23050 70.683 249 50 6 4 236 2 243 8.61e-118 336
MS.gene07402.t1 AT4G14550 74.554 224 42 4 8 224 1 216 7.30e-113 323
MS.gene07402.t1 AT1G04250 65.272 239 57 5 8 236 7 229 1.95e-103 299
MS.gene07402.t1 AT3G04730 64.050 242 67 4 8 236 2 236 6.72e-103 298
MS.gene07402.t1 AT4G14550 72.906 203 40 4 8 203 1 195 2.40e-98 285
MS.gene07402.t1 AT3G23050 68.056 216 47 5 4 204 2 210 5.24e-95 277
MS.gene07402.t1 AT4G29080 48.699 269 99 8 6 235 36 304 3.76e-71 220
MS.gene07402.t1 AT5G65670 44.964 278 102 6 8 236 61 336 1.52e-66 209
MS.gene07402.t1 AT5G65670 44.643 280 102 7 8 236 61 338 1.73e-64 204
MS.gene07402.t1 AT2G22670 53.271 214 79 5 41 235 107 318 1.24e-63 201
MS.gene07402.t1 AT2G22670 53.271 214 79 5 41 235 107 318 1.24e-63 201
MS.gene07402.t1 AT2G22670 53.271 214 79 5 41 235 124 335 1.79e-63 201
MS.gene07402.t1 AT4G14550 67.296 159 37 4 8 159 1 151 5.75e-63 195
MS.gene07402.t1 AT2G22670 52.336 214 79 6 41 235 107 316 2.24e-60 192
MS.gene07402.t1 AT2G22670 52.336 214 79 6 41 235 107 316 2.24e-60 192
MS.gene07402.t1 AT3G23050 60.694 173 46 5 4 161 2 167 1.21e-59 186
MS.gene07402.t1 AT1G04240 47.059 221 81 7 4 224 1 185 4.63e-54 172
MS.gene07402.t1 AT1G04240 46.429 224 84 7 1 224 98 285 2.53e-53 174
MS.gene07402.t1 AT5G43700 48.624 218 66 7 8 225 11 182 4.00e-53 170
MS.gene07402.t1 AT3G23030 44.240 217 66 5 8 224 9 170 4.75e-49 159
MS.gene07402.t1 AT3G23030 44.240 217 66 5 8 224 96 257 2.74e-48 160
MS.gene07402.t1 AT4G14560 43.056 216 67 5 6 221 5 164 5.93e-44 145
MS.gene07402.t1 AT1G15580 40.639 219 70 4 1 219 1 159 2.32e-43 144
MS.gene07402.t1 AT3G15540 40.517 232 94 7 6 231 4 197 2.58e-41 140
MS.gene07402.t1 AT2G33310 44.828 174 72 6 76 230 68 236 4.20e-39 135
MS.gene07402.t1 AT2G33310 44.828 174 72 6 76 230 68 236 4.20e-39 135
MS.gene07402.t1 AT2G33310 44.767 172 71 6 78 230 71 237 5.46e-38 133
MS.gene07402.t1 AT1G52830 38.356 219 97 6 6 224 4 184 2.11e-37 129
MS.gene07402.t1 AT4G28640 49.045 157 64 5 83 225 88 242 5.29e-36 127
MS.gene07402.t1 AT4G28640 49.032 155 63 5 83 223 88 240 8.95e-36 127
MS.gene07402.t1 AT1G04550 41.477 176 76 3 76 231 62 230 1.16e-35 127
MS.gene07402.t1 AT4G28640 49.032 155 63 5 83 223 88 240 1.77e-34 125
MS.gene07402.t1 AT3G16500 37.662 231 109 8 11 220 36 252 2.76e-33 121
MS.gene07402.t1 AT3G16500 37.662 231 109 8 11 220 36 252 3.90e-33 121
MS.gene07402.t1 AT5G25890 39.157 166 77 3 62 227 29 170 2.75e-30 111
MS.gene07402.t1 AT1G04100 42.515 167 67 4 85 224 95 259 6.98e-30 112
MS.gene07402.t1 AT1G51950 41.250 160 73 4 80 220 93 250 6.34e-29 110
MS.gene07402.t1 AT3G17600 32.877 146 68 4 75 217 36 154 2.85e-21 87.0
MS.gene07402.t1 AT2G46990 39.623 106 51 2 114 219 80 172 6.99e-19 81.3
MS.gene07402.t1 AT3G62100 38.889 108 53 2 110 217 74 168 1.59e-18 80.1
MS.gene07402.t1 AT2G46990 40.659 91 41 2 114 204 80 157 3.64e-14 68.2
MS.gene07402.t1 AT4G32280 24.413 213 104 6 50 232 64 249 1.40e-13 68.6
MS.gene07402.t1 AT1G80390 34.000 150 61 3 9 158 15 126 1.51e-13 65.9
MS.gene07402.t1 AT3G62100 37.895 95 46 2 110 204 74 155 1.96e-13 66.2
MS.gene07402.t1 AT4G32280 29.204 113 56 2 120 232 119 207 1.46e-12 65.1

Find 79 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAGGAGCTGAACATTT+TGG 0.275554 1.2:-64253371 None:intergenic
GGTGGTGGTGGCGGCGGCGG+TGG 0.280712 1.2:+64252242 MS.gene07402:CDS
ATATATATTATAGGTAACTA+TGG 0.289007 1.2:+64253791 MS.gene07402:intron
CTTCTCATTCAGATCTTCCT+TGG 0.341646 1.2:-64252348 None:intergenic
GGTGGTGGCGGCGGCGGTGG+AGG 0.343665 1.2:+64252245 MS.gene07402:CDS
TACTTAGCTGGTGGCTTAGC+AGG 0.347183 1.2:-64252404 None:intergenic
GGTGGCGGCGGCGGTGGAGG+TGG 0.350359 1.2:+64252248 MS.gene07402:CDS
TTGCATTTCTCCATTGCTCT+TGG 0.358710 1.2:-64254796 None:intergenic
GACAAAGCTCAGTCTCCTTC+AGG 0.370771 1.2:-64252208 None:intergenic
ATGAAAGGATCAGAAGCTAT+TGG 0.371063 1.2:+64254153 MS.gene07402:CDS
CCTGGTGGTGGTGGCGGCGG+CGG 0.379613 1.2:+64252239 MS.gene07402:CDS
GGCATCAGATAAATCTTTGT+AGG 0.380510 1.2:-64253344 None:intergenic
GTGGCTTAGCAGGGTCCTTA+AGG 0.389548 1.2:-64252394 None:intergenic
TACTGCTGCTGCATTTGTTA+AGG 0.392669 1.2:+64253267 MS.gene07402:CDS
CATGAATGAGAGCAAGTTGA+TGG 0.395903 1.2:+64253835 MS.gene07402:CDS
CTGCCTGGTGGTGGTGGCGG+CGG 0.419116 1.2:+64252236 MS.gene07402:CDS
TGAAAGGATCAGAAGCTATT+GGG 0.427068 1.2:+64254154 MS.gene07402:CDS
ATTGGGAAAACTTACTTAGC+TGG 0.432635 1.2:-64252416 None:intergenic
TCATGAAGTCTATCATTCCT+TGG 0.436607 1.2:-64253817 None:intergenic
GAGCTTTGTCTTGGTCTGCC+TGG 0.443783 1.2:+64252221 MS.gene07402:CDS
TTTGTTAAGGTTTCCATGGA+TGG 0.449811 1.2:+64253280 MS.gene07402:CDS
AAGGAGACTGAGCTTTGTCT+TGG 0.456647 1.2:+64252212 MS.gene07402:CDS
GGATCAGAAGCTATTGGGCT+TGG 0.459856 1.2:+64254159 MS.gene07402:CDS
CTTGGTCTGCCTGGTGGTGG+TGG 0.460328 1.2:+64252230 MS.gene07402:CDS
CATGAAGTCTATCATTCCTT+GGG 0.461454 1.2:-64253816 None:intergenic
TATTTCAGGGCTCAAGTAGT+TGG 0.461914 1.2:+64253157 MS.gene07402:intron
TGTCTTGGTCTGCCTGGTGG+TGG 0.462328 1.2:+64252227 MS.gene07402:CDS
TATATATTATAGGTAACTAT+GGG 0.462994 1.2:+64253792 MS.gene07402:intron
AAAGGAGAAGACCCTCCTTA+AGG 0.463373 1.2:+64252379 MS.gene07402:CDS
GTCGCCATCCTTATCTTCAT+AGG 0.465608 1.2:-64253888 None:intergenic
GAAGAACATGATGGCACAAA+AGG 0.465863 1.2:+64253204 MS.gene07402:CDS
CCTCTCTTCGCAGAAGCCCT+TGG 0.474958 1.2:-64252287 None:intergenic
ATTTAGACCAAAATCAGCTT+CGG 0.485181 1.2:-64254822 None:intergenic
GCTTAGCAGGGTCCTTAAGG+AGG 0.489152 1.2:-64252391 None:intergenic
GGCCACCAGTGAGGTCATAC+AGG 0.498221 1.2:+64253182 MS.gene07402:CDS
GGTCTGCCTGGTGGTGGTGG+CGG 0.503771 1.2:+64252233 MS.gene07402:CDS
CCATCCTTATCTTCATAGGT+TGG 0.508321 1.2:-64253884 None:intergenic
CGGTGGAGGTGGTTCTGAGG+TGG 0.509616 1.2:+64252259 MS.gene07402:CDS
GAATGAGAAGAGTGCTTCAA+AGG 0.512968 1.2:+64252361 MS.gene07402:CDS
TGCATTTGTTAAGGTTTCCA+TGG 0.525650 1.2:+64253276 MS.gene07402:CDS
CCGCCGCCGCCACCACCACC+AGG 0.530029 1.2:-64252239 None:intergenic
TGTGCCAACCTATGAAGATA+AGG 0.537235 1.2:+64253880 MS.gene07402:CDS
TCAGGGCTCAAGTAGTTGGT+TGG 0.538535 1.2:+64253161 MS.gene07402:intron
ACTTAGCTGGTGGCTTAGCA+GGG 0.540758 1.2:-64252403 None:intergenic
TTCTTCCTGTATGACCTCAC+TGG 0.545123 1.2:-64253187 None:intergenic
AAGGTAAGGTGCTCCATCCA+TGG 0.548189 1.2:-64253293 None:intergenic
AAGTCAACCTTACGAAGGTA+AGG 0.557851 1.2:-64253307 None:intergenic
TGCTCGTGGGAGATGTCCCA+TGG 0.560169 1.2:+64253915 MS.gene07402:CDS
GTTCTGAGGTGGAAACTCCA+AGG 0.563503 1.2:+64252270 MS.gene07402:CDS
TGGAGCACCTTACCTTCGTA+AGG 0.564503 1.2:+64253300 MS.gene07402:CDS
CCAAGGGCTTCTGCGAAGAG+AGG 0.567370 1.2:+64252287 MS.gene07402:CDS
CATTTCAGCACCAAGAGCAA+TGG 0.570918 1.2:+64254786 MS.gene07402:intron
ATGTTCAGCTCCTTCACCAC+TGG 0.578252 1.2:+64253376 MS.gene07402:CDS
TAATTAATTACCAGTGGTGA+AGG 0.579528 1.2:-64253386 None:intergenic
AATATGGCCACTATGGGGCA+TGG 0.587296 1.2:+64252179 None:intergenic
CTTAGCAGGGTCCTTAAGGA+GGG 0.587502 1.2:-64252390 None:intergenic
GTTCAATCCATGCCCCATAG+TGG 0.588585 1.2:-64252186 None:intergenic
AAGCGTCTGCGCATAATGAA+AGG 0.596352 1.2:+64254138 MS.gene07402:CDS
GGATGGCGACTGGATGCTCG+TGG 0.596688 1.2:+64253901 MS.gene07402:CDS
ATGAAGATAAGGATGGCGAC+TGG 0.598557 1.2:+64253891 MS.gene07402:CDS
GCTATAGGAACTTACTCCCA+TGG 0.598945 1.2:-64253932 None:intergenic
TTCTGAGGTGGAAACTCCAA+GGG 0.603496 1.2:+64252271 MS.gene07402:CDS
GGGAAAACTTACTTAGCTGG+TGG 0.604797 1.2:-64252413 None:intergenic
CGGCGGTGGAGGTGGTTCTG+AGG 0.606000 1.2:+64252256 MS.gene07402:CDS
TTCCTGTATGACCTCACTGG+TGG 0.606534 1.2:-64253184 None:intergenic
ATAGGTAACTATGGGGCCCA+AGG 0.608548 1.2:+64253800 MS.gene07402:intron
GAAGCTTAATCTTCAAACCA+AGG 0.609730 1.2:+64252331 MS.gene07402:CDS
CTTTGTCTTGGTCTGCCTGG+TGG 0.610253 1.2:+64252224 MS.gene07402:CDS
CTATAGGAACTTACTCCCAT+GGG 0.622755 1.2:-64253931 None:intergenic
GGGGCATGGATTGAACCTGA+AGG 0.627746 1.2:+64252193 MS.gene07402:CDS
CCAACCTATGAAGATAAGGA+TGG 0.646142 1.2:+64253884 MS.gene07402:CDS
GCTCGTGGGAGATGTCCCAT+GGG 0.650152 1.2:+64253916 MS.gene07402:CDS
GTCATACAGGAAGAACATGA+TGG 0.666998 1.2:+64253195 MS.gene07402:CDS
GATGGCGACTGGATGCTCGT+GGG 0.667120 1.2:+64253902 MS.gene07402:CDS
AAAAGAATATGGCCACTATG+GGG 0.689548 1.2:+64252174 None:intergenic
TAGTTGGTTGGCCACCAGTG+AGG 0.691007 1.2:+64253173 MS.gene07402:CDS
TTGTCAAGTCAACCTTACGA+AGG 0.716471 1.2:-64253312 None:intergenic
ACAAAAGGTTAGCAATACTG+AGG 0.716616 1.2:+64253219 MS.gene07402:CDS
ATATATTATAGGTAACTATG+GGG 0.717921 1.2:+64253793 MS.gene07402:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTTATATATATTAT+AGG + chr1.2:64253782-64253801 MS.gene07402:intron 0.0%
!! TTATTATTAATATTATTATA+AGG + chr1.2:64253639-64253658 MS.gene07402:intron 0.0%
!! TTAAAAAATTGCATAAAATT+TGG - chr1.2:64253075-64253094 None:intergenic 10.0%
!!! ATTATTAATTTGAAGAAAAA+TGG - chr1.2:64252997-64253016 None:intergenic 10.0%
!!! TTTTTTTTTTATAACTTTCT+TGG + chr1.2:64252468-64252487 MS.gene07402:intron 10.0%
!! AAAGAATAATTGAGATTTAT+AGG + chr1.2:64253107-64253126 MS.gene07402:intron 15.0%
!! AAATCATATTTACATTATGT+TGG - chr1.2:64254586-64254605 None:intergenic 15.0%
!! AAGAATAATTGAGATTTATA+GGG + chr1.2:64253108-64253127 MS.gene07402:intron 15.0%
!! AATATGAAAAAACGATATAA+GGG - chr1.2:64252767-64252786 None:intergenic 15.0%
!! AGATTAATTATTATCATCTT+GGG + chr1.2:64253713-64253732 MS.gene07402:intron 15.0%
!! ATATATATTATAGGTAACTA+TGG + chr1.2:64253791-64253810 MS.gene07402:intron 15.0%
!! ATGATAATTTAGATATTTGA+AGG - chr1.2:64254536-64254555 None:intergenic 15.0%
!! TAGATTAATTATTATCATCT+TGG + chr1.2:64253712-64253731 MS.gene07402:intron 15.0%
!! TATATATTATAGGTAACTAT+GGG + chr1.2:64253792-64253811 MS.gene07402:intron 15.0%
!! TGTAAATATGATTTAATAGT+TGG + chr1.2:64254592-64254611 MS.gene07402:intron 15.0%
!!! TGGTTATTTAAATTTTTTGA+AGG + chr1.2:64254097-64254116 MS.gene07402:intron 15.0%
!!! TTCAATGATTTATTTTTTGT+TGG - chr1.2:64254394-64254413 None:intergenic 15.0%
!! AAAAAATAGAGAGAGAAAAA+AGG - chr1.2:64252644-64252663 None:intergenic 20.0%
!! AACAAACATATATATGTACT+TGG + chr1.2:64254030-64254049 MS.gene07402:intron 20.0%
!! AAGTACATATATATGTTTGT+TGG - chr1.2:64254031-64254050 None:intergenic 20.0%
!! AATAACCAATGTTAATTTCA+TGG - chr1.2:64254085-64254104 None:intergenic 20.0%
!! AATAAGAAGATAGAAAAGAA+AGG + chr1.2:64252672-64252691 MS.gene07402:intron 20.0%
!! AATATTACAAATACAAGCAT+AGG - chr1.2:64253430-64253449 None:intergenic 20.0%
!! AATTTACTAAACAAGCATTA+TGG + chr1.2:64252809-64252828 MS.gene07402:intron 20.0%
!! AGTACATATATATGTTTGTT+GGG - chr1.2:64254030-64254049 None:intergenic 20.0%
!! ATAAACTATATCAAATAGCT+AGG - chr1.2:64253566-64253585 None:intergenic 20.0%
!! ATATATTATAGGTAACTATG+GGG + chr1.2:64253793-64253812 MS.gene07402:intron 20.0%
!! ATATGAAAAAACGATATAAG+GGG - chr1.2:64252766-64252785 None:intergenic 20.0%
!! ATTGAATTGAAAATCTTAGA+TGG + chr1.2:64254408-64254427 MS.gene07402:intron 20.0%
!! CAATATGAAAAAACGATATA+AGG - chr1.2:64252768-64252787 None:intergenic 20.0%
!! TATACTATTTGTATATGAGT+TGG + chr1.2:64252736-64252755 MS.gene07402:intron 20.0%
!!! AATATTTTGTACTTAACTCA+TGG + chr1.2:64254213-64254232 MS.gene07402:intron 20.0%
!!! TTGTTTAGTAAATGTTGTTT+TGG - chr1.2:64252525-64252544 None:intergenic 20.0%
!!! TTTATTTTTTGTTGGTCTTA+AGG - chr1.2:64254386-64254405 None:intergenic 20.0%
!!! TTTCTTTTCTATCTTCTTAT+TGG - chr1.2:64252673-64252692 None:intergenic 20.0%
!!! TTTTTTTCTATCTTCCATTT+GGG - chr1.2:64252844-64252863 None:intergenic 20.0%
!!! TTTTTTTTCTATCTTCCATT+TGG - chr1.2:64252845-64252864 None:intergenic 20.0%
! ATCAAAATTACAAGCATTTG+TGG - chr1.2:64252951-64252970 None:intergenic 25.0%
! GGCTATTTATTCTAACTTAT+TGG + chr1.2:64254746-64254765 MS.gene07402:intron 25.0%
! TAGTACTAATTAATTACCAG+TGG - chr1.2:64253395-64253414 None:intergenic 25.0%
! TCAAAATTACAAGCATTTGT+GGG - chr1.2:64252950-64252969 None:intergenic 25.0%
!! GTACATATATATGTTTGTTG+GGG - chr1.2:64254029-64254048 None:intergenic 25.0%
!!! ACTTTTTTTTGTTGTGATGA+TGG - chr1.2:64253618-64253637 None:intergenic 25.0%
!!! ATTTTTTGAAGGATGTTTGT+TGG + chr1.2:64254108-64254127 MS.gene07402:intron 25.0%
!!! TATAAGGTTTTAGATCTTGA+AGG + chr1.2:64253655-64253674 MS.gene07402:intron 25.0%
!!! TTATGCAATTTTTTAAGCCT+TGG + chr1.2:64253079-64253098 MS.gene07402:intron 25.0%
AAGCATGCAAGTACTTTAAT+TGG - chr1.2:64252437-64252456 None:intergenic 30.0%
AGCATGCAAGTACTTTAATT+GGG - chr1.2:64252436-64252455 None:intergenic 30.0%
ATATTTGTACAACTGTTCTG+TGG + chr1.2:64252569-64252588 MS.gene07402:intron 30.0%
CACATCCATGAAATTAACAT+TGG + chr1.2:64254077-64254096 MS.gene07402:intron 30.0%
CTATATCAAATAGCTAGGTA+TGG - chr1.2:64253561-64253580 None:intergenic 30.0%
TAATTAATTACCAGTGGTGA+AGG - chr1.2:64253389-64253408 None:intergenic 30.0%
TGATTGTAGTATATAGTAGC+TGG - chr1.2:64253975-64253994 None:intergenic 30.0%
TTCATGGATGTGTAAATATG+TGG - chr1.2:64254069-64254088 None:intergenic 30.0%
! CAATTATTCTTTTCTCTCCA+AGG - chr1.2:64253099-64253118 None:intergenic 30.0%
! TGGTCTTAAGGATTAAGTTT+AGG - chr1.2:64254374-64254393 None:intergenic 30.0%
AATAGCTAGGTATGGACTTT+AGG - chr1.2:64253553-64253572 None:intergenic 35.0%
ACAAAAGGTTAGCAATACTG+AGG + chr1.2:64253219-64253238 MS.gene07402:CDS 35.0%
ATAGAGAGAGAAAAAAGGAG+AGG - chr1.2:64252639-64252658 None:intergenic 35.0%
ATGAAAGGATCAGAAGCTAT+TGG + chr1.2:64254153-64254172 MS.gene07402:CDS 35.0%
ATTGGGAAAACTTACTTAGC+TGG - chr1.2:64252419-64252438 None:intergenic 35.0%
CATGAAGTCTATCATTCCTT+GGG - chr1.2:64253819-64253838 None:intergenic 35.0%
GAAGCTTAATCTTCAAACCA+AGG + chr1.2:64252331-64252350 MS.gene07402:CDS 35.0%
GGCATCAGATAAATCTTTGT+AGG - chr1.2:64253347-64253366 None:intergenic 35.0%
TAATCTTTCAGCATTCTGTC+TGG - chr1.2:64253485-64253504 None:intergenic 35.0%
TAGTATATAGTAGCTGGAGA+TGG - chr1.2:64253969-64253988 None:intergenic 35.0%
TATGGATTCTCAAACCCAAA+TGG + chr1.2:64252827-64252846 MS.gene07402:intron 35.0%
TCATGAAGTCTATCATTCCT+TGG - chr1.2:64253820-64253839 None:intergenic 35.0%
TGAAAGGATCAGAAGCTATT+GGG + chr1.2:64254154-64254173 MS.gene07402:CDS 35.0%
TGCATCAAGTATAATGCAAG+TGG - chr1.2:64254322-64254341 None:intergenic 35.0%
TGGATGTGTAAATATGTGGT+TGG - chr1.2:64254065-64254084 None:intergenic 35.0%
TTTAGATCTTGAAGGATGCA+TGG + chr1.2:64253663-64253682 MS.gene07402:intron 35.0%
TTTGTTAAGGTTTCCATGGA+TGG + chr1.2:64253280-64253299 MS.gene07402:CDS 35.0%
! TAACTCATGGAAGTATGCTT+TGG + chr1.2:64254226-64254245 MS.gene07402:intron 35.0%
! TGCATTTGTTAAGGTTTCCA+TGG + chr1.2:64253276-64253295 MS.gene07402:CDS 35.0%
AAGTCAACCTTACGAAGGTA+AGG - chr1.2:64253310-64253329 None:intergenic 40.0%
ACAAAATGACACGCACACAA+GGG - chr1.2:64254726-64254745 None:intergenic 40.0%
CCAACCTATGAAGATAAGGA+TGG + chr1.2:64253884-64253903 MS.gene07402:CDS 40.0%
CCATCCTTATCTTCATAGGT+TGG - chr1.2:64253887-64253906 None:intergenic 40.0%
CTATAGGAACTTACTCCCAT+GGG - chr1.2:64253934-64253953 None:intergenic 40.0%
CTTCTCATTCAGATCTTCCT+TGG - chr1.2:64252351-64252370 None:intergenic 40.0%
GAAGAACATGATGGCACAAA+AGG + chr1.2:64253204-64253223 MS.gene07402:CDS 40.0%
GTCATACAGGAAGAACATGA+TGG + chr1.2:64253195-64253214 MS.gene07402:CDS 40.0%
TATATAGTAGCTGGAGATGG+AGG - chr1.2:64253966-64253985 None:intergenic 40.0%
TATTTCAGGGCTCAAGTAGT+TGG + chr1.2:64253157-64253176 MS.gene07402:intron 40.0%
TGTGCCAACCTATGAAGATA+AGG + chr1.2:64253880-64253899 MS.gene07402:CDS 40.0%
TTGCATTTCTCCATTGCTCT+TGG - chr1.2:64254799-64254818 None:intergenic 40.0%
TTGTCAAGTCAACCTTACGA+AGG - chr1.2:64253315-64253334 None:intergenic 40.0%
! AGCATTCTGTCTGGTTTAGA+TGG - chr1.2:64253476-64253495 None:intergenic 40.0%
! CATGAATGAGAGCAAGTTGA+TGG + chr1.2:64253835-64253854 MS.gene07402:CDS 40.0%
! CATTCTGTCTGGTTTAGATG+GGG - chr1.2:64253474-64253493 None:intergenic 40.0%
! GCATTCTGTCTGGTTTAGAT+GGG - chr1.2:64253475-64253494 None:intergenic 40.0%
! TACTGCTGCTGCATTTGTTA+AGG + chr1.2:64253267-64253286 MS.gene07402:CDS 40.0%
!! GAATGAGAAGAGTGCTTCAA+AGG + chr1.2:64252361-64252380 MS.gene07402:CDS 40.0%
AAAATGACACGCACACAAGG+GGG - chr1.2:64254724-64254743 None:intergenic 45.0%
AAAGGAGAAGACCCTCCTTA+AGG + chr1.2:64252379-64252398 MS.gene07402:CDS 45.0%
AAGCGTCTGCGCATAATGAA+AGG + chr1.2:64254138-64254157 MS.gene07402:CDS 45.0%
ATGAAGATAAGGATGGCGAC+TGG + chr1.2:64253891-64253910 MS.gene07402:CDS 45.0%
ATGGAGGTTGGATGAGCTAT+AGG - chr1.2:64253950-64253969 None:intergenic 45.0%
CAAAATGACACGCACACAAG+GGG - chr1.2:64254725-64254744 None:intergenic 45.0%
CACAAAATGACACGCACACA+AGG - chr1.2:64254727-64254746 None:intergenic 45.0%
CATTTCAGCACCAAGAGCAA+TGG + chr1.2:64254786-64254805 MS.gene07402:intron 45.0%
GCTATAGGAACTTACTCCCA+TGG - chr1.2:64253935-64253954 None:intergenic 45.0%
GGGAAAACTTACTTAGCTGG+TGG - chr1.2:64252416-64252435 None:intergenic 45.0%
GTCGCCATCCTTATCTTCAT+AGG - chr1.2:64253891-64253910 None:intergenic 45.0%
TTCTTCCTGTATGACCTCAC+TGG - chr1.2:64253190-64253209 None:intergenic 45.0%
! AAGGAGACTGAGCTTTGTCT+TGG + chr1.2:64252212-64252231 MS.gene07402:CDS 45.0%
! GGTGAAGGAGCTGAACATTT+TGG - chr1.2:64253374-64253393 None:intergenic 45.0%
!! TTCTGAGGTGGAAACTCCAA+GGG + chr1.2:64252271-64252290 MS.gene07402:CDS 45.0%
!!! CTTGTGTGCGTGTCATTTTG+TGG + chr1.2:64254725-64254744 MS.gene07402:intron 45.0%
!!! GGAGCTGAACATTTTGGCTA+AGG - chr1.2:64253368-64253387 None:intergenic 45.0%
!! ATTATATTAATAATATTTCA+GGG + chr1.2:64253144-64253163 MS.gene07402:intron 5.0%
!! ATTTGTAATATTTATATATA+TGG + chr1.2:64253438-64253457 MS.gene07402:intron 5.0%
!! TATTATATTAATAATATTTC+AGG + chr1.2:64253143-64253162 MS.gene07402:intron 5.0%
AAATGACACGCACACAAGGG+GGG - chr1.2:64254723-64254742 None:intergenic 50.0%
ACTTAGCTGGTGGCTTAGCA+GGG - chr1.2:64252406-64252425 None:intergenic 50.0%
AGGATGCATGGCGATTGTTG+AGG + chr1.2:64253675-64253694 MS.gene07402:intron 50.0%
ATAGGTAACTATGGGGCCCA+AGG + chr1.2:64253800-64253819 MS.gene07402:intron 50.0%
ATGTTCAGCTCCTTCACCAC+TGG + chr1.2:64253376-64253395 MS.gene07402:CDS 50.0%
CTTAGCAGGGTCCTTAAGGA+GGG - chr1.2:64252393-64252412 None:intergenic 50.0%
GACAAAGCTCAGTCTCCTTC+AGG - chr1.2:64252211-64252230 None:intergenic 50.0%
GGATCAGAAGCTATTGGGCT+TGG + chr1.2:64254159-64254178 MS.gene07402:CDS 50.0%
GTTCAATCCATGCCCCATAG+TGG - chr1.2:64252189-64252208 None:intergenic 50.0%
TACTTAGCTGGTGGCTTAGC+AGG - chr1.2:64252407-64252426 None:intergenic 50.0%
TAGTAGCTGGAGATGGAGGT+TGG - chr1.2:64253962-64253981 None:intergenic 50.0%
TCAGGGCTCAAGTAGTTGGT+TGG + chr1.2:64253161-64253180 MS.gene07402:intron 50.0%
TTCCTGTATGACCTCACTGG+TGG - chr1.2:64253187-64253206 None:intergenic 50.0%
! AAGGTAAGGTGCTCCATCCA+TGG - chr1.2:64253296-64253315 None:intergenic 50.0%
! TGGAGCACCTTACCTTCGTA+AGG + chr1.2:64253300-64253319 MS.gene07402:CDS 50.0%
!! GTTCTGAGGTGGAAACTCCA+AGG + chr1.2:64252270-64252289 MS.gene07402:CDS 50.0%
CTTTGTCTTGGTCTGCCTGG+TGG + chr1.2:64252224-64252243 MS.gene07402:CDS 55.0%
GCTTAGCAGGGTCCTTAAGG+AGG - chr1.2:64252394-64252413 None:intergenic 55.0%
GTGGCTTAGCAGGGTCCTTA+AGG - chr1.2:64252397-64252416 None:intergenic 55.0%
! GAGCTTTGTCTTGGTCTGCC+TGG + chr1.2:64252221-64252240 MS.gene07402:CDS 55.0%
! GGGGCATGGATTGAACCTGA+AGG + chr1.2:64252193-64252212 MS.gene07402:CDS 55.0%
! TAGTTGGTTGGCCACCAGTG+AGG + chr1.2:64253173-64253192 MS.gene07402:CDS 55.0%
CCAAGGGCTTCTGCGAAGAG+AGG + chr1.2:64252287-64252306 MS.gene07402:CDS 60.0%
CCTCTCTTCGCAGAAGCCCT+TGG - chr1.2:64252290-64252309 None:intergenic 60.0%
GATGGCGACTGGATGCTCGT+GGG + chr1.2:64253902-64253921 MS.gene07402:CDS 60.0%
GCACACAAGGGGGGACTCAA+GGG - chr1.2:64254714-64254733 None:intergenic 60.0%
GCTCGTGGGAGATGTCCCAT+GGG + chr1.2:64253916-64253935 MS.gene07402:CDS 60.0%
GGCCACCAGTGAGGTCATAC+AGG + chr1.2:64253182-64253201 MS.gene07402:CDS 60.0%
TGCTCGTGGGAGATGTCCCA+TGG + chr1.2:64253915-64253934 MS.gene07402:CDS 60.0%
TGTCTTGGTCTGCCTGGTGG+TGG + chr1.2:64252227-64252246 MS.gene07402:CDS 60.0%
CGCACACAAGGGGGGACTCA+AGG - chr1.2:64254715-64254734 None:intergenic 65.0%
GGATGGCGACTGGATGCTCG+TGG + chr1.2:64253901-64253920 MS.gene07402:CDS 65.0%
!! CGGTGGAGGTGGTTCTGAGG+TGG + chr1.2:64252259-64252278 MS.gene07402:CDS 65.0%
!! CTTGGTCTGCCTGGTGGTGG+TGG + chr1.2:64252230-64252249 MS.gene07402:CDS 65.0%
! CGGCGGTGGAGGTGGTTCTG+AGG + chr1.2:64252256-64252275 MS.gene07402:CDS 70.0%
!! GGTCTGCCTGGTGGTGGTGG+CGG + chr1.2:64252233-64252252 MS.gene07402:CDS 70.0%
!! CTGCCTGGTGGTGGTGGCGG+CGG + chr1.2:64252236-64252255 MS.gene07402:CDS 75.0%
!!! CCTGGTGGTGGTGGCGGCGG+CGG + chr1.2:64252239-64252258 MS.gene07402:CDS 80.0%
! CCGCCGCCGCCACCACCACC+AGG - chr1.2:64252242-64252261 None:intergenic 85.0%
!! GGTGGCGGCGGCGGTGGAGG+TGG + chr1.2:64252248-64252267 MS.gene07402:CDS 85.0%
!!! GGTGGTGGCGGCGGCGGTGG+AGG + chr1.2:64252245-64252264 MS.gene07402:CDS 85.0%
!!! GGTGGTGGTGGCGGCGGCGG+TGG + chr1.2:64252242-64252261 MS.gene07402:CDS 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 64252182 64254831 64252182 ID=MS.gene07402
chr1.2 mRNA 64252182 64254831 64252182 ID=MS.gene07402.t1;Parent=MS.gene07402
chr1.2 exon 64252182 64252423 64252182 ID=MS.gene07402.t1.exon1;Parent=MS.gene07402.t1
chr1.2 CDS 64252182 64252423 64252182 ID=cds.MS.gene07402.t1;Parent=MS.gene07402.t1
chr1.2 exon 64253165 64253397 64253165 ID=MS.gene07402.t1.exon2;Parent=MS.gene07402.t1
chr1.2 CDS 64253165 64253397 64253165 ID=cds.MS.gene07402.t1;Parent=MS.gene07402.t1
chr1.2 exon 64253804 64253939 64253804 ID=MS.gene07402.t1.exon3;Parent=MS.gene07402.t1
chr1.2 CDS 64253804 64253939 64253804 ID=cds.MS.gene07402.t1;Parent=MS.gene07402.t1
chr1.2 exon 64254119 64254180 64254119 ID=MS.gene07402.t1.exon4;Parent=MS.gene07402.t1
chr1.2 CDS 64254119 64254180 64254119 ID=cds.MS.gene07402.t1;Parent=MS.gene07402.t1
chr1.2 exon 64254794 64254831 64254794 ID=MS.gene07402.t1.exon5;Parent=MS.gene07402.t1
chr1.2 CDS 64254794 64254831 64254794 ID=cds.MS.gene07402.t1;Parent=MS.gene07402.t1
Gene Sequence

>MS.gene07402

ATGGCCACTATGGGGCATGGATTGAACCTGAAGGAGACTGAGCTTTGTCTTGGTCTGCCTGGTGGTGGTGGCGGCGGCGGTGGAGGTGGTTCTGAGGTGGAAACTCCAAGGGCTTCTGCGAAGAGAGGTTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAAACCAAGGAAGATCTGAATGAGAAGAGTGCTTCAAAGGAGAAGACCCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGTAAGTTTTCCCAATTAAAGTACTTGCATGCTTTCTTGTCTAGTTTTTTTTTTTATAACTTTCTTGGATCTAGCATTATAGATTTCACTTTTTGAACACCAAAACAACATTTACTAAACAAGCACGTATTTACTTATAAGAAATGATATTTGTACAACTGTTCTGTGGTAATTTTTTGACAATTTTCTCTCAGTCACGTTATGTTATTATTTCCTCTCCTTTTTTCTCTCTCTATTTTTTTTTTTACCAATAAGAAGATAGAAAAGAAAGGCTGTCATAAAATAGTTGTATAAATGTTATTACATTTACATGTATACTATTTGTATATGAGTTGGAGTACCCCTTATATCGTTTTTTCATATTGTACTTTGTTGTTCAAAAACATAATTTACTAAACAAGCATTATGGATTCTCAAACCCAAATGGAAGATAGAAAAAAAAGTGATAAGTTGATATATGCAACATCTTATAATGTTTTTTATAAGTAATTTTTTTATTAATTGAAATATAAAGAGTTCTCTAACCCACAAATGCTTGTAATTTTGATGTTCTCTTTTTCTTTTCTTTTTTCCATTTTTCTTCAAATTAATAATATATGTTTTCTTAGAGCTGCAGTATATAGTTTATAGTTTGCATGTATACGAGTTTCCAAATTTTATGCAATTTTTTAAGCCTTGGAGAGAAAAGAATAATTGAGATTTATAGGGATTTGAAATGAATATTATATTAATAATATTTCAGGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAGCAATACTGAGGACACTGAGAAGACAACAAGTAACACTACTGCTGCTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTGACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAATTAATTAGTACTACATTAAAAATCTCCTATGCTTGTATTTGTAATATTTATATATATGGTTGTTTCAAACCCCATCTAAACCAGACAGAATGCTGAAAGATTAATCTCTCGAGTCACGTAGAATCACACTAGATAGTAAAACTTTCTTCCTAAAGTCCATACCTAGCTATTTGATATAGTTTATTAATAAATCAGTATATAGTATATTGAAGACCATCATCACAACAAAAAAAAGTATTATTATTAATATTATTATAAGGTTTTAGATCTTGAAGGATGCATGGCGATTGTTGAGGATGCATGTGCTAGTTAGATTAATTATTATCATCTTGGGATTGTTACATTCTAGATTCATGATTAATTTGAGTGATTAATTAATTTATTAATTTATATATATTATAGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGTAAGTTCCTATAGCTCATCCAACCTCCATCTCCAGCTACTATATACTACAATCATTAATTTATTTTTATATCTATATAAATTAGTCCCCAACAAACATATATATGTACTTGGTTTAATTTACCAACCACATATTTACACATCCATGAAATTAACATTGGTTATTTAAATTTTTTGAAGGATGTTTGTTGGATCATGCAAGCGTCTGCGCATAATGAAAGGATCAGAAGCTATTGGGCTTGGTATGAATCTTTCTATATATCTTACTTGCATTAATATTTTGTACTTAACTCATGGAAGTATGCTTTGGAATTACTAATTCTATTATAAGTATGAATTGAACTTAGATAGTGTCAAAATTACTCGACTCTATGCACTAACCACTTGCATTATACTTGATGCACTAATAATTTTCAATAACATTAAGTAGAACCTAAACTTAATCCTTAAGACCAACAAAAAATAAATCATTGAATTGAAAATCTTAGATGGAAATGAAGTTCACGAAATTTAATGTGATTTTAAAACTACTTGATATATACTTCATTTCATAATTTTATTTTAAATATGTATTTACTATTAAATTATTATAAACCTTCAAATATCTAAATTATCATGACTAGTTGTGTTTTGTGTACACATGACCAACATAATGTAAATATGATTTAATAGTTGGAATTAAATATTTAAAATTATTACAAGTTTTTTTAGTAACATAAAGTTATTAAAAAATACTAAATGTTTTACTTGTACTATATATAATTCATTCACACCCTTGAGTCCCCCCTTGTGTGCGTGTCATTTTGTGGCTATTTATTCTAACTTATTGGCATCTAATTTTTATGTACATTTCAGCACCAAGAGCAATGGAGAAATGCAAAAACCGAAGCTGA
Protein sequence

>MS.gene07402.t1

MATMGHGLNLKETELCLGLPGGGGGGGGGGSEVETPRASAKRGFSETVDLKLNLQTKEDLNEKSASKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVSNTEDTEKTTSNTTAAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS