Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062256.t1 | XP_003591806.1 | 99.2 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 9.80E-120 | 439.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062256.t1 | Q38832 | 73.7 | 236 | 47 | 4 | 8 | 236 | 1 | 228 | 4.2e-87 | 322.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062256.t1 | G7I476 | 99.2 | 236 | 2 | 0 | 1 | 236 | 1 | 236 | 7.1e-120 | 439.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene062256.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene005133 | MS.gene062256 | PPI |
MS.gene062256 | MS.gene70825 | PPI |
MS.gene062256 | MS.gene004875 | PPI |
MS.gene062256 | MS.gene07402 | PPI |
MS.gene062256 | MS.gene85573 | PPI |
MS.gene062256 | MS.gene69940 | PPI |
MS.gene44001 | MS.gene062256 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062256.t1 | MTR_1g093240 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 2.42e-176 | 484 |
MS.gene062256.t1 | MTR_1g093240 | 99.554 | 224 | 1 | 0 | 1 | 224 | 1 | 224 | 5.12e-166 | 457 |
MS.gene062256.t1 | MTR_1g093240 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 2.54e-150 | 417 |
MS.gene062256.t1 | MTR_1g070520 | 68.619 | 239 | 51 | 7 | 12 | 236 | 17 | 245 | 2.28e-102 | 297 |
MS.gene062256.t1 | MTR_7g096090 | 63.710 | 248 | 67 | 5 | 6 | 236 | 9 | 250 | 7.87e-98 | 286 |
MS.gene062256.t1 | MTR_1g080860 | 63.115 | 244 | 70 | 6 | 8 | 236 | 15 | 253 | 1.96e-96 | 282 |
MS.gene062256.t1 | MTR_1g080860 | 61.638 | 232 | 69 | 6 | 8 | 224 | 15 | 241 | 5.40e-87 | 258 |
MS.gene062256.t1 | MTR_6g488150 | 50.973 | 257 | 85 | 6 | 6 | 236 | 13 | 254 | 8.32e-79 | 238 |
MS.gene062256.t1 | MTR_8g103030 | 48.364 | 275 | 93 | 8 | 7 | 236 | 23 | 293 | 6.80e-71 | 219 |
MS.gene062256.t1 | MTR_5g030710 | 48.252 | 286 | 90 | 7 | 8 | 236 | 51 | 335 | 1.53e-70 | 219 |
MS.gene062256.t1 | MTR_8g067530 | 44.755 | 286 | 101 | 5 | 6 | 236 | 73 | 356 | 1.08e-67 | 213 |
MS.gene062256.t1 | MTR_2g101500 | 43.894 | 303 | 95 | 8 | 8 | 236 | 25 | 326 | 2.53e-66 | 208 |
MS.gene062256.t1 | MTR_5g067350 | 62.893 | 159 | 57 | 2 | 78 | 236 | 191 | 347 | 3.27e-66 | 208 |
MS.gene062256.t1 | MTR_1g070830 | 46.429 | 224 | 79 | 6 | 8 | 224 | 12 | 201 | 1.05e-53 | 172 |
MS.gene062256.t1 | MTR_1g076270 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 5.73e-52 | 166 |
MS.gene062256.t1 | MTR_1g093350 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 5.73e-52 | 166 |
MS.gene062256.t1 | MTR_1g040675 | 42.986 | 221 | 83 | 6 | 8 | 224 | 1 | 182 | 2.33e-49 | 160 |
MS.gene062256.t1 | MTR_4g011880 | 41.304 | 230 | 75 | 7 | 1 | 228 | 1 | 172 | 2.05e-38 | 132 |
MS.gene062256.t1 | MTR_1g069495 | 42.623 | 183 | 72 | 3 | 82 | 231 | 81 | 263 | 1.69e-37 | 132 |
MS.gene062256.t1 | MTR_1g040675 | 39.303 | 201 | 79 | 6 | 8 | 204 | 1 | 162 | 5.16e-37 | 127 |
MS.gene062256.t1 | MTR_2g102490 | 39.437 | 213 | 81 | 7 | 10 | 219 | 16 | 183 | 6.59e-37 | 129 |
MS.gene062256.t1 | MTR_6g488150 | 40.331 | 181 | 69 | 5 | 5 | 161 | 12 | 177 | 2.49e-33 | 119 |
MS.gene062256.t1 | MTR_8g014520 | 37.714 | 175 | 89 | 3 | 64 | 220 | 88 | 260 | 3.54e-29 | 110 |
MS.gene062256.t1 | MTR_8g014520 | 37.714 | 175 | 89 | 3 | 64 | 220 | 88 | 260 | 3.65e-29 | 110 |
MS.gene062256.t1 | MTR_2g100780 | 38.824 | 170 | 73 | 5 | 77 | 220 | 90 | 254 | 4.65e-28 | 107 |
MS.gene062256.t1 | MTR_2g100780 | 38.824 | 170 | 73 | 5 | 77 | 220 | 90 | 254 | 7.79e-28 | 107 |
MS.gene062256.t1 | MTR_5g067350 | 58.537 | 82 | 33 | 1 | 78 | 159 | 191 | 271 | 3.02e-25 | 100 |
MS.gene062256.t1 | MTR_4g124300 | 32.867 | 143 | 67 | 4 | 81 | 221 | 69 | 184 | 3.12e-19 | 82.4 |
MS.gene062256.t1 | MTR_1g085750 | 41.509 | 106 | 48 | 3 | 113 | 217 | 78 | 170 | 5.92e-17 | 76.3 |
MS.gene062256.t1 | MTR_3g106850 | 26.950 | 141 | 83 | 3 | 83 | 221 | 88 | 210 | 6.71e-17 | 77.0 |
MS.gene062256.t1 | MTR_4g115075 | 26.667 | 135 | 78 | 1 | 84 | 218 | 93 | 206 | 4.42e-15 | 71.6 |
MS.gene062256.t1 | MTR_7g110790 | 39.604 | 101 | 47 | 4 | 118 | 217 | 68 | 155 | 2.53e-14 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062256.t1 | AT4G14550 | 75.000 | 236 | 44 | 4 | 8 | 236 | 1 | 228 | 9.70e-121 | 343 |
MS.gene062256.t1 | AT3G23050 | 70.683 | 249 | 50 | 6 | 4 | 236 | 2 | 243 | 1.94e-117 | 335 |
MS.gene062256.t1 | AT4G14550 | 74.107 | 224 | 43 | 4 | 8 | 224 | 1 | 216 | 1.62e-112 | 322 |
MS.gene062256.t1 | AT1G04250 | 65.272 | 239 | 57 | 5 | 8 | 236 | 7 | 229 | 1.93e-103 | 299 |
MS.gene062256.t1 | AT3G04730 | 64.050 | 242 | 67 | 4 | 8 | 236 | 2 | 236 | 1.16e-102 | 297 |
MS.gene062256.t1 | AT4G14550 | 72.414 | 203 | 41 | 4 | 8 | 203 | 1 | 195 | 7.16e-98 | 284 |
MS.gene062256.t1 | AT3G23050 | 67.593 | 216 | 48 | 5 | 4 | 204 | 2 | 210 | 8.95e-95 | 276 |
MS.gene062256.t1 | AT4G29080 | 48.699 | 269 | 99 | 8 | 6 | 235 | 36 | 304 | 3.49e-71 | 220 |
MS.gene062256.t1 | AT5G65670 | 44.964 | 278 | 102 | 6 | 8 | 236 | 61 | 336 | 1.50e-66 | 209 |
MS.gene062256.t1 | AT5G65670 | 44.643 | 280 | 102 | 7 | 8 | 236 | 61 | 338 | 1.41e-64 | 204 |
MS.gene062256.t1 | AT2G22670 | 52.804 | 214 | 80 | 5 | 41 | 235 | 107 | 318 | 3.50e-63 | 200 |
MS.gene062256.t1 | AT2G22670 | 52.804 | 214 | 80 | 5 | 41 | 235 | 107 | 318 | 3.50e-63 | 200 |
MS.gene062256.t1 | AT2G22670 | 52.804 | 214 | 80 | 5 | 41 | 235 | 124 | 335 | 5.32e-63 | 200 |
MS.gene062256.t1 | AT4G14550 | 66.667 | 159 | 38 | 4 | 8 | 159 | 1 | 151 | 1.81e-62 | 193 |
MS.gene062256.t1 | AT2G22670 | 51.869 | 214 | 80 | 6 | 41 | 235 | 107 | 316 | 6.32e-60 | 191 |
MS.gene062256.t1 | AT2G22670 | 51.869 | 214 | 80 | 6 | 41 | 235 | 107 | 316 | 6.32e-60 | 191 |
MS.gene062256.t1 | AT3G23050 | 60.694 | 173 | 46 | 5 | 4 | 161 | 2 | 167 | 1.83e-59 | 185 |
MS.gene062256.t1 | AT1G04240 | 47.511 | 221 | 80 | 7 | 4 | 224 | 1 | 185 | 7.30e-55 | 174 |
MS.gene062256.t1 | AT1G04240 | 46.875 | 224 | 83 | 7 | 1 | 224 | 98 | 285 | 4.97e-54 | 175 |
MS.gene062256.t1 | AT5G43700 | 48.165 | 218 | 67 | 7 | 8 | 225 | 11 | 182 | 1.59e-52 | 168 |
MS.gene062256.t1 | AT3G23030 | 45.161 | 217 | 64 | 6 | 8 | 224 | 9 | 170 | 3.51e-49 | 159 |
MS.gene062256.t1 | AT3G23030 | 45.161 | 217 | 64 | 6 | 8 | 224 | 96 | 257 | 2.26e-48 | 160 |
MS.gene062256.t1 | AT4G14560 | 43.056 | 216 | 67 | 5 | 6 | 221 | 5 | 164 | 6.97e-44 | 145 |
MS.gene062256.t1 | AT1G15580 | 40.639 | 219 | 70 | 4 | 1 | 219 | 1 | 159 | 2.45e-43 | 144 |
MS.gene062256.t1 | AT3G15540 | 40.086 | 232 | 95 | 7 | 6 | 231 | 4 | 197 | 7.25e-41 | 139 |
MS.gene062256.t1 | AT2G33310 | 44.828 | 174 | 72 | 6 | 76 | 230 | 68 | 236 | 4.82e-39 | 135 |
MS.gene062256.t1 | AT2G33310 | 44.828 | 174 | 72 | 6 | 76 | 230 | 68 | 236 | 4.82e-39 | 135 |
MS.gene062256.t1 | AT2G33310 | 44.767 | 172 | 71 | 6 | 78 | 230 | 71 | 237 | 6.69e-38 | 132 |
MS.gene062256.t1 | AT1G52830 | 38.813 | 219 | 96 | 6 | 6 | 224 | 4 | 184 | 8.81e-38 | 130 |
MS.gene062256.t1 | AT4G28640 | 48.408 | 157 | 65 | 5 | 83 | 225 | 88 | 242 | 1.68e-35 | 126 |
MS.gene062256.t1 | AT1G04550 | 41.477 | 176 | 76 | 3 | 76 | 231 | 62 | 230 | 2.35e-35 | 126 |
MS.gene062256.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 2.87e-35 | 126 |
MS.gene062256.t1 | AT3G16500 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 4.74e-34 | 123 |
MS.gene062256.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 5.20e-34 | 124 |
MS.gene062256.t1 | AT3G16500 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 7.28e-34 | 122 |
MS.gene062256.t1 | AT5G25890 | 39.157 | 166 | 77 | 3 | 62 | 227 | 29 | 170 | 2.66e-30 | 111 |
MS.gene062256.t1 | AT1G04100 | 40.719 | 167 | 70 | 4 | 85 | 224 | 95 | 259 | 7.52e-30 | 112 |
MS.gene062256.t1 | AT1G51950 | 40.625 | 160 | 74 | 4 | 80 | 220 | 93 | 250 | 2.22e-28 | 108 |
MS.gene062256.t1 | AT3G17600 | 32.877 | 146 | 68 | 4 | 75 | 217 | 36 | 154 | 2.19e-21 | 87.4 |
MS.gene062256.t1 | AT2G46990 | 39.623 | 106 | 51 | 2 | 114 | 219 | 80 | 172 | 7.85e-19 | 81.3 |
MS.gene062256.t1 | AT3G62100 | 38.889 | 108 | 53 | 2 | 110 | 217 | 74 | 168 | 1.62e-18 | 80.1 |
MS.gene062256.t1 | AT2G46990 | 40.659 | 91 | 41 | 2 | 114 | 204 | 80 | 157 | 3.91e-14 | 68.2 |
MS.gene062256.t1 | AT4G32280 | 23.944 | 213 | 105 | 6 | 50 | 232 | 64 | 249 | 1.04e-13 | 68.9 |
MS.gene062256.t1 | AT1G80390 | 34.000 | 150 | 61 | 3 | 9 | 158 | 15 | 126 | 1.57e-13 | 65.9 |
MS.gene062256.t1 | AT3G62100 | 37.895 | 95 | 46 | 2 | 110 | 204 | 74 | 155 | 2.06e-13 | 66.2 |
MS.gene062256.t1 | AT4G32280 | 29.204 | 113 | 56 | 2 | 120 | 232 | 119 | 207 | 1.46e-12 | 65.1 |
Find 79 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGAAGGAGCTGAACATTT+TGG | 0.275554 | 1.1:+57093483 | None:intergenic |
GGTGGTGGTGGCGGCGGCGG+TGG | 0.280712 | 1.1:-57094613 | MS.gene062256:CDS |
ATATATATTATAGGTAACTA+TGG | 0.289007 | 1.1:-57093076 | MS.gene062256:intron |
CTTCTCATTCAGATCTTCCT+TGG | 0.341646 | 1.1:+57094507 | None:intergenic |
GGTGGTGGCGGCGGCGGTGG+AGG | 0.343665 | 1.1:-57094610 | MS.gene062256:CDS |
TACTTAGCTGGTGGCTTAGC+AGG | 0.347183 | 1.1:+57094451 | None:intergenic |
GGTGGCGGCGGCGGTGGAGG+TGG | 0.350359 | 1.1:-57094607 | MS.gene062256:CDS |
TTGCATTTCTCCATTGCTCT+TGG | 0.358710 | 1.1:+57092072 | None:intergenic |
GACAAAGCTCAGTCTCCTTC+AGG | 0.370771 | 1.1:+57094647 | None:intergenic |
ATGAAAGGATCAGAAGCTAT+TGG | 0.371063 | 1.1:-57092714 | MS.gene062256:CDS |
CCTGGTGGTGGTGGCGGCGG+CGG | 0.379613 | 1.1:-57094616 | MS.gene062256:CDS |
GGCATCAGATAAATCTTTGT+AGG | 0.380510 | 1.1:+57093510 | None:intergenic |
GTGGCTTAGCAGGGTCCTTA+AGG | 0.389548 | 1.1:+57094461 | None:intergenic |
TACTGCTGCTGCATTTGTTA+AGG | 0.392669 | 1.1:-57093587 | MS.gene062256:CDS |
CATGAATGAGAGCAAGTTGA+TGG | 0.395903 | 1.1:-57093032 | MS.gene062256:CDS |
CTGCCTGGTGGTGGTGGCGG+CGG | 0.419116 | 1.1:-57094619 | MS.gene062256:CDS |
TGAAAGGATCAGAAGCTATT+GGG | 0.427068 | 1.1:-57092713 | MS.gene062256:CDS |
ATTGGGAAAACTTACTTAGC+TGG | 0.432635 | 1.1:+57094439 | None:intergenic |
TCATGAAGTCTATCATTCCT+TGG | 0.436607 | 1.1:+57093050 | None:intergenic |
GAGCTTTGTCTTGGTCTGCC+TGG | 0.443783 | 1.1:-57094634 | MS.gene062256:CDS |
TTTGTTAAGGTTTCCATGGA+TGG | 0.449811 | 1.1:-57093574 | MS.gene062256:CDS |
AAGGAGACTGAGCTTTGTCT+TGG | 0.456647 | 1.1:-57094643 | MS.gene062256:CDS |
GGATCAGAAGCTATTGGGCT+TGG | 0.459856 | 1.1:-57092708 | MS.gene062256:intron |
CTTGGTCTGCCTGGTGGTGG+TGG | 0.460328 | 1.1:-57094625 | MS.gene062256:CDS |
CATGAAGTCTATCATTCCTT+GGG | 0.461454 | 1.1:+57093051 | None:intergenic |
TATTTCAGGGCTCAAGTAGT+TGG | 0.461914 | 1.1:-57093697 | MS.gene062256:intron |
TGTCTTGGTCTGCCTGGTGG+TGG | 0.462328 | 1.1:-57094628 | MS.gene062256:CDS |
TATATATTATAGGTAACTAT+GGG | 0.462994 | 1.1:-57093075 | MS.gene062256:intron |
AAAGGAGAAGACCCTCCTTA+AGG | 0.463373 | 1.1:-57094476 | MS.gene062256:CDS |
GTCGCCATCCTTATCTTCAT+AGG | 0.465608 | 1.1:+57092979 | None:intergenic |
GAAGAACATGATGGCACAAA+AGG | 0.465863 | 1.1:-57093650 | MS.gene062256:CDS |
CCTCTCTTCGCAGAAGCCCT+TGG | 0.474958 | 1.1:+57094568 | None:intergenic |
ATTTAGACCAAAATCAGCTT+CGG | 0.485181 | 1.1:+57092046 | None:intergenic |
GCTTAGCAGGGTCCTTAAGG+AGG | 0.489152 | 1.1:+57094464 | None:intergenic |
GGCCACCAGTGAGGTCATAC+AGG | 0.498221 | 1.1:-57093672 | MS.gene062256:CDS |
GGTCTGCCTGGTGGTGGTGG+CGG | 0.503771 | 1.1:-57094622 | MS.gene062256:CDS |
CCATCCTTATCTTCATAGGT+TGG | 0.508321 | 1.1:+57092983 | None:intergenic |
CGGTGGAGGTGGTTCTGAGG+TGG | 0.509616 | 1.1:-57094596 | MS.gene062256:CDS |
GAATGAGAAGAGTGCTTCAA+AGG | 0.512968 | 1.1:-57094494 | MS.gene062256:CDS |
TGCATTTGTTAAGGTTTCCA+TGG | 0.525650 | 1.1:-57093578 | MS.gene062256:CDS |
CCGCCGCCGCCACCACCACC+AGG | 0.530029 | 1.1:+57094616 | None:intergenic |
TGTGCCAACCTATGAAGATA+AGG | 0.537235 | 1.1:-57092987 | MS.gene062256:CDS |
TCAGGGCTCAAGTAGTTGGT+TGG | 0.538535 | 1.1:-57093693 | MS.gene062256:intron |
ACTTAGCTGGTGGCTTAGCA+GGG | 0.540758 | 1.1:+57094452 | None:intergenic |
TTCTTCCTGTATGACCTCAC+TGG | 0.545123 | 1.1:+57093667 | None:intergenic |
AAGGTAAGGTGCTCCATCCA+TGG | 0.548189 | 1.1:+57093561 | None:intergenic |
AAGTCAACCTTACGAAGGTA+AGG | 0.557851 | 1.1:+57093547 | None:intergenic |
TGCTCGTGGGAGATGTCCCA+TGG | 0.560169 | 1.1:-57092952 | MS.gene062256:CDS |
GTTCTGAGGTGGAAACTCCA+AGG | 0.563503 | 1.1:-57094585 | MS.gene062256:CDS |
TGGAGCACCTTACCTTCGTA+AGG | 0.564503 | 1.1:-57093554 | MS.gene062256:CDS |
CCAAGGGCTTCTGCGAAGAG+AGG | 0.567370 | 1.1:-57094568 | MS.gene062256:CDS |
CATTTCAGCACCAAGAGCAA+TGG | 0.570918 | 1.1:-57092082 | MS.gene062256:intron |
ATGTTCAGCTCCTTCACCAC+TGG | 0.578252 | 1.1:-57093478 | MS.gene062256:intron |
TAATTAATTACCAGTGGTGA+AGG | 0.579528 | 1.1:+57093468 | None:intergenic |
AATATGGCCACTATGGGGCA+TGG | 0.587296 | 1.1:-57094676 | MS.gene062256:CDS |
CTTAGCAGGGTCCTTAAGGA+GGG | 0.587502 | 1.1:+57094465 | None:intergenic |
GTTCAATCCATGCCCCATAG+TGG | 0.588585 | 1.1:+57094669 | None:intergenic |
AAGCGTCTGCGCATAATGAA+AGG | 0.596352 | 1.1:-57092729 | MS.gene062256:CDS |
GGATGGCGACTGGATGCTCG+TGG | 0.596688 | 1.1:-57092966 | MS.gene062256:CDS |
ATGAAGATAAGGATGGCGAC+TGG | 0.598557 | 1.1:-57092976 | MS.gene062256:CDS |
GCTATAGGAACTTACTCCCA+TGG | 0.598945 | 1.1:+57092935 | None:intergenic |
TTCTGAGGTGGAAACTCCAA+GGG | 0.603496 | 1.1:-57094584 | MS.gene062256:CDS |
GGGAAAACTTACTTAGCTGG+TGG | 0.604797 | 1.1:+57094442 | None:intergenic |
CGGCGGTGGAGGTGGTTCTG+AGG | 0.606000 | 1.1:-57094599 | MS.gene062256:CDS |
TTCCTGTATGACCTCACTGG+TGG | 0.606534 | 1.1:+57093670 | None:intergenic |
ATAGGTAACTATGGGGCCCA+AGG | 0.608548 | 1.1:-57093067 | MS.gene062256:intron |
GAAGCTTAATCTTCAAACCA+AGG | 0.609730 | 1.1:-57094524 | MS.gene062256:CDS |
CTTTGTCTTGGTCTGCCTGG+TGG | 0.610253 | 1.1:-57094631 | MS.gene062256:CDS |
CTATAGGAACTTACTCCCAT+GGG | 0.622755 | 1.1:+57092936 | None:intergenic |
GGGGCATGGATTGAACCTGA+AGG | 0.627746 | 1.1:-57094662 | MS.gene062256:CDS |
CCAACCTATGAAGATAAGGA+TGG | 0.646142 | 1.1:-57092983 | MS.gene062256:CDS |
GCTCGTGGGAGATGTCCCAT+GGG | 0.650152 | 1.1:-57092951 | MS.gene062256:CDS |
GTCATACAGGAAGAACATGA+TGG | 0.666998 | 1.1:-57093659 | MS.gene062256:CDS |
GATGGCGACTGGATGCTCGT+GGG | 0.667120 | 1.1:-57092965 | MS.gene062256:CDS |
AAAAGAATATGGCCACTATG+GGG | 0.689548 | 1.1:-57094681 | None:intergenic |
TAGTTGGTTGGCCACCAGTG+AGG | 0.691007 | 1.1:-57093681 | MS.gene062256:CDS |
ACAAAAGGTTAACAATACTG+AGG | 0.707970 | 1.1:-57093635 | MS.gene062256:CDS |
TTGTCAAGTCAACCTTACGA+AGG | 0.716471 | 1.1:+57093542 | None:intergenic |
ATATATTATAGGTAACTATG+GGG | 0.717921 | 1.1:-57093074 | MS.gene062256:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTAATTTATATATATTAT+AGG | - | chr1.1:57093647-57093666 | MS.gene062256:CDS | 0.0% |
!! | TTATTATTAATATTATTATA+AGG | - | chr1.1:57093504-57093523 | MS.gene062256:CDS | 0.0% |
!! | TTAAAAAATTGCATAAAATT+TGG | + | chr1.1:57092953-57092972 | None:intergenic | 10.0% |
!!! | ATTATTAATTTGAAGAAAAA+TGG | + | chr1.1:57092875-57092894 | None:intergenic | 10.0% |
!!! | TTTTTTTTTTATAACTTTCT+TGG | - | chr1.1:57092345-57092364 | MS.gene062256:intron | 10.0% |
!! | AAAAAACATATATATGTACT+TGG | - | chr1.1:57093895-57093914 | MS.gene062256:intron | 15.0% |
!! | AAAGAATAATTGAGATTTAT+AGG | - | chr1.1:57092985-57093004 | MS.gene062256:CDS | 15.0% |
!! | AAATCATATTTACATTATGT+TGG | + | chr1.1:57094450-57094469 | None:intergenic | 15.0% |
!! | AAGAATAATTGAGATTTATA+GGG | - | chr1.1:57092986-57093005 | MS.gene062256:CDS | 15.0% |
!! | AATATGAAAAAACGATATAA+GGG | + | chr1.1:57092645-57092664 | None:intergenic | 15.0% |
!! | AGATTAATTATTATCATCTT+GGG | - | chr1.1:57093578-57093597 | MS.gene062256:CDS | 15.0% |
!! | ATATATATTATAGGTAACTA+TGG | - | chr1.1:57093656-57093675 | MS.gene062256:CDS | 15.0% |
!! | ATGATAATTTAGATATTTGA+AGG | + | chr1.1:57094400-57094419 | None:intergenic | 15.0% |
!! | TAGATTAATTATTATCATCT+TGG | - | chr1.1:57093577-57093596 | MS.gene062256:CDS | 15.0% |
!! | TATATATTATAGGTAACTAT+GGG | - | chr1.1:57093657-57093676 | MS.gene062256:CDS | 15.0% |
!! | TGTAAATATGATTTAATAGT+TGG | - | chr1.1:57094456-57094475 | MS.gene062256:CDS | 15.0% |
!!! | AAGTACATATATATGTTTTT+TGG | + | chr1.1:57093896-57093915 | None:intergenic | 15.0% |
!!! | AGTACATATATATGTTTTTT+GGG | + | chr1.1:57093895-57093914 | None:intergenic | 15.0% |
!!! | TGGTTATTTAAATTTTTTGA+AGG | - | chr1.1:57093962-57093981 | MS.gene062256:intron | 15.0% |
!!! | TTCAATGATTTATTTTTTGT+TGG | + | chr1.1:57094258-57094277 | None:intergenic | 15.0% |
!! | AATAACCAATGTTAATTTCA+TGG | + | chr1.1:57093950-57093969 | None:intergenic | 20.0% |
!! | AATAAGAAGATAGAAAAGAA+AGG | - | chr1.1:57092550-57092569 | MS.gene062256:intron | 20.0% |
!! | AATATTACAAATACAAGCAT+AGG | + | chr1.1:57093308-57093327 | None:intergenic | 20.0% |
!! | AATTTACTAAACAAGCATTA+TGG | - | chr1.1:57092687-57092706 | MS.gene062256:intron | 20.0% |
!! | ATAAACTATATCAAATAGCT+AGG | + | chr1.1:57093444-57093463 | None:intergenic | 20.0% |
!! | ATATATTATAGGTAACTATG+GGG | - | chr1.1:57093658-57093677 | MS.gene062256:CDS | 20.0% |
!! | ATATGAAAAAACGATATAAG+GGG | + | chr1.1:57092644-57092663 | None:intergenic | 20.0% |
!! | ATATTTGTACAATTGTTCTA+TGG | - | chr1.1:57092446-57092465 | MS.gene062256:intron | 20.0% |
!! | ATTGAATTGAAAATCTTAGA+TGG | - | chr1.1:57094272-57094291 | MS.gene062256:intron | 20.0% |
!! | CAATATGAAAAAACGATATA+AGG | + | chr1.1:57092646-57092665 | None:intergenic | 20.0% |
!! | TATACTATTTGTATATGAGT+TGG | - | chr1.1:57092614-57092633 | MS.gene062256:intron | 20.0% |
!!! | AATATTTTGTACTTAACTCA+TGG | - | chr1.1:57094078-57094097 | MS.gene062256:intron | 20.0% |
!!! | GTACATATATATGTTTTTTG+GGG | + | chr1.1:57093894-57093913 | None:intergenic | 20.0% |
!!! | TTGTTTAGTAAATGTTGTTT+TGG | + | chr1.1:57092402-57092421 | None:intergenic | 20.0% |
!!! | TTTATTTTTTGTTGGTCTTA+AGG | + | chr1.1:57094250-57094269 | None:intergenic | 20.0% |
!!! | TTTCTTTTCTATCTTCTTAT+TGG | + | chr1.1:57092551-57092570 | None:intergenic | 20.0% |
!!! | TTTTTTTCTATCTTCCATTT+GGG | + | chr1.1:57092722-57092741 | None:intergenic | 20.0% |
!!! | TTTTTTTTCTATCTTCCATT+TGG | + | chr1.1:57092723-57092742 | None:intergenic | 20.0% |
! | ATCAAAATTACAAGCATTTG+TGG | + | chr1.1:57092829-57092848 | None:intergenic | 25.0% |
! | GGCTATTTATTCTAACTTAT+TGG | - | chr1.1:57094610-57094629 | MS.gene062256:CDS | 25.0% |
! | TAGTACTAATTAATTACCAG+TGG | + | chr1.1:57093273-57093292 | None:intergenic | 25.0% |
! | TCAAAATTACAAGCATTTGT+GGG | + | chr1.1:57092828-57092847 | None:intergenic | 25.0% |
!!! | ATTTTTTGAAGGATGTTTGT+TGG | - | chr1.1:57093973-57093992 | MS.gene062256:intron | 25.0% |
!!! | CTTTTTTTTTGTTGTGATGA+TGG | + | chr1.1:57093482-57093501 | None:intergenic | 25.0% |
!!! | TATAAGGTTTTAGATCTTGA+AGG | - | chr1.1:57093520-57093539 | MS.gene062256:CDS | 25.0% |
!!! | TTATGCAATTTTTTAAGCCT+TGG | - | chr1.1:57092957-57092976 | MS.gene062256:CDS | 25.0% |
AAGCATGCAAGTACTTTAAT+TGG | + | chr1.1:57092314-57092333 | None:intergenic | 30.0% | |
ACAAAAGGTTAACAATACTG+AGG | - | chr1.1:57093097-57093116 | MS.gene062256:intron | 30.0% | |
AGCATGCAAGTACTTTAATT+GGG | + | chr1.1:57092313-57092332 | None:intergenic | 30.0% | |
CACATCCATGAAATTAACAT+TGG | - | chr1.1:57093942-57093961 | MS.gene062256:intron | 30.0% | |
CTATATCAAATAGCTAGGTA+TGG | + | chr1.1:57093439-57093458 | None:intergenic | 30.0% | |
TAATTAATTACCAGTGGTGA+AGG | + | chr1.1:57093267-57093286 | None:intergenic | 30.0% | |
TTCATGGATGTGTAAATATG+TGG | + | chr1.1:57093934-57093953 | None:intergenic | 30.0% | |
! | CAATTATTCTTTTCTCTCCA+AGG | + | chr1.1:57092977-57092996 | None:intergenic | 30.0% |
! | TAATCTTTCAGCATTTTGTC+TGG | + | chr1.1:57093363-57093382 | None:intergenic | 30.0% |
! | TGGTCTTAAGGATTAAGTTT+AGG | + | chr1.1:57094238-57094257 | None:intergenic | 30.0% |
AATAGCTAGGTATGGACTTT+AGG | + | chr1.1:57093431-57093450 | None:intergenic | 35.0% | |
AGAGAGAGAAAAAAGAAGAG+AGG | + | chr1.1:57092516-57092535 | None:intergenic | 35.0% | |
ATGAAAGGATCAGAAGCTAT+TGG | - | chr1.1:57094018-57094037 | MS.gene062256:intron | 35.0% | |
ATTGGGAAAACTTACTTAGC+TGG | + | chr1.1:57092296-57092315 | None:intergenic | 35.0% | |
CATGAAGTCTATCATTCCTT+GGG | + | chr1.1:57093684-57093703 | None:intergenic | 35.0% | |
GAAGCTTAATCTTCAAACCA+AGG | - | chr1.1:57092208-57092227 | MS.gene062256:intron | 35.0% | |
GGCATCAGATAAATCTTTGT+AGG | + | chr1.1:57093225-57093244 | None:intergenic | 35.0% | |
TAGTATATAGTAGCTGGAGA+TGG | + | chr1.1:57093834-57093853 | None:intergenic | 35.0% | |
TATGGATTCTCAAACCCAAA+TGG | - | chr1.1:57092705-57092724 | MS.gene062256:intron | 35.0% | |
TCATGAAGTCTATCATTCCT+TGG | + | chr1.1:57093685-57093704 | None:intergenic | 35.0% | |
TGAAAGGATCAGAAGCTATT+GGG | - | chr1.1:57094019-57094038 | MS.gene062256:intron | 35.0% | |
TGACTGTAGTATATAGTAGC+TGG | + | chr1.1:57093840-57093859 | None:intergenic | 35.0% | |
TGCATCAAGTATAATGCAAG+TGG | + | chr1.1:57094186-57094205 | None:intergenic | 35.0% | |
TGGATGTGTAAATATGTGGT+TGG | + | chr1.1:57093930-57093949 | None:intergenic | 35.0% | |
TTTAGATCTTGAAGGATGCA+TGG | - | chr1.1:57093528-57093547 | MS.gene062256:CDS | 35.0% | |
TTTGTTAAGGTTTCCATGGA+TGG | - | chr1.1:57093158-57093177 | MS.gene062256:intron | 35.0% | |
! | TGCATTTGTTAAGGTTTCCA+TGG | - | chr1.1:57093154-57093173 | MS.gene062256:intron | 35.0% |
! | TTAACTCATGGAAGTATGCT+TGG | - | chr1.1:57094090-57094109 | MS.gene062256:intron | 35.0% |
!! | AGCATTTTGTCTGGTTTAGA+TGG | + | chr1.1:57093354-57093373 | None:intergenic | 35.0% |
!! | CATTTTGTCTGGTTTAGATG+GGG | + | chr1.1:57093352-57093371 | None:intergenic | 35.0% |
!! | GCATTTTGTCTGGTTTAGAT+GGG | + | chr1.1:57093353-57093372 | None:intergenic | 35.0% |
AAGTCAACCTTACGAAGGTA+AGG | + | chr1.1:57093188-57093207 | None:intergenic | 40.0% | |
ACAAAATGACACGCACACAA+GGG | + | chr1.1:57094590-57094609 | None:intergenic | 40.0% | |
CCAACCTATGAAGATAAGGA+TGG | - | chr1.1:57093749-57093768 | MS.gene062256:intron | 40.0% | |
CCATCCTTATCTTCATAGGT+TGG | + | chr1.1:57093752-57093771 | None:intergenic | 40.0% | |
CTATAGGAACTTACTCCCAT+GGG | + | chr1.1:57093799-57093818 | None:intergenic | 40.0% | |
CTTCTCATTCAGATCTTCCT+TGG | + | chr1.1:57092228-57092247 | None:intergenic | 40.0% | |
GAAGAACATGATGGCACAAA+AGG | - | chr1.1:57093082-57093101 | MS.gene062256:intron | 40.0% | |
GTCATACAGGAAGAACATGA+TGG | - | chr1.1:57093073-57093092 | MS.gene062256:intron | 40.0% | |
TATATAGTAGCTGGAGATGG+AGG | + | chr1.1:57093831-57093850 | None:intergenic | 40.0% | |
TATTTCAGGGCTCAAGTAGT+TGG | - | chr1.1:57093035-57093054 | MS.gene062256:CDS | 40.0% | |
TGTGCCAACCTATGAAGATA+AGG | - | chr1.1:57093745-57093764 | MS.gene062256:intron | 40.0% | |
TTGCATTTCTCCATTGCTCT+TGG | + | chr1.1:57094663-57094682 | None:intergenic | 40.0% | |
TTGTCAAGTCAACCTTACGA+AGG | + | chr1.1:57093193-57093212 | None:intergenic | 40.0% | |
! | CATGAATGAGAGCAAGTTGA+TGG | - | chr1.1:57093700-57093719 | MS.gene062256:intron | 40.0% |
! | TACTGCTGCTGCATTTGTTA+AGG | - | chr1.1:57093145-57093164 | MS.gene062256:intron | 40.0% |
!! | GAATGAGAAGAGTGCTTCAA+AGG | - | chr1.1:57092238-57092257 | MS.gene062256:intron | 40.0% |
AAAATGACACGCACACAAGG+GGG | + | chr1.1:57094588-57094607 | None:intergenic | 45.0% | |
AAAGGAGAAGACCCTCCTTA+AGG | - | chr1.1:57092256-57092275 | MS.gene062256:intron | 45.0% | |
AAGCGTCTGCGCATAATGAA+AGG | - | chr1.1:57094003-57094022 | MS.gene062256:intron | 45.0% | |
ATGAAGATAAGGATGGCGAC+TGG | - | chr1.1:57093756-57093775 | MS.gene062256:intron | 45.0% | |
ATGGAGGTTGGATGAGCTAT+AGG | + | chr1.1:57093815-57093834 | None:intergenic | 45.0% | |
CAAAATGACACGCACACAAG+GGG | + | chr1.1:57094589-57094608 | None:intergenic | 45.0% | |
CACAAAATGACACGCACACA+AGG | + | chr1.1:57094591-57094610 | None:intergenic | 45.0% | |
CATTTCAGCACCAAGAGCAA+TGG | - | chr1.1:57094650-57094669 | MS.gene062256:CDS | 45.0% | |
GCTATAGGAACTTACTCCCA+TGG | + | chr1.1:57093800-57093819 | None:intergenic | 45.0% | |
GGGAAAACTTACTTAGCTGG+TGG | + | chr1.1:57092293-57092312 | None:intergenic | 45.0% | |
GTCGCCATCCTTATCTTCAT+AGG | + | chr1.1:57093756-57093775 | None:intergenic | 45.0% | |
TTCTTCCTGTATGACCTCAC+TGG | + | chr1.1:57093068-57093087 | None:intergenic | 45.0% | |
! | AAGGAGACTGAGCTTTGTCT+TGG | - | chr1.1:57092089-57092108 | MS.gene062256:intron | 45.0% |
! | GGTGAAGGAGCTGAACATTT+TGG | + | chr1.1:57093252-57093271 | None:intergenic | 45.0% |
!! | TTCTGAGGTGGAAACTCCAA+GGG | - | chr1.1:57092148-57092167 | MS.gene062256:intron | 45.0% |
!!! | CTTGTGTGCGTGTCATTTTG+TGG | - | chr1.1:57094589-57094608 | MS.gene062256:CDS | 45.0% |
!!! | GGAGCTGAACATTTTGGCTA+AGG | + | chr1.1:57093246-57093265 | None:intergenic | 45.0% |
!! | ATTATATTAATAATATTTCA+GGG | - | chr1.1:57093022-57093041 | MS.gene062256:CDS | 5.0% |
!! | ATTTGTAATATTTATATATA+TGG | - | chr1.1:57093316-57093335 | MS.gene062256:intron | 5.0% |
!! | TATTATATTAATAATATTTC+AGG | - | chr1.1:57093021-57093040 | MS.gene062256:CDS | 5.0% |
AAATGACACGCACACAAGGG+GGG | + | chr1.1:57094587-57094606 | None:intergenic | 50.0% | |
ACTTAGCTGGTGGCTTAGCA+GGG | + | chr1.1:57092283-57092302 | None:intergenic | 50.0% | |
AGGATGCATGGCGATTGTTG+AGG | - | chr1.1:57093540-57093559 | MS.gene062256:CDS | 50.0% | |
ATAGGTAACTATGGGGCCCA+AGG | - | chr1.1:57093665-57093684 | MS.gene062256:CDS | 50.0% | |
ATGTTCAGCTCCTTCACCAC+TGG | - | chr1.1:57093254-57093273 | MS.gene062256:intron | 50.0% | |
CTTAGCAGGGTCCTTAAGGA+GGG | + | chr1.1:57092270-57092289 | None:intergenic | 50.0% | |
GACAAAGCTCAGTCTCCTTC+AGG | + | chr1.1:57092088-57092107 | None:intergenic | 50.0% | |
GGATCAGAAGCTATTGGGCT+TGG | - | chr1.1:57094024-57094043 | MS.gene062256:intron | 50.0% | |
GTTCAATCCATGCCCCATAG+TGG | + | chr1.1:57092066-57092085 | None:intergenic | 50.0% | |
TACTTAGCTGGTGGCTTAGC+AGG | + | chr1.1:57092284-57092303 | None:intergenic | 50.0% | |
TAGTAGCTGGAGATGGAGGT+TGG | + | chr1.1:57093827-57093846 | None:intergenic | 50.0% | |
TCAGGGCTCAAGTAGTTGGT+TGG | - | chr1.1:57093039-57093058 | MS.gene062256:CDS | 50.0% | |
TTCCTGTATGACCTCACTGG+TGG | + | chr1.1:57093065-57093084 | None:intergenic | 50.0% | |
! | AAGGTAAGGTGCTCCATCCA+TGG | + | chr1.1:57093174-57093193 | None:intergenic | 50.0% |
! | TGGAGCACCTTACCTTCGTA+AGG | - | chr1.1:57093178-57093197 | MS.gene062256:intron | 50.0% |
!! | GTTCTGAGGTGGAAACTCCA+AGG | - | chr1.1:57092147-57092166 | MS.gene062256:intron | 50.0% |
CTTTGTCTTGGTCTGCCTGG+TGG | - | chr1.1:57092101-57092120 | MS.gene062256:intron | 55.0% | |
GCTTAGCAGGGTCCTTAAGG+AGG | + | chr1.1:57092271-57092290 | None:intergenic | 55.0% | |
GTGGCTTAGCAGGGTCCTTA+AGG | + | chr1.1:57092274-57092293 | None:intergenic | 55.0% | |
! | GAGCTTTGTCTTGGTCTGCC+TGG | - | chr1.1:57092098-57092117 | MS.gene062256:intron | 55.0% |
! | GGGGCATGGATTGAACCTGA+AGG | - | chr1.1:57092070-57092089 | MS.gene062256:CDS | 55.0% |
! | TAGTTGGTTGGCCACCAGTG+AGG | - | chr1.1:57093051-57093070 | MS.gene062256:CDS | 55.0% |
CCAAGGGCTTCTGCGAAGAG+AGG | - | chr1.1:57092164-57092183 | MS.gene062256:intron | 60.0% | |
CCTCTCTTCGCAGAAGCCCT+TGG | + | chr1.1:57092167-57092186 | None:intergenic | 60.0% | |
GATGGCGACTGGATGCTCGT+GGG | - | chr1.1:57093767-57093786 | MS.gene062256:intron | 60.0% | |
GCACACAAGGGGGGACTCAA+GGG | + | chr1.1:57094578-57094597 | None:intergenic | 60.0% | |
GCTCGTGGGAGATGTCCCAT+GGG | - | chr1.1:57093781-57093800 | MS.gene062256:intron | 60.0% | |
GGCCACCAGTGAGGTCATAC+AGG | - | chr1.1:57093060-57093079 | MS.gene062256:CDS | 60.0% | |
TGCTCGTGGGAGATGTCCCA+TGG | - | chr1.1:57093780-57093799 | MS.gene062256:intron | 60.0% | |
TGTCTTGGTCTGCCTGGTGG+TGG | - | chr1.1:57092104-57092123 | MS.gene062256:intron | 60.0% | |
CGCACACAAGGGGGGACTCA+AGG | + | chr1.1:57094579-57094598 | None:intergenic | 65.0% | |
GGATGGCGACTGGATGCTCG+TGG | - | chr1.1:57093766-57093785 | MS.gene062256:intron | 65.0% | |
!! | CGGTGGAGGTGGTTCTGAGG+TGG | - | chr1.1:57092136-57092155 | MS.gene062256:intron | 65.0% |
!! | CTTGGTCTGCCTGGTGGTGG+TGG | - | chr1.1:57092107-57092126 | MS.gene062256:intron | 65.0% |
! | CGGCGGTGGAGGTGGTTCTG+AGG | - | chr1.1:57092133-57092152 | MS.gene062256:intron | 70.0% |
!! | GGTCTGCCTGGTGGTGGTGG+CGG | - | chr1.1:57092110-57092129 | MS.gene062256:intron | 70.0% |
!! | CTGCCTGGTGGTGGTGGCGG+CGG | - | chr1.1:57092113-57092132 | MS.gene062256:intron | 75.0% |
!!! | CCTGGTGGTGGTGGCGGCGG+CGG | - | chr1.1:57092116-57092135 | MS.gene062256:intron | 80.0% |
! | CCGCCGCCGCCACCACCACC+AGG | + | chr1.1:57092119-57092138 | None:intergenic | 85.0% |
!! | GGTGGCGGCGGCGGTGGAGG+TGG | - | chr1.1:57092125-57092144 | MS.gene062256:intron | 85.0% |
!!! | GGTGGTGGCGGCGGCGGTGG+AGG | - | chr1.1:57092122-57092141 | MS.gene062256:intron | 85.0% |
!!! | GGTGGTGGTGGCGGCGGCGG+TGG | - | chr1.1:57092119-57092138 | MS.gene062256:intron | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 57092059 | 57094695 | 57092059 | ID=MS.gene062256 |
chr1.1 | mRNA | 57092059 | 57094695 | 57092059 | ID=MS.gene062256.t1;Parent=MS.gene062256 |
chr1.1 | exon | 57094454 | 57094695 | 57094454 | ID=MS.gene062256.t1.exon1;Parent=MS.gene062256.t1 |
chr1.1 | CDS | 57094454 | 57094695 | 57094454 | ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1 |
chr1.1 | exon | 57093479 | 57093711 | 57093479 | ID=MS.gene062256.t1.exon2;Parent=MS.gene062256.t1 |
chr1.1 | CDS | 57093479 | 57093711 | 57093479 | ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1 |
chr1.1 | exon | 57092950 | 57093085 | 57092950 | ID=MS.gene062256.t1.exon3;Parent=MS.gene062256.t1 |
chr1.1 | CDS | 57092950 | 57093085 | 57092950 | ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1 |
chr1.1 | exon | 57092709 | 57092770 | 57092709 | ID=MS.gene062256.t1.exon4;Parent=MS.gene062256.t1 |
chr1.1 | CDS | 57092709 | 57092770 | 57092709 | ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1 |
chr1.1 | exon | 57092059 | 57092096 | 57092059 | ID=MS.gene062256.t1.exon5;Parent=MS.gene062256.t1 |
chr1.1 | CDS | 57092059 | 57092096 | 57092059 | ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1 |
Gene Sequence |
Protein sequence |