AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062256


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062256.t1 MTR_1g093240 99.576 236 1 0 1 236 1 236 2.42e-176 484
MS.gene062256.t1 MTR_1g093240 99.554 224 1 0 1 224 1 224 5.12e-166 457
MS.gene062256.t1 MTR_1g093240 99.510 204 1 0 1 204 1 204 2.54e-150 417
MS.gene062256.t1 MTR_1g070520 68.619 239 51 7 12 236 17 245 2.28e-102 297
MS.gene062256.t1 MTR_7g096090 63.710 248 67 5 6 236 9 250 7.87e-98 286
MS.gene062256.t1 MTR_1g080860 63.115 244 70 6 8 236 15 253 1.96e-96 282
MS.gene062256.t1 MTR_1g080860 61.638 232 69 6 8 224 15 241 5.40e-87 258
MS.gene062256.t1 MTR_6g488150 50.973 257 85 6 6 236 13 254 8.32e-79 238
MS.gene062256.t1 MTR_8g103030 48.364 275 93 8 7 236 23 293 6.80e-71 219
MS.gene062256.t1 MTR_5g030710 48.252 286 90 7 8 236 51 335 1.53e-70 219
MS.gene062256.t1 MTR_8g067530 44.755 286 101 5 6 236 73 356 1.08e-67 213
MS.gene062256.t1 MTR_2g101500 43.894 303 95 8 8 236 25 326 2.53e-66 208
MS.gene062256.t1 MTR_5g067350 62.893 159 57 2 78 236 191 347 3.27e-66 208
MS.gene062256.t1 MTR_1g070830 46.429 224 79 6 8 224 12 201 1.05e-53 172
MS.gene062256.t1 MTR_1g076270 46.083 217 68 6 8 224 11 178 5.73e-52 166
MS.gene062256.t1 MTR_1g093350 46.083 217 68 6 8 224 11 178 5.73e-52 166
MS.gene062256.t1 MTR_1g040675 42.986 221 83 6 8 224 1 182 2.33e-49 160
MS.gene062256.t1 MTR_4g011880 41.304 230 75 7 1 228 1 172 2.05e-38 132
MS.gene062256.t1 MTR_1g069495 42.623 183 72 3 82 231 81 263 1.69e-37 132
MS.gene062256.t1 MTR_1g040675 39.303 201 79 6 8 204 1 162 5.16e-37 127
MS.gene062256.t1 MTR_2g102490 39.437 213 81 7 10 219 16 183 6.59e-37 129
MS.gene062256.t1 MTR_6g488150 40.331 181 69 5 5 161 12 177 2.49e-33 119
MS.gene062256.t1 MTR_8g014520 37.714 175 89 3 64 220 88 260 3.54e-29 110
MS.gene062256.t1 MTR_8g014520 37.714 175 89 3 64 220 88 260 3.65e-29 110
MS.gene062256.t1 MTR_2g100780 38.824 170 73 5 77 220 90 254 4.65e-28 107
MS.gene062256.t1 MTR_2g100780 38.824 170 73 5 77 220 90 254 7.79e-28 107
MS.gene062256.t1 MTR_5g067350 58.537 82 33 1 78 159 191 271 3.02e-25 100
MS.gene062256.t1 MTR_4g124300 32.867 143 67 4 81 221 69 184 3.12e-19 82.4
MS.gene062256.t1 MTR_1g085750 41.509 106 48 3 113 217 78 170 5.92e-17 76.3
MS.gene062256.t1 MTR_3g106850 26.950 141 83 3 83 221 88 210 6.71e-17 77.0
MS.gene062256.t1 MTR_4g115075 26.667 135 78 1 84 218 93 206 4.42e-15 71.6
MS.gene062256.t1 MTR_7g110790 39.604 101 47 4 118 217 68 155 2.53e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062256.t1 AT4G14550 75.000 236 44 4 8 236 1 228 9.70e-121 343
MS.gene062256.t1 AT3G23050 70.683 249 50 6 4 236 2 243 1.94e-117 335
MS.gene062256.t1 AT4G14550 74.107 224 43 4 8 224 1 216 1.62e-112 322
MS.gene062256.t1 AT1G04250 65.272 239 57 5 8 236 7 229 1.93e-103 299
MS.gene062256.t1 AT3G04730 64.050 242 67 4 8 236 2 236 1.16e-102 297
MS.gene062256.t1 AT4G14550 72.414 203 41 4 8 203 1 195 7.16e-98 284
MS.gene062256.t1 AT3G23050 67.593 216 48 5 4 204 2 210 8.95e-95 276
MS.gene062256.t1 AT4G29080 48.699 269 99 8 6 235 36 304 3.49e-71 220
MS.gene062256.t1 AT5G65670 44.964 278 102 6 8 236 61 336 1.50e-66 209
MS.gene062256.t1 AT5G65670 44.643 280 102 7 8 236 61 338 1.41e-64 204
MS.gene062256.t1 AT2G22670 52.804 214 80 5 41 235 107 318 3.50e-63 200
MS.gene062256.t1 AT2G22670 52.804 214 80 5 41 235 107 318 3.50e-63 200
MS.gene062256.t1 AT2G22670 52.804 214 80 5 41 235 124 335 5.32e-63 200
MS.gene062256.t1 AT4G14550 66.667 159 38 4 8 159 1 151 1.81e-62 193
MS.gene062256.t1 AT2G22670 51.869 214 80 6 41 235 107 316 6.32e-60 191
MS.gene062256.t1 AT2G22670 51.869 214 80 6 41 235 107 316 6.32e-60 191
MS.gene062256.t1 AT3G23050 60.694 173 46 5 4 161 2 167 1.83e-59 185
MS.gene062256.t1 AT1G04240 47.511 221 80 7 4 224 1 185 7.30e-55 174
MS.gene062256.t1 AT1G04240 46.875 224 83 7 1 224 98 285 4.97e-54 175
MS.gene062256.t1 AT5G43700 48.165 218 67 7 8 225 11 182 1.59e-52 168
MS.gene062256.t1 AT3G23030 45.161 217 64 6 8 224 9 170 3.51e-49 159
MS.gene062256.t1 AT3G23030 45.161 217 64 6 8 224 96 257 2.26e-48 160
MS.gene062256.t1 AT4G14560 43.056 216 67 5 6 221 5 164 6.97e-44 145
MS.gene062256.t1 AT1G15580 40.639 219 70 4 1 219 1 159 2.45e-43 144
MS.gene062256.t1 AT3G15540 40.086 232 95 7 6 231 4 197 7.25e-41 139
MS.gene062256.t1 AT2G33310 44.828 174 72 6 76 230 68 236 4.82e-39 135
MS.gene062256.t1 AT2G33310 44.828 174 72 6 76 230 68 236 4.82e-39 135
MS.gene062256.t1 AT2G33310 44.767 172 71 6 78 230 71 237 6.69e-38 132
MS.gene062256.t1 AT1G52830 38.813 219 96 6 6 224 4 184 8.81e-38 130
MS.gene062256.t1 AT4G28640 48.408 157 65 5 83 225 88 242 1.68e-35 126
MS.gene062256.t1 AT1G04550 41.477 176 76 3 76 231 62 230 2.35e-35 126
MS.gene062256.t1 AT4G28640 48.387 155 64 5 83 223 88 240 2.87e-35 126
MS.gene062256.t1 AT3G16500 38.095 231 108 8 11 220 36 252 4.74e-34 123
MS.gene062256.t1 AT4G28640 48.387 155 64 5 83 223 88 240 5.20e-34 124
MS.gene062256.t1 AT3G16500 38.095 231 108 8 11 220 36 252 7.28e-34 122
MS.gene062256.t1 AT5G25890 39.157 166 77 3 62 227 29 170 2.66e-30 111
MS.gene062256.t1 AT1G04100 40.719 167 70 4 85 224 95 259 7.52e-30 112
MS.gene062256.t1 AT1G51950 40.625 160 74 4 80 220 93 250 2.22e-28 108
MS.gene062256.t1 AT3G17600 32.877 146 68 4 75 217 36 154 2.19e-21 87.4
MS.gene062256.t1 AT2G46990 39.623 106 51 2 114 219 80 172 7.85e-19 81.3
MS.gene062256.t1 AT3G62100 38.889 108 53 2 110 217 74 168 1.62e-18 80.1
MS.gene062256.t1 AT2G46990 40.659 91 41 2 114 204 80 157 3.91e-14 68.2
MS.gene062256.t1 AT4G32280 23.944 213 105 6 50 232 64 249 1.04e-13 68.9
MS.gene062256.t1 AT1G80390 34.000 150 61 3 9 158 15 126 1.57e-13 65.9
MS.gene062256.t1 AT3G62100 37.895 95 46 2 110 204 74 155 2.06e-13 66.2
MS.gene062256.t1 AT4G32280 29.204 113 56 2 120 232 119 207 1.46e-12 65.1

Find 79 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAGGAGCTGAACATTT+TGG 0.275554 1.1:+57093483 None:intergenic
GGTGGTGGTGGCGGCGGCGG+TGG 0.280712 1.1:-57094613 MS.gene062256:CDS
ATATATATTATAGGTAACTA+TGG 0.289007 1.1:-57093076 MS.gene062256:intron
CTTCTCATTCAGATCTTCCT+TGG 0.341646 1.1:+57094507 None:intergenic
GGTGGTGGCGGCGGCGGTGG+AGG 0.343665 1.1:-57094610 MS.gene062256:CDS
TACTTAGCTGGTGGCTTAGC+AGG 0.347183 1.1:+57094451 None:intergenic
GGTGGCGGCGGCGGTGGAGG+TGG 0.350359 1.1:-57094607 MS.gene062256:CDS
TTGCATTTCTCCATTGCTCT+TGG 0.358710 1.1:+57092072 None:intergenic
GACAAAGCTCAGTCTCCTTC+AGG 0.370771 1.1:+57094647 None:intergenic
ATGAAAGGATCAGAAGCTAT+TGG 0.371063 1.1:-57092714 MS.gene062256:CDS
CCTGGTGGTGGTGGCGGCGG+CGG 0.379613 1.1:-57094616 MS.gene062256:CDS
GGCATCAGATAAATCTTTGT+AGG 0.380510 1.1:+57093510 None:intergenic
GTGGCTTAGCAGGGTCCTTA+AGG 0.389548 1.1:+57094461 None:intergenic
TACTGCTGCTGCATTTGTTA+AGG 0.392669 1.1:-57093587 MS.gene062256:CDS
CATGAATGAGAGCAAGTTGA+TGG 0.395903 1.1:-57093032 MS.gene062256:CDS
CTGCCTGGTGGTGGTGGCGG+CGG 0.419116 1.1:-57094619 MS.gene062256:CDS
TGAAAGGATCAGAAGCTATT+GGG 0.427068 1.1:-57092713 MS.gene062256:CDS
ATTGGGAAAACTTACTTAGC+TGG 0.432635 1.1:+57094439 None:intergenic
TCATGAAGTCTATCATTCCT+TGG 0.436607 1.1:+57093050 None:intergenic
GAGCTTTGTCTTGGTCTGCC+TGG 0.443783 1.1:-57094634 MS.gene062256:CDS
TTTGTTAAGGTTTCCATGGA+TGG 0.449811 1.1:-57093574 MS.gene062256:CDS
AAGGAGACTGAGCTTTGTCT+TGG 0.456647 1.1:-57094643 MS.gene062256:CDS
GGATCAGAAGCTATTGGGCT+TGG 0.459856 1.1:-57092708 MS.gene062256:intron
CTTGGTCTGCCTGGTGGTGG+TGG 0.460328 1.1:-57094625 MS.gene062256:CDS
CATGAAGTCTATCATTCCTT+GGG 0.461454 1.1:+57093051 None:intergenic
TATTTCAGGGCTCAAGTAGT+TGG 0.461914 1.1:-57093697 MS.gene062256:intron
TGTCTTGGTCTGCCTGGTGG+TGG 0.462328 1.1:-57094628 MS.gene062256:CDS
TATATATTATAGGTAACTAT+GGG 0.462994 1.1:-57093075 MS.gene062256:intron
AAAGGAGAAGACCCTCCTTA+AGG 0.463373 1.1:-57094476 MS.gene062256:CDS
GTCGCCATCCTTATCTTCAT+AGG 0.465608 1.1:+57092979 None:intergenic
GAAGAACATGATGGCACAAA+AGG 0.465863 1.1:-57093650 MS.gene062256:CDS
CCTCTCTTCGCAGAAGCCCT+TGG 0.474958 1.1:+57094568 None:intergenic
ATTTAGACCAAAATCAGCTT+CGG 0.485181 1.1:+57092046 None:intergenic
GCTTAGCAGGGTCCTTAAGG+AGG 0.489152 1.1:+57094464 None:intergenic
GGCCACCAGTGAGGTCATAC+AGG 0.498221 1.1:-57093672 MS.gene062256:CDS
GGTCTGCCTGGTGGTGGTGG+CGG 0.503771 1.1:-57094622 MS.gene062256:CDS
CCATCCTTATCTTCATAGGT+TGG 0.508321 1.1:+57092983 None:intergenic
CGGTGGAGGTGGTTCTGAGG+TGG 0.509616 1.1:-57094596 MS.gene062256:CDS
GAATGAGAAGAGTGCTTCAA+AGG 0.512968 1.1:-57094494 MS.gene062256:CDS
TGCATTTGTTAAGGTTTCCA+TGG 0.525650 1.1:-57093578 MS.gene062256:CDS
CCGCCGCCGCCACCACCACC+AGG 0.530029 1.1:+57094616 None:intergenic
TGTGCCAACCTATGAAGATA+AGG 0.537235 1.1:-57092987 MS.gene062256:CDS
TCAGGGCTCAAGTAGTTGGT+TGG 0.538535 1.1:-57093693 MS.gene062256:intron
ACTTAGCTGGTGGCTTAGCA+GGG 0.540758 1.1:+57094452 None:intergenic
TTCTTCCTGTATGACCTCAC+TGG 0.545123 1.1:+57093667 None:intergenic
AAGGTAAGGTGCTCCATCCA+TGG 0.548189 1.1:+57093561 None:intergenic
AAGTCAACCTTACGAAGGTA+AGG 0.557851 1.1:+57093547 None:intergenic
TGCTCGTGGGAGATGTCCCA+TGG 0.560169 1.1:-57092952 MS.gene062256:CDS
GTTCTGAGGTGGAAACTCCA+AGG 0.563503 1.1:-57094585 MS.gene062256:CDS
TGGAGCACCTTACCTTCGTA+AGG 0.564503 1.1:-57093554 MS.gene062256:CDS
CCAAGGGCTTCTGCGAAGAG+AGG 0.567370 1.1:-57094568 MS.gene062256:CDS
CATTTCAGCACCAAGAGCAA+TGG 0.570918 1.1:-57092082 MS.gene062256:intron
ATGTTCAGCTCCTTCACCAC+TGG 0.578252 1.1:-57093478 MS.gene062256:intron
TAATTAATTACCAGTGGTGA+AGG 0.579528 1.1:+57093468 None:intergenic
AATATGGCCACTATGGGGCA+TGG 0.587296 1.1:-57094676 MS.gene062256:CDS
CTTAGCAGGGTCCTTAAGGA+GGG 0.587502 1.1:+57094465 None:intergenic
GTTCAATCCATGCCCCATAG+TGG 0.588585 1.1:+57094669 None:intergenic
AAGCGTCTGCGCATAATGAA+AGG 0.596352 1.1:-57092729 MS.gene062256:CDS
GGATGGCGACTGGATGCTCG+TGG 0.596688 1.1:-57092966 MS.gene062256:CDS
ATGAAGATAAGGATGGCGAC+TGG 0.598557 1.1:-57092976 MS.gene062256:CDS
GCTATAGGAACTTACTCCCA+TGG 0.598945 1.1:+57092935 None:intergenic
TTCTGAGGTGGAAACTCCAA+GGG 0.603496 1.1:-57094584 MS.gene062256:CDS
GGGAAAACTTACTTAGCTGG+TGG 0.604797 1.1:+57094442 None:intergenic
CGGCGGTGGAGGTGGTTCTG+AGG 0.606000 1.1:-57094599 MS.gene062256:CDS
TTCCTGTATGACCTCACTGG+TGG 0.606534 1.1:+57093670 None:intergenic
ATAGGTAACTATGGGGCCCA+AGG 0.608548 1.1:-57093067 MS.gene062256:intron
GAAGCTTAATCTTCAAACCA+AGG 0.609730 1.1:-57094524 MS.gene062256:CDS
CTTTGTCTTGGTCTGCCTGG+TGG 0.610253 1.1:-57094631 MS.gene062256:CDS
CTATAGGAACTTACTCCCAT+GGG 0.622755 1.1:+57092936 None:intergenic
GGGGCATGGATTGAACCTGA+AGG 0.627746 1.1:-57094662 MS.gene062256:CDS
CCAACCTATGAAGATAAGGA+TGG 0.646142 1.1:-57092983 MS.gene062256:CDS
GCTCGTGGGAGATGTCCCAT+GGG 0.650152 1.1:-57092951 MS.gene062256:CDS
GTCATACAGGAAGAACATGA+TGG 0.666998 1.1:-57093659 MS.gene062256:CDS
GATGGCGACTGGATGCTCGT+GGG 0.667120 1.1:-57092965 MS.gene062256:CDS
AAAAGAATATGGCCACTATG+GGG 0.689548 1.1:-57094681 None:intergenic
TAGTTGGTTGGCCACCAGTG+AGG 0.691007 1.1:-57093681 MS.gene062256:CDS
ACAAAAGGTTAACAATACTG+AGG 0.707970 1.1:-57093635 MS.gene062256:CDS
TTGTCAAGTCAACCTTACGA+AGG 0.716471 1.1:+57093542 None:intergenic
ATATATTATAGGTAACTATG+GGG 0.717921 1.1:-57093074 MS.gene062256:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTTATATATATTAT+AGG - chr1.1:57093647-57093666 MS.gene062256:CDS 0.0%
!! TTATTATTAATATTATTATA+AGG - chr1.1:57093504-57093523 MS.gene062256:CDS 0.0%
!! TTAAAAAATTGCATAAAATT+TGG + chr1.1:57092953-57092972 None:intergenic 10.0%
!!! ATTATTAATTTGAAGAAAAA+TGG + chr1.1:57092875-57092894 None:intergenic 10.0%
!!! TTTTTTTTTTATAACTTTCT+TGG - chr1.1:57092345-57092364 MS.gene062256:intron 10.0%
!! AAAAAACATATATATGTACT+TGG - chr1.1:57093895-57093914 MS.gene062256:intron 15.0%
!! AAAGAATAATTGAGATTTAT+AGG - chr1.1:57092985-57093004 MS.gene062256:CDS 15.0%
!! AAATCATATTTACATTATGT+TGG + chr1.1:57094450-57094469 None:intergenic 15.0%
!! AAGAATAATTGAGATTTATA+GGG - chr1.1:57092986-57093005 MS.gene062256:CDS 15.0%
!! AATATGAAAAAACGATATAA+GGG + chr1.1:57092645-57092664 None:intergenic 15.0%
!! AGATTAATTATTATCATCTT+GGG - chr1.1:57093578-57093597 MS.gene062256:CDS 15.0%
!! ATATATATTATAGGTAACTA+TGG - chr1.1:57093656-57093675 MS.gene062256:CDS 15.0%
!! ATGATAATTTAGATATTTGA+AGG + chr1.1:57094400-57094419 None:intergenic 15.0%
!! TAGATTAATTATTATCATCT+TGG - chr1.1:57093577-57093596 MS.gene062256:CDS 15.0%
!! TATATATTATAGGTAACTAT+GGG - chr1.1:57093657-57093676 MS.gene062256:CDS 15.0%
!! TGTAAATATGATTTAATAGT+TGG - chr1.1:57094456-57094475 MS.gene062256:CDS 15.0%
!!! AAGTACATATATATGTTTTT+TGG + chr1.1:57093896-57093915 None:intergenic 15.0%
!!! AGTACATATATATGTTTTTT+GGG + chr1.1:57093895-57093914 None:intergenic 15.0%
!!! TGGTTATTTAAATTTTTTGA+AGG - chr1.1:57093962-57093981 MS.gene062256:intron 15.0%
!!! TTCAATGATTTATTTTTTGT+TGG + chr1.1:57094258-57094277 None:intergenic 15.0%
!! AATAACCAATGTTAATTTCA+TGG + chr1.1:57093950-57093969 None:intergenic 20.0%
!! AATAAGAAGATAGAAAAGAA+AGG - chr1.1:57092550-57092569 MS.gene062256:intron 20.0%
!! AATATTACAAATACAAGCAT+AGG + chr1.1:57093308-57093327 None:intergenic 20.0%
!! AATTTACTAAACAAGCATTA+TGG - chr1.1:57092687-57092706 MS.gene062256:intron 20.0%
!! ATAAACTATATCAAATAGCT+AGG + chr1.1:57093444-57093463 None:intergenic 20.0%
!! ATATATTATAGGTAACTATG+GGG - chr1.1:57093658-57093677 MS.gene062256:CDS 20.0%
!! ATATGAAAAAACGATATAAG+GGG + chr1.1:57092644-57092663 None:intergenic 20.0%
!! ATATTTGTACAATTGTTCTA+TGG - chr1.1:57092446-57092465 MS.gene062256:intron 20.0%
!! ATTGAATTGAAAATCTTAGA+TGG - chr1.1:57094272-57094291 MS.gene062256:intron 20.0%
!! CAATATGAAAAAACGATATA+AGG + chr1.1:57092646-57092665 None:intergenic 20.0%
!! TATACTATTTGTATATGAGT+TGG - chr1.1:57092614-57092633 MS.gene062256:intron 20.0%
!!! AATATTTTGTACTTAACTCA+TGG - chr1.1:57094078-57094097 MS.gene062256:intron 20.0%
!!! GTACATATATATGTTTTTTG+GGG + chr1.1:57093894-57093913 None:intergenic 20.0%
!!! TTGTTTAGTAAATGTTGTTT+TGG + chr1.1:57092402-57092421 None:intergenic 20.0%
!!! TTTATTTTTTGTTGGTCTTA+AGG + chr1.1:57094250-57094269 None:intergenic 20.0%
!!! TTTCTTTTCTATCTTCTTAT+TGG + chr1.1:57092551-57092570 None:intergenic 20.0%
!!! TTTTTTTCTATCTTCCATTT+GGG + chr1.1:57092722-57092741 None:intergenic 20.0%
!!! TTTTTTTTCTATCTTCCATT+TGG + chr1.1:57092723-57092742 None:intergenic 20.0%
! ATCAAAATTACAAGCATTTG+TGG + chr1.1:57092829-57092848 None:intergenic 25.0%
! GGCTATTTATTCTAACTTAT+TGG - chr1.1:57094610-57094629 MS.gene062256:CDS 25.0%
! TAGTACTAATTAATTACCAG+TGG + chr1.1:57093273-57093292 None:intergenic 25.0%
! TCAAAATTACAAGCATTTGT+GGG + chr1.1:57092828-57092847 None:intergenic 25.0%
!!! ATTTTTTGAAGGATGTTTGT+TGG - chr1.1:57093973-57093992 MS.gene062256:intron 25.0%
!!! CTTTTTTTTTGTTGTGATGA+TGG + chr1.1:57093482-57093501 None:intergenic 25.0%
!!! TATAAGGTTTTAGATCTTGA+AGG - chr1.1:57093520-57093539 MS.gene062256:CDS 25.0%
!!! TTATGCAATTTTTTAAGCCT+TGG - chr1.1:57092957-57092976 MS.gene062256:CDS 25.0%
AAGCATGCAAGTACTTTAAT+TGG + chr1.1:57092314-57092333 None:intergenic 30.0%
ACAAAAGGTTAACAATACTG+AGG - chr1.1:57093097-57093116 MS.gene062256:intron 30.0%
AGCATGCAAGTACTTTAATT+GGG + chr1.1:57092313-57092332 None:intergenic 30.0%
CACATCCATGAAATTAACAT+TGG - chr1.1:57093942-57093961 MS.gene062256:intron 30.0%
CTATATCAAATAGCTAGGTA+TGG + chr1.1:57093439-57093458 None:intergenic 30.0%
TAATTAATTACCAGTGGTGA+AGG + chr1.1:57093267-57093286 None:intergenic 30.0%
TTCATGGATGTGTAAATATG+TGG + chr1.1:57093934-57093953 None:intergenic 30.0%
! CAATTATTCTTTTCTCTCCA+AGG + chr1.1:57092977-57092996 None:intergenic 30.0%
! TAATCTTTCAGCATTTTGTC+TGG + chr1.1:57093363-57093382 None:intergenic 30.0%
! TGGTCTTAAGGATTAAGTTT+AGG + chr1.1:57094238-57094257 None:intergenic 30.0%
AATAGCTAGGTATGGACTTT+AGG + chr1.1:57093431-57093450 None:intergenic 35.0%
AGAGAGAGAAAAAAGAAGAG+AGG + chr1.1:57092516-57092535 None:intergenic 35.0%
ATGAAAGGATCAGAAGCTAT+TGG - chr1.1:57094018-57094037 MS.gene062256:intron 35.0%
ATTGGGAAAACTTACTTAGC+TGG + chr1.1:57092296-57092315 None:intergenic 35.0%
CATGAAGTCTATCATTCCTT+GGG + chr1.1:57093684-57093703 None:intergenic 35.0%
GAAGCTTAATCTTCAAACCA+AGG - chr1.1:57092208-57092227 MS.gene062256:intron 35.0%
GGCATCAGATAAATCTTTGT+AGG + chr1.1:57093225-57093244 None:intergenic 35.0%
TAGTATATAGTAGCTGGAGA+TGG + chr1.1:57093834-57093853 None:intergenic 35.0%
TATGGATTCTCAAACCCAAA+TGG - chr1.1:57092705-57092724 MS.gene062256:intron 35.0%
TCATGAAGTCTATCATTCCT+TGG + chr1.1:57093685-57093704 None:intergenic 35.0%
TGAAAGGATCAGAAGCTATT+GGG - chr1.1:57094019-57094038 MS.gene062256:intron 35.0%
TGACTGTAGTATATAGTAGC+TGG + chr1.1:57093840-57093859 None:intergenic 35.0%
TGCATCAAGTATAATGCAAG+TGG + chr1.1:57094186-57094205 None:intergenic 35.0%
TGGATGTGTAAATATGTGGT+TGG + chr1.1:57093930-57093949 None:intergenic 35.0%
TTTAGATCTTGAAGGATGCA+TGG - chr1.1:57093528-57093547 MS.gene062256:CDS 35.0%
TTTGTTAAGGTTTCCATGGA+TGG - chr1.1:57093158-57093177 MS.gene062256:intron 35.0%
! TGCATTTGTTAAGGTTTCCA+TGG - chr1.1:57093154-57093173 MS.gene062256:intron 35.0%
! TTAACTCATGGAAGTATGCT+TGG - chr1.1:57094090-57094109 MS.gene062256:intron 35.0%
!! AGCATTTTGTCTGGTTTAGA+TGG + chr1.1:57093354-57093373 None:intergenic 35.0%
!! CATTTTGTCTGGTTTAGATG+GGG + chr1.1:57093352-57093371 None:intergenic 35.0%
!! GCATTTTGTCTGGTTTAGAT+GGG + chr1.1:57093353-57093372 None:intergenic 35.0%
AAGTCAACCTTACGAAGGTA+AGG + chr1.1:57093188-57093207 None:intergenic 40.0%
ACAAAATGACACGCACACAA+GGG + chr1.1:57094590-57094609 None:intergenic 40.0%
CCAACCTATGAAGATAAGGA+TGG - chr1.1:57093749-57093768 MS.gene062256:intron 40.0%
CCATCCTTATCTTCATAGGT+TGG + chr1.1:57093752-57093771 None:intergenic 40.0%
CTATAGGAACTTACTCCCAT+GGG + chr1.1:57093799-57093818 None:intergenic 40.0%
CTTCTCATTCAGATCTTCCT+TGG + chr1.1:57092228-57092247 None:intergenic 40.0%
GAAGAACATGATGGCACAAA+AGG - chr1.1:57093082-57093101 MS.gene062256:intron 40.0%
GTCATACAGGAAGAACATGA+TGG - chr1.1:57093073-57093092 MS.gene062256:intron 40.0%
TATATAGTAGCTGGAGATGG+AGG + chr1.1:57093831-57093850 None:intergenic 40.0%
TATTTCAGGGCTCAAGTAGT+TGG - chr1.1:57093035-57093054 MS.gene062256:CDS 40.0%
TGTGCCAACCTATGAAGATA+AGG - chr1.1:57093745-57093764 MS.gene062256:intron 40.0%
TTGCATTTCTCCATTGCTCT+TGG + chr1.1:57094663-57094682 None:intergenic 40.0%
TTGTCAAGTCAACCTTACGA+AGG + chr1.1:57093193-57093212 None:intergenic 40.0%
! CATGAATGAGAGCAAGTTGA+TGG - chr1.1:57093700-57093719 MS.gene062256:intron 40.0%
! TACTGCTGCTGCATTTGTTA+AGG - chr1.1:57093145-57093164 MS.gene062256:intron 40.0%
!! GAATGAGAAGAGTGCTTCAA+AGG - chr1.1:57092238-57092257 MS.gene062256:intron 40.0%
AAAATGACACGCACACAAGG+GGG + chr1.1:57094588-57094607 None:intergenic 45.0%
AAAGGAGAAGACCCTCCTTA+AGG - chr1.1:57092256-57092275 MS.gene062256:intron 45.0%
AAGCGTCTGCGCATAATGAA+AGG - chr1.1:57094003-57094022 MS.gene062256:intron 45.0%
ATGAAGATAAGGATGGCGAC+TGG - chr1.1:57093756-57093775 MS.gene062256:intron 45.0%
ATGGAGGTTGGATGAGCTAT+AGG + chr1.1:57093815-57093834 None:intergenic 45.0%
CAAAATGACACGCACACAAG+GGG + chr1.1:57094589-57094608 None:intergenic 45.0%
CACAAAATGACACGCACACA+AGG + chr1.1:57094591-57094610 None:intergenic 45.0%
CATTTCAGCACCAAGAGCAA+TGG - chr1.1:57094650-57094669 MS.gene062256:CDS 45.0%
GCTATAGGAACTTACTCCCA+TGG + chr1.1:57093800-57093819 None:intergenic 45.0%
GGGAAAACTTACTTAGCTGG+TGG + chr1.1:57092293-57092312 None:intergenic 45.0%
GTCGCCATCCTTATCTTCAT+AGG + chr1.1:57093756-57093775 None:intergenic 45.0%
TTCTTCCTGTATGACCTCAC+TGG + chr1.1:57093068-57093087 None:intergenic 45.0%
! AAGGAGACTGAGCTTTGTCT+TGG - chr1.1:57092089-57092108 MS.gene062256:intron 45.0%
! GGTGAAGGAGCTGAACATTT+TGG + chr1.1:57093252-57093271 None:intergenic 45.0%
!! TTCTGAGGTGGAAACTCCAA+GGG - chr1.1:57092148-57092167 MS.gene062256:intron 45.0%
!!! CTTGTGTGCGTGTCATTTTG+TGG - chr1.1:57094589-57094608 MS.gene062256:CDS 45.0%
!!! GGAGCTGAACATTTTGGCTA+AGG + chr1.1:57093246-57093265 None:intergenic 45.0%
!! ATTATATTAATAATATTTCA+GGG - chr1.1:57093022-57093041 MS.gene062256:CDS 5.0%
!! ATTTGTAATATTTATATATA+TGG - chr1.1:57093316-57093335 MS.gene062256:intron 5.0%
!! TATTATATTAATAATATTTC+AGG - chr1.1:57093021-57093040 MS.gene062256:CDS 5.0%
AAATGACACGCACACAAGGG+GGG + chr1.1:57094587-57094606 None:intergenic 50.0%
ACTTAGCTGGTGGCTTAGCA+GGG + chr1.1:57092283-57092302 None:intergenic 50.0%
AGGATGCATGGCGATTGTTG+AGG - chr1.1:57093540-57093559 MS.gene062256:CDS 50.0%
ATAGGTAACTATGGGGCCCA+AGG - chr1.1:57093665-57093684 MS.gene062256:CDS 50.0%
ATGTTCAGCTCCTTCACCAC+TGG - chr1.1:57093254-57093273 MS.gene062256:intron 50.0%
CTTAGCAGGGTCCTTAAGGA+GGG + chr1.1:57092270-57092289 None:intergenic 50.0%
GACAAAGCTCAGTCTCCTTC+AGG + chr1.1:57092088-57092107 None:intergenic 50.0%
GGATCAGAAGCTATTGGGCT+TGG - chr1.1:57094024-57094043 MS.gene062256:intron 50.0%
GTTCAATCCATGCCCCATAG+TGG + chr1.1:57092066-57092085 None:intergenic 50.0%
TACTTAGCTGGTGGCTTAGC+AGG + chr1.1:57092284-57092303 None:intergenic 50.0%
TAGTAGCTGGAGATGGAGGT+TGG + chr1.1:57093827-57093846 None:intergenic 50.0%
TCAGGGCTCAAGTAGTTGGT+TGG - chr1.1:57093039-57093058 MS.gene062256:CDS 50.0%
TTCCTGTATGACCTCACTGG+TGG + chr1.1:57093065-57093084 None:intergenic 50.0%
! AAGGTAAGGTGCTCCATCCA+TGG + chr1.1:57093174-57093193 None:intergenic 50.0%
! TGGAGCACCTTACCTTCGTA+AGG - chr1.1:57093178-57093197 MS.gene062256:intron 50.0%
!! GTTCTGAGGTGGAAACTCCA+AGG - chr1.1:57092147-57092166 MS.gene062256:intron 50.0%
CTTTGTCTTGGTCTGCCTGG+TGG - chr1.1:57092101-57092120 MS.gene062256:intron 55.0%
GCTTAGCAGGGTCCTTAAGG+AGG + chr1.1:57092271-57092290 None:intergenic 55.0%
GTGGCTTAGCAGGGTCCTTA+AGG + chr1.1:57092274-57092293 None:intergenic 55.0%
! GAGCTTTGTCTTGGTCTGCC+TGG - chr1.1:57092098-57092117 MS.gene062256:intron 55.0%
! GGGGCATGGATTGAACCTGA+AGG - chr1.1:57092070-57092089 MS.gene062256:CDS 55.0%
! TAGTTGGTTGGCCACCAGTG+AGG - chr1.1:57093051-57093070 MS.gene062256:CDS 55.0%
CCAAGGGCTTCTGCGAAGAG+AGG - chr1.1:57092164-57092183 MS.gene062256:intron 60.0%
CCTCTCTTCGCAGAAGCCCT+TGG + chr1.1:57092167-57092186 None:intergenic 60.0%
GATGGCGACTGGATGCTCGT+GGG - chr1.1:57093767-57093786 MS.gene062256:intron 60.0%
GCACACAAGGGGGGACTCAA+GGG + chr1.1:57094578-57094597 None:intergenic 60.0%
GCTCGTGGGAGATGTCCCAT+GGG - chr1.1:57093781-57093800 MS.gene062256:intron 60.0%
GGCCACCAGTGAGGTCATAC+AGG - chr1.1:57093060-57093079 MS.gene062256:CDS 60.0%
TGCTCGTGGGAGATGTCCCA+TGG - chr1.1:57093780-57093799 MS.gene062256:intron 60.0%
TGTCTTGGTCTGCCTGGTGG+TGG - chr1.1:57092104-57092123 MS.gene062256:intron 60.0%
CGCACACAAGGGGGGACTCA+AGG + chr1.1:57094579-57094598 None:intergenic 65.0%
GGATGGCGACTGGATGCTCG+TGG - chr1.1:57093766-57093785 MS.gene062256:intron 65.0%
!! CGGTGGAGGTGGTTCTGAGG+TGG - chr1.1:57092136-57092155 MS.gene062256:intron 65.0%
!! CTTGGTCTGCCTGGTGGTGG+TGG - chr1.1:57092107-57092126 MS.gene062256:intron 65.0%
! CGGCGGTGGAGGTGGTTCTG+AGG - chr1.1:57092133-57092152 MS.gene062256:intron 70.0%
!! GGTCTGCCTGGTGGTGGTGG+CGG - chr1.1:57092110-57092129 MS.gene062256:intron 70.0%
!! CTGCCTGGTGGTGGTGGCGG+CGG - chr1.1:57092113-57092132 MS.gene062256:intron 75.0%
!!! CCTGGTGGTGGTGGCGGCGG+CGG - chr1.1:57092116-57092135 MS.gene062256:intron 80.0%
! CCGCCGCCGCCACCACCACC+AGG + chr1.1:57092119-57092138 None:intergenic 85.0%
!! GGTGGCGGCGGCGGTGGAGG+TGG - chr1.1:57092125-57092144 MS.gene062256:intron 85.0%
!!! GGTGGTGGCGGCGGCGGTGG+AGG - chr1.1:57092122-57092141 MS.gene062256:intron 85.0%
!!! GGTGGTGGTGGCGGCGGCGG+TGG - chr1.1:57092119-57092138 MS.gene062256:intron 85.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 57092059 57094695 57092059 ID=MS.gene062256
chr1.1 mRNA 57092059 57094695 57092059 ID=MS.gene062256.t1;Parent=MS.gene062256
chr1.1 exon 57094454 57094695 57094454 ID=MS.gene062256.t1.exon1;Parent=MS.gene062256.t1
chr1.1 CDS 57094454 57094695 57094454 ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1
chr1.1 exon 57093479 57093711 57093479 ID=MS.gene062256.t1.exon2;Parent=MS.gene062256.t1
chr1.1 CDS 57093479 57093711 57093479 ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1
chr1.1 exon 57092950 57093085 57092950 ID=MS.gene062256.t1.exon3;Parent=MS.gene062256.t1
chr1.1 CDS 57092950 57093085 57092950 ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1
chr1.1 exon 57092709 57092770 57092709 ID=MS.gene062256.t1.exon4;Parent=MS.gene062256.t1
chr1.1 CDS 57092709 57092770 57092709 ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1
chr1.1 exon 57092059 57092096 57092059 ID=MS.gene062256.t1.exon5;Parent=MS.gene062256.t1
chr1.1 CDS 57092059 57092096 57092059 ID=cds.MS.gene062256.t1;Parent=MS.gene062256.t1
Gene Sequence

>MS.gene062256

ATGGCCACTATGGGGCATGGATTGAACCTGAAGGAGACTGAGCTTTGTCTTGGTCTGCCTGGTGGTGGTGGCGGCGGCGGTGGAGGTGGTTCTGAGGTGGAAACTCCAAGGGCTTCTGCGAAGAGAGGTTTCTCTGAGACTGTTGATCTGAAGCTTAATCTTCAAACCAAGGAAGATCTGAATGAGAAGAGTGCTTCAAAGGAGAAGACCCTCCTTAAGGACCCTGCTAAGCCACCAGCTAAGTAAGTTTTCCCAATTAAAGTACTTGCATGCTTTCTTGTCTAGTTTTTTTTTTTATAACTTTCTTGGATCTAGCATTATAGATTTCACTTTTTGAACACCAAAACAACATTTACTAAACAAGCACGTATTTACTTATAAGAAATGATATTTGTACAATTGTTCTATGGTAATTTTTTGACAATTTTCTCTCAGTCACGTTATGTTATTATTTCCTCTCTTCTTTTTTCTCTCTCTATTTTTTTTTTACCAATAAGAAGATAGAAAAGAAAGGTTGTCATAAAATAGTTGTATAAATGTTATTACATTTACATGTATACTATTTGTATATGAGTTGGAGTACCCCTTATATCGTTTTTTCATATTGTACTTTGTTGTTCAAAAACATAATTTACTAAACAAGCATTATGGATTCTCAAACCCAAATGGAAGATAGAAAAAAAAGTGATAAGTTGATATATGCAACATCTTATAATGTTTTTTATAAGTAATTTTTTTATTAATTGAAATATAAAGAGTTCTCTAACCCACAAATGCTTGTAATTTTGATGTTCTCTTTTTCTTTTCTTTTTTCCATTTTTCTTCAAATTAATAATATATGTTTTCTTAGAGCTGCAGTATATAGTTTATAGTTTGCATGTATACGAGTTTCCAAATTTTATGCAATTTTTTAAGCCTTGGAGAGAAAAGAATAATTGAGATTTATAGGGATTTGAAATGAATATTATATTAATAATATTTCAGGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAACAATACTGAGGACACTGAGAAGACAACAAGTAACACTACTGCTGCTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTGACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAATTAATTAGTACTACATTAAAAATCTCCTATGCTTGTATTTGTAATATTTATATATATGGTTGTTTCAAACCCCATCTAAACCAGACAAAATGCTGAAAGATTAATCTCTCGAGTCACGTAGAATCACACTAGATAGTAAAACTTTCTTCCTAAAGTCCATACCTAGCTATTTGATATAGTTTATTAATAAATCTGAAGACCATCATCACAACAAAAAAAAAGTATTATTATTAATATTATTATAAGGTTTTAGATCTTGAAGGATGCATGGCGATTGTTGAGGATGCATGTGCTAGTTAGATTAATTATTATCATCTTGGGATTGTTACATTCTAGATTCATGATTAATTTGAGTGATTAATTAATTTATTAATTTATATATATTATAGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGTAAGTTCCTATAGCTCATCCAACCTCCATCTCCAGCTACTATATACTACAGTCATTAATTTATTTTTATATCTATATAAATTAGTCCCCAAAAAACATATATATGTACTTGGTTTAATTTACCAACCACATATTTACACATCCATGAAATTAACATTGGTTATTTAAATTTTTTGAAGGATGTTTGTTGGATCATGCAAGCGTCTGCGCATAATGAAAGGATCAGAAGCTATTGGGCTTGGTATGAATCTTTCTATATATCTTACTTGCATTAATATTTTGTACTTAACTCATGGAAGTATGCTTGGAATTACTAATTCTATTATAAGTATGAATTGAACTTAGATAGTGTCAAAATTACTCGACTCTATGCACTAACCACTTGCATTATACTTGATGCACTAATAATTTTCAATAACATTAAGTAGAACCTAAACTTAATCCTTAAGACCAACAAAAAATAAATCATTGAATTGAAAATCTTAGATGGAAATGAAGTTCACGAAATTTAATGTGATTTTAAAACTACTTGATATATACTTCATTTCATAATTTTATTTTAAATATGTATTTACTATTAAATTATTATAAACCTTCAAATATCTAAATTATCATGACTAGTTGTGTTTTGTGTACACATGACCAACATAATGTAAATATGATTTAATAGTTGGAATTATATATTTAAAATTATTACAAGTTTTTTTAGTAACATAAAGTTATTAAAAAATACTAAATGTTTTACTTGTACTATATATAATTCATTCACACCCTTGAGTCCCCCCTTGTGTGCGTGTCATTTTGTGGCTATTTATTCTAACTTATTGGCATCTAATTTTTATGTACATTTCAGCACCAAGAGCAATGGAGAAATGCAAAAACCGAAGCTGA

Protein sequence

>MS.gene062256.t1

MATMGHGLNLKETELCLGLPGGGGGGGGGGSEVETPRASAKRGFSETVDLKLNLQTKEDLNEKSASKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNTEDTEKTTSNTTAAAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS