Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004875.t1 | KEH42778.1 | 99.1 | 224 | 2 | 0 | 1 | 224 | 1 | 224 | 2.10E-112 | 415.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004875.t1 | Q38832 | 72.8 | 224 | 46 | 4 | 8 | 224 | 1 | 216 | 4.7e-81 | 302.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004875.t1 | G7I476 | 99.1 | 224 | 2 | 0 | 1 | 224 | 1 | 224 | 1.5e-112 | 415.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene004875.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005133 | MS.gene004875 | PPI |
| MS.gene062256 | MS.gene004875 | PPI |
| MS.gene004875 | MS.gene70825 | PPI |
| MS.gene44001 | MS.gene004875 | PPI |
| MS.gene004875 | MS.gene07402 | PPI |
| MS.gene004875 | MS.gene69940 | PPI |
| MS.gene85573 | MS.gene004875 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004875.t1 | MTR_1g093240 | 97.391 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 1.68e-167 | 465 |
| MS.gene004875.t1 | MTR_1g093240 | 99.554 | 224 | 1 | 0 | 1 | 224 | 1 | 224 | 1.99e-167 | 465 |
| MS.gene004875.t1 | MTR_1g093240 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 2.78e-151 | 422 |
| MS.gene004875.t1 | MTR_1g070520 | 66.960 | 227 | 51 | 7 | 12 | 224 | 17 | 233 | 1.21e-92 | 275 |
| MS.gene004875.t1 | MTR_7g096090 | 61.864 | 236 | 67 | 5 | 6 | 224 | 9 | 238 | 8.10e-88 | 263 |
| MS.gene004875.t1 | MTR_1g080860 | 61.638 | 232 | 69 | 6 | 8 | 224 | 15 | 241 | 5.33e-87 | 261 |
| MS.gene004875.t1 | MTR_1g080860 | 61.638 | 232 | 69 | 6 | 8 | 224 | 15 | 241 | 6.98e-87 | 261 |
| MS.gene004875.t1 | MTR_6g488150 | 49.388 | 245 | 83 | 6 | 6 | 224 | 13 | 242 | 6.54e-70 | 218 |
| MS.gene004875.t1 | MTR_5g030710 | 46.715 | 274 | 88 | 7 | 8 | 224 | 51 | 323 | 2.03e-63 | 204 |
| MS.gene004875.t1 | MTR_8g103030 | 46.768 | 263 | 91 | 8 | 7 | 224 | 23 | 281 | 3.58e-62 | 199 |
| MS.gene004875.t1 | MTR_2g101500 | 42.667 | 300 | 97 | 8 | 8 | 233 | 25 | 323 | 1.79e-60 | 196 |
| MS.gene004875.t1 | MTR_8g067530 | 43.750 | 272 | 96 | 6 | 8 | 224 | 75 | 344 | 6.98e-60 | 196 |
| MS.gene004875.t1 | MTR_5g067350 | 62.585 | 147 | 53 | 2 | 78 | 224 | 191 | 335 | 1.73e-59 | 194 |
| MS.gene004875.t1 | MTR_1g070830 | 46.429 | 224 | 79 | 6 | 8 | 224 | 12 | 201 | 2.52e-53 | 174 |
| MS.gene004875.t1 | MTR_1g076270 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 1.42e-51 | 168 |
| MS.gene004875.t1 | MTR_1g093350 | 46.083 | 217 | 68 | 6 | 8 | 224 | 11 | 178 | 1.42e-51 | 168 |
| MS.gene004875.t1 | MTR_1g040675 | 42.986 | 221 | 83 | 6 | 8 | 224 | 1 | 182 | 7.40e-49 | 162 |
| MS.gene004875.t1 | MTR_4g011880 | 41.518 | 224 | 73 | 6 | 1 | 224 | 1 | 166 | 9.79e-38 | 132 |
| MS.gene004875.t1 | MTR_1g040675 | 39.901 | 203 | 75 | 7 | 8 | 204 | 1 | 162 | 2.23e-36 | 129 |
| MS.gene004875.t1 | MTR_2g102490 | 39.437 | 213 | 81 | 7 | 10 | 219 | 16 | 183 | 2.44e-36 | 129 |
| MS.gene004875.t1 | MTR_1g069495 | 41.477 | 176 | 70 | 3 | 82 | 224 | 81 | 256 | 2.06e-33 | 124 |
| MS.gene004875.t1 | MTR_6g488150 | 40.556 | 180 | 68 | 5 | 6 | 161 | 13 | 177 | 7.27e-33 | 120 |
| MS.gene004875.t1 | MTR_8g014520 | 37.870 | 169 | 65 | 4 | 80 | 220 | 104 | 260 | 1.50e-28 | 111 |
| MS.gene004875.t1 | MTR_8g014520 | 37.870 | 169 | 65 | 4 | 80 | 220 | 104 | 260 | 1.55e-28 | 111 |
| MS.gene004875.t1 | MTR_2g100780 | 39.412 | 170 | 72 | 5 | 77 | 220 | 90 | 254 | 1.22e-27 | 108 |
| MS.gene004875.t1 | MTR_2g100780 | 38.824 | 170 | 73 | 5 | 77 | 220 | 90 | 254 | 2.64e-27 | 108 |
| MS.gene004875.t1 | MTR_5g067350 | 58.537 | 82 | 33 | 1 | 78 | 159 | 191 | 271 | 1.08e-24 | 100 |
| MS.gene004875.t1 | MTR_4g124300 | 32.867 | 143 | 67 | 4 | 81 | 221 | 69 | 184 | 3.50e-19 | 84.0 |
| MS.gene004875.t1 | MTR_1g085750 | 41.509 | 106 | 48 | 3 | 113 | 217 | 78 | 170 | 9.59e-17 | 77.0 |
| MS.gene004875.t1 | MTR_3g106850 | 26.950 | 141 | 83 | 3 | 83 | 221 | 88 | 210 | 1.47e-16 | 77.4 |
| MS.gene004875.t1 | MTR_4g115075 | 28.889 | 135 | 73 | 3 | 84 | 217 | 93 | 205 | 5.52e-15 | 72.8 |
| MS.gene004875.t1 | MTR_7g110790 | 39.604 | 101 | 47 | 4 | 118 | 217 | 68 | 155 | 4.01e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004875.t1 | AT4G14550 | 74.107 | 224 | 43 | 4 | 8 | 224 | 1 | 216 | 3.95e-113 | 327 |
| MS.gene004875.t1 | AT4G14550 | 74.107 | 224 | 43 | 4 | 8 | 224 | 1 | 216 | 3.96e-113 | 327 |
| MS.gene004875.t1 | AT3G23050 | 69.915 | 236 | 49 | 5 | 4 | 224 | 2 | 230 | 6.01e-110 | 319 |
| MS.gene004875.t1 | AT4G14550 | 72.414 | 203 | 41 | 4 | 8 | 203 | 1 | 195 | 2.22e-98 | 288 |
| MS.gene004875.t1 | AT1G04250 | 64.317 | 227 | 55 | 5 | 8 | 224 | 7 | 217 | 1.24e-95 | 283 |
| MS.gene004875.t1 | AT3G23050 | 68.056 | 216 | 47 | 5 | 4 | 204 | 2 | 210 | 2.77e-95 | 281 |
| MS.gene004875.t1 | AT3G04730 | 62.609 | 230 | 66 | 4 | 8 | 224 | 2 | 224 | 2.76e-93 | 277 |
| MS.gene004875.t1 | AT4G29080 | 47.191 | 267 | 102 | 8 | 6 | 233 | 36 | 302 | 2.51e-64 | 205 |
| MS.gene004875.t1 | AT4G14550 | 66.667 | 159 | 38 | 4 | 8 | 159 | 1 | 151 | 1.91e-62 | 196 |
| MS.gene004875.t1 | AT5G65670 | 43.609 | 266 | 99 | 6 | 8 | 224 | 61 | 324 | 1.13e-59 | 194 |
| MS.gene004875.t1 | AT5G65670 | 43.609 | 266 | 99 | 6 | 8 | 224 | 61 | 324 | 1.26e-59 | 194 |
| MS.gene004875.t1 | AT3G23050 | 60.694 | 173 | 46 | 5 | 4 | 161 | 2 | 167 | 1.78e-59 | 188 |
| MS.gene004875.t1 | AT2G22670 | 52.217 | 203 | 76 | 5 | 41 | 224 | 107 | 307 | 1.37e-57 | 188 |
| MS.gene004875.t1 | AT2G22670 | 52.217 | 203 | 76 | 5 | 41 | 224 | 107 | 307 | 1.37e-57 | 188 |
| MS.gene004875.t1 | AT2G22670 | 52.217 | 203 | 76 | 5 | 41 | 224 | 107 | 307 | 1.66e-57 | 188 |
| MS.gene004875.t1 | AT2G22670 | 52.217 | 203 | 76 | 5 | 41 | 224 | 107 | 307 | 1.66e-57 | 188 |
| MS.gene004875.t1 | AT2G22670 | 52.217 | 203 | 76 | 5 | 41 | 224 | 124 | 324 | 1.87e-57 | 189 |
| MS.gene004875.t1 | AT1G04240 | 47.511 | 221 | 80 | 7 | 4 | 224 | 1 | 185 | 1.31e-54 | 176 |
| MS.gene004875.t1 | AT1G04240 | 46.875 | 224 | 83 | 7 | 1 | 224 | 98 | 285 | 1.08e-53 | 177 |
| MS.gene004875.t1 | AT5G43700 | 48.848 | 217 | 65 | 8 | 8 | 224 | 11 | 181 | 3.77e-52 | 170 |
| MS.gene004875.t1 | AT3G23030 | 44.344 | 221 | 68 | 6 | 8 | 228 | 9 | 174 | 1.07e-49 | 163 |
| MS.gene004875.t1 | AT3G23030 | 44.444 | 225 | 62 | 7 | 8 | 228 | 96 | 261 | 5.18e-49 | 164 |
| MS.gene004875.t1 | AT4G14560 | 43.519 | 216 | 66 | 5 | 6 | 221 | 5 | 164 | 9.01e-44 | 148 |
| MS.gene004875.t1 | AT1G15580 | 40.639 | 219 | 70 | 4 | 1 | 219 | 1 | 159 | 5.17e-43 | 146 |
| MS.gene004875.t1 | AT3G15540 | 40.807 | 223 | 90 | 7 | 6 | 224 | 4 | 188 | 3.93e-39 | 137 |
| MS.gene004875.t1 | AT1G52830 | 38.813 | 219 | 96 | 6 | 6 | 224 | 4 | 184 | 3.40e-37 | 132 |
| MS.gene004875.t1 | AT2G33310 | 45.181 | 166 | 67 | 6 | 78 | 224 | 70 | 230 | 3.74e-37 | 133 |
| MS.gene004875.t1 | AT2G33310 | 45.181 | 166 | 67 | 6 | 78 | 224 | 70 | 230 | 3.74e-37 | 133 |
| MS.gene004875.t1 | AT2G33310 | 44.578 | 166 | 68 | 6 | 78 | 224 | 71 | 231 | 7.10e-36 | 130 |
| MS.gene004875.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 4.39e-35 | 128 |
| MS.gene004875.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 4.51e-35 | 128 |
| MS.gene004875.t1 | AT4G28640 | 48.387 | 155 | 64 | 5 | 83 | 223 | 88 | 240 | 1.22e-33 | 125 |
| MS.gene004875.t1 | AT3G16500 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 3.70e-33 | 123 |
| MS.gene004875.t1 | AT3G16500 | 38.095 | 231 | 108 | 8 | 11 | 220 | 36 | 252 | 4.77e-33 | 123 |
| MS.gene004875.t1 | AT1G04550 | 40.828 | 169 | 73 | 3 | 76 | 224 | 62 | 223 | 1.09e-31 | 119 |
| MS.gene004875.t1 | AT1G04100 | 40.719 | 167 | 70 | 4 | 85 | 224 | 95 | 259 | 2.30e-29 | 113 |
| MS.gene004875.t1 | AT1G51950 | 42.073 | 164 | 66 | 6 | 80 | 220 | 93 | 250 | 7.83e-28 | 109 |
| MS.gene004875.t1 | AT5G25890 | 38.650 | 163 | 76 | 3 | 62 | 224 | 29 | 167 | 2.99e-27 | 105 |
| MS.gene004875.t1 | AT3G17600 | 32.877 | 146 | 68 | 4 | 75 | 217 | 36 | 154 | 5.18e-21 | 88.2 |
| MS.gene004875.t1 | AT2G46990 | 40.385 | 104 | 49 | 2 | 114 | 217 | 80 | 170 | 1.36e-18 | 82.0 |
| MS.gene004875.t1 | AT3G62100 | 38.889 | 108 | 53 | 2 | 110 | 217 | 74 | 168 | 2.72e-18 | 81.3 |
| MS.gene004875.t1 | AT2G46990 | 40.659 | 91 | 41 | 2 | 114 | 204 | 80 | 157 | 4.52e-14 | 69.3 |
| MS.gene004875.t1 | AT3G62100 | 37.895 | 95 | 46 | 2 | 110 | 204 | 74 | 155 | 2.75e-13 | 67.0 |
| MS.gene004875.t1 | AT1G80390 | 34.000 | 150 | 61 | 3 | 9 | 158 | 15 | 126 | 3.25e-13 | 66.2 |
| MS.gene004875.t1 | AT4G32280 | 24.242 | 198 | 99 | 5 | 50 | 217 | 64 | 240 | 7.43e-13 | 67.8 |
| MS.gene004875.t1 | AT4G32280 | 30.612 | 98 | 50 | 1 | 120 | 217 | 119 | 198 | 6.38e-12 | 64.3 |
Find 99 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAAGGAGCTGAACATTT+TGG | 0.275554 | 1.4:+62484541 | None:intergenic |
| GGTGGTGGTGGCGGCGGCGG+TGG | 0.280712 | 1.4:-62485670 | MS.gene004875:CDS |
| ATATATATTATAGGTAACTA+TGG | 0.289007 | 1.4:-62484122 | MS.gene004875:intron |
| GGTCGTACCCTTCGTCGAAC+CGG | 0.331280 | 1.4:+62481026 | None:intergenic |
| CTTCTCATTCAGATCTTCCT+TGG | 0.341646 | 1.4:+62485564 | None:intergenic |
| GGTGGTGGCGGCGGCGGTGG+AGG | 0.343665 | 1.4:-62485667 | MS.gene004875:CDS |
| TACTTAGCTGGTGGCTTAGC+AGG | 0.347183 | 1.4:+62485508 | None:intergenic |
| GGTGGCGGCGGCGGTGGAGG+TGG | 0.350359 | 1.4:-62485664 | MS.gene004875:CDS |
| GACAAAGCTCAGTCTCCTTC+AGG | 0.370771 | 1.4:+62485704 | None:intergenic |
| ATGAAAGGATCAGAAGCTAT+TGG | 0.371063 | 1.4:-62483760 | MS.gene004875:CDS |
| CCTGGTGGTGGTGGCGGCGG+CGG | 0.379613 | 1.4:-62485673 | MS.gene004875:CDS |
| GGCATCAGATAAATCTTTGT+AGG | 0.380510 | 1.4:+62484568 | None:intergenic |
| GTGGCTTAGCAGGGTCCTTA+AGG | 0.389548 | 1.4:+62485518 | None:intergenic |
| TACTGCTGCTGCATTTGTTA+AGG | 0.392669 | 1.4:-62484645 | MS.gene004875:CDS |
| CATGAATGAGAGCAAGTTGA+TGG | 0.395903 | 1.4:-62484078 | MS.gene004875:CDS |
| CGCAAACGGACCGGCTGCCT+CGG | 0.403860 | 1.4:+62480904 | None:intergenic |
| CGCAAACGGACCGGCTGCCT+CGG | 0.403860 | 1.4:+62481005 | None:intergenic |
| CTGCCTGGTGGTGGTGGCGG+CGG | 0.419116 | 1.4:-62485676 | MS.gene004875:CDS |
| GTTGCTGCTTTCTGCGCAAA+CGG | 0.424152 | 1.4:+62480890 | None:intergenic |
| GTTGCTGCTTTCTGCGCAAA+CGG | 0.424152 | 1.4:+62480991 | None:intergenic |
| TGAAAGGATCAGAAGCTATT+GGG | 0.427068 | 1.4:-62483759 | MS.gene004875:CDS |
| ATTGGGAAAACTTACTTAGC+TGG | 0.432635 | 1.4:+62485496 | None:intergenic |
| TCATGAAGTCTATCATTCCT+TGG | 0.436607 | 1.4:+62484096 | None:intergenic |
| GAGCTTTGTCTTGGTCTGCC+TGG | 0.443783 | 1.4:-62485691 | MS.gene004875:CDS |
| TCAGCAACGACGATACAAAC+AGG | 0.448728 | 1.4:-62480933 | MS.gene004875:CDS |
| TTTGTTAAGGTTTCCATGGA+TGG | 0.449811 | 1.4:-62484632 | MS.gene004875:CDS |
| AAGGAGACTGAGCTTTGTCT+TGG | 0.456647 | 1.4:-62485700 | MS.gene004875:CDS |
| GGATCAGAAGCTATTGGGCT+TGG | 0.459856 | 1.4:-62483754 | MS.gene004875:intron |
| CTTGGTCTGCCTGGTGGTGG+TGG | 0.460328 | 1.4:-62485682 | MS.gene004875:CDS |
| CATGAAGTCTATCATTCCTT+GGG | 0.461454 | 1.4:+62484097 | None:intergenic |
| TATTTCAGGGCTCAAGTAGT+TGG | 0.461914 | 1.4:-62484755 | MS.gene004875:intron |
| TGTCTTGGTCTGCCTGGTGG+TGG | 0.462328 | 1.4:-62485685 | MS.gene004875:CDS |
| TATATATTATAGGTAACTAT+GGG | 0.462994 | 1.4:-62484121 | MS.gene004875:intron |
| AAAGGAGAAGACCCTCCTTA+AGG | 0.463373 | 1.4:-62485533 | MS.gene004875:CDS |
| GTCGCCATCCTTATCTTCAT+AGG | 0.465608 | 1.4:+62484025 | None:intergenic |
| GAAGAACATGATGGCACAAA+AGG | 0.465863 | 1.4:-62484708 | MS.gene004875:CDS |
| CCTCTCTTCGCAGAAGCCCT+TGG | 0.474958 | 1.4:+62485625 | None:intergenic |
| GTCGTACCCTTCGTCGAACC+GGG | 0.480579 | 1.4:+62481027 | None:intergenic |
| TGCTTTCTGCGCAAACGGAC+CGG | 0.486817 | 1.4:+62480895 | None:intergenic |
| TGCTTTCTGCGCAAACGGAC+CGG | 0.486817 | 1.4:+62480996 | None:intergenic |
| GCTTAGCAGGGTCCTTAAGG+AGG | 0.489152 | 1.4:+62485521 | None:intergenic |
| GGCCACCAGTGAGGTCATAC+AGG | 0.498221 | 1.4:-62484730 | MS.gene004875:CDS |
| GGTCTGCCTGGTGGTGGTGG+CGG | 0.503771 | 1.4:-62485679 | MS.gene004875:CDS |
| ATCAAAGCCCGGTTCGACGA+AGG | 0.505289 | 1.4:-62481034 | MS.gene004875:CDS |
| CCATCCTTATCTTCATAGGT+TGG | 0.508321 | 1.4:+62484029 | None:intergenic |
| CGGTGGAGGTGGTTCTGAGG+TGG | 0.509616 | 1.4:-62485653 | MS.gene004875:CDS |
| GAATGAGAAGAGTGCTTCAA+AGG | 0.512968 | 1.4:-62485551 | MS.gene004875:CDS |
| TGCATTTGTTAAGGTTTCCA+TGG | 0.525650 | 1.4:-62484636 | MS.gene004875:CDS |
| CCGCCGCCGCCACCACCACC+AGG | 0.530029 | 1.4:+62485673 | None:intergenic |
| TCAAAGCCCGGTTCGACGAA+GGG | 0.532431 | 1.4:-62481033 | MS.gene004875:CDS |
| TGTGCCAACCTATGAAGATA+AGG | 0.537235 | 1.4:-62484033 | MS.gene004875:CDS |
| TCAGGGCTCAAGTAGTTGGT+TGG | 0.538535 | 1.4:-62484751 | MS.gene004875:intron |
| ACTTAGCTGGTGGCTTAGCA+GGG | 0.540758 | 1.4:+62485509 | None:intergenic |
| TTCTTCCTGTATGACCTCAC+TGG | 0.545123 | 1.4:+62484725 | None:intergenic |
| AAGGTAAGGTGCTCCATCCA+TGG | 0.548189 | 1.4:+62484619 | None:intergenic |
| CAGGGTACGACCGAGGCAGC+CGG | 0.556484 | 1.4:-62480914 | MS.gene004875:CDS |
| AAGTCAACCTTACGAAGGTA+AGG | 0.557851 | 1.4:+62484605 | None:intergenic |
| AAGGGTACGACCGAGGCAGC+CGG | 0.558160 | 1.4:-62481015 | MS.gene004875:CDS |
| TGCTCGTGGGAGATGTCCCA+TGG | 0.560169 | 1.4:-62483998 | MS.gene004875:CDS |
| GTTCTGAGGTGGAAACTCCA+AGG | 0.563503 | 1.4:-62485642 | MS.gene004875:CDS |
| TGGAGCACCTTACCTTCGTA+AGG | 0.564503 | 1.4:-62484612 | MS.gene004875:CDS |
| CCAAGGGCTTCTGCGAAGAG+AGG | 0.567370 | 1.4:-62485625 | MS.gene004875:CDS |
| ATGTTCAGCTCCTTCACCAC+TGG | 0.578252 | 1.4:-62484536 | MS.gene004875:intron |
| TAATTAATTACCAGTGGTGA+AGG | 0.579528 | 1.4:+62484526 | None:intergenic |
| CGACGGTAGGTATCAAAGCC+CGG | 0.584590 | 1.4:-62481045 | MS.gene004875:CDS |
| AATATGGCCACTATGGGGCA+TGG | 0.587296 | 1.4:-62485733 | MS.gene004875:CDS |
| CTTAGCAGGGTCCTTAAGGA+GGG | 0.587502 | 1.4:+62485522 | None:intergenic |
| GTTCAATCCATGCCCCATAG+TGG | 0.588585 | 1.4:+62485726 | None:intergenic |
| AAGCGTCTGCGCATAATGAA+AGG | 0.596352 | 1.4:-62483775 | MS.gene004875:CDS |
| GGATGGCGACTGGATGCTCG+TGG | 0.596688 | 1.4:-62484012 | MS.gene004875:CDS |
| ATGAAGATAAGGATGGCGAC+TGG | 0.598557 | 1.4:-62484022 | MS.gene004875:CDS |
| GCTATAGGAACTTACTCCCA+TGG | 0.598945 | 1.4:+62483981 | None:intergenic |
| TTCTGAGGTGGAAACTCCAA+GGG | 0.603496 | 1.4:-62485641 | MS.gene004875:CDS |
| GGGAAAACTTACTTAGCTGG+TGG | 0.604797 | 1.4:+62485499 | None:intergenic |
| CGGCGGTGGAGGTGGTTCTG+AGG | 0.606000 | 1.4:-62485656 | MS.gene004875:CDS |
| TTCCTGTATGACCTCACTGG+TGG | 0.606534 | 1.4:+62484728 | None:intergenic |
| ATAGGTAACTATGGGGCCCA+AGG | 0.608548 | 1.4:-62484113 | MS.gene004875:intron |
| GAAGCTTAATCTTCAAACCA+AGG | 0.609730 | 1.4:-62485581 | MS.gene004875:CDS |
| CTTTGTCTTGGTCTGCCTGG+TGG | 0.610253 | 1.4:-62485688 | MS.gene004875:CDS |
| CTATAGGAACTTACTCCCAT+GGG | 0.622755 | 1.4:+62483982 | None:intergenic |
| GGGGCATGGATTGAACCTGA+AGG | 0.627746 | 1.4:-62485719 | MS.gene004875:CDS |
| AACGCAGAAAGCAGCAACGA+CGG | 0.639549 | 1.4:-62480971 | MS.gene004875:CDS |
| CCAACCTATGAAGATAAGGA+TGG | 0.646142 | 1.4:-62484029 | MS.gene004875:CDS |
| AACGACGGTACAAGTAGTGT+CGG | 0.646889 | 1.4:-62480813 | MS.gene004875:CDS |
| AACGACGGTACAAGTAGTGT+CGG | 0.646889 | 1.4:-62480956 | MS.gene004875:CDS |
| GCTCGTGGGAGATGTCCCAT+GGG | 0.650152 | 1.4:-62483997 | MS.gene004875:CDS |
| GTCATACAGGAAGAACATGA+TGG | 0.666998 | 1.4:-62484717 | MS.gene004875:CDS |
| GATGGCGACTGGATGCTCGT+GGG | 0.667120 | 1.4:-62484011 | MS.gene004875:CDS |
| CGGAAAGCAGAAACGACGGT+AGG | 0.667551 | 1.4:-62481058 | MS.gene004875:intron |
| ATACAAACAGGGTACGACCG+AGG | 0.669615 | 1.4:-62480921 | MS.gene004875:CDS |
| TCTGCTTGAAGCAGCAACGA+CGG | 0.683244 | 1.4:-62480828 | MS.gene004875:CDS |
| CAGCAACGACGATACAAACA+GGG | 0.686137 | 1.4:-62480932 | MS.gene004875:CDS |
| TTCGACGAAGGGTACGACCG+AGG | 0.689447 | 1.4:-62481022 | MS.gene004875:CDS |
| AAAAGAATATGGCCACTATG+GGG | 0.689548 | 1.4:-62485738 | None:intergenic |
| TAGTTGGTTGGCCACCAGTG+AGG | 0.691007 | 1.4:-62484739 | MS.gene004875:CDS |
| ACAAAAGGTTAACAATACTG+AGG | 0.707970 | 1.4:-62484693 | MS.gene004875:CDS |
| TTGTCAAGTCAACCTTACGA+AGG | 0.716471 | 1.4:+62484600 | None:intergenic |
| TGCGCGGAAAGCAGAAACGA+CGG | 0.717735 | 1.4:-62481062 | MS.gene004875:intron |
| ATATATTATAGGTAACTATG+GGG | 0.717921 | 1.4:-62484120 | MS.gene004875:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATTTATATATATTAT+AGG | - | chr1.4:62482386-62482405 | MS.gene004875:intron | 0.0% |
| !! | TTATTATTAATATTATTATA+AGG | - | chr1.4:62482243-62482262 | MS.gene004875:intron | 0.0% |
| !! | ATAATAGTAATAATTAAACA+AGG | + | chr1.4:62483660-62483679 | None:intergenic | 10.0% |
| !! | GAATGTATATTTATAAATAA+AGG | + | chr1.4:62484728-62484747 | None:intergenic | 10.0% |
| !! | TTAAAAAATTGCATAAAATT+TGG | + | chr1.4:62481680-62481699 | None:intergenic | 10.0% |
| !!! | ATTATTAATTTGAAGAAAAA+TGG | + | chr1.4:62481602-62481621 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTATAACTTTCT+TGG | - | chr1.4:62481072-62481091 | MS.gene004875:intron | 10.0% |
| !! | AAAGAATAATTGAGATTTAT+AGG | - | chr1.4:62481712-62481731 | MS.gene004875:intron | 15.0% |
| !! | AAATATATCAGAACATATAT+GGG | + | chr1.4:62484293-62484312 | None:intergenic | 15.0% |
| !! | AAATCATATTTACATTATGT+TGG | + | chr1.4:62483190-62483209 | None:intergenic | 15.0% |
| !! | AATATGAAAAAACGATATAA+GGG | + | chr1.4:62481372-62481391 | None:intergenic | 15.0% |
| !! | ACATATTAGTAGTATTATTA+AGG | - | chr1.4:62484053-62484072 | MS.gene004875:CDS | 15.0% |
| !! | AGATTAATTATTATCATCTT+GGG | - | chr1.4:62482317-62482336 | MS.gene004875:intron | 15.0% |
| !! | ATATATATTATAGGTAACTA+TGG | - | chr1.4:62482395-62482414 | MS.gene004875:intron | 15.0% |
| !! | ATGATAATTTAGATATTTGA+AGG | + | chr1.4:62483140-62483159 | None:intergenic | 15.0% |
| !! | CATATTAGTAGTATTATTAA+GGG | - | chr1.4:62484054-62484073 | MS.gene004875:CDS | 15.0% |
| !! | TAAATATATCAGAACATATA+TGG | + | chr1.4:62484294-62484313 | None:intergenic | 15.0% |
| !! | TAGATTAATTATTATCATCT+TGG | - | chr1.4:62482316-62482335 | MS.gene004875:intron | 15.0% |
| !! | TATATATTATAGGTAACTAT+GGG | - | chr1.4:62482396-62482415 | MS.gene004875:intron | 15.0% |
| !! | TGTAAATATGATTTAATAGT+TGG | - | chr1.4:62483196-62483215 | MS.gene004875:intron | 15.0% |
| !!! | AAATAAAAAGAATCTCTTTT+AGG | + | chr1.4:62483760-62483779 | None:intergenic | 15.0% |
| !!! | AATAAAAAGAATCTCTTTTA+GGG | + | chr1.4:62483759-62483778 | None:intergenic | 15.0% |
| !!! | ATGAAATATCCATTATTTTA+AGG | - | chr1.4:62484174-62484193 | MS.gene004875:intron | 15.0% |
| !!! | TATTAATTTTTTTCAAGTGT+GGG | - | chr1.4:62483854-62483873 | MS.gene004875:intron | 15.0% |
| !!! | TGAAATATCCATTATTTTAA+GGG | - | chr1.4:62484175-62484194 | MS.gene004875:intron | 15.0% |
| !!! | TGGTTATTTAAATTTTTTGA+AGG | - | chr1.4:62482701-62482720 | MS.gene004875:intron | 15.0% |
| !!! | TTAAATATCCACTATTTTAA+GGG | - | chr1.4:62484238-62484257 | MS.gene004875:intron | 15.0% |
| !!! | TTCAATGATTTATTTTTTGT+TGG | + | chr1.4:62482998-62483017 | None:intergenic | 15.0% |
| !!! | TTTTTTTAATATATGCGAAA+GGG | + | chr1.4:62485218-62485237 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAATATATGCGAA+AGG | + | chr1.4:62485219-62485238 | None:intergenic | 15.0% |
| !! | AAAATGTTAAATTATCAACG+TGG | + | chr1.4:62484868-62484887 | None:intergenic | 20.0% |
| !! | AACAAACATATATATGTACT+TGG | - | chr1.4:62482634-62482653 | MS.gene004875:intron | 20.0% |
| !! | AAGTACATATATATGTTTGT+TGG | + | chr1.4:62482635-62482654 | None:intergenic | 20.0% |
| !! | AATAACCAATGTTAATTTCA+TGG | + | chr1.4:62482689-62482708 | None:intergenic | 20.0% |
| !! | AATAAGAAGATAGAAAAGAA+AGG | - | chr1.4:62481277-62481296 | MS.gene004875:intron | 20.0% |
| !! | AATATTACAAATACAAGCAT+AGG | + | chr1.4:62482035-62482054 | None:intergenic | 20.0% |
| !! | AATTTACTAAACAAGCATTA+TGG | - | chr1.4:62481414-62481433 | MS.gene004875:intron | 20.0% |
| !! | AGTACATATATATGTTTGTT+GGG | + | chr1.4:62482634-62482653 | None:intergenic | 20.0% |
| !! | ATAAACTATAACAAATAGCT+AGG | + | chr1.4:62482170-62482189 | None:intergenic | 20.0% |
| !! | ATATATTATAGGTAACTATG+GGG | - | chr1.4:62482397-62482416 | MS.gene004875:intron | 20.0% |
| !! | ATATGAAAAAACGATATAAG+GGG | + | chr1.4:62481371-62481390 | None:intergenic | 20.0% |
| !! | ATATTTGTGATCTTAGAAAT+TGG | + | chr1.4:62484971-62484990 | None:intergenic | 20.0% |
| !! | ATTGAATTGAAAATCTTAGA+TGG | - | chr1.4:62483012-62483031 | MS.gene004875:intron | 20.0% |
| !! | CAATATGAAAAAACGATATA+AGG | + | chr1.4:62481373-62481392 | None:intergenic | 20.0% |
| !! | CTCATGATGTTTAATATTTA+TGG | - | chr1.4:62484824-62484843 | MS.gene004875:intron | 20.0% |
| !! | GTATATATGTTCTATAACAA+GGG | + | chr1.4:62484648-62484667 | None:intergenic | 20.0% |
| !! | TAACAAATCCCTTAAAATAA+TGG | + | chr1.4:62484186-62484205 | None:intergenic | 20.0% |
| !! | TAATACAAAACTAAATGACA+AGG | + | chr1.4:62483934-62483953 | None:intergenic | 20.0% |
| !! | TATACTATTTGTATATGAGT+TGG | - | chr1.4:62481341-62481360 | MS.gene004875:intron | 20.0% |
| !! | TATATATGTTCTATAACAAG+GGG | + | chr1.4:62484647-62484666 | None:intergenic | 20.0% |
| !! | TTATACTTTGCATATGTATT+GGG | + | chr1.4:62484106-62484125 | None:intergenic | 20.0% |
| !! | TTTATACTTTGCATATGTAT+TGG | + | chr1.4:62484107-62484126 | None:intergenic | 20.0% |
| !!! | AATATTTTGTACTTAACTCA+TGG | - | chr1.4:62482817-62482836 | MS.gene004875:intron | 20.0% |
| !!! | CTTAAATATCCACTATTTTA+AGG | - | chr1.4:62484237-62484256 | MS.gene004875:intron | 20.0% |
| !!! | CTTCATATATCTTTTCTTAT+AGG | + | chr1.4:62483495-62483514 | None:intergenic | 20.0% |
| !!! | GTATTAATTTTTTTCAAGTG+TGG | - | chr1.4:62483853-62483872 | MS.gene004875:intron | 20.0% |
| !!! | TTGTTTAGTAAATGTTGTTT+TGG | + | chr1.4:62481129-62481148 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGTTGGTCTTA+AGG | + | chr1.4:62482990-62483009 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCTATCTTCTTAT+TGG | + | chr1.4:62481278-62481297 | None:intergenic | 20.0% |
| ! | AAACTACAATAGTATATAGG+TGG | + | chr1.4:62483636-62483655 | None:intergenic | 25.0% |
| ! | AGCATGACATAGAATAAATA+TGG | - | chr1.4:62485045-62485064 | MS.gene004875:intron | 25.0% |
| ! | ATATTTGTACAACTGTTCTA+TGG | - | chr1.4:62481173-62481192 | MS.gene004875:intron | 25.0% |
| ! | ATCAAAATTACAAGCATTTG+TGG | + | chr1.4:62481556-62481575 | None:intergenic | 25.0% |
| ! | ATCAAATTCGCATTAATTAC+TGG | - | chr1.4:62483953-62483972 | MS.gene004875:intron | 25.0% |
| ! | CCAAACATCATTCATAATAT+TGG | - | chr1.4:62484680-62484699 | MS.gene004875:CDS | 25.0% |
| ! | CCAATATTATGAATGATGTT+TGG | + | chr1.4:62484683-62484702 | None:intergenic | 25.0% |
| ! | GCAAAGTATAAAAGAATTCT+TGG | - | chr1.4:62484115-62484134 | MS.gene004875:intron | 25.0% |
| ! | GGCTATTTATTCTAACTTAT+TGG | - | chr1.4:62483350-62483369 | MS.gene004875:intron | 25.0% |
| ! | GGTATATATGTTCTATAACA+AGG | + | chr1.4:62484649-62484668 | None:intergenic | 25.0% |
| ! | GTAATTTCAAGGAAATGTAT+AGG | - | chr1.4:62485261-62485280 | MS.gene004875:intron | 25.0% |
| ! | GTATAAAAGAATTCTTGGAT+CGG | - | chr1.4:62484120-62484139 | MS.gene004875:intron | 25.0% |
| ! | TAGTACTAATTAATTACCAG+TGG | + | chr1.4:62482000-62482019 | None:intergenic | 25.0% |
| ! | TCAAAATTACAAGCATTTGT+GGG | + | chr1.4:62481555-62481574 | None:intergenic | 25.0% |
| ! | TTTCCTTTAAACCTTTGATT+TGG | + | chr1.4:62485106-62485125 | None:intergenic | 25.0% |
| !! | GTACATATATATGTTTGTTG+GGG | + | chr1.4:62482633-62482652 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTTGTTGTGATGA+TGG | + | chr1.4:62482222-62482241 | None:intergenic | 25.0% |
| !!! | ATAAAGGGTGTCTAAATATA+AGG | + | chr1.4:62484712-62484731 | None:intergenic | 25.0% |
| !!! | ATTTTAGCCTAAACAAGTAT+CGG | - | chr1.4:62484883-62484902 | MS.gene004875:intron | 25.0% |
| !!! | ATTTTTTGAAGGATGTTTGT+TGG | - | chr1.4:62482712-62482731 | MS.gene004875:intron | 25.0% |
| !!! | TATAAGGTTTTAGATCTTGA+AGG | - | chr1.4:62482259-62482278 | MS.gene004875:intron | 25.0% |
| !!! | TTATGCAATTTTTTAAGCCT+TGG | - | chr1.4:62481684-62481703 | MS.gene004875:intron | 25.0% |
| !!! | TTTTTTCCTATCTTCCATTT+GGG | + | chr1.4:62481449-62481468 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTATCTTCCATT+TGG | + | chr1.4:62481450-62481469 | None:intergenic | 25.0% |
| AAAATAATCAATGTCTCAGC+TGG | - | chr1.4:62483819-62483838 | MS.gene004875:intron | 30.0% | |
| AAGAAAGAAAAAGGGATAAG+AGG | + | chr1.4:62485315-62485334 | None:intergenic | 30.0% | |
| AAGAGAGTGATGTGATAAAT+TGG | + | chr1.4:62484793-62484812 | None:intergenic | 30.0% | |
| AAGCATGCAAGTACTTTAAT+TGG | + | chr1.4:62481042-62481061 | None:intergenic | 30.0% | |
| ACAAAAGGTTAACAATACTG+AGG | - | chr1.4:62481824-62481843 | MS.gene004875:intron | 30.0% | |
| ACATTTCCTTGAAATTACGT+GGG | + | chr1.4:62485259-62485278 | None:intergenic | 30.0% | |
| ACTTTATGACGTTGGATTTA+TGG | + | chr1.4:62484388-62484407 | None:intergenic | 30.0% | |
| AGCATGCAAGTACTTTAATT+GGG | + | chr1.4:62481041-62481060 | None:intergenic | 30.0% | |
| ATTTAGACCAAAATCAGCTT+CGG | + | chr1.4:62483429-62483448 | None:intergenic | 30.0% | |
| CAACCAAATCAAAGGTTTAA+AGG | - | chr1.4:62485100-62485119 | MS.gene004875:intron | 30.0% | |
| CACATCCATGAAATTAACAT+TGG | - | chr1.4:62482681-62482700 | MS.gene004875:intron | 30.0% | |
| CTAAATGACAAGGACTATAA+TGG | + | chr1.4:62483924-62483943 | None:intergenic | 30.0% | |
| CTATAACAAATAGCTAGGTA+TGG | + | chr1.4:62482165-62482184 | None:intergenic | 30.0% | |
| GAATTAGAAGTCGTTTGAAA+CGG | - | chr1.4:62484331-62484350 | MS.gene004875:intron | 30.0% | |
| GGCAAACTACAATAGTATAT+AGG | + | chr1.4:62483639-62483658 | None:intergenic | 30.0% | |
| TAATTAATTACCAGTGGTGA+AGG | + | chr1.4:62481994-62482013 | None:intergenic | 30.0% | |
| TACATTTCCTTGAAATTACG+TGG | + | chr1.4:62485260-62485279 | None:intergenic | 30.0% | |
| TATATCAGAACATATATGGG+AGG | + | chr1.4:62484290-62484309 | None:intergenic | 30.0% | |
| TATGCAAAACTTTATGACGT+TGG | + | chr1.4:62484396-62484415 | None:intergenic | 30.0% | |
| TATTCTATGTCATGCTCATA+TGG | + | chr1.4:62485041-62485060 | None:intergenic | 30.0% | |
| TGATCAGATTTAAGTACAAG+TGG | - | chr1.4:62485185-62485204 | MS.gene004875:intron | 30.0% | |
| TGATGTTTGGATCTTATGAA+AGG | + | chr1.4:62484670-62484689 | None:intergenic | 30.0% | |
| TGATTGTAGTATATAGTAGC+TGG | + | chr1.4:62482579-62482598 | None:intergenic | 30.0% | |
| TTATTCCACAGAGATTAAGT+TGG | + | chr1.4:62485342-62485361 | None:intergenic | 30.0% | |
| TTCATGGATGTGTAAATATG+TGG | + | chr1.4:62482673-62482692 | None:intergenic | 30.0% | |
| TTCCTAATCCCTTAAAATAG+TGG | + | chr1.4:62484249-62484268 | None:intergenic | 30.0% | |
| TTGAACACCTTATAAGTAAG+AGG | - | chr1.4:62485419-62485438 | MS.gene004875:intron | 30.0% | |
| TTGGAGCAAAGAAAGAAAAA+GGG | + | chr1.4:62485323-62485342 | None:intergenic | 30.0% | |
| ! | AAAGTACTCTTCATGGTTAA+AGG | - | chr1.4:62484544-62484563 | MS.gene004875:CDS | 30.0% |
| ! | CAATTATTCTTTTCTCTCCA+AGG | + | chr1.4:62481704-62481723 | None:intergenic | 30.0% |
| ! | TGGATATTTCATCTAAAGCT+AGG | + | chr1.4:62484166-62484185 | None:intergenic | 30.0% |
| ! | TGGTCTTAAGGATTAAGTTT+AGG | + | chr1.4:62482978-62482997 | None:intergenic | 30.0% |
| !! | ACTATTTTAAGGGATTAGGA+AGG | - | chr1.4:62484248-62484267 | MS.gene004875:intron | 30.0% |
| !! | ATCCACTATTTTAAGGGATT+AGG | - | chr1.4:62484244-62484263 | MS.gene004875:intron | 30.0% |
| !!! | AATTTTTTTCAAGTGTGGGA+AGG | - | chr1.4:62483858-62483877 | MS.gene004875:intron | 30.0% |
| !!! | ATTTTTTTCAAGTGTGGGAA+GGG | - | chr1.4:62483859-62483878 | MS.gene004875:intron | 30.0% |
| !!! | TTAACCATGAAGAGTACTTT+TGG | + | chr1.4:62484544-62484563 | None:intergenic | 30.0% |
| AAACTAACACTCCAATCAAC+AGG | + | chr1.4:62483523-62483542 | None:intergenic | 35.0% | |
| AATAGCTAGGTATGGACTTT+AGG | + | chr1.4:62482157-62482176 | None:intergenic | 35.0% | |
| AATCAACCCACGTAATTTCA+AGG | - | chr1.4:62485250-62485269 | MS.gene004875:intron | 35.0% | |
| AGAGAGAGAAAAAAGAAGAG+AGG | + | chr1.4:62481243-62481262 | None:intergenic | 35.0% | |
| ATGAAAGGATCAGAAGCTAT+TGG | - | chr1.4:62482757-62482776 | MS.gene004875:intron | 35.0% | |
| ATTAATTACTGGACGAGTGT+AGG | - | chr1.4:62483964-62483983 | MS.gene004875:intron | 35.0% | |
| ATTGGGAAAACTTACTTAGC+TGG | + | chr1.4:62481024-62481043 | None:intergenic | 35.0% | |
| CATGAAGTCTATCATTCCTT+GGG | + | chr1.4:62482423-62482442 | None:intergenic | 35.0% | |
| CTTAATGCCGATACTTGTTT+AGG | + | chr1.4:62484893-62484912 | None:intergenic | 35.0% | |
| GAAGCTTAATCTTCAAACCA+AGG | - | chr1.4:62480936-62480955 | MS.gene004875:CDS | 35.0% | |
| GGCATCAGATAAATCTTTGT+AGG | + | chr1.4:62481952-62481971 | None:intergenic | 35.0% | |
| GTTGGAGCAAAGAAAGAAAA+AGG | + | chr1.4:62485324-62485343 | None:intergenic | 35.0% | |
| TAGTATATAGTAGCTGGAGA+TGG | + | chr1.4:62482573-62482592 | None:intergenic | 35.0% | |
| TATGGATTCTCAAACCCAAA+TGG | - | chr1.4:62481432-62481451 | MS.gene004875:intron | 35.0% | |
| TATGGGTCCTCTTACTTATA+AGG | + | chr1.4:62485429-62485448 | None:intergenic | 35.0% | |
| TCATGAAGTCTATCATTCCT+TGG | + | chr1.4:62482424-62482443 | None:intergenic | 35.0% | |
| TGAAAGGATCAGAAGCTATT+GGG | - | chr1.4:62482758-62482777 | MS.gene004875:intron | 35.0% | |
| TGATGTCCAATTCACTAATG+TGG | - | chr1.4:62484424-62484443 | MS.gene004875:intron | 35.0% | |
| TGCATCAAGTATAATGCAAG+TGG | + | chr1.4:62482926-62482945 | None:intergenic | 35.0% | |
| TGGATGTGTAAATATGTGGT+TGG | + | chr1.4:62482669-62482688 | None:intergenic | 35.0% | |
| TTAATTACTGGACGAGTGTA+GGG | - | chr1.4:62483965-62483984 | MS.gene004875:intron | 35.0% | |
| TTTACTCTTCTATCCGATGT+GGG | + | chr1.4:62485397-62485416 | None:intergenic | 35.0% | |
| TTTAGATCTTGAAGGATGCA+TGG | - | chr1.4:62482267-62482286 | MS.gene004875:intron | 35.0% | |
| TTTGTTAAGGTTTCCATGGA+TGG | - | chr1.4:62481885-62481904 | MS.gene004875:intron | 35.0% | |
| ! | AGCATTCTGTCTAGTTTAGA+TGG | + | chr1.4:62482081-62482100 | None:intergenic | 35.0% |
| ! | CATTCTGTCTAGTTTAGATG+GGG | + | chr1.4:62482079-62482098 | None:intergenic | 35.0% |
| ! | CTTTTCTTATAGGTCCACTT+TGG | + | chr1.4:62483485-62483504 | None:intergenic | 35.0% |
| ! | GCATTCTGTCTAGTTTAGAT+GGG | + | chr1.4:62482080-62482099 | None:intergenic | 35.0% |
| ! | TAACTCATGGAAGTATGCTT+TGG | - | chr1.4:62482830-62482849 | MS.gene004875:intron | 35.0% |
| ! | TGCATTTGTTAAGGTTTCCA+TGG | - | chr1.4:62481881-62481900 | MS.gene004875:intron | 35.0% |
| ! | TGTTGATGGAGTTTCGTTTA+TGG | - | chr1.4:62483898-62483917 | MS.gene004875:intron | 35.0% |
| ! | TGTTGATTGGAGTGTTAGTT+TGG | - | chr1.4:62483522-62483541 | MS.gene004875:intron | 35.0% |
| ! | TTAAGTCTGATGGAGTATCA+TGG | - | chr1.4:62484908-62484927 | MS.gene004875:intron | 35.0% |
| AAACTCCATCAACATGCACA+TGG | + | chr1.4:62483892-62483911 | None:intergenic | 40.0% | |
| AAGTCAACCTTACGAAGGTA+AGG | + | chr1.4:62481915-62481934 | None:intergenic | 40.0% | |
| ACAAAATGACACGCACACAA+GGG | + | chr1.4:62483330-62483349 | None:intergenic | 40.0% | |
| ACACAACAAACATGACAGCA+TGG | + | chr1.4:62483693-62483712 | None:intergenic | 40.0% | |
| AGAGGATACTTCTTGCATGT+AGG | + | chr1.4:62485297-62485316 | None:intergenic | 40.0% | |
| ATGATCATCGTGCTTTCTTG+TGG | - | chr1.4:62484467-62484486 | MS.gene004875:intron | 40.0% | |
| ATGTCATGCTCATATGGTAG+AGG | + | chr1.4:62485035-62485054 | None:intergenic | 40.0% | |
| CAATCGAACTTGTCGAACTT+CGG | + | chr1.4:62484511-62484530 | None:intergenic | 40.0% | |
| CACATCGGATAGAAGAGTAA+AGG | - | chr1.4:62485396-62485415 | MS.gene004875:intron | 40.0% | |
| CCAACCTATGAAGATAAGGA+TGG | - | chr1.4:62482488-62482507 | MS.gene004875:intron | 40.0% | |
| CCATCCTTATCTTCATAGGT+TGG | + | chr1.4:62482491-62482510 | None:intergenic | 40.0% | |
| CTATAGGAACTTACTCCCAT+GGG | + | chr1.4:62482538-62482557 | None:intergenic | 40.0% | |
| CTCAAACCCAAATGGAAGAT+AGG | - | chr1.4:62481440-62481459 | MS.gene004875:intron | 40.0% | |
| CTTATAGGTCCACTTTGGTA+CGG | + | chr1.4:62483480-62483499 | None:intergenic | 40.0% | |
| CTTCTCATTCAGATCTTCCT+TGG | + | chr1.4:62480956-62480975 | None:intergenic | 40.0% | |
| CTTTACTCTTCTATCCGATG+TGG | + | chr1.4:62485398-62485417 | None:intergenic | 40.0% | |
| GAAGAACATGATGGCACAAA+AGG | - | chr1.4:62481809-62481828 | MS.gene004875:intron | 40.0% | |
| GAGCAACCACATTAGTGAAT+TGG | + | chr1.4:62484433-62484452 | None:intergenic | 40.0% | |
| GTCATACAGGAAGAACATGA+TGG | - | chr1.4:62481800-62481819 | MS.gene004875:intron | 40.0% | |
| GTGAGTTATATGTCCCACAT+CGG | - | chr1.4:62485381-62485400 | MS.gene004875:intron | 40.0% | |
| TATATAGTAGCTGGAGATGG+AGG | + | chr1.4:62482570-62482589 | None:intergenic | 40.0% | |
| TATTTCAGGGCTCAAGTAGT+TGG | - | chr1.4:62481762-62481781 | MS.gene004875:intron | 40.0% | |
| TCATTTGCGTTCGAACTTGT+GGG | + | chr1.4:62484994-62485013 | None:intergenic | 40.0% | |
| TGTGCCAACCTATGAAGATA+AGG | - | chr1.4:62482484-62482503 | MS.gene004875:intron | 40.0% | |
| TTATAGGTCCACTTTGGTAC+GGG | + | chr1.4:62483479-62483498 | None:intergenic | 40.0% | |
| TTGCATTTCTCCATTGCTCT+TGG | + | chr1.4:62483403-62483422 | None:intergenic | 40.0% | |
| TTGCTCCAACTTAATCTCTG+TGG | - | chr1.4:62485334-62485353 | MS.gene004875:intron | 40.0% | |
| TTGTCAAGTCAACCTTACGA+AGG | + | chr1.4:62481920-62481939 | None:intergenic | 40.0% | |
| ! | ATGAAGCACTACCTGTTGAT+TGG | - | chr1.4:62483509-62483528 | MS.gene004875:intron | 40.0% |
| ! | CATGAATGAGAGCAAGTTGA+TGG | - | chr1.4:62482439-62482458 | MS.gene004875:intron | 40.0% |
| ! | TACTGCTGCTGCATTTGTTA+AGG | - | chr1.4:62481872-62481891 | MS.gene004875:intron | 40.0% |
| ! | TTCGGCTCTGATATACTGTT+GGG | + | chr1.4:62484493-62484512 | None:intergenic | 40.0% |
| !! | AGTATCGGCATTAAGTCTGA+TGG | - | chr1.4:62484898-62484917 | MS.gene004875:intron | 40.0% |
| !! | CTTCATGGTTAAAGGTGTTC+AGG | - | chr1.4:62484552-62484571 | MS.gene004875:CDS | 40.0% |
| !! | GAATGAGAAGAGTGCTTCAA+AGG | - | chr1.4:62480966-62480985 | MS.gene004875:CDS | 40.0% |
| !! | GCAAAAACCGAAGCTGATTT+TGG | - | chr1.4:62483419-62483438 | MS.gene004875:intron | 40.0% |
| !! | TGTGCCAAAAGTACTCTTCA+TGG | - | chr1.4:62484537-62484556 | MS.gene004875:CDS | 40.0% |
| AAAATGACACGCACACAAGG+GGG | + | chr1.4:62483328-62483347 | None:intergenic | 45.0% | |
| AAAGGAGAAGACCCTCCTTA+AGG | - | chr1.4:62480984-62481003 | MS.gene004875:CDS | 45.0% | |
| AACGACGGTACAAGTAGTGT+CGG | - | chr1.4:62485561-62485580 | MS.gene004875:CDS | 45.0% | |
| AAGCGTCTGCGCATAATGAA+AGG | - | chr1.4:62482742-62482761 | MS.gene004875:intron | 45.0% | |
| ATCAATGTCTCAGCTGGATG+AGG | - | chr1.4:62483825-62483844 | MS.gene004875:intron | 45.0% | |
| ATGAAGATAAGGATGGCGAC+TGG | - | chr1.4:62482495-62482514 | MS.gene004875:intron | 45.0% | |
| ATGGAGGTTGGATGAGCTAT+AGG | + | chr1.4:62482554-62482573 | None:intergenic | 45.0% | |
| CAAAATGACACGCACACAAG+GGG | + | chr1.4:62483329-62483348 | None:intergenic | 45.0% | |
| CACAAAATGACACGCACACA+AGG | + | chr1.4:62483331-62483350 | None:intergenic | 45.0% | |
| CAGCAACGACGATACAAACA+GGG | - | chr1.4:62485585-62485604 | MS.gene004875:CDS | 45.0% | |
| CATTTCAGCACCAAGAGCAA+TGG | - | chr1.4:62483390-62483409 | MS.gene004875:intron | 45.0% | |
| CCAGTCTGCAACCAAATCAA+AGG | - | chr1.4:62485092-62485111 | MS.gene004875:intron | 45.0% | |
| CTCATTTGCGTTCGAACTTG+TGG | + | chr1.4:62484995-62485014 | None:intergenic | 45.0% | |
| GCTATAGGAACTTACTCCCA+TGG | + | chr1.4:62482539-62482558 | None:intergenic | 45.0% | |
| GGATACTTCTTGCATGTAGG+TGG | + | chr1.4:62485294-62485313 | None:intergenic | 45.0% | |
| GGGAAAACTTACTTAGCTGG+TGG | + | chr1.4:62481021-62481040 | None:intergenic | 45.0% | |
| GTCGCCATCCTTATCTTCAT+AGG | + | chr1.4:62482495-62482514 | None:intergenic | 45.0% | |
| TCAGCAACGACGATACAAAC+AGG | - | chr1.4:62485584-62485603 | MS.gene004875:CDS | 45.0% | |
| TGGTTGCTCTTAGTTCAACG+TGG | - | chr1.4:62484444-62484463 | MS.gene004875:intron | 45.0% | |
| TTCTTCCTGTATGACCTCAC+TGG | + | chr1.4:62481795-62481814 | None:intergenic | 45.0% | |
| TTGGTACGGGACTTCGATAT+AGG | + | chr1.4:62483466-62483485 | None:intergenic | 45.0% | |
| TTGGTGAGTGAACGAATGGT+TGG | - | chr1.4:62483988-62484007 | MS.gene004875:intron | 45.0% | |
| ! | AAGGAGACTGAGCTTTGTCT+TGG | - | chr1.4:62480817-62480836 | MS.gene004875:CDS | 45.0% |
| ! | CTTCGGCTCTGATATACTGT+TGG | + | chr1.4:62484494-62484513 | None:intergenic | 45.0% |
| ! | GATTTGGTTGCAGACTGGAT+TGG | + | chr1.4:62485090-62485109 | None:intergenic | 45.0% |
| ! | GGTGAAGGAGCTGAACATTT+TGG | + | chr1.4:62481979-62481998 | None:intergenic | 45.0% |
| !! | CATGGTTAAAGGTGTTCAGG+CGG | - | chr1.4:62484555-62484574 | MS.gene004875:CDS | 45.0% |
| !! | CCTTTGATTTGGTTGCAGAC+TGG | + | chr1.4:62485095-62485114 | None:intergenic | 45.0% |
| !! | TTCTGAGGTGGAAACTCCAA+GGG | - | chr1.4:62480876-62480895 | MS.gene004875:CDS | 45.0% |
| !!! | CTTGTGTGCGTGTCATTTTG+TGG | - | chr1.4:62483329-62483348 | MS.gene004875:intron | 45.0% |
| !!! | GGAGCTGAACATTTTGGCTA+AGG | + | chr1.4:62481973-62481992 | None:intergenic | 45.0% |
| !! | AATGTATATTTATAAATAAA+GGG | + | chr1.4:62484727-62484746 | None:intergenic | 5.0% |
| !! | ATTATATTAATAATATTTCA+GGG | - | chr1.4:62481749-62481768 | MS.gene004875:intron | 5.0% |
| !! | ATTTGTAATATTTATATATA+TGG | - | chr1.4:62482043-62482062 | MS.gene004875:intron | 5.0% |
| !! | TATTATATTAATAATATTTC+AGG | - | chr1.4:62481748-62481767 | MS.gene004875:intron | 5.0% |
| AAATGACACGCACACAAGGG+GGG | + | chr1.4:62483327-62483346 | None:intergenic | 50.0% | |
| AACGCAGAAAGCAGCAACGA+CGG | - | chr1.4:62485546-62485565 | MS.gene004875:CDS | 50.0% | |
| ACTTAGCTGGTGGCTTAGCA+GGG | + | chr1.4:62481011-62481030 | None:intergenic | 50.0% | |
| AGGATGCATGGCGATTGTTG+AGG | - | chr1.4:62482279-62482298 | MS.gene004875:intron | 50.0% | |
| ATACAAACAGGGTACGACCG+AGG | - | chr1.4:62485596-62485615 | MS.gene004875:CDS | 50.0% | |
| ATAGGTAACTATGGGGCCCA+AGG | - | chr1.4:62482404-62482423 | MS.gene004875:intron | 50.0% | |
| ATCCAATGTGCACGATCCTC+GGG | - | chr1.4:62484619-62484638 | MS.gene004875:CDS | 50.0% | |
| ATCGAAGTCCCGTACCAAAG+TGG | - | chr1.4:62483468-62483487 | MS.gene004875:intron | 50.0% | |
| ATGTTCAGCTCCTTCACCAC+TGG | - | chr1.4:62481981-62482000 | MS.gene004875:intron | 50.0% | |
| CAAGGCCATGTGCATGTTGA+TGG | - | chr1.4:62483884-62483903 | MS.gene004875:intron | 50.0% | |
| CTTAGCAGGGTCCTTAAGGA+GGG | + | chr1.4:62480998-62481017 | None:intergenic | 50.0% | |
| CTTTCCGCGCAAACGGATAT+GGG | + | chr1.4:62485446-62485465 | None:intergenic | 50.0% | |
| GACAAAGCTCAGTCTCCTTC+AGG | + | chr1.4:62480816-62480835 | None:intergenic | 50.0% | |
| GATCCAATGTGCACGATCCT+CGG | - | chr1.4:62484618-62484637 | MS.gene004875:CDS | 50.0% | |
| GGATCAGAAGCTATTGGGCT+TGG | - | chr1.4:62482763-62482782 | MS.gene004875:intron | 50.0% | |
| GTACGGGACTTCGATATAGG+AGG | + | chr1.4:62483463-62483482 | None:intergenic | 50.0% | |
| GTTCAATCCATGCCCCATAG+TGG | + | chr1.4:62480794-62480813 | None:intergenic | 50.0% | |
| GTTTCTGCTTTCCGCGCAAA+CGG | + | chr1.4:62485453-62485472 | None:intergenic | 50.0% | |
| TACTTAGCTGGTGGCTTAGC+AGG | + | chr1.4:62481012-62481031 | None:intergenic | 50.0% | |
| TAGTAGCTGGAGATGGAGGT+TGG | + | chr1.4:62482566-62482585 | None:intergenic | 50.0% | |
| TCAAGTGTGGGAAGGGAACA+AGG | - | chr1.4:62483866-62483885 | MS.gene004875:intron | 50.0% | |
| TCAGGGCTCAAGTAGTTGGT+TGG | - | chr1.4:62481766-62481785 | MS.gene004875:intron | 50.0% | |
| TCTGCTTGAAGCAGCAACGA+CGG | - | chr1.4:62485689-62485708 | MS.gene004875:CDS | 50.0% | |
| TTACTGGACGAGTGTAGGGT+TGG | - | chr1.4:62483969-62483988 | MS.gene004875:intron | 50.0% | |
| TTCCTGTATGACCTCACTGG+TGG | + | chr1.4:62481792-62481811 | None:intergenic | 50.0% | |
| ! | AAGGTAAGGTGCTCCATCCA+TGG | + | chr1.4:62481901-62481920 | None:intergenic | 50.0% |
| ! | TGGAGCACCTTACCTTCGTA+AGG | - | chr1.4:62481905-62481924 | MS.gene004875:intron | 50.0% |
| !! | AGGGTTGGTGAGTGAACGAA+TGG | - | chr1.4:62483984-62484003 | MS.gene004875:intron | 50.0% |
| !! | GTTCTGAGGTGGAAACTCCA+AGG | - | chr1.4:62480875-62480894 | MS.gene004875:CDS | 50.0% |
| !! | GTTGCTGCTTTCTGCGCAAA+CGG | + | chr1.4:62485529-62485548 | None:intergenic | 50.0% |
| AGGACCCATATCCGTTTGCG+CGG | - | chr1.4:62485439-62485458 | MS.gene004875:intron | 55.0% | |
| CGACGGTAGGTATCAAAGCC+CGG | - | chr1.4:62485472-62485491 | MS.gene004875:intron | 55.0% | |
| CGGAAAGCAGAAACGACGGT+AGG | - | chr1.4:62485459-62485478 | MS.gene004875:intron | 55.0% | |
| CTTTGTCTTGGTCTGCCTGG+TGG | - | chr1.4:62480829-62480848 | MS.gene004875:CDS | 55.0% | |
| GCTTAGCAGGGTCCTTAAGG+AGG | + | chr1.4:62480999-62481018 | None:intergenic | 55.0% | |
| GCTTTCCGCGCAAACGGATA+TGG | + | chr1.4:62485447-62485466 | None:intergenic | 55.0% | |
| GTGGCTTAGCAGGGTCCTTA+AGG | + | chr1.4:62481002-62481021 | None:intergenic | 55.0% | |
| TCTATAACAAGGGGAGCCCG+AGG | + | chr1.4:62484638-62484657 | None:intergenic | 55.0% | |
| TGCGCGGAAAGCAGAAACGA+CGG | - | chr1.4:62485455-62485474 | MS.gene004875:intron | 55.0% | |
| TGCTTTCTGCGCAAACGGAC+CGG | + | chr1.4:62485524-62485543 | None:intergenic | 55.0% | |
| ! | ATCAAAGCCCGGTTCGACGA+AGG | - | chr1.4:62485483-62485502 | MS.gene004875:intron | 55.0% |
| ! | GAGCTTTGTCTTGGTCTGCC+TGG | - | chr1.4:62480826-62480845 | MS.gene004875:CDS | 55.0% |
| ! | GGGGCATGGATTGAACCTGA+AGG | - | chr1.4:62480798-62480817 | MS.gene004875:CDS | 55.0% |
| ! | TAGTTGGTTGGCCACCAGTG+AGG | - | chr1.4:62481778-62481797 | MS.gene004875:intron | 55.0% |
| ! | TCAAAGCCCGGTTCGACGAA+GGG | - | chr1.4:62485484-62485503 | MS.gene004875:intron | 55.0% |
| AGCCCGAGGATCGTGCACAT+TGG | + | chr1.4:62484624-62484643 | None:intergenic | 60.0% | |
| CCAAGGGCTTCTGCGAAGAG+AGG | - | chr1.4:62480892-62480911 | MS.gene004875:CDS | 60.0% | |
| CCTCTCTTCGCAGAAGCCCT+TGG | + | chr1.4:62480895-62480914 | None:intergenic | 60.0% | |
| GATGGCGACTGGATGCTCGT+GGG | - | chr1.4:62482506-62482525 | MS.gene004875:intron | 60.0% | |
| GCACACAAGGGGGGACTCAA+GGG | + | chr1.4:62483318-62483337 | None:intergenic | 60.0% | |
| GCTCGTGGGAGATGTCCCAT+GGG | - | chr1.4:62482520-62482539 | MS.gene004875:intron | 60.0% | |
| GGCCACCAGTGAGGTCATAC+AGG | - | chr1.4:62481787-62481806 | MS.gene004875:intron | 60.0% | |
| GGTCGTACCCTTCGTCGAAC+CGG | + | chr1.4:62485494-62485513 | None:intergenic | 60.0% | |
| GTCGTACCCTTCGTCGAACC+GGG | + | chr1.4:62485493-62485512 | None:intergenic | 60.0% | |
| TGCTCGTGGGAGATGTCCCA+TGG | - | chr1.4:62482519-62482538 | MS.gene004875:intron | 60.0% | |
| TGTCTTGGTCTGCCTGGTGG+TGG | - | chr1.4:62480832-62480851 | MS.gene004875:CDS | 60.0% | |
| ! | TTCGACGAAGGGTACGACCG+AGG | - | chr1.4:62485495-62485514 | MS.gene004875:intron | 60.0% |
| CGCACACAAGGGGGGACTCA+AGG | + | chr1.4:62483319-62483338 | None:intergenic | 65.0% | |
| GGATGGCGACTGGATGCTCG+TGG | - | chr1.4:62482505-62482524 | MS.gene004875:intron | 65.0% | |
| ! | AAGGGTACGACCGAGGCAGC+CGG | - | chr1.4:62485502-62485521 | MS.gene004875:intron | 65.0% |
| !! | CGGTGGAGGTGGTTCTGAGG+TGG | - | chr1.4:62480864-62480883 | MS.gene004875:CDS | 65.0% |
| !! | CTTGGTCTGCCTGGTGGTGG+TGG | - | chr1.4:62480835-62480854 | MS.gene004875:CDS | 65.0% |
| CAGGGTACGACCGAGGCAGC+CGG | - | chr1.4:62485603-62485622 | MS.gene004875:CDS | 70.0% | |
| CGCAAACGGACCGGCTGCCT+CGG | + | chr1.4:62485515-62485534 | None:intergenic | 70.0% | |
| ! | CGGCGGTGGAGGTGGTTCTG+AGG | - | chr1.4:62480861-62480880 | MS.gene004875:CDS | 70.0% |
| !! | GGTCTGCCTGGTGGTGGTGG+CGG | - | chr1.4:62480838-62480857 | MS.gene004875:CDS | 70.0% |
| !! | CTGCCTGGTGGTGGTGGCGG+CGG | - | chr1.4:62480841-62480860 | MS.gene004875:CDS | 75.0% |
| !!! | CCTGGTGGTGGTGGCGGCGG+CGG | - | chr1.4:62480844-62480863 | MS.gene004875:CDS | 80.0% |
| ! | CCGCCGCCGCCACCACCACC+AGG | + | chr1.4:62480847-62480866 | None:intergenic | 85.0% |
| !! | GGTGGCGGCGGCGGTGGAGG+TGG | - | chr1.4:62480853-62480872 | MS.gene004875:CDS | 85.0% |
| !!! | GGTGGTGGCGGCGGCGGTGG+AGG | - | chr1.4:62480850-62480869 | MS.gene004875:CDS | 85.0% |
| !!! | GGTGGTGGTGGCGGCGGCGG+TGG | - | chr1.4:62480847-62480866 | MS.gene004875:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 62480787 | 62485752 | 62480787 | ID=MS.gene004875 |
| chr1.4 | mRNA | 62480787 | 62485752 | 62480787 | ID=MS.gene004875.t1;Parent=MS.gene004875 |
| chr1.4 | exon | 62485511 | 62485752 | 62485511 | ID=MS.gene004875.t1.exon1;Parent=MS.gene004875.t1 |
| chr1.4 | CDS | 62485511 | 62485752 | 62485511 | ID=cds.MS.gene004875.t1;Parent=MS.gene004875.t1 |
| chr1.4 | exon | 62484537 | 62484769 | 62484537 | ID=MS.gene004875.t1.exon2;Parent=MS.gene004875.t1 |
| chr1.4 | CDS | 62484537 | 62484769 | 62484537 | ID=cds.MS.gene004875.t1;Parent=MS.gene004875.t1 |
| chr1.4 | exon | 62483996 | 62484131 | 62483996 | ID=MS.gene004875.t1.exon3;Parent=MS.gene004875.t1 |
| chr1.4 | CDS | 62483996 | 62484131 | 62483996 | ID=cds.MS.gene004875.t1;Parent=MS.gene004875.t1 |
| chr1.4 | exon | 62483755 | 62483816 | 62483755 | ID=MS.gene004875.t1.exon4;Parent=MS.gene004875.t1 |
| chr1.4 | CDS | 62483755 | 62483816 | 62483755 | ID=cds.MS.gene004875.t1;Parent=MS.gene004875.t1 |
| chr1.4 | exon | 62480787 | 62481070 | 62480787 | ID=MS.gene004875.t1.exon5;Parent=MS.gene004875.t1 |
| chr1.4 | CDS | 62480787 | 62481070 | 62480787 | ID=cds.MS.gene004875.t1;Parent=MS.gene004875.t1 |
| Gene Sequence |
| Protein sequence |
