Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005139.t1 | XP_013468987.1 | 98.9 | 379 | 4 | 0 | 1 | 379 | 1 | 379 | 2.90E-222 | 780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005139.t1 | Q93VR3 | 91.0 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 1.7e-207 | 723.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005139.t1 | A0A072VNM9 | 98.9 | 379 | 4 | 0 | 1 | 379 | 37 | 415 | 2.1e-222 | 780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005139 | MS.gene063165 | PPI |
| MS.gene68222 | MS.gene005139 | PPI |
| MS.gene005139 | MS.gene014281 | PPI |
| MS.gene064894 | MS.gene005139 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005139.t1 | MTR_1g080950 | 98.945 | 379 | 4 | 0 | 1 | 379 | 1 | 379 | 0.0 | 787 |
| MS.gene005139.t1 | MTR_1g080950 | 98.945 | 379 | 4 | 0 | 1 | 379 | 37 | 415 | 0.0 | 786 |
| MS.gene005139.t1 | MTR_7g115080 | 91.005 | 378 | 32 | 2 | 1 | 377 | 35 | 411 | 0.0 | 728 |
| MS.gene005139.t1 | MTR_7g115080 | 91.005 | 378 | 32 | 2 | 1 | 377 | 1 | 377 | 0.0 | 727 |
| MS.gene005139.t1 | MTR_7g115080 | 91.005 | 378 | 32 | 2 | 1 | 377 | 14 | 390 | 0.0 | 726 |
| MS.gene005139.t1 | MTR_4g120030 | 28.165 | 316 | 208 | 8 | 29 | 340 | 112 | 412 | 2.63e-28 | 115 |
| MS.gene005139.t1 | MTR_1g088480 | 27.160 | 324 | 217 | 8 | 28 | 347 | 118 | 426 | 3.34e-26 | 109 |
| MS.gene005139.t1 | MTR_4g063600 | 27.832 | 309 | 208 | 9 | 28 | 331 | 32 | 330 | 4.23e-25 | 104 |
| MS.gene005139.t1 | MTR_2g096660 | 28.662 | 314 | 199 | 11 | 28 | 331 | 38 | 336 | 6.09e-25 | 104 |
| MS.gene005139.t1 | MTR_4g063600 | 27.832 | 309 | 205 | 10 | 28 | 331 | 32 | 327 | 7.28e-24 | 101 |
| MS.gene005139.t1 | MTR_7g108490 | 24.768 | 323 | 216 | 8 | 29 | 342 | 15 | 319 | 2.72e-21 | 93.6 |
| MS.gene005139.t1 | MTR_7g108490 | 24.768 | 323 | 216 | 8 | 29 | 342 | 16 | 320 | 3.17e-21 | 93.6 |
| MS.gene005139.t1 | MTR_1g067530 | 25.074 | 339 | 210 | 9 | 26 | 329 | 110 | 439 | 8.99e-21 | 94.0 |
| MS.gene005139.t1 | MTR_4g102270 | 24.340 | 341 | 213 | 11 | 30 | 338 | 95 | 422 | 6.11e-15 | 76.3 |
| MS.gene005139.t1 | MTR_4g024600 | 24.189 | 339 | 214 | 12 | 28 | 335 | 101 | 427 | 8.60e-15 | 75.9 |
| MS.gene005139.t1 | MTR_5g011940 | 24.412 | 340 | 212 | 12 | 28 | 335 | 90 | 416 | 3.23e-14 | 73.9 |
| MS.gene005139.t1 | MTR_1g009600 | 25.688 | 327 | 217 | 14 | 26 | 337 | 3 | 318 | 5.87e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005139.t1 | AT5G28840 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| MS.gene005139.t1 | AT5G28840 | 90.981 | 377 | 34 | 0 | 1 | 377 | 1 | 377 | 0.0 | 729 |
| MS.gene005139.t1 | AT3G62830 | 27.160 | 324 | 222 | 8 | 28 | 347 | 119 | 432 | 2.48e-28 | 115 |
| MS.gene005139.t1 | AT3G62830 | 27.160 | 324 | 222 | 8 | 28 | 347 | 119 | 432 | 2.48e-28 | 115 |
| MS.gene005139.t1 | AT2G47650 | 28.247 | 308 | 207 | 8 | 28 | 331 | 121 | 418 | 4.30e-28 | 114 |
| MS.gene005139.t1 | AT3G53520 | 27.744 | 328 | 222 | 9 | 26 | 348 | 118 | 435 | 4.30e-28 | 114 |
| MS.gene005139.t1 | AT2G47650 | 27.707 | 314 | 207 | 9 | 28 | 331 | 121 | 424 | 2.17e-26 | 110 |
| MS.gene005139.t1 | AT3G53520 | 27.134 | 328 | 222 | 10 | 26 | 348 | 118 | 433 | 3.91e-25 | 106 |
| MS.gene005139.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 31 | 327 | 7.20e-25 | 104 |
| MS.gene005139.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 31 | 327 | 7.20e-25 | 104 |
| MS.gene005139.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 31 | 327 | 7.20e-25 | 104 |
| MS.gene005139.t1 | AT3G46440 | 27.653 | 311 | 202 | 10 | 28 | 329 | 29 | 325 | 8.36e-25 | 103 |
| MS.gene005139.t1 | AT3G46440 | 27.653 | 311 | 202 | 10 | 28 | 329 | 29 | 325 | 8.36e-25 | 103 |
| MS.gene005139.t1 | AT2G28760 | 28.013 | 307 | 206 | 9 | 28 | 329 | 62 | 358 | 2.08e-24 | 103 |
| MS.gene005139.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 1 | 297 | 4.77e-24 | 101 |
| MS.gene005139.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 30 | 326 | 7.18e-24 | 101 |
| MS.gene005139.t1 | AT1G73250 | 25.714 | 315 | 209 | 7 | 29 | 335 | 18 | 315 | 7.37e-24 | 100 |
| MS.gene005139.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 45 | 341 | 9.35e-24 | 101 |
| MS.gene005139.t1 | AT5G59290 | 27.010 | 311 | 204 | 10 | 28 | 329 | 23 | 319 | 1.49e-23 | 100 |
| MS.gene005139.t1 | AT3G53520 | 25.779 | 353 | 220 | 11 | 26 | 348 | 118 | 458 | 2.25e-23 | 101 |
| MS.gene005139.t1 | AT1G17890 | 25.231 | 325 | 216 | 8 | 29 | 344 | 21 | 327 | 2.96e-23 | 99.4 |
| MS.gene005139.t1 | AT1G17890 | 25.231 | 325 | 216 | 8 | 29 | 344 | 13 | 319 | 3.14e-23 | 99.4 |
| MS.gene005139.t1 | AT1G17890 | 25.231 | 325 | 216 | 8 | 29 | 344 | 13 | 319 | 3.14e-23 | 99.4 |
| MS.gene005139.t1 | AT2G45310 | 26.100 | 341 | 205 | 14 | 28 | 335 | 97 | 423 | 8.71e-18 | 84.7 |
| MS.gene005139.t1 | AT3G23820 | 24.793 | 363 | 220 | 14 | 28 | 351 | 112 | 460 | 3.59e-16 | 80.1 |
| MS.gene005139.t1 | AT4G00110 | 24.706 | 340 | 211 | 13 | 28 | 335 | 91 | 417 | 4.04e-15 | 77.0 |
| MS.gene005139.t1 | AT1G02000 | 23.824 | 340 | 214 | 12 | 28 | 335 | 92 | 418 | 6.08e-14 | 73.2 |
| MS.gene005139.t1 | AT4G30440 | 23.754 | 341 | 213 | 12 | 28 | 335 | 88 | 414 | 1.15e-12 | 69.3 |
| MS.gene005139.t1 | AT1G53500 | 24.771 | 327 | 220 | 13 | 30 | 341 | 11 | 326 | 1.44e-12 | 69.7 |
Find 102 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGCTGCTAGGATTAA+TGG | 0.256067 | 1.1:+60239029 | MS.gene005139:CDS |
| CATAACATATATGGTCCTTT+TGG | 0.258635 | 1.1:+60239474 | MS.gene005139:CDS |
| CTGCCCGAAGTGAGCCTAAT+TGG | 0.271744 | 1.1:-60240686 | None:intergenic |
| TTCCGCGAGCCGGTAAATAT+TGG | 0.274622 | 1.1:+60240162 | MS.gene005139:CDS |
| GTTTCTAACTGTTTAAATTC+AGG | 0.285374 | 1.1:-60239214 | None:intergenic |
| ATCTTGAGAGAGAGCCTTAC+TGG | 0.304697 | 1.1:+60238697 | MS.gene005139:CDS |
| TTTCAATCTTGCCGCTGATA+TGG | 0.324249 | 1.1:+60238935 | MS.gene005139:CDS |
| GAGATGGCTGAGATCGTTCT+TGG | 0.352457 | 1.1:+60240210 | MS.gene005139:CDS |
| TATACCTTCAACTTCATTGT+TGG | 0.357453 | 1.1:-60240336 | None:intergenic |
| GCCTAATTGGACCGGTGCTT+GGG | 0.360185 | 1.1:-60240673 | None:intergenic |
| AATTCCATCTTGTTGATCTC+AGG | 0.363929 | 1.1:+60238868 | MS.gene005139:CDS |
| AAAATTTCCATCACTGGTGC+TGG | 0.368034 | 1.1:+60238735 | MS.gene005139:CDS |
| ATTTACCGGCTCGCGGAAAT+CGG | 0.371961 | 1.1:-60240157 | None:intergenic |
| CAAAAGGACCATATATGTTA+TGG | 0.374113 | 1.1:-60239473 | None:intergenic |
| AAGCACTACAACAAAGATTT+CGG | 0.376422 | 1.1:+60239426 | MS.gene005139:CDS |
| TCATCACTTCCAATATTTAC+CGG | 0.378878 | 1.1:-60240171 | None:intergenic |
| AGCCTAATTGGACCGGTGCT+TGG | 0.382304 | 1.1:-60240674 | None:intergenic |
| TTCAATCTTGCCGCTGATAT+GGG | 0.385962 | 1.1:+60238936 | MS.gene005139:CDS |
| GATTACATATGTCTGGATTA+AGG | 0.386996 | 1.1:+60240581 | MS.gene005139:CDS |
| GGTCTTGATACATCAGGATA+TGG | 0.392584 | 1.1:+60240630 | MS.gene005139:CDS |
| GGGAGGTTCCATAACATATA+TGG | 0.396979 | 1.1:+60239465 | MS.gene005139:CDS |
| ACTGCTTAACGGTTACTAAA+GGG | 0.409840 | 1.1:+60238901 | MS.gene005139:CDS |
| AACTACTAATGTCAGCTTGA+AGG | 0.417690 | 1.1:+60239234 | MS.gene005139:CDS |
| TTTCTAACTGTTTAAATTCA+GGG | 0.425655 | 1.1:-60239213 | None:intergenic |
| GGCTGAGGATTACATATGTC+TGG | 0.425884 | 1.1:+60240574 | MS.gene005139:CDS |
| GGGCCAGGAATGTGATGTAT+AGG | 0.440229 | 1.1:-60240252 | None:intergenic |
| AAGCTTAAAATTTCCATCAC+TGG | 0.443314 | 1.1:+60238729 | MS.gene005139:CDS |
| ATACATAATAACAGAATGAT+TGG | 0.454190 | 1.1:-60238979 | None:intergenic |
| TTCGGAATTGAGTGCCGCAT+TGG | 0.455787 | 1.1:+60239444 | MS.gene005139:CDS |
| TTCATTGATGAGTGTGTTGA+AGG | 0.460492 | 1.1:+60239729 | MS.gene005139:CDS |
| TTACGACCACGAACACCCTC+TGG | 0.466075 | 1.1:-60240273 | None:intergenic |
| CCACGAACACCCTCTGGGCC+AGG | 0.469580 | 1.1:-60240267 | None:intergenic |
| GGTCCAATTAGGCTCACTTC+GGG | 0.470769 | 1.1:+60240683 | MS.gene005139:CDS |
| TCGGAATTGAGTGCCGCATT+GGG | 0.470875 | 1.1:+60239445 | MS.gene005139:CDS |
| CTCTCTCTCAAGATTCTCAT+AGG | 0.472504 | 1.1:-60238688 | None:intergenic |
| TTCTGCAGGATGGGAAGTAC+TGG | 0.475790 | 1.1:+60238642 | None:intergenic |
| ACTCCTATACATCACATTCC+TGG | 0.476449 | 1.1:+60240249 | MS.gene005139:CDS |
| ACCCAAGCACCGGTCCAATT+AGG | 0.477394 | 1.1:+60240672 | MS.gene005139:CDS |
| AAATTTCCATCACTGGTGCT+GGG | 0.477839 | 1.1:+60238736 | MS.gene005139:CDS |
| AACTGCTTAACGGTTACTAA+AGG | 0.478063 | 1.1:+60238900 | MS.gene005139:CDS |
| CTAGGATTAATGGAATTAAG+AGG | 0.478585 | 1.1:+60239039 | MS.gene005139:CDS |
| GCCGCTGATATGGGTGGAAT+GGG | 0.482360 | 1.1:+60238945 | MS.gene005139:CDS |
| CCTGGCCCAGAGGGTGTTCG+TGG | 0.486762 | 1.1:+60240267 | MS.gene005139:CDS |
| AAATTTGAGATGTGGGGAGA+TGG | 0.493691 | 1.1:+60239684 | MS.gene005139:CDS |
| TGCCGCTGATATGGGTGGAA+TGG | 0.494921 | 1.1:+60238944 | MS.gene005139:CDS |
| GGTCATGGATAACTGCTTAA+CGG | 0.498357 | 1.1:+60238890 | MS.gene005139:CDS |
| TAAATCCGATTTCCGCGAGC+CGG | 0.501210 | 1.1:+60240152 | MS.gene005139:CDS |
| TACAGACAAATTTGAGATGT+GGG | 0.508195 | 1.1:+60239677 | MS.gene005139:CDS |
| GGCTCCAACAATGAAGTTGA+AGG | 0.508928 | 1.1:+60240332 | MS.gene005139:CDS |
| ATTACATTATTGCTTCTGAC+TGG | 0.512162 | 1.1:+60238805 | MS.gene005139:CDS |
| GATTAAGGAACAACTTGAAA+GGG | 0.521122 | 1.1:+60240596 | MS.gene005139:CDS |
| CGGTCCAATTAGGCTCACTT+CGG | 0.527001 | 1.1:+60240682 | MS.gene005139:CDS |
| GCTCAAGGTCTTGATACATC+AGG | 0.527626 | 1.1:+60240624 | MS.gene005139:CDS |
| ATACCTTTCCATGTTCCAAA+AGG | 0.529802 | 1.1:-60239489 | None:intergenic |
| AATCGCGAACAAACCTCAGC+AGG | 0.536092 | 1.1:-60239271 | None:intergenic |
| TAATAAAAGAGAAACTTGGC+TGG | 0.537272 | 1.1:+60240310 | MS.gene005139:CDS |
| TGCTTTGTCATACAGGTGGA+AGG | 0.539745 | 1.1:+60239613 | MS.gene005139:intron |
| CAGCGGCAAGATTGAAAACA+TGG | 0.540286 | 1.1:-60238929 | None:intergenic |
| AATTTCCATCACTGGTGCTG+GGG | 0.543928 | 1.1:+60238737 | MS.gene005139:CDS |
| TCTTGTTGATCTCAGGGTCA+TGG | 0.544557 | 1.1:+60238875 | MS.gene005139:CDS |
| ATTCCATCTTGTTGATCTCA+GGG | 0.549458 | 1.1:+60238869 | MS.gene005139:CDS |
| CTGCTTAACGGTTACTAAAG+GGG | 0.550109 | 1.1:+60238902 | MS.gene005139:CDS |
| TTCAACACACTCATCAATGA+AGG | 0.550166 | 1.1:-60239727 | None:intergenic |
| GTTTAGCCACAAGATGCGTA+TGG | 0.550376 | 1.1:+60239372 | MS.gene005139:intron |
| CTTAGCGCGGCGTCTCAAGA+AGG | 0.553238 | 1.1:+60238776 | MS.gene005139:CDS |
| GGCTCACTTCGGGCAGCAGA+CGG | 0.553347 | 1.1:+60240693 | MS.gene005139:CDS |
| TCAATATGATTGAAGCTGCT+AGG | 0.554345 | 1.1:+60239021 | MS.gene005139:CDS |
| CGAAGTGAGCCTAATTGGAC+CGG | 0.556358 | 1.1:-60240681 | None:intergenic |
| TGGTATTGTAGGATGGGCTG+AGG | 0.562487 | 1.1:+60240559 | MS.gene005139:intron |
| TCATACAGGTGGAAGGGAGA+AGG | 0.564053 | 1.1:+60239620 | MS.gene005139:intron |
| GGATTAAGGAACAACTTGAA+AGG | 0.565415 | 1.1:+60240595 | MS.gene005139:CDS |
| GTCTGATGCATGGCCTGCTG+AGG | 0.565899 | 1.1:+60239258 | MS.gene005139:CDS |
| ATTTCCATCACTGGTGCTGG+GGG | 0.574182 | 1.1:+60238738 | MS.gene005139:CDS |
| CTTGAAAGGGAGAAGGCTCA+AGG | 0.580968 | 1.1:+60240609 | MS.gene005139:CDS |
| GCTAGAGAAGCTTGCAACAG+AGG | 0.582464 | 1.1:+60239395 | MS.gene005139:CDS |
| GAATTGAGTGCCGCATTGGG+AGG | 0.584070 | 1.1:+60239448 | MS.gene005139:CDS |
| ACACTAATAAAAGAGAAACT+TGG | 0.584612 | 1.1:+60240306 | MS.gene005139:CDS |
| AGGATATGGCTCATCAAAAG+TGG | 0.585626 | 1.1:+60240644 | MS.gene005139:CDS |
| AGTGTGTTGAAGGTGTACTT+AGG | 0.590072 | 1.1:+60239739 | MS.gene005139:CDS |
| TTATCGCGTCGCACTTAGCG+CGG | 0.590377 | 1.1:+60238763 | MS.gene005139:CDS |
| AATCTTGCCGCTGATATGGG+TGG | 0.591075 | 1.1:+60238939 | MS.gene005139:CDS |
| AGCGCGGCGTCTCAAGAAGG+AGG | 0.592364 | 1.1:+60238779 | MS.gene005139:CDS |
| CATCACATTCCTGGCCCAGA+GGG | 0.594287 | 1.1:+60240258 | MS.gene005139:CDS |
| TTCCAATATTTACCGGCTCG+CGG | 0.595261 | 1.1:-60240164 | None:intergenic |
| TGACCCTGAGATCAACAAGA+TGG | 0.595396 | 1.1:-60238872 | None:intergenic |
| TTTAGCCACAAGATGCGTAT+GGG | 0.596572 | 1.1:+60239373 | MS.gene005139:intron |
| CTACAGACAAATTTGAGATG+TGG | 0.598727 | 1.1:+60239676 | MS.gene005139:CDS |
| AATAAAAGAGAAACTTGGCT+GGG | 0.602593 | 1.1:+60240311 | MS.gene005139:CDS |
| GCTTTGTCATACAGGTGGAA+GGG | 0.602719 | 1.1:+60239614 | MS.gene005139:intron |
| TACGACCACGAACACCCTCT+GGG | 0.602751 | 1.1:-60240272 | None:intergenic |
| AGTGGTGCAAACCCAAGCAC+CGG | 0.611968 | 1.1:+60240662 | MS.gene005139:CDS |
| AAATATTGGAAGTGATGAGA+TGG | 0.614662 | 1.1:+60240176 | MS.gene005139:CDS |
| TCTAGCCCATACGCATCTTG+TGG | 0.616959 | 1.1:-60239378 | None:intergenic |
| GGAACAACTTGAAAGGGAGA+AGG | 0.619660 | 1.1:+60240602 | MS.gene005139:CDS |
| GCTTGAAGGAGTCTGATGCA+TGG | 0.646402 | 1.1:+60239248 | MS.gene005139:CDS |
| ACCCATTCCACCCATATCAG+CGG | 0.650854 | 1.1:-60238946 | None:intergenic |
| GCGCGGCGTCTCAAGAAGGA+GGG | 0.659404 | 1.1:+60238780 | MS.gene005139:CDS |
| ACAGACAAATTTGAGATGTG+GGG | 0.667327 | 1.1:+60239678 | MS.gene005139:CDS |
| ACATCACATTCCTGGCCCAG+AGG | 0.671457 | 1.1:+60240257 | MS.gene005139:CDS |
| AGGGTAGATACAAGCACTTG+AGG | 0.678133 | 1.1:-60239194 | None:intergenic |
| GATGGTCAGCATGAATGAGA+TGG | 0.684833 | 1.1:+60240194 | MS.gene005139:CDS |
| TGTTATGGAACCTCCCAATG+CGG | 0.724863 | 1.1:-60239458 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAAGTTTTTATCCAATT+TGG | + | chr1.1:60240388-60240407 | MS.gene005139:intron | 15.0% |
| !!! | TTAGTAGATGTTTTTAATTT+TGG | + | chr1.1:60239564-60239583 | MS.gene005139:intron | 15.0% |
| !!! | TTTATTTTTACATTAAGCTT+GGG | + | chr1.1:60239323-60239342 | MS.gene005139:intron | 15.0% |
| !! | ATACATAATAACAGAATGAT+TGG | - | chr1.1:60238982-60239001 | None:intergenic | 20.0% |
| !! | ATTCATTAAAGTCAAACAAT+AGG | - | chr1.1:60240497-60240516 | None:intergenic | 20.0% |
| !! | CAAAATCACTAATATTTGTT+CGG | - | chr1.1:60239100-60239119 | None:intergenic | 20.0% |
| !! | GACTTTAATGAATATTCAAA+GGG | + | chr1.1:60240504-60240523 | MS.gene005139:intron | 20.0% |
| !! | TGACTTTAATGAATATTCAA+AGG | + | chr1.1:60240503-60240522 | MS.gene005139:intron | 20.0% |
| !! | TTTCTAACTGTTTAAATTCA+GGG | - | chr1.1:60239216-60239235 | None:intergenic | 20.0% |
| !!! | ATAATTTTAGTATCCGTAAT+TGG | + | chr1.1:60240019-60240038 | MS.gene005139:intron | 20.0% |
| !!! | CTTTATTTTTACATTAAGCT+TGG | + | chr1.1:60239322-60239341 | MS.gene005139:intron | 20.0% |
| !!! | GAATTATAATTTTGAGCTTA+TGG | + | chr1.1:60239834-60239853 | MS.gene005139:intron | 20.0% |
| ! | AAAAAACACATGAATAAAGC+TGG | - | chr1.1:60239797-60239816 | None:intergenic | 25.0% |
| ! | ACACTAATAAAAGAGAAACT+TGG | + | chr1.1:60240306-60240325 | MS.gene005139:CDS | 25.0% |
| ! | ACATGAAAAGTTTGGTTAAA+TGG | - | chr1.1:60239884-60239903 | None:intergenic | 25.0% |
| ! | ACTAATATTTGTTCGGTTAT+AGG | - | chr1.1:60239093-60239112 | None:intergenic | 25.0% |
| ! | GTTTCTAACTGTTTAAATTC+AGG | - | chr1.1:60239217-60239236 | None:intergenic | 25.0% |
| ! | TATCTAAATTCTGGTATTGT+AGG | + | chr1.1:60240548-60240567 | MS.gene005139:intron | 25.0% |
| ! | TTAAAGTCAAACAATAGGAA+AGG | - | chr1.1:60240492-60240511 | None:intergenic | 25.0% |
| ! | TTATTAAGACACAAGAAAGA+AGG | - | chr1.1:60240374-60240393 | None:intergenic | 25.0% |
| !! | AAACAAACATTTTTCGCAAT+TGG | - | chr1.1:60239158-60239177 | None:intergenic | 25.0% |
| !! | GAAATTTTAAGCTTTTCTGA+TGG | - | chr1.1:60238723-60238742 | None:intergenic | 25.0% |
| !!! | CATCTACTAATTTGCTTATT+CGG | - | chr1.1:60239554-60239573 | None:intergenic | 25.0% |
| !!! | GAAAGTGTAATGGAATTTTT+AGG | + | chr1.1:60240429-60240448 | MS.gene005139:intron | 25.0% |
| AAATATTGGAAGTGATGAGA+TGG | + | chr1.1:60240176-60240195 | MS.gene005139:CDS | 30.0% | |
| AAATGCATCAAACAACCAAA+AGG | - | chr1.1:60239297-60239316 | None:intergenic | 30.0% | |
| AAATTCTGGTATTGTAGGAT+GGG | + | chr1.1:60240553-60240572 | MS.gene005139:intron | 30.0% | |
| AAGCAACAAACTCATTACAT+CGG | - | chr1.1:60239598-60239617 | None:intergenic | 30.0% | |
| AAGCACTACAACAAAGATTT+CGG | + | chr1.1:60239426-60239445 | MS.gene005139:CDS | 30.0% | |
| AAGCTTAAAATTTCCATCAC+TGG | + | chr1.1:60238729-60238748 | MS.gene005139:CDS | 30.0% | |
| AATAAAAGAGAAACTTGGCT+GGG | + | chr1.1:60240311-60240330 | MS.gene005139:CDS | 30.0% | |
| ATTACATTATTGCTTCTGAC+TGG | + | chr1.1:60238805-60238824 | MS.gene005139:CDS | 30.0% | |
| ATTGCATAAATGACATTGAG+AGG | + | chr1.1:60239981-60240000 | MS.gene005139:intron | 30.0% | |
| CAAAAGGACCATATATGTTA+TGG | - | chr1.1:60239476-60239495 | None:intergenic | 30.0% | |
| CTAGGATTAATGGAATTAAG+AGG | + | chr1.1:60239039-60239058 | MS.gene005139:CDS | 30.0% | |
| GATTAAGGAACAACTTGAAA+GGG | + | chr1.1:60240596-60240615 | MS.gene005139:CDS | 30.0% | |
| GATTACATATGTCTGGATTA+AGG | + | chr1.1:60240581-60240600 | MS.gene005139:CDS | 30.0% | |
| TAAATTCTGGTATTGTAGGA+TGG | + | chr1.1:60240552-60240571 | MS.gene005139:intron | 30.0% | |
| TAATAAAAGAGAAACTTGGC+TGG | + | chr1.1:60240310-60240329 | MS.gene005139:CDS | 30.0% | |
| TATACCTTCAACTTCATTGT+TGG | - | chr1.1:60240339-60240358 | None:intergenic | 30.0% | |
| TCATCACTTCCAATATTTAC+CGG | - | chr1.1:60240174-60240193 | None:intergenic | 30.0% | |
| TTACAGCAGTATCTAAATTC+TGG | + | chr1.1:60240539-60240558 | MS.gene005139:intron | 30.0% | |
| TTTAGTATCCGTAATTGGTT+GGG | + | chr1.1:60240024-60240043 | MS.gene005139:intron | 30.0% | |
| ! | AGTACTGGAAAAACTAACTA+TGG | + | chr1.1:60238657-60238676 | MS.gene005139:CDS | 30.0% |
| ! | CATAACATATATGGTCCTTT+TGG | + | chr1.1:60239474-60239493 | MS.gene005139:CDS | 30.0% |
| ! | TACAGACAAATTTGAGATGT+GGG | + | chr1.1:60239677-60239696 | MS.gene005139:CDS | 30.0% |
| ! | TATCTGACACATCATGTTTT+TGG | + | chr1.1:60239066-60239085 | MS.gene005139:intron | 30.0% |
| ! | TCTTCTTTCAGAAAGTGTAA+TGG | + | chr1.1:60240419-60240438 | MS.gene005139:intron | 30.0% |
| ! | TTTGGTTGTTTGATGCATTT+TGG | + | chr1.1:60239297-60239316 | MS.gene005139:intron | 30.0% |
| ! | TTTTAGTATCCGTAATTGGT+TGG | + | chr1.1:60240023-60240042 | MS.gene005139:intron | 30.0% |
| !! | GCGAAAAATGTTTGTTTTTC+AGG | + | chr1.1:60239161-60239180 | MS.gene005139:intron | 30.0% |
| AACAACAGACCAAATTGTCA+GGG | - | chr1.1:60240118-60240137 | None:intergenic | 35.0% | |
| AACTACTAATGTCAGCTTGA+AGG | + | chr1.1:60239234-60239253 | MS.gene005139:CDS | 35.0% | |
| AACTGCTTAACGGTTACTAA+AGG | + | chr1.1:60238900-60238919 | MS.gene005139:CDS | 35.0% | |
| AATTCCATCTTGTTGATCTC+AGG | + | chr1.1:60238868-60238887 | MS.gene005139:CDS | 35.0% | |
| ACTGCTTAACGGTTACTAAA+GGG | + | chr1.1:60238901-60238920 | MS.gene005139:CDS | 35.0% | |
| ATACCTTTCCATGTTCCAAA+AGG | - | chr1.1:60239492-60239511 | None:intergenic | 35.0% | |
| ATTCCATCTTGTTGATCTCA+GGG | + | chr1.1:60238869-60238888 | MS.gene005139:CDS | 35.0% | |
| ATTGAAGCTGCTAGGATTAA+TGG | + | chr1.1:60239029-60239048 | MS.gene005139:CDS | 35.0% | |
| CAGCTCAAACATGAAAAGTT+TGG | - | chr1.1:60239892-60239911 | None:intergenic | 35.0% | |
| GGATTAAGGAACAACTTGAA+AGG | + | chr1.1:60240595-60240614 | MS.gene005139:CDS | 35.0% | |
| TAACAACAGACCAAATTGTC+AGG | - | chr1.1:60240119-60240138 | None:intergenic | 35.0% | |
| TAAGACACAAGAAAGAAGGA+AGG | - | chr1.1:60240370-60240389 | None:intergenic | 35.0% | |
| TATGATAAGCCCTGACAATT+TGG | + | chr1.1:60240106-60240125 | MS.gene005139:intron | 35.0% | |
| TCAATATGATTGAAGCTGCT+AGG | + | chr1.1:60239021-60239040 | MS.gene005139:CDS | 35.0% | |
| TCATGTTTGAGCTGTTCTAA+GGG | + | chr1.1:60239898-60239917 | MS.gene005139:intron | 35.0% | |
| TTCAACACACTCATCAATGA+AGG | - | chr1.1:60239730-60239749 | None:intergenic | 35.0% | |
| TTCATGTTTGAGCTGTTCTA+AGG | + | chr1.1:60239897-60239916 | MS.gene005139:intron | 35.0% | |
| TTCATTGATGAGTGTGTTGA+AGG | + | chr1.1:60239729-60239748 | MS.gene005139:CDS | 35.0% | |
| TTGGGATAGGGAAAATGATA+CGG | + | chr1.1:60240042-60240061 | MS.gene005139:intron | 35.0% | |
| ! | ACAGACAAATTTGAGATGTG+GGG | + | chr1.1:60239678-60239697 | MS.gene005139:CDS | 35.0% |
| ! | CACTTTCTGAAAGAAGATGA+AGG | - | chr1.1:60240416-60240435 | None:intergenic | 35.0% |
| ! | CTACAGACAAATTTGAGATG+TGG | + | chr1.1:60239676-60239695 | MS.gene005139:CDS | 35.0% |
| !! | AGTTTGTTGCTTTGTCATAC+AGG | + | chr1.1:60239606-60239625 | MS.gene005139:intron | 35.0% |
| !!! | TATATGGTCCTTTTGGAACA+TGG | + | chr1.1:60239481-60239500 | MS.gene005139:CDS | 35.0% |
| AAAATTTCCATCACTGGTGC+TGG | + | chr1.1:60238735-60238754 | MS.gene005139:CDS | 40.0% | |
| AAATTTCCATCACTGGTGCT+GGG | + | chr1.1:60238736-60238755 | MS.gene005139:CDS | 40.0% | |
| ACTCCTATACATCACATTCC+TGG | + | chr1.1:60240249-60240268 | MS.gene005139:CDS | 40.0% | |
| AGAAGATGAAGGAGCCAAAT+TGG | - | chr1.1:60240405-60240424 | None:intergenic | 40.0% | |
| AGGATATGGCTCATCAAAAG+TGG | + | chr1.1:60240644-60240663 | MS.gene005139:CDS | 40.0% | |
| ATCCGTAATTGGTTGGGATA+GGG | + | chr1.1:60240030-60240049 | MS.gene005139:intron | 40.0% | |
| CTCTCTCTCAAGATTCTCAT+AGG | - | chr1.1:60238691-60238710 | None:intergenic | 40.0% | |
| CTGCTTAACGGTTACTAAAG+GGG | + | chr1.1:60238902-60238921 | MS.gene005139:CDS | 40.0% | |
| GAAAAATGAGCACATGACTG+AGG | + | chr1.1:60238830-60238849 | MS.gene005139:CDS | 40.0% | |
| GGGAGGTTCCATAACATATA+TGG | + | chr1.1:60239465-60239484 | MS.gene005139:CDS | 40.0% | |
| GGTCATGGATAACTGCTTAA+CGG | + | chr1.1:60238890-60238909 | MS.gene005139:CDS | 40.0% | |
| GGTCTTGATACATCAGGATA+TGG | + | chr1.1:60240630-60240649 | MS.gene005139:CDS | 40.0% | |
| TATCCGTAATTGGTTGGGAT+AGG | + | chr1.1:60240029-60240048 | MS.gene005139:intron | 40.0% | |
| TCTTGGCTGATTGTTTGGTT+TGG | + | chr1.1:60239766-60239785 | MS.gene005139:intron | 40.0% | |
| TTCAATCTTGCCGCTGATAT+GGG | + | chr1.1:60238936-60238955 | MS.gene005139:CDS | 40.0% | |
| TTCCCTATCCCAACCAATTA+CGG | - | chr1.1:60240035-60240054 | None:intergenic | 40.0% | |
| TTTAGCCACAAGATGCGTAT+GGG | + | chr1.1:60239373-60239392 | MS.gene005139:intron | 40.0% | |
| TTTCAATCTTGCCGCTGATA+TGG | + | chr1.1:60238935-60238954 | MS.gene005139:CDS | 40.0% | |
| ! | AAATTTGAGATGTGGGGAGA+TGG | + | chr1.1:60239684-60239703 | MS.gene005139:CDS | 40.0% |
| ! | AGTGTGTTGAAGGTGTACTT+AGG | + | chr1.1:60239739-60239758 | MS.gene005139:CDS | 40.0% |
| ! | TGTTGAAGGTGTACTTAGGT+AGG | + | chr1.1:60239743-60239762 | MS.gene005139:intron | 40.0% |
| ! | TGTTGATTGAGTGAGCTAAC+TGG | - | chr1.1:60239959-60239978 | None:intergenic | 40.0% |
| !! | TTGTTGCTTTGTCATACAGG+TGG | + | chr1.1:60239609-60239628 | MS.gene005139:intron | 40.0% |
| !!! | TGAGATCGTTCTTGGTTTTG+AGG | + | chr1.1:60240218-60240237 | MS.gene005139:CDS | 40.0% |
| AGGGTAGATACAAGCACTTG+AGG | - | chr1.1:60239197-60239216 | None:intergenic | 45.0% | |
| AGGTGTACTTAGGTAGGTCT+TGG | + | chr1.1:60239749-60239768 | MS.gene005139:intron | 45.0% | |
| ATCTTGAGAGAGAGCCTTAC+TGG | + | chr1.1:60238697-60238716 | MS.gene005139:CDS | 45.0% | |
| CAGCGGCAAGATTGAAAACA+TGG | - | chr1.1:60238932-60238951 | None:intergenic | 45.0% | |
| GATGGTCAGCATGAATGAGA+TGG | + | chr1.1:60240194-60240213 | MS.gene005139:CDS | 45.0% | |
| GCTCAAGGTCTTGATACATC+AGG | + | chr1.1:60240624-60240643 | MS.gene005139:CDS | 45.0% | |
| GCTTTGTCATACAGGTGGAA+GGG | + | chr1.1:60239614-60239633 | MS.gene005139:intron | 45.0% | |
| GGAACAACTTGAAAGGGAGA+AGG | + | chr1.1:60240602-60240621 | MS.gene005139:CDS | 45.0% | |
| GGCTCCAACAATGAAGTTGA+AGG | + | chr1.1:60240332-60240351 | MS.gene005139:CDS | 45.0% | |
| GGCTGAGGATTACATATGTC+TGG | + | chr1.1:60240574-60240593 | MS.gene005139:CDS | 45.0% | |
| GTAGGTCTTGGCTGATTGTT+TGG | + | chr1.1:60239761-60239780 | MS.gene005139:intron | 45.0% | |
| GTTTAGCCACAAGATGCGTA+TGG | + | chr1.1:60239372-60239391 | MS.gene005139:intron | 45.0% | |
| TCTTGTTGATCTCAGGGTCA+TGG | + | chr1.1:60238875-60238894 | MS.gene005139:CDS | 45.0% | |
| TGACCCTGAGATCAACAAGA+TGG | - | chr1.1:60238875-60238894 | None:intergenic | 45.0% | |
| TGCTTTGTCATACAGGTGGA+AGG | + | chr1.1:60239613-60239632 | MS.gene005139:intron | 45.0% | |
| TGTTATGGAACCTCCCAATG+CGG | - | chr1.1:60239461-60239480 | None:intergenic | 45.0% | |
| ! | AATTTCCATCACTGGTGCTG+GGG | + | chr1.1:60238737-60238756 | MS.gene005139:CDS | 45.0% |
| ! | AGCTTTTCTGATGGCCAGTA+AGG | - | chr1.1:60238714-60238733 | None:intergenic | 45.0% |
| !! | GGTTTGTTCGCGATTCCTTT+TGG | + | chr1.1:60239279-60239298 | MS.gene005139:intron | 45.0% |
| !! | TTCCAATATTTACCGGCTCG+CGG | - | chr1.1:60240167-60240186 | None:intergenic | 45.0% |
| !!! | GGTCCTTTTGGAACATGGAA+AGG | + | chr1.1:60239486-60239505 | MS.gene005139:CDS | 45.0% |
| AATCGCGAACAAACCTCAGC+AGG | - | chr1.1:60239274-60239293 | None:intergenic | 50.0% | |
| AATCTTGCCGCTGATATGGG+TGG | + | chr1.1:60238939-60238958 | MS.gene005139:CDS | 50.0% | |
| ACCCATTCCACCCATATCAG+CGG | - | chr1.1:60238949-60238968 | None:intergenic | 50.0% | |
| CGAAGTGAGCCTAATTGGAC+CGG | - | chr1.1:60240684-60240703 | None:intergenic | 50.0% | |
| CGGTCCAATTAGGCTCACTT+CGG | + | chr1.1:60240682-60240701 | MS.gene005139:CDS | 50.0% | |
| CTTGAAAGGGAGAAGGCTCA+AGG | + | chr1.1:60240609-60240628 | MS.gene005139:CDS | 50.0% | |
| GAGATGGCTGAGATCGTTCT+TGG | + | chr1.1:60240210-60240229 | MS.gene005139:CDS | 50.0% | |
| GCTAGAGAAGCTTGCAACAG+AGG | + | chr1.1:60239395-60239414 | MS.gene005139:CDS | 50.0% | |
| GCTTGAAGGAGTCTGATGCA+TGG | + | chr1.1:60239248-60239267 | MS.gene005139:CDS | 50.0% | |
| GCTTTCCGACAAAAAGCAGC+AGG | - | chr1.1:60239648-60239667 | None:intergenic | 50.0% | |
| GGGCCAGGAATGTGATGTAT+AGG | - | chr1.1:60240255-60240274 | None:intergenic | 50.0% | |
| GGTCCAATTAGGCTCACTTC+GGG | + | chr1.1:60240683-60240702 | MS.gene005139:CDS | 50.0% | |
| TAAATCCGATTTCCGCGAGC+CGG | + | chr1.1:60240152-60240171 | MS.gene005139:CDS | 50.0% | |
| TCATACAGGTGGAAGGGAGA+AGG | + | chr1.1:60239620-60239639 | MS.gene005139:intron | 50.0% | |
| TCTAGCCCATACGCATCTTG+TGG | - | chr1.1:60239381-60239400 | None:intergenic | 50.0% | |
| TTCCGCGAGCCGGTAAATAT+TGG | + | chr1.1:60240162-60240181 | MS.gene005139:CDS | 50.0% | |
| ! | ATTTCCATCACTGGTGCTGG+GGG | + | chr1.1:60238738-60238757 | MS.gene005139:CDS | 50.0% |
| ! | TCGGAATTGAGTGCCGCATT+GGG | + | chr1.1:60239445-60239464 | MS.gene005139:CDS | 50.0% |
| ! | TTCGGAATTGAGTGCCGCAT+TGG | + | chr1.1:60239444-60239463 | MS.gene005139:CDS | 50.0% |
| !! | ATTTACCGGCTCGCGGAAAT+CGG | - | chr1.1:60240160-60240179 | None:intergenic | 50.0% |
| !! | TGGTATTGTAGGATGGGCTG+AGG | + | chr1.1:60240559-60240578 | MS.gene005139:intron | 50.0% |
| !!! | AGGCTCCTGCTGCTTTTTGT+CGG | + | chr1.1:60239640-60239659 | MS.gene005139:CDS | 50.0% |
| AAAACCCCCAGCACCAGTGA+TGG | - | chr1.1:60238745-60238764 | None:intergenic | 55.0% | |
| ACATCACATTCCTGGCCCAG+AGG | + | chr1.1:60240257-60240276 | MS.gene005139:CDS | 55.0% | |
| AGCCTAATTGGACCGGTGCT+TGG | - | chr1.1:60240677-60240696 | None:intergenic | 55.0% | |
| AGTGGTGCAAACCCAAGCAC+CGG | + | chr1.1:60240662-60240681 | MS.gene005139:CDS | 55.0% | |
| CATCACATTCCTGGCCCAGA+GGG | + | chr1.1:60240258-60240277 | MS.gene005139:CDS | 55.0% | |
| CTGCCCGAAGTGAGCCTAAT+TGG | - | chr1.1:60240689-60240708 | None:intergenic | 55.0% | |
| GCCGCTGATATGGGTGGAAT+GGG | + | chr1.1:60238945-60238964 | MS.gene005139:CDS | 55.0% | |
| GCCTAATTGGACCGGTGCTT+GGG | - | chr1.1:60240676-60240695 | None:intergenic | 55.0% | |
| TACGACCACGAACACCCTCT+GGG | - | chr1.1:60240275-60240294 | None:intergenic | 55.0% | |
| TGCCGCTGATATGGGTGGAA+TGG | + | chr1.1:60238944-60238963 | MS.gene005139:CDS | 55.0% | |
| TTACGACCACGAACACCCTC+TGG | - | chr1.1:60240276-60240295 | None:intergenic | 55.0% | |
| TTATCGCGTCGCACTTAGCG+CGG | + | chr1.1:60238763-60238782 | MS.gene005139:CDS | 55.0% | |
| ! | GAATTGAGTGCCGCATTGGG+AGG | + | chr1.1:60239448-60239467 | MS.gene005139:CDS | 55.0% |
| !! | ACCCAAGCACCGGTCCAATT+AGG | + | chr1.1:60240672-60240691 | MS.gene005139:CDS | 55.0% |
| CTTAGCGCGGCGTCTCAAGA+AGG | + | chr1.1:60238776-60238795 | MS.gene005139:CDS | 60.0% | |
| GTCTGATGCATGGCCTGCTG+AGG | + | chr1.1:60239258-60239277 | MS.gene005139:CDS | 60.0% | |
| AGCGCGGCGTCTCAAGAAGG+AGG | + | chr1.1:60238779-60238798 | MS.gene005139:CDS | 65.0% | |
| GCGCGGCGTCTCAAGAAGGA+GGG | + | chr1.1:60238780-60238799 | MS.gene005139:CDS | 65.0% | |
| GGCTCACTTCGGGCAGCAGA+CGG | + | chr1.1:60240693-60240712 | MS.gene005139:CDS | 65.0% | |
| CCACGAACACCCTCTGGGCC+AGG | - | chr1.1:60240270-60240289 | None:intergenic | 70.0% | |
| !! | CCTGGCCCAGAGGGTGTTCG+TGG | + | chr1.1:60240267-60240286 | MS.gene005139:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 60238651 | 60240731 | 60238651 | ID=MS.gene005139 |
| chr1.1 | mRNA | 60238651 | 60240731 | 60238651 | ID=MS.gene005139.t1;Parent=MS.gene005139 |
| chr1.1 | exon | 60238651 | 60239060 | 60238651 | ID=MS.gene005139.t1.exon1;Parent=MS.gene005139.t1 |
| chr1.1 | CDS | 60238651 | 60239060 | 60238651 | ID=cds.MS.gene005139.t1;Parent=MS.gene005139.t1 |
| chr1.1 | exon | 60239183 | 60239279 | 60239183 | ID=MS.gene005139.t1.exon2;Parent=MS.gene005139.t1 |
| chr1.1 | CDS | 60239183 | 60239279 | 60239183 | ID=cds.MS.gene005139.t1;Parent=MS.gene005139.t1 |
| chr1.1 | exon | 60239378 | 60239507 | 60239378 | ID=MS.gene005139.t1.exon3;Parent=MS.gene005139.t1 |
| chr1.1 | CDS | 60239378 | 60239507 | 60239378 | ID=cds.MS.gene005139.t1;Parent=MS.gene005139.t1 |
| chr1.1 | exon | 60239628 | 60239760 | 60239628 | ID=MS.gene005139.t1.exon4;Parent=MS.gene005139.t1 |
| chr1.1 | CDS | 60239628 | 60239760 | 60239628 | ID=cds.MS.gene005139.t1;Parent=MS.gene005139.t1 |
| chr1.1 | exon | 60240146 | 60240353 | 60240146 | ID=MS.gene005139.t1.exon5;Parent=MS.gene005139.t1 |
| chr1.1 | CDS | 60240146 | 60240353 | 60240146 | ID=cds.MS.gene005139.t1;Parent=MS.gene005139.t1 |
| chr1.1 | exon | 60240570 | 60240731 | 60240570 | ID=MS.gene005139.t1.exon6;Parent=MS.gene005139.t1 |
| chr1.1 | CDS | 60240570 | 60240731 | 60240570 | ID=cds.MS.gene005139.t1;Parent=MS.gene005139.t1 |
| Gene Sequence |
| Protein sequence |
