AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064894

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064894.t1 MTR_3g116500 99.735 378 1 0 1 378 1 378 0.0 776
MS.gene064894.t1 MTR_3g116500 99.627 268 1 0 111 378 1 268 0.0 549
MS.gene064894.t1 MTR_1g054300 24.566 346 205 10 60 369 156 481 7.17e-18 85.5
MS.gene064894.t1 MTR_6g004040 29.798 198 122 6 172 369 32 212 1.05e-17 85.5
MS.gene064894.t1 MTR_6g004040 27.391 230 144 9 144 371 47 255 6.50e-12 67.4
MS.gene064894.t1 MTR_5g022690 28.761 226 138 9 150 372 273 478 1.20e-17 84.7
MS.gene064894.t1 MTR_5g022690 24.903 257 141 7 113 369 186 390 7.27e-12 67.0
MS.gene064894.t1 MTR_5g022690 24.201 219 152 4 57 275 271 475 4.48e-11 64.7
MS.gene064894.t1 MTR_4g119620 28.509 228 147 7 148 371 19 234 1.87e-17 82.8
MS.gene064894.t1 MTR_4g119620 24.074 324 210 13 59 369 21 321 6.99e-13 69.3
MS.gene064894.t1 MTR_2g012630 32.323 198 117 7 172 369 31 211 2.63e-17 84.3
MS.gene064894.t1 MTR_2g012630 32.323 198 117 7 172 369 31 211 2.67e-17 84.3
MS.gene064894.t1 MTR_4g095058 25.275 364 211 16 35 371 204 533 3.15e-17 83.6
MS.gene064894.t1 MTR_4g095058 25.207 242 146 10 60 287 323 543 8.26e-14 73.2
MS.gene064894.t1 MTR_4g095058 25.275 364 211 16 35 371 206 535 3.56e-17 83.6
MS.gene064894.t1 MTR_4g095058 25.207 242 146 10 60 287 325 545 9.65e-14 72.8
MS.gene064894.t1 MTR_5g016350 23.497 366 217 15 35 371 145 476 1.77e-16 81.3
MS.gene064894.t1 MTR_5g016350 23.967 242 149 9 60 287 266 486 5.95e-12 67.4
MS.gene064894.t1 MTR_7g086360 29.588 267 158 11 110 369 58 301 1.86e-16 80.1
MS.gene064894.t1 MTR_7g086360 27.727 220 140 7 151 369 50 251 1.18e-15 77.8
MS.gene064894.t1 MTR_7g086360 21.786 280 195 8 61 334 51 312 7.10e-13 69.3
MS.gene064894.t1 MTR_5g016350 23.497 366 217 15 35 371 209 540 2.85e-16 80.9
MS.gene064894.t1 MTR_5g016350 23.967 242 149 9 60 287 330 550 6.58e-12 67.4
MS.gene064894.t1 MTR_5g016370 23.362 351 213 13 47 371 232 552 3.60e-16 80.5
MS.gene064894.t1 MTR_5g016370 22.822 241 151 9 60 286 342 561 9.76e-14 73.2
MS.gene064894.t1 MTR_3g106080 27.632 228 145 7 151 377 414 622 7.69e-16 79.7
MS.gene064894.t1 MTR_3g106080 26.749 243 163 6 61 303 415 642 1.30e-15 79.0
MS.gene064894.t1 MTR_3g106080 28.571 217 130 8 110 324 422 615 1.06e-12 69.7
MS.gene064894.t1 MTR_1g072140 23.102 303 208 6 59 353 21 306 2.31e-15 76.6
MS.gene064894.t1 MTR_1g072140 27.103 214 145 5 57 270 103 305 1.46e-14 74.3
MS.gene064894.t1 MTR_1g072140 26.728 217 143 6 161 377 31 231 1.62e-14 73.9
MS.gene064894.t1 MTR_1g072140 21.600 250 175 6 40 284 44 277 9.80e-11 62.8
MS.gene064894.t1 MTR_8g106790 24.405 336 213 11 60 374 10 325 7.61e-15 75.1
MS.gene064894.t1 MTR_8g038550 24.585 301 198 11 73 370 191 465 1.32e-14 75.9
MS.gene064894.t1 MTR_2g436510 25.229 218 144 7 150 367 164 362 1.53e-14 75.1
MS.gene064894.t1 MTR_2g102277 23.529 255 178 4 68 322 60 297 4.97e-14 74.3
MS.gene064894.t1 MTR_2g102277 23.529 255 178 4 68 322 60 297 5.90e-14 73.9
MS.gene064894.t1 MTR_3g045130 24.710 259 169 8 113 370 278 511 1.54e-13 72.4
MS.gene064894.t1 MTR_4g011950 23.137 255 179 4 68 322 60 297 2.51e-13 72.0
MS.gene064894.t1 MTR_4g102520 23.824 319 219 10 60 373 289 588 2.66e-13 71.6
MS.gene064894.t1 MTR_1g097140 27.586 261 164 10 110 369 83 319 2.13e-12 68.6
MS.gene064894.t1 MTR_1g097140 24.684 316 206 10 61 373 119 405 1.16e-11 66.2
MS.gene064894.t1 MTR_2g054920 25.094 267 176 7 60 325 56 299 2.73e-12 67.8
MS.gene064894.t1 MTR_8g092620 25.697 323 187 14 61 369 14 297 2.93e-12 67.0
MS.gene064894.t1 MTR_2g102267 22.989 261 182 5 59 318 53 295 3.42e-12 67.0
MS.gene064894.t1 MTR_7g104550 28.452 239 149 10 145 369 5 235 6.80e-12 66.6
MS.gene064894.t1 MTR_1g044720 27.094 203 129 8 122 324 237 420 1.77e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064894.t1 AT4G34460 80.211 379 72 2 1 378 1 377 0.0 607
MS.gene064894.t1 AT4G34460 79.947 379 68 3 1 378 1 372 0.0 596
MS.gene064894.t1 AT4G34460 81.150 313 56 2 67 378 5 315 0.0 526
MS.gene064894.t1 AT4G34460 79.104 335 67 2 1 334 1 333 0.0 524
MS.gene064894.t1 AT5G67320 26.316 342 193 12 59 371 259 570 2.92e-20 92.8
MS.gene064894.t1 AT5G67320 23.404 235 157 8 60 286 360 579 9.88e-14 73.2
MS.gene064894.t1 AT5G52820 23.499 383 211 9 57 369 101 471 1.56e-19 90.5
MS.gene064894.t1 AT4G02730 25.338 296 199 10 38 332 19 293 1.76e-19 89.0
MS.gene064894.t1 AT4G02730 26.522 230 151 7 150 377 37 250 1.03e-14 74.7
MS.gene064894.t1 AT2G41500 26.718 262 163 9 115 374 306 540 3.07e-18 86.7
MS.gene064894.t1 AT2G41500 26.718 262 163 9 115 374 306 540 3.07e-18 86.7
MS.gene064894.t1 AT5G25150 31.364 220 131 8 151 369 413 613 7.48e-18 85.9
MS.gene064894.t1 AT5G25150 27.419 248 165 6 49 296 402 634 3.04e-17 84.0
MS.gene064894.t1 AT5G25150 31.364 220 131 8 151 369 413 613 7.73e-18 85.9
MS.gene064894.t1 AT5G25150 27.419 248 165 6 49 296 402 634 3.08e-17 84.0
MS.gene064894.t1 AT5G13480 26.333 300 192 10 73 369 142 415 4.25e-17 83.6
MS.gene064894.t1 AT5G13480 26.333 300 192 10 73 369 119 392 4.32e-17 83.2
MS.gene064894.t1 AT5G13480 26.333 300 192 10 73 369 131 404 4.36e-17 83.6
MS.gene064894.t1 AT5G13480 26.333 300 192 10 73 369 119 392 4.93e-17 83.2
MS.gene064894.t1 AT3G16650 27.064 218 139 9 150 367 164 361 1.43e-16 81.3
MS.gene064894.t1 AT3G16650 23.659 317 211 11 59 369 164 455 4.15e-11 64.7
MS.gene064894.t1 AT1G11160 31.313 198 119 7 172 369 31 211 1.98e-16 81.6
MS.gene064894.t1 AT1G11160 31.313 198 119 7 172 369 31 211 2.05e-16 81.6
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.20e-16 81.6
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.20e-16 81.6
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.20e-16 81.6
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.20e-16 81.6
MS.gene064894.t1 AT1G11160 31.313 198 119 7 172 369 31 211 2.25e-16 81.6
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.28e-16 81.3
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.65e-16 81.3
MS.gene064894.t1 AT3G15980 23.273 275 188 7 52 323 2 256 2.75e-16 81.3
MS.gene064894.t1 AT5G08390 29.798 198 122 7 172 369 32 212 5.11e-16 80.5
MS.gene064894.t1 AT1G61210 30.808 198 120 7 172 369 31 211 7.48e-16 80.1
MS.gene064894.t1 AT1G61210 30.808 198 120 7 172 369 31 211 9.89e-16 79.7
MS.gene064894.t1 AT1G61210 30.808 198 120 7 172 369 31 211 1.01e-15 79.7
MS.gene064894.t1 AT5G23430 29.798 198 122 7 172 369 32 212 1.62e-15 79.0
MS.gene064894.t1 AT5G23430 24.843 318 192 15 63 366 14 298 3.36e-11 65.5
MS.gene064894.t1 AT5G23430 29.798 198 122 7 172 369 32 212 1.70e-15 78.6
MS.gene064894.t1 AT5G23430 24.843 318 192 15 63 366 14 298 3.39e-11 65.5
MS.gene064894.t1 AT5G23430 29.798 198 122 7 172 369 32 212 1.70e-15 78.6
MS.gene064894.t1 AT5G23430 24.843 318 192 15 63 366 14 298 3.39e-11 65.5
MS.gene064894.t1 AT1G52360 22.909 275 189 7 52 323 2 256 1.93e-15 78.6
MS.gene064894.t1 AT1G52360 23.529 255 178 4 68 322 60 297 1.35e-14 75.9
MS.gene064894.t1 AT1G52360 22.909 275 189 7 52 323 2 256 2.08e-15 78.6
MS.gene064894.t1 AT1G52360 23.529 255 178 4 68 322 60 297 1.61e-14 75.9
MS.gene064894.t1 AT1G52360 22.909 275 189 7 52 323 2 256 2.08e-15 78.6
MS.gene064894.t1 AT1G52360 23.529 255 178 4 68 322 60 297 1.61e-14 75.9
MS.gene064894.t1 AT1G52360 22.909 275 189 7 52 323 46 300 2.42e-15 78.2
MS.gene064894.t1 AT1G52360 23.529 255 178 4 68 322 104 341 1.51e-14 75.9
MS.gene064894.t1 AT2G43770 27.273 220 141 7 151 369 48 249 2.70e-15 76.6
MS.gene064894.t1 AT2G43770 23.162 272 185 7 110 377 56 307 2.67e-13 70.9
MS.gene064894.t1 AT2G43770 21.147 279 155 7 61 334 92 310 1.80e-11 65.1
MS.gene064894.t1 AT1G11160 30.952 168 104 5 202 369 14 169 4.57e-15 77.4
MS.gene064894.t1 AT3G49660 23.333 330 223 11 47 369 6 312 6.03e-15 75.5
MS.gene064894.t1 AT4G15900 25.571 219 145 7 150 368 170 370 9.67e-15 75.9
MS.gene064894.t1 AT4G15900 25.157 318 206 11 59 369 170 462 3.57e-12 68.2
MS.gene064894.t1 AT2G33340 25.595 336 169 15 92 376 209 514 2.13e-14 75.1
MS.gene064894.t1 AT2G33340 25.595 336 169 15 92 376 209 514 2.13e-14 75.1
MS.gene064894.t1 AT1G79990 23.137 255 179 4 68 322 60 297 3.27e-14 74.7
MS.gene064894.t1 AT1G79990 23.137 255 179 4 68 322 60 297 3.47e-14 74.7
MS.gene064894.t1 AT1G71840 26.812 276 176 10 61 331 109 363 7.33e-14 72.8
MS.gene064894.t1 AT1G15470 26.000 250 143 7 60 275 51 292 9.59e-14 72.0
MS.gene064894.t1 AT3G18130 23.734 316 200 11 80 374 31 326 1.79e-13 71.2
MS.gene064894.t1 AT3G15610 26.855 283 160 8 60 308 56 325 2.76e-13 70.9
MS.gene064894.t1 AT1G10580 24.290 317 212 11 60 369 277 572 8.53e-13 70.1
MS.gene064894.t1 AT1G10580 23.699 173 122 3 201 372 279 442 9.49e-11 63.9
MS.gene064894.t1 AT4G29830 31.183 186 104 8 97 276 152 319 1.44e-12 68.6
MS.gene064894.t1 AT5G53500 21.257 334 220 10 61 370 217 531 6.17e-12 67.4
MS.gene064894.t1 AT5G53500 21.257 334 220 10 61 370 217 531 6.17e-12 67.4
MS.gene064894.t1 AT3G15470 22.892 332 229 11 53 371 401 718 1.20e-11 67.0
MS.gene064894.t1 AT1G48630 23.418 316 201 11 80 374 31 326 1.21e-11 65.5
MS.gene064894.t1 AT5G64730 24.367 316 200 12 61 369 14 297 1.92e-11 64.7
MS.gene064894.t1 AT3G18140 24.242 231 155 8 150 375 29 244 1.94e-11 64.7
MS.gene064894.t1 AT1G52730 26.400 250 142 6 60 275 56 297 2.24e-11 65.1
MS.gene064894.t1 AT1G52730 26.400 250 142 6 60 275 56 297 2.24e-11 65.1
MS.gene064894.t1 AT1G18080 24.260 338 213 13 60 374 10 327 2.59e-11 64.7
MS.gene064894.t1 AT2G33340 27.500 200 128 7 172 369 237 421 5.84e-11 64.3

Find 95 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGTTTGGGATACTTTAT+TGG 0.165728 3.3:-94887829 MS.gene064894:CDS
ACTCTCAGCATTTCCATTAA+TGG 0.169125 3.3:-94888170 MS.gene064894:intron
AGAACCAGATACAAACATTT+TGG 0.219891 3.3:+94888139 None:intergenic
TTTGGAGTTGGATCCATTAA+TGG 0.230052 3.3:+94888157 None:intergenic
TTTCCTGATGGAAATAGATT+TGG 0.276868 3.3:-94888020 MS.gene064894:CDS
AACTCCAAAATGTTTGTATC+TGG 0.288983 3.3:-94888143 MS.gene064894:CDS
TGAGGGCAGGATCACCTGTT+TGG 0.300230 3.3:-94886223 MS.gene064894:CDS
GAAGACACTCACTTAATTAC+TGG 0.314223 3.3:-94888404 MS.gene064894:CDS
CTTGCAGATTGTTTGACATT+AGG 0.319869 3.3:-94887977 MS.gene064894:CDS
GGTAGAACTCCCGTTACTTT+TGG 0.320614 3.3:-94889180 MS.gene064894:CDS
AAGTTGGGACACAAATTTAA+AGG 0.324926 3.3:-94886166 MS.gene064894:intron
TCCGGAAGACTTCTTATTGC+TGG 0.330505 3.3:-94887870 MS.gene064894:CDS
CAAATGGCGATTGCTATGTT+TGG 0.331633 3.3:-94887842 MS.gene064894:CDS
AAGATGGAAGATTAATAGTA+TGG 0.336164 3.3:-94888652 MS.gene064894:CDS
TCATCTTGTCAGTATGTTCC+AGG 0.349435 3.3:-94888428 MS.gene064894:CDS
GAGGGCAGGATCACCTGTTT+GGG 0.353821 3.3:-94886222 MS.gene064894:CDS
ATCTTAATTCACCCACTGAT+AGG 0.354475 3.3:-94888502 MS.gene064894:CDS
AATAAGAAGTCTTCCGGATA+TGG 0.370745 3.3:+94887875 None:intergenic
TTTGAAGAGATCCTAGATTC+AGG 0.375592 3.3:+94886253 None:intergenic
CGAGCAGTACGGACATTTCA+TGG 0.392393 3.3:-94888074 MS.gene064894:CDS
AGAACTCTCCAAGGTCATAC+TGG 0.399531 3.3:-94889135 MS.gene064894:CDS
AAATGGCGATTGCTATGTTT+GGG 0.404058 3.3:-94887841 MS.gene064894:CDS
TCCAGCAATAAGAAGTCTTC+CGG 0.412039 3.3:+94887869 None:intergenic
CACACGAGTGTCCCACAATC+TGG 0.420398 3.3:+94888103 None:intergenic
CTTATTGCTGGATATACAAA+TGG 0.425275 3.3:-94887858 MS.gene064894:CDS
TGCTTTGTGTACAGGAAGTT+GGG 0.428629 3.3:-94886181 MS.gene064894:CDS
TCCATTGCATTCTCCATATC+CGG 0.434553 3.3:-94887888 MS.gene064894:CDS
AATGTTTCAAGGATGCTTAG+TGG 0.436820 3.3:-94888467 MS.gene064894:CDS
AGGATGCTTAGTGGACATAA+AGG 0.438435 3.3:-94888458 MS.gene064894:CDS
GTGCTTTGTGTACAGGAAGT+TGG 0.441799 3.3:-94886182 MS.gene064894:CDS
TTGTAGGTGGTCCTGAATCT+AGG 0.445164 3.3:-94886264 MS.gene064894:intron
ACGTTCTCTGAGATTGTTGA+CGG 0.446190 3.3:+94889344 None:intergenic
ATCAGCAGACAAACCCAAAC+AGG 0.447682 3.3:+94886209 None:intergenic
ACATGTGCTTTCTCCCCAAC+TGG 0.452968 3.3:-94888572 MS.gene064894:CDS
ATCTTGCAGATATGGGCATT+TGG 0.456934 3.3:-94884984 MS.gene064894:intron
TACAGGTTTACTCATTGGAT+TGG 0.465737 3.3:-94888709 MS.gene064894:intron
TCTGTCAAATTCTTTCCTGA+TGG 0.470264 3.3:-94888032 MS.gene064894:CDS
GTTCCAAATCTATTTCCATC+AGG 0.472273 3.3:+94888017 None:intergenic
TTGGGATACTTTATTGGCTA+AGG 0.475505 3.3:-94887823 MS.gene064894:intron
TGTTTGGGTTTGTCTGCTGA+TGG 0.484615 3.3:-94886207 MS.gene064894:CDS
AGTTCTACAGCAAAGGATAT+CGG 0.491736 3.3:+94889152 None:intergenic
ACTCACTTAATTACTGGTTC+TGG 0.492296 3.3:-94888398 MS.gene064894:CDS
ATGCAACAGATTGACCAGTT+GGG 0.494182 3.3:+94888558 None:intergenic
TTTGGAGGTGAATTTCAGTC+TGG 0.494970 3.3:-94888323 MS.gene064894:CDS
TTTGGAACTGGCTCAGAAGA+TGG 0.495617 3.3:-94888002 MS.gene064894:CDS
GATGGAAATAGATTTGGAAC+TGG 0.496817 3.3:-94888014 MS.gene064894:CDS
ACACAGCAGTGACAACGAAA+TGG 0.496865 3.3:-94887922 MS.gene064894:CDS
GATGGAAGTGCTTTGTGTAC+AGG 0.510526 3.3:-94886189 MS.gene064894:CDS
GCTGATTATATACTTGAAGT+TGG 0.510768 3.3:+94887946 None:intergenic
ATGGGAATCTAAATGTTTCA+AGG 0.511123 3.3:-94888478 MS.gene064894:CDS
GCGATGCGACTGCCAGATTG+TGG 0.518560 3.3:-94888115 MS.gene064894:CDS
TTCAAAACTCTCATGAGGGC+AGG 0.518906 3.3:-94886236 MS.gene064894:CDS
TGCAGATATGGGCATTTGGA+GGG 0.521400 3.3:-94884980 MS.gene064894:intron
CTATAAAGCTTCCTTGTGCA+TGG 0.525053 3.3:-94888601 MS.gene064894:CDS
TCGGTGGGACCAAAAGTAAC+GGG 0.529222 3.3:+94889171 None:intergenic
TTGCAGATATGGGCATTTGG+AGG 0.529874 3.3:-94884981 MS.gene064894:intron
AAACCTTTCCAGTATGACCT+TGG 0.530807 3.3:+94889127 None:intergenic
TCTTAATTCACCCACTGATA+GGG 0.531433 3.3:-94888501 MS.gene064894:CDS
CATGCAACAGATTGACCAGT+TGG 0.543738 3.3:+94888557 None:intergenic
GACATACTGCAGATGTACTT+AGG 0.555324 3.3:-94888301 MS.gene064894:intron
ATTCACCCACTGATAGGGAT+GGG 0.578801 3.3:-94888496 MS.gene064894:CDS
CGATGCGACTGCCAGATTGT+GGG 0.579543 3.3:-94888114 MS.gene064894:CDS
TGCAACAGATTGACCAGTTG+GGG 0.579784 3.3:+94888559 None:intergenic
AGATTGTTTGACATTAGGAC+TGG 0.580110 3.3:-94887972 MS.gene064894:CDS
GGTCAATCTGTTGCATGCGG+TGG 0.581213 3.3:-94888551 MS.gene064894:CDS
GGCATTTGGAGGGCATAGGA+AGG 0.581427 3.3:-94884970 MS.gene064894:CDS
AATTCACCCACTGATAGGGA+TGG 0.581894 3.3:-94888497 MS.gene064894:CDS
ATTGTTAGTGCATCTCAAGA+TGG 0.582738 3.3:-94888668 MS.gene064894:CDS
GCTGGTTATGCAAAGTCTCA+AGG 0.587086 3.3:-94889201 MS.gene064894:CDS
ATCGGTGGGACCAAAAGTAA+CGG 0.588862 3.3:+94889170 None:intergenic
CGGACATTTCATGGGCATGA+GGG 0.590801 3.3:-94888065 MS.gene064894:CDS
TAGATTCCCATCCCTATCAG+TGG 0.592534 3.3:+94888490 None:intergenic
CTTTGCTGTAGAACTCTCCA+AGG 0.594435 3.3:-94889144 MS.gene064894:CDS
GAGCAGTACGGACATTTCAT+GGG 0.596617 3.3:-94888073 MS.gene064894:CDS
AGATTCCCATCCCTATCAGT+GGG 0.597288 3.3:+94888491 None:intergenic
CTTGGAGAGTTCTACAGCAA+AGG 0.598090 3.3:+94889145 None:intergenic
ATCTCTTCAAAACTCTCATG+AGG 0.599478 3.3:-94886241 MS.gene064894:CDS
TCTCCAAGGTCATACTGGAA+AGG 0.600548 3.3:-94889130 MS.gene064894:intron
ACGGACATTTCATGGGCATG+AGG 0.601876 3.3:-94888066 MS.gene064894:CDS
ATTAAGTGAGTGTCTTCACC+TGG 0.602650 3.3:+94888410 None:intergenic
AGAACGTCACATAGCTGCAA+CGG 0.607199 3.3:-94889370 MS.gene064894:CDS
TCCGGATATGGAGAATGCAA+TGG 0.614685 3.3:+94887887 None:intergenic
CATGTCATGACCCATGCACA+AGG 0.615734 3.3:+94888590 None:intergenic
TATAAAGCTTCCTTGTGCAT+GGG 0.618387 3.3:-94888600 MS.gene064894:CDS
GTGTGGCAAGTCGAGCAGTA+CGG 0.621594 3.3:-94888085 MS.gene064894:CDS
AAATAGAACAAACACTGTCA+AGG 0.643390 3.3:+94888528 None:intergenic
AACAGATGTTCGAAGGCCAG+TGG 0.644681 3.3:+94888346 None:intergenic
TATGGGCATTTGGAGGGCAT+AGG 0.646559 3.3:-94884974 MS.gene064894:CDS
TCTACAGCAAAGGATATCGG+TGG 0.646947 3.3:+94889155 None:intergenic
TCTCTTCAAAACTCTCATGA+GGG 0.650264 3.3:-94886240 MS.gene064894:CDS
CTACAGCAAAGGATATCGGT+GGG 0.670691 3.3:+94889156 None:intergenic
CAGATTGTGGGACACTCGTG+TGG 0.674572 3.3:-94888102 MS.gene064894:CDS
GGATATGGAGAATGCAATGG+AGG 0.676943 3.3:+94887890 None:intergenic
ACTGGTCAATCTGTTGCATG+CGG 0.714193 3.3:-94888554 MS.gene064894:CDS
TATCTGTATCAAGAAGAGAG+AGG 0.734700 3.3:+94889307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTAAGCTAAAAT+CGG - chr3.3:94885471-94885490 MS.gene064894:intron 10.0%
!!! AAATTTTTTTCTTATTTTGA+AGG - chr3.3:94887725-94887744 MS.gene064894:intron 10.0%
!!! AATTTTTTTCTTATTTTGAA+GGG - chr3.3:94887726-94887745 MS.gene064894:intron 10.0%
!!! ATTTCTACTTATTATATTTT+GGG - chr3.3:94886711-94886730 MS.gene064894:intron 10.0%
!!! TATTTCTACTTATTATATTT+TGG - chr3.3:94886710-94886729 MS.gene064894:intron 10.0%
!!! TTTTCTTTTTTCAAAAAATA+TGG + chr3.3:94887892-94887911 None:intergenic 10.0%
!! AAGAAGATATTAAATGAATA+AGG + chr3.3:94887055-94887074 None:intergenic 15.0%
!! AGTTAATATGAATTATTTGA+AGG - chr3.3:94887702-94887721 MS.gene064894:intron 15.0%
!! TATTCTAATTTCTTCTTAAT+CGG - chr3.3:94885303-94885322 MS.gene064894:intron 15.0%
!!! AAAAAGCATTATATTTATGA+TGG - chr3.3:94888439-94888458 MS.gene064894:CDS 15.0%
!!! ATATTTTTGTTATAAAAGAG+AGG + chr3.3:94889068-94889087 None:intergenic 15.0%
!!! TAATTCCTAATTCTTTTTAA+AGG + chr3.3:94888409-94888428 None:intergenic 15.0%
!!! TATTTTTGTTATAAAAGAGA+GGG + chr3.3:94889067-94889086 None:intergenic 15.0%
!!! TTAAACCTTTAAAAAGAATT+AGG - chr3.3:94888401-94888420 MS.gene064894:CDS 15.0%
!!! TTGATAATATTACTATACTA+TGG - chr3.3:94889200-94889219 MS.gene064894:CDS 15.0%
!! ATCTTTGTTGCTATAATATA+AGG - chr3.3:94885501-94885520 MS.gene064894:intron 20.0%
!! GATTATGTAAAACAAAAGTA+GGG - chr3.3:94886570-94886589 MS.gene064894:intron 20.0%
!! GCATTATCTTGTATATAAAT+TGG - chr3.3:94887542-94887561 MS.gene064894:intron 20.0%
!! GTAACATTTATTTATTGTCT+TGG + chr3.3:94886983-94887002 None:intergenic 20.0%
!! GTACAAAATAAAATAAACAG+CGG + chr3.3:94887628-94887647 None:intergenic 20.0%
!! TAAATAACTAAGGGTAATAA+TGG - chr3.3:94887097-94887116 MS.gene064894:intron 20.0%
!! TATTTGATACAAATATGCAT+TGG + chr3.3:94889229-94889248 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr3.3:94886947-94886966 None:intergenic 20.0%
!! TCTATCTTGAAAAAATGTTT+AGG - chr3.3:94889321-94889340 MS.gene064894:CDS 20.0%
!! TCTTTGTTGCTATAATATAA+GGG - chr3.3:94885502-94885521 MS.gene064894:intron 20.0%
!! TGATTATGTAAAACAAAAGT+AGG - chr3.3:94886569-94886588 MS.gene064894:intron 20.0%
!! TTAAATGAATAAGGTCATTA+TGG + chr3.3:94887046-94887065 None:intergenic 20.0%
!! TTGTATCAAATAATATATCC+AGG - chr3.3:94889237-94889256 MS.gene064894:intron 20.0%
!!! AAACATTTTTTCAAGATAGA+CGG + chr3.3:94889321-94889340 None:intergenic 20.0%
!!! ACAGAATCTTATTTTCTATA+TGG + chr3.3:94887361-94887380 None:intergenic 20.0%
!!! CAGAATCTTATTTTCTATAT+GGG + chr3.3:94887360-94887379 None:intergenic 20.0%
!!! GATTTCACTGATTAAATATA+TGG - chr3.3:94889276-94889295 MS.gene064894:intron 20.0%
!!! GCATAGTTTTTTTTTTAGTA+TGG - chr3.3:94886125-94886144 MS.gene064894:intron 20.0%
!!! TTTTTAAAGGTTTAACCTTA+AGG + chr3.3:94888396-94888415 None:intergenic 20.0%
! AAAAATATGATACCAACTTC+AGG + chr3.3:94888625-94888644 None:intergenic 25.0%
! AAAATATGATACCAACTTCA+GGG + chr3.3:94888624-94888643 None:intergenic 25.0%
! AAAATTGAAGGTTTATCTTC+TGG - chr3.3:94887749-94887768 MS.gene064894:intron 25.0%
! AAGATGGAAGATTAATAGTA+TGG - chr3.3:94885700-94885719 MS.gene064894:intron 25.0%
! ACTGATTAAATATATGGATG+TGG - chr3.3:94889282-94889301 MS.gene064894:intron 25.0%
! AGATCTATATGAAAATCAGT+TGG - chr3.3:94886102-94886121 MS.gene064894:intron 25.0%
! AGTATATTAAATCTCAGACT+TGG - chr3.3:94887858-94887877 MS.gene064894:CDS 25.0%
! ATACTCCTAGTCTATATTAA+TGG + chr3.3:94887843-94887862 None:intergenic 25.0%
! ATGTGACAATTAAAAAGGAA+CGG + chr3.3:94886942-94886961 None:intergenic 25.0%
! CAAAAAATTTACCACTAACT+TGG + chr3.3:94888581-94888600 None:intergenic 25.0%
! CGTAAAATTGAAGTTAGTTA+CGG + chr3.3:94885362-94885381 None:intergenic 25.0%
! CTAATGCTTCATTTCATTAA+GGG - chr3.3:94885397-94885416 MS.gene064894:intron 25.0%
! CTGTATTTACTGAATGATAA+TGG - chr3.3:94888902-94888921 MS.gene064894:intron 25.0%
! GATCTATATGAAAATCAGTT+GGG - chr3.3:94886103-94886122 MS.gene064894:intron 25.0%
! GTCTGATACATAAAACTTAT+AGG - chr3.3:94888224-94888243 MS.gene064894:intron 25.0%
! TACTCCTAGTCTATATTAAT+GGG + chr3.3:94887842-94887861 None:intergenic 25.0%
! TAGTTTATAAGCTTTCCTTA+AGG - chr3.3:94888378-94888397 MS.gene064894:CDS 25.0%
! TCTCCACAATAAATAACTAA+GGG - chr3.3:94887088-94887107 MS.gene064894:intron 25.0%
! TTAAAGTAGTAACTTTGACT+TGG + chr3.3:94886884-94886903 None:intergenic 25.0%
! TTACCCTTAGTTATTTATTG+TGG + chr3.3:94887094-94887113 None:intergenic 25.0%
!! AATTTTACAGGTTTACTCAT+TGG - chr3.3:94885638-94885657 MS.gene064894:intron 25.0%
!! CGCATTCATTTAAATTTTAC+AGG - chr3.3:94885626-94885645 MS.gene064894:intron 25.0%
!! CGTAACTAACTTCAATTTTA+CGG - chr3.3:94885360-94885379 MS.gene064894:intron 25.0%
!! TGATCAAACATGTGTTTTAT+GGG - chr3.3:94885977-94885996 MS.gene064894:intron 25.0%
!! TTCATATTAACTCCTTTTAC+TGG + chr3.3:94887694-94887713 None:intergenic 25.0%
!!! ATTTTATTTCGAAAGGTAGT+TGG - chr3.3:94886736-94886755 MS.gene064894:intron 25.0%
!!! CAAGTTAGTGGTAAATTTTT+TGG - chr3.3:94888579-94888598 MS.gene064894:CDS 25.0%
!!! GATTGAACTTTTAAAGAACT+AGG - chr3.3:94888346-94888365 MS.gene064894:CDS 25.0%
!!! GGTTGAGATTTTTCTTATTT+TGG - chr3.3:94887770-94887789 MS.gene064894:intron 25.0%
!!! TATTTTGAAGGGAAAATTGA+AGG - chr3.3:94887737-94887756 MS.gene064894:intron 25.0%
!!! TTCTTATTTTGGAAAAAGAC+AGG - chr3.3:94887781-94887800 MS.gene064894:intron 25.0%
AAATAGAACAAACACTGTCA+AGG + chr3.3:94885827-94885846 None:intergenic 30.0%
AACTCCAAAATGTTTGTATC+TGG - chr3.3:94886209-94886228 MS.gene064894:CDS 30.0%
AACTCCCATTAATATAGACT+AGG - chr3.3:94887835-94887854 MS.gene064894:CDS 30.0%
AAGTGACACTTAAAAAGGAA+CGG - chr3.3:94887189-94887208 MS.gene064894:intron 30.0%
AAGTTGGGACACAAATTTAA+AGG - chr3.3:94888186-94888205 MS.gene064894:intron 30.0%
AATCTTCTGGTCATAATACT+GGG - chr3.3:94888548-94888567 MS.gene064894:CDS 30.0%
ACTGAACACAAATTAATGGT+TGG + chr3.3:94885331-94885350 None:intergenic 30.0%
AGGTTATGTGTGATATAGTA+GGG - chr3.3:94888244-94888263 MS.gene064894:intron 30.0%
ATAGAAACTAAACATGCTGT+TGG + chr3.3:94887392-94887411 None:intergenic 30.0%
ATATAAGGGAATTGCTGTAT+TGG - chr3.3:94885516-94885535 MS.gene064894:intron 30.0%
ATGGGAATCTAAATGTTTCA+AGG - chr3.3:94885874-94885893 MS.gene064894:intron 30.0%
ATTGAGTCAATGTTGTTAGT+TGG + chr3.3:94889034-94889053 None:intergenic 30.0%
CAAGAGCAAGTACAAATAAA+TGG + chr3.3:94887993-94888012 None:intergenic 30.0%
CTCATCATGATTAATAGACT+CGG + chr3.3:94887514-94887533 None:intergenic 30.0%
CTCTCCACAATAAATAACTA+AGG - chr3.3:94887087-94887106 MS.gene064894:intron 30.0%
CTGAACTGAACACAAATTAA+TGG + chr3.3:94885335-94885354 None:intergenic 30.0%
CTTATTGCTGGATATACAAA+TGG - chr3.3:94886494-94886513 MS.gene064894:intron 30.0%
GCTAATGCTTCATTTCATTA+AGG - chr3.3:94885396-94885415 MS.gene064894:intron 30.0%
GCTGATTATATACTTGAAGT+TGG + chr3.3:94886409-94886428 None:intergenic 30.0%
TAGGTTATGTGTGATATAGT+AGG - chr3.3:94888243-94888262 MS.gene064894:intron 30.0%
TAGTCTATATTAATGGGAGT+TGG + chr3.3:94887836-94887855 None:intergenic 30.0%
TATAAAAGCTCCACATCAAA+AGG + chr3.3:94887605-94887624 None:intergenic 30.0%
TATAAGGGAATTGCTGTATT+GGG - chr3.3:94885517-94885536 MS.gene064894:intron 30.0%
TCCAAAAGTGACACTTAAAA+AGG - chr3.3:94887184-94887203 MS.gene064894:intron 30.0%
TTACTTCTACATGCGATTTA+GGG - chr3.3:94887432-94887451 MS.gene064894:intron 30.0%
TTGAAGCTAACTTCCAAAAT+TGG + chr3.3:94888278-94888297 None:intergenic 30.0%
TTGCTTCTTCATTTGATTGT+AGG - chr3.3:94888072-94888091 MS.gene064894:CDS 30.0%
TTTACTTCTACATGCGATTT+AGG - chr3.3:94887431-94887450 MS.gene064894:intron 30.0%
TTTCCTGATGGAAATAGATT+TGG - chr3.3:94886332-94886351 MS.gene064894:intron 30.0%
! ACACTTTTGGCAAAGATAAT+TGG - chr3.3:94886651-94886670 MS.gene064894:intron 30.0%
! AGAACCAGATACAAACATTT+TGG + chr3.3:94886216-94886235 None:intergenic 30.0%
! CTATGTTTGGGATACTTTAT+TGG - chr3.3:94886523-94886542 MS.gene064894:intron 30.0%
! GGAGGTAGTATTTTCTATAT+GGG + chr3.3:94886921-94886940 None:intergenic 30.0%
! GTGATCAAACATGTGTTTTA+TGG - chr3.3:94885976-94885995 MS.gene064894:intron 30.0%
! TACTATGTTTGCAACACTTT+TGG - chr3.3:94886638-94886657 MS.gene064894:intron 30.0%
! TAGAAATGTCGAAAGCATAA+TGG + chr3.3:94887471-94887490 None:intergenic 30.0%
! TTTGTTATAAAAGAGAGGGA+AGG + chr3.3:94889063-94889082 None:intergenic 30.0%
!! AATGATAATGGTGAGCTAAA+AGG - chr3.3:94888914-94888933 MS.gene064894:intron 30.0%
!! ATCCTAAAGGAAGTATGTTT+TGG + chr3.3:94888506-94888525 None:intergenic 30.0%
!! TACTTCCTTTAGGATTGTTA+AGG - chr3.3:94888511-94888530 MS.gene064894:CDS 30.0%
!! TTGGGAGATTTTATTTCGAA+AGG - chr3.3:94886729-94886748 MS.gene064894:intron 30.0%
!!! AGATACAAACATTTTGGAGT+TGG + chr3.3:94886210-94886229 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCACTTT+TGG + chr3.3:94887188-94887207 None:intergenic 30.0%
AAATGGCGATTGCTATGTTT+GGG - chr3.3:94886511-94886530 MS.gene064894:intron 35.0%
AAGGTCCTTAACAATCCTAA+AGG + chr3.3:94888519-94888538 None:intergenic 35.0%
AATAAGAAGTCTTCCGGATA+TGG + chr3.3:94886480-94886499 None:intergenic 35.0%
AATGTTTCAAGGATGCTTAG+TGG - chr3.3:94885885-94885904 MS.gene064894:intron 35.0%
ACTCTCAGCATTTCCATTAA+TGG - chr3.3:94886182-94886201 MS.gene064894:CDS 35.0%
AGATTGTTTGACATTAGGAC+TGG - chr3.3:94886380-94886399 MS.gene064894:intron 35.0%
AGTTCTACAGCAAAGGATAT+CGG + chr3.3:94885203-94885222 None:intergenic 35.0%
AGTTTCGTCAATTGTGTTGA+GGG + chr3.3:94888762-94888781 None:intergenic 35.0%
ATCATGATTAATAGACTCGG+AGG + chr3.3:94887511-94887530 None:intergenic 35.0%
ATCTCTTCAAAACTCTCATG+AGG - chr3.3:94888111-94888130 MS.gene064894:CDS 35.0%
ATCTTAATTCACCCACTGAT+AGG - chr3.3:94885850-94885869 MS.gene064894:intron 35.0%
ATTGTTAGTGCATCTCAAGA+TGG - chr3.3:94885684-94885703 MS.gene064894:intron 35.0%
CAATCCTACAATCATTCTAG+TGG + chr3.3:94888331-94888350 None:intergenic 35.0%
CATGTTAGACAAACCCATAT+AGG + chr3.3:94886775-94886794 None:intergenic 35.0%
CCAGAAGATTCATTTATGCA+AGG + chr3.3:94888538-94888557 None:intergenic 35.0%
CCTTGCATAAATGAATCTTC+TGG - chr3.3:94888535-94888554 MS.gene064894:CDS 35.0%
CTCCAAAACATACTTCCTTT+AGG - chr3.3:94888501-94888520 MS.gene064894:CDS 35.0%
CTTCTTCATTTGATTGTAGG+TGG - chr3.3:94888075-94888094 MS.gene064894:CDS 35.0%
CTTGCAGATTGTTTGACATT+AGG - chr3.3:94886375-94886394 MS.gene064894:intron 35.0%
GAAGACACTCACTTAATTAC+TGG - chr3.3:94885948-94885967 MS.gene064894:intron 35.0%
GAATCTTCTGGTCATAATAC+TGG - chr3.3:94888547-94888566 MS.gene064894:CDS 35.0%
GCTTTCGACATTTCTATATG+TGG - chr3.3:94887475-94887494 MS.gene064894:intron 35.0%
GGTTATGTGTGATATAGTAG+GGG - chr3.3:94888245-94888264 MS.gene064894:intron 35.0%
GTTATGTGTGATATAGTAGG+GGG - chr3.3:94888246-94888265 MS.gene064894:intron 35.0%
GTTCCAAATCTATTTCCATC+AGG + chr3.3:94886338-94886357 None:intergenic 35.0%
TACAGGTTTACTCATTGGAT+TGG - chr3.3:94885643-94885662 MS.gene064894:intron 35.0%
TACCACGATGTGTTAAATTG+AGG + chr3.3:94885266-94885285 None:intergenic 35.0%
TACTTCTACATGCGATTTAG+GGG - chr3.3:94887433-94887452 MS.gene064894:intron 35.0%
TACTTGCATCTTGCAGATAT+GGG - chr3.3:94889361-94889380 MS.gene064894:CDS 35.0%
TACTTGCTCTTGTACTTATG+TGG - chr3.3:94888001-94888020 MS.gene064894:CDS 35.0%
TATAAAGCTTCCTTGTGCAT+GGG - chr3.3:94885752-94885771 MS.gene064894:intron 35.0%
TATCTGTATCAAGAAGAGAG+AGG + chr3.3:94885048-94885067 None:intergenic 35.0%
TCATTTCTCTTTGTAGTTGC+TGG - chr3.3:94885133-94885152 MS.gene064894:intron 35.0%
TCTCTTCAAAACTCTCATGA+GGG - chr3.3:94888112-94888131 MS.gene064894:CDS 35.0%
TCTGTCAAATTCTTTCCTGA+TGG - chr3.3:94886320-94886339 MS.gene064894:intron 35.0%
TCTTAATTCACCCACTGATA+GGG - chr3.3:94885851-94885870 MS.gene064894:intron 35.0%
TGACAATTAAAAAGGAACGG+AGG + chr3.3:94886939-94886958 None:intergenic 35.0%
TGAGCTAAAAGGTTCTACTA+TGG - chr3.3:94888925-94888944 MS.gene064894:intron 35.0%
TGCTTTAGTGTGTCCTATAT+GGG - chr3.3:94886759-94886778 MS.gene064894:intron 35.0%
TTAATCATGATGAGCTCACT+AGG - chr3.3:94887520-94887539 MS.gene064894:intron 35.0%
TTACTGACAATAGTTGCACT+AGG + chr3.3:94888032-94888051 None:intergenic 35.0%
TTACTTGCATCTTGCAGATA+TGG - chr3.3:94889360-94889379 MS.gene064894:CDS 35.0%
TTCCTCAATTTAACACATCG+TGG - chr3.3:94885261-94885280 MS.gene064894:intron 35.0%
TTCGACATTTCTATATGTGG+TGG - chr3.3:94887478-94887497 MS.gene064894:intron 35.0%
TTTAACCTGAAATGACAGCA+GGG - chr3.3:94886682-94886701 MS.gene064894:intron 35.0%
TTTGAAGAGATCCTAGATTC+AGG + chr3.3:94888102-94888121 None:intergenic 35.0%
TTTGGAAAAAGACAGGAGAA+GGG - chr3.3:94887788-94887807 MS.gene064894:intron 35.0%
! CGGAGGTAGTATTTTCTATA+TGG + chr3.3:94886922-94886941 None:intergenic 35.0%
! CTAGAAGATTCTAGAAGAGA+GGG + chr3.3:94889127-94889146 None:intergenic 35.0%
! GATGGAAATAGATTTGGAAC+TGG - chr3.3:94886338-94886357 MS.gene064894:intron 35.0%
! GCTTTATAGCATGAGTTTTC+TGG + chr3.3:94885740-94885759 None:intergenic 35.0%
! GTTTTATGGGATATTACCAC+TGG - chr3.3:94885990-94886009 MS.gene064894:intron 35.0%
! TATCACAATGCCTTTTGATG+TGG - chr3.3:94887592-94887611 MS.gene064894:intron 35.0%
! TTGGAAGTTAGCTTCAATGT+TGG - chr3.3:94888281-94888300 MS.gene064894:intron 35.0%
! TTGGGATACTTTATTGGCTA+AGG - chr3.3:94886529-94886548 MS.gene064894:intron 35.0%
! TTTGGAGTTGGATCCATTAA+TGG + chr3.3:94886198-94886217 None:intergenic 35.0%
! TTTTACTGGCCCATAAAACA+AGG + chr3.3:94887680-94887699 None:intergenic 35.0%
!! ACTCACTTAATTACTGGTTC+TGG - chr3.3:94885954-94885973 MS.gene064894:intron 35.0%
!! TTCTAGAATCTTCTAGCATG+TGG - chr3.3:94889131-94889150 MS.gene064894:CDS 35.0%
!! TTGTTTTATGGGCCAGTAAA+AGG - chr3.3:94887679-94887698 MS.gene064894:intron 35.0%
!! TTTTGGAAAAAGACAGGAGA+AGG - chr3.3:94887787-94887806 MS.gene064894:intron 35.0%
!!! TGCCTAAGACCTTGTTTTAT+GGG - chr3.3:94887668-94887687 MS.gene064894:intron 35.0%
!!! TTGCCTAAGACCTTGTTTTA+TGG - chr3.3:94887667-94887686 MS.gene064894:intron 35.0%
AAACCTTTCCAGTATGACCT+TGG + chr3.3:94885228-94885247 None:intergenic 40.0%
AGAATGTGTCCAATCGTTTG+AGG + chr3.3:94888787-94888806 None:intergenic 40.0%
ATCTTGCAGATATGGGCATT+TGG - chr3.3:94889368-94889387 MS.gene064894:CDS 40.0%
ATGCAACAGATTGACCAGTT+GGG + chr3.3:94885797-94885816 None:intergenic 40.0%
ATTAAGTGAGTGTCTTCACC+TGG + chr3.3:94885945-94885964 None:intergenic 40.0%
CAAATGGCGATTGCTATGTT+TGG - chr3.3:94886510-94886529 MS.gene064894:intron 40.0%
CCTAGAATTGTCTCACTGAT+AGG - chr3.3:94888660-94888679 MS.gene064894:CDS 40.0%
CCTATCAGTGAGACAATTCT+AGG + chr3.3:94888663-94888682 None:intergenic 40.0%
CTATAAAGCTTCCTTGTGCA+TGG - chr3.3:94885751-94885770 MS.gene064894:intron 40.0%
CTCCAAAAACAGATGTTCGA+AGG + chr3.3:94886016-94886035 None:intergenic 40.0%
GACACTTAAAAAGGAACGGA+GGG - chr3.3:94887193-94887212 MS.gene064894:intron 40.0%
GACATACTGCAGATGTACTT+AGG - chr3.3:94886051-94886070 MS.gene064894:intron 40.0%
GAGTTTCGTCAATTGTGTTG+AGG + chr3.3:94888763-94888782 None:intergenic 40.0%
GATGCATTGGAAGCAAGATT+GGG + chr3.3:94888819-94888838 None:intergenic 40.0%
GCTAAAAGGTTCTACTATGG+TGG - chr3.3:94888928-94888947 MS.gene064894:intron 40.0%
GTCAATGTTGTTAGTTGGAG+AGG + chr3.3:94889029-94889048 None:intergenic 40.0%
GTGCTTTAGTGTGTCCTATA+TGG - chr3.3:94886758-94886777 MS.gene064894:intron 40.0%
GTTTAACCTGAAATGACAGC+AGG - chr3.3:94886681-94886700 MS.gene064894:intron 40.0%
TACGCCACTAGAATGATTGT+AGG - chr3.3:94888324-94888343 MS.gene064894:CDS 40.0%
TAGTAAGTGATAAGACACCG+AGG + chr3.3:94889161-94889180 None:intergenic 40.0%
TCATCCTCGGATGTATTCAA+TGG - chr3.3:94888846-94888865 MS.gene064894:intron 40.0%
TCATCTTGTCAGTATGTTCC+AGG - chr3.3:94885924-94885943 MS.gene064894:intron 40.0%
TCCAGCAATAAGAAGTCTTC+CGG + chr3.3:94886486-94886505 None:intergenic 40.0%
TCCATTGCATTCTCCATATC+CGG - chr3.3:94886464-94886483 MS.gene064894:intron 40.0%
TGACACTTAAAAAGGAACGG+AGG - chr3.3:94887192-94887211 MS.gene064894:intron 40.0%
TGCTTTGTGTACAGGAAGTT+GGG - chr3.3:94888171-94888190 MS.gene064894:intron 40.0%
TTTGGAGGTGAATTTCAGTC+TGG - chr3.3:94886029-94886048 MS.gene064894:intron 40.0%
! AAGGCACATTCTAGAAGAGA+GGG - chr3.3:94888693-94888712 MS.gene064894:CDS 40.0%
! AGGATGCTTAGTGGACATAA+AGG - chr3.3:94885894-94885913 MS.gene064894:intron 40.0%
! GCTAGAAGATTCTAGAAGAG+AGG + chr3.3:94889128-94889147 None:intergenic 40.0%
!! ACGTTCTCTGAGATTGTTGA+CGG + chr3.3:94885011-94885030 None:intergenic 40.0%
!! ATTCTAGGACAAAACAGCTG+AGG + chr3.3:94888648-94888667 None:intergenic 40.0%
!! TAGTTAGGAGTATTGTGCTC+TGG + chr3.3:94888998-94889017 None:intergenic 40.0%
!!! CTTCGAACATCTGTTTTTGG+AGG - chr3.3:94886014-94886033 MS.gene064894:intron 40.0%
AAGGGAGGCTGAAAAAGAGT+GGG - chr3.3:94887806-94887825 MS.gene064894:intron 45.0%
AATTCACCCACTGATAGGGA+TGG - chr3.3:94885855-94885874 MS.gene064894:intron 45.0%
ACACAGCAGTGACAACGAAA+TGG - chr3.3:94886430-94886449 MS.gene064894:intron 45.0%
ACTGATAGGACATCTAGGCA+AGG - chr3.3:94888674-94888693 MS.gene064894:CDS 45.0%
ACTGGTCAATCTGTTGCATG+CGG - chr3.3:94885798-94885817 MS.gene064894:intron 45.0%
AGAACGTCACATAGCTGCAA+CGG - chr3.3:94884982-94885001 MS.gene064894:intron 45.0%
AGAACTCTCCAAGGTCATAC+TGG - chr3.3:94885217-94885236 MS.gene064894:intron 45.0%
AGATTCCCATCCCTATCAGT+GGG + chr3.3:94885864-94885883 None:intergenic 45.0%
ATCAGCAGACAAACCCAAAC+AGG + chr3.3:94888146-94888165 None:intergenic 45.0%
ATCATGTTCTGCCCTGAAGT+TGG - chr3.3:94888610-94888629 MS.gene064894:CDS 45.0%
ATCGGTGGGACCAAAAGTAA+CGG + chr3.3:94885185-94885204 None:intergenic 45.0%
ATCTTGCTTCCAATGCATCC+AGG - chr3.3:94888820-94888839 MS.gene064894:intron 45.0%
ATGTGTGATATAGTAGGGGG+TGG - chr3.3:94888249-94888268 MS.gene064894:intron 45.0%
ATTCACCCACTGATAGGGAT+GGG - chr3.3:94885856-94885875 MS.gene064894:intron 45.0%
CATGCAACAGATTGACCAGT+TGG + chr3.3:94885798-94885817 None:intergenic 45.0%
CATGCCATTGAATACATCCG+AGG + chr3.3:94888853-94888872 None:intergenic 45.0%
CTACAGCAAAGGATATCGGT+GGG + chr3.3:94885199-94885218 None:intergenic 45.0%
CTTGGAGAGTTCTACAGCAA+AGG + chr3.3:94885210-94885229 None:intergenic 45.0%
GAGCAGTACGGACATTTCAT+GGG - chr3.3:94886279-94886298 MS.gene064894:intron 45.0%
GCTGGTTATGCAAAGTCTCA+AGG - chr3.3:94885151-94885170 MS.gene064894:intron 45.0%
GGAGAGGTTTCTCTCTAGTT+AGG + chr3.3:94889013-94889032 None:intergenic 45.0%
GGATATGGAGAATGCAATGG+AGG + chr3.3:94886465-94886484 None:intergenic 45.0%
GGATGCATTGGAAGCAAGAT+TGG + chr3.3:94888820-94888839 None:intergenic 45.0%
GGCCCATAAAACAAGGTCTT+AGG + chr3.3:94887673-94887692 None:intergenic 45.0%
GTCTCACTGATAGGACATCT+AGG - chr3.3:94888669-94888688 MS.gene064894:CDS 45.0%
GTGCTTTGTGTACAGGAAGT+TGG - chr3.3:94888170-94888189 MS.gene064894:intron 45.0%
TAGATTCCCATCCCTATCAG+TGG + chr3.3:94885865-94885884 None:intergenic 45.0%
TAGTAATCCCCAGTTCACTG+TGG + chr3.3:94886623-94886642 None:intergenic 45.0%
TCCGGAAGACTTCTTATTGC+TGG - chr3.3:94886482-94886501 MS.gene064894:intron 45.0%
TCCGGATATGGAGAATGCAA+TGG + chr3.3:94886468-94886487 None:intergenic 45.0%
TCTACAGCAAAGGATATCGG+TGG + chr3.3:94885200-94885219 None:intergenic 45.0%
TCTCCAAGGTCATACTGGAA+AGG - chr3.3:94885222-94885241 MS.gene064894:intron 45.0%
TGCAACAGATTGACCAGTTG+GGG + chr3.3:94885796-94885815 None:intergenic 45.0%
TGCAGATATGGGCATTTGGA+GGG - chr3.3:94889372-94889391 MS.gene064894:CDS 45.0%
TTCAAAACTCTCATGAGGGC+AGG - chr3.3:94888116-94888135 MS.gene064894:CDS 45.0%
TTGCAGATATGGGCATTTGG+AGG - chr3.3:94889371-94889390 MS.gene064894:CDS 45.0%
TTGTAGGTGGTCCTGAATCT+AGG - chr3.3:94888088-94888107 MS.gene064894:CDS 45.0%
! AAACACCCTGCTGTCATTTC+AGG + chr3.3:94886690-94886709 None:intergenic 45.0%
! CAAGGCACATTCTAGAAGAG+AGG - chr3.3:94888692-94888711 MS.gene064894:CDS 45.0%
! CTTTGCTGTAGAACTCTCCA+AGG - chr3.3:94885208-94885227 MS.gene064894:intron 45.0%
! GGCCTTCGAACATCTGTTTT+TGG - chr3.3:94886011-94886030 MS.gene064894:intron 45.0%
! TAAGAGTACGCACGCAATTG+CGG - chr3.3:94885429-94885448 MS.gene064894:intron 45.0%
! TAGGGGGTGGTTACCAATTT+TGG - chr3.3:94888262-94888281 MS.gene064894:intron 45.0%
! TGGGACTTGTTCCAAGTTAG+TGG - chr3.3:94888567-94888586 MS.gene064894:CDS 45.0%
! TGTTTGGGTTTGTCTGCTGA+TGG - chr3.3:94888145-94888164 MS.gene064894:CDS 45.0%
! TTTGGAACTGGCTCAGAAGA+TGG - chr3.3:94886350-94886369 MS.gene064894:intron 45.0%
!! GATGGAAGTGCTTTGTGTAC+AGG - chr3.3:94888163-94888182 MS.gene064894:CDS 45.0%
!! GGTAGAACTCCCGTTACTTT+TGG - chr3.3:94885172-94885191 MS.gene064894:intron 45.0%
!! TAGGAGTATTGTGCTCTGGT+AGG + chr3.3:94888994-94889013 None:intergenic 45.0%
AACAGATGTTCGAAGGCCAG+TGG + chr3.3:94886009-94886028 None:intergenic 50.0%
ACATGTGCTTTCTCCCCAAC+TGG - chr3.3:94885780-94885799 MS.gene064894:intron 50.0%
ACGGACATTTCATGGGCATG+AGG - chr3.3:94886286-94886305 MS.gene064894:intron 50.0%
AGCCTCATACCACAGTGAAC+TGG - chr3.3:94886611-94886630 MS.gene064894:intron 50.0%
CATGTCATGACCCATGCACA+AGG + chr3.3:94885765-94885784 None:intergenic 50.0%
CCTCATACCACAGTGAACTG+GGG - chr3.3:94886613-94886632 MS.gene064894:intron 50.0%
CGAAACTCGCCTCAAACGAT+TGG - chr3.3:94888775-94888794 MS.gene064894:intron 50.0%
CGAGCAGTACGGACATTTCA+TGG - chr3.3:94886278-94886297 MS.gene064894:intron 50.0%
CGGACATTTCATGGGCATGA+GGG - chr3.3:94886287-94886306 MS.gene064894:intron 50.0%
GAAGGGAGGCTGAAAAAGAG+TGG - chr3.3:94887805-94887824 MS.gene064894:intron 50.0%
GATGGCATGCGAGCTTATAG+AGG - chr3.3:94888457-94888476 MS.gene064894:CDS 50.0%
GCCTCATACCACAGTGAACT+GGG - chr3.3:94886612-94886631 MS.gene064894:intron 50.0%
GGAAAAAGACAGGAGAAGGG+AGG - chr3.3:94887791-94887810 MS.gene064894:intron 50.0%
TCCACATACATCAGCGTTCC+TGG + chr3.3:94889258-94889277 None:intergenic 50.0%
TCCAGGAACGCTGATGTATG+TGG - chr3.3:94889254-94889273 MS.gene064894:intron 50.0%
TCGGTGGGACCAAAAGTAAC+GGG + chr3.3:94885184-94885203 None:intergenic 50.0%
TGCGATTTAGGGGTGAGTTC+TGG - chr3.3:94887443-94887462 MS.gene064894:intron 50.0%
! TATGGGCATTTGGAGGGCAT+AGG - chr3.3:94889378-94889397 MS.gene064894:CDS 50.0%
! TTCTAGCATGTGGCTTGCCT+CGG - chr3.3:94889141-94889160 MS.gene064894:CDS 50.0%
!! TGGTAGGAGTGTTCTCACTC+TGG + chr3.3:94888978-94888997 None:intergenic 50.0%
CACACGAGTGTCCCACAATC+TGG + chr3.3:94886252-94886271 None:intergenic 55.0%
CAGATTGTGGGACACTCGTG+TGG - chr3.3:94886250-94886269 MS.gene064894:CDS 55.0%
CCCCAGTTCACTGTGGTATG+AGG + chr3.3:94886616-94886635 None:intergenic 55.0%
CGATGCGACTGCCAGATTGT+GGG - chr3.3:94886238-94886257 MS.gene064894:CDS 55.0%
GAGGGCAGGATCACCTGTTT+GGG - chr3.3:94888130-94888149 MS.gene064894:CDS 55.0%
GGATGAACGCCTGGATGCAT+TGG + chr3.3:94888832-94888851 None:intergenic 55.0%
GGTCAATCTGTTGCATGCGG+TGG - chr3.3:94885801-94885820 MS.gene064894:intron 55.0%
GTGTGGCAAGTCGAGCAGTA+CGG - chr3.3:94886267-94886286 MS.gene064894:intron 55.0%
TACATCCGAGGATGAACGCC+TGG + chr3.3:94888841-94888860 None:intergenic 55.0%
TGAGGGCAGGATCACCTGTT+TGG - chr3.3:94888129-94888148 MS.gene064894:CDS 55.0%
TGCATCCAGGCGTTCATCCT+CGG - chr3.3:94888833-94888852 MS.gene064894:intron 55.0%
! GGCATTTGGAGGGCATAGGA+AGG - chr3.3:94889382-94889401 MS.gene064894:CDS 55.0%
GCGATGCGACTGCCAGATTG+TGG - chr3.3:94886237-94886256 MS.gene064894:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 94884962 94889412 94884962 ID=MS.gene064894
chr3.3 mRNA 94884962 94889412 94884962 ID=MS.gene064894.t1;Parent=MS.gene064894
chr3.3 exon 94889307 94889412 94889307 ID=MS.gene064894.t1.exon1;Parent=MS.gene064894.t1
chr3.3 CDS 94889307 94889412 94889307 ID=cds.MS.gene064894.t1;Parent=MS.gene064894.t1
chr3.3 exon 94889131 94889225 94889131 ID=MS.gene064894.t1.exon2;Parent=MS.gene064894.t1
chr3.3 CDS 94889131 94889225 94889131 ID=cds.MS.gene064894.t1;Parent=MS.gene064894.t1
chr3.3 exon 94888302 94888726 94888302 ID=MS.gene064894.t1.exon3;Parent=MS.gene064894.t1
chr3.3 CDS 94888302 94888726 94888302 ID=cds.MS.gene064894.t1;Parent=MS.gene064894.t1
chr3.3 exon 94887824 94888184 94887824 ID=MS.gene064894.t1.exon4;Parent=MS.gene064894.t1
chr3.3 CDS 94887824 94888184 94887824 ID=cds.MS.gene064894.t1;Parent=MS.gene064894.t1
chr3.3 exon 94886167 94886280 94886167 ID=MS.gene064894.t1.exon5;Parent=MS.gene064894.t1
chr3.3 CDS 94886167 94886280 94886167 ID=cds.MS.gene064894.t1;Parent=MS.gene064894.t1
chr3.3 exon 94884962 94884997 94884962 ID=MS.gene064894.t1.exon6;Parent=MS.gene064894.t1
chr3.3 CDS 94884962 94884997 94884962 ID=cds.MS.gene064894.t1;Parent=MS.gene064894.t1
Gene Sequence

>MS.gene064894

ATGTCAGTTACGGAGCTGAAAGAACGTCACATAGCTGCAACGGAAACCGTCAACAATCTCAGAGAACGTCTGAAGCAAAGACGCCTCTCTCTTCTTGATACAGATAGTGAGTTTCATTTCATAATTCATTCATTAGATCTATCTATTTATTTTCTAACTCAACAAACAATTTCATTTCTCTTTGTAGTTGCTGGTTATGCAAAGTCTCAAGGTAGAACTCCCGTTACTTTTGGTCCCACCGATATCCTTTGCTGTAGAACTCTCCAAGGTCATACTGGAAAGGTTTATTCTATTCTTTTTTCCTCAATTTAACACATCGTGGTAGCTACAATTATTATTATTATTCTAATTTCTTCTTAATCGGTACCAACCATTAATTTGTGTTCAGTTCAGTTGACCGTAACTAACTTCAATTTTACGGTACTCAACTCAACGCTAATGCTTCATTTCATTAAGGGAACATAATGTAAGAGTACGCACGCAATTGCGGTTTGTTTAGTTGTTGTTATTATTATTATTAAGCTAAAATCGGTACTTAGATCTTTGTTGCTATAATATAAGGGAATTGCTGTATTGGGTTTCGAGTTAGATTCATTTACTTCTATCATCACTTATAGCAATTTTTTTGTTAGTTGTGAGTGAGATATGCACGTGCAATGAATAACGCATTCATTTAAATTTTACAGGTTTACTCATTGGATTGGACTTCAGAAAAGAATCGAATTGTTAGTGCATCTCAAGATGGAAGATTAATAGTATGGAATGCTCTAACAAGCCAGAAAACTCATGCTATAAAGCTTCCTTGTGCATGGGTCATGACATGTGCTTTCTCCCCAACTGGTCAATCTGTTGCATGCGGTGGCCTTGACAGTGTTTGTTCTATTTTCAATCTTAATTCACCCACTGATAGGGATGGGAATCTAAATGTTTCAAGGATGCTTAGTGGACATAAAGGTTATGTTTCATCTTGTCAGTATGTTCCAGGTGAAGACACTCACTTAATTACTGGTTCTGGTGATCAAACATGTGTTTTATGGGATATTACCACTGGCCTTCGAACATCTGTTTTTGGAGGTGAATTTCAGTCTGGACATACTGCAGATGTACTTAGGTATTGTTTAAGTTGTTTTAATAGTAGCGAGATCTATATGAAAATCAGTTGGGCATAGTTTTTTTTTTAGTATGGAATCATCGCTAAGAAATATTTCTTTTCTTTGCTCACTCTCAGCATTTCCATTAATGGATCCAACTCCAAAATGTTTGTATCTGGTTCTTGCGATGCGACTGCCAGATTGTGGGACACTCGTGTGGCAAGTCGAGCAGTACGGACATTTCATGGGCATGAGGGTGATGTTAATTCTGTCAAATTCTTTCCTGATGGAAATAGATTTGGAACTGGCTCAGAAGATGGAACTTGCAGATTGTTTGACATTAGGACTGGACACCAACTTCAAGTATATAATCAGCAACACAGCAGTGACAACGAAATGGCACATGTGACCTCCATTGCATTCTCCATATCCGGAAGACTTCTTATTGCTGGATATACAAATGGCGATTGCTATGTTTGGGATACTTTATTGGCTAAGGTAATTGTTGCTTTAGTGTGATTATGTAAAACAAAAGTAGGGCGTTTTCTTTCTACTCATAGCCTCATACCACAGTGAACTGGGGATTACTATGTTTGCAACACTTTTGGCAAAGATAATTGGTTTTTCAGTTTAACCTGAAATGACAGCAGGGTGTTTTATTTCTACTTATTATATTTTGGGAGATTTTATTTCGAAAGGTAGTTGGTGCTTTAGTGTGTCCTATATGGGTTTGTCTAACATGTTAAAACAACTAAAAGCAGTAATTTTTTATTGAAAACAACAATTATTTATTAAAAAGCGACACATTTAATATAAAATGCACAAGTTCCAAGTCAAAGTTACTACTTTAAATTTCTTAACATGACCCATATAGAAAATACTACCTCCGTTCCTTTTTAATTGTCACATTTTGACATTTTACACATACCAAGACAATAAATAAATGTTACTACTTTTGATACAATTTTGATACAATAATTTATACTTTTACCATAATGACCTTATTCATTTAATATCTTCTTTCATATACTTCTCTCTCCACAATAAATAACTAAGGGTAATAATGGTAAAACAACATTTAATGTTGCATTGAACTTTGTAAGTGACAGTTAATTTGAAACAAAAATTTTCTCCAAAAGTGACACTTAAAAAGGAACGGAGGGAGTAAGATTCTTTGTGACGCTTAATAATTTTTTATTGAAAACAACTAAATTTCTTAACAATTATTTATTAAAAAGCGACACATTTAATATAAAATGCACAAGTTCCAAGTCAAAGTTACTACTTTAAATTTCTTAACATGACCCATATAGAAAATAAGATTCTGTGACACATACCAACAGCATGTTTAGTTTCTATTAATTAACTAATTGTTTGCTTTACTTCTACATGCGATTTAGGGGTGAGTTCTGGTTCCATTATGCTTTCGACATTTCTATATGTGGTGGAATTGTGCCTCCGAGTCTATTAATCATGATGAGCTCACTAGGCATTATCTTGTATATAAATTGGCTCGTAACTTTCTGATATTCTTTTTGCTATCACAATGCCTTTTGATGTGGAGCTTTTATACCGCTGTTTATTTTATTTTGTACTTCTATTTGTCTCAAGTCATTGCCTAAGACCTTGTTTTATGGGCCAGTAAAAGGAGTTAATATGAATTATTTGAAGGAAATTTTTTTCTTATTTTGAAGGGAAAATTGAAGGTTTATCTTCTGGTTGAGATTTTTCTTATTTTGGAAAAAGACAGGAGAAGGGAGGCTGAAAAAGAGTGGGTGTTCCAACTCCCATTAATATAGACTAGGAGTATATTAAATCTCAGACTTGGCAAACTTGCCATATTTTTTGAAAAAAGAAAAACTGAACAAAAACAAAATGCAATTCTGTCTTGTAACATCTAATCATAGCATGATATTTTCTGACGCTGCTTTCTCTTTCCATTTATTTGTACTTGCTCTTGTACTTATGTGGTTGTGCCTAGTGCAACTATTGTCAGTAAGACTGACTAACTGACTATACTTGCTTCTTCATTTGATTGTAGGTGGTCCTGAATCTAGGATCTCTTCAAAACTCTCATGAGGGCAGGATCACCTGTTTGGGTTTGTCTGCTGATGGAAGTGCTTTGTGTACAGGAAGTTGGGACACAAATTTAAAGGTGAGCAAACATTTTAGTCTGATACATAAAACTTATAGGTTATGTGTGATATAGTAGGGGGTGGTTACCAATTTTGGAAGTTAGCTTCAATGTTGGTGATATTTTTCATGTTTTTTTACGCCACTAGAATGATTGTAGGATTGAACTTTTAAAGAACTAGGCTTTTGTGTTAGTTTATAAGCTTTCCTTAAGGTTAAACCTTTAAAAAGAATTAGGAATTAAGCAAAAATAAAAAAGCATTATATTTATGATGGCATGCGAGCTTATAGAGGTTTAACATGTTCTGAGTTGAACTCCAAAACATACTTCCTTTAGGATTGTTAAGGACCTTGCATAAATGAATCTTCTGGTCATAATACTGGGACTTGTTCCAAGTTAGTGGTAAATTTTTTGGTTAGAAAAATCATGTTCTGCCCTGAAGTTGGTATCATATTTTTCCTCAGCTGTTTTGTCCTAGAATTGTCTCACTGATAGGACATCTAGGCAAGGCACATTCTAGAAGAGAGGGAATATGAGTTAGAACTCAGTTTCTCTGTGTTTCATCATCACTGCCCTCAACACAATTGACGAAACTCGCCTCAAACGATTGGACACATTCTTCAAATCTTCCCAATCTTGCTTCCAATGCATCCAGGCGTTCATCCTCGGATGTATTCAATGGCATGATAGAACTTGTAAAATCAAGATAACAAAACTGTATTTACTGAATGATAATGGTGAGCTAAAAGGTTCTACTATGGTGGAATAACATAAAACAAAAGGATAAACCAGAGTGAGAACACTCCTACCAGAGCACAATACTCCTAACTAGAGAGAAACCTCTCCAACTAACAACATTGACTCAATCACTAGCCTTCCCTCTCTTTTATAACAAAAATATCTCTAAAATAAAGAACTTTGCTAACTAACTCATATTCCCTCTCTTCTAGAATCTTCTAGCATGTGGCTTGCCTCGGTGTCTTATCACTTACTATACTAACATTTTTTTTTCTTTGATAATATTACTATACTATGGTAACCAATGCATATTTGTATCAAATAATATATCCAGGAACGCTGATGTATGTGGATTTCACTGATTAAATATATGGATGTGGTATTTTCTGAGTGCCGTCTATCTTGAAAAAATGTTTAGGTGTTAGTTTGACATAATTACTTGCATCTTGCAGATATGGGCATTTGGAGGGCATAGGAAGGTGATTTGA
Protein sequence

>MS.gene064894.t1

MSVTELKERHIAATETVNNLRERLKQRRLSLLDTDIAGYAKSQGRTPVTFGPTDILCCRTLQGHTGKVYSLDWTSEKNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPTGQSVACGGLDSVCSIFNLNSPTDRDGNLNVSRMLSGHKGYVSSCQYVPGEDTHLITGSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSISINGSNSKMFVSGSCDATARLWDTRVASRAVRTFHGHEGDVNSVKFFPDGNRFGTGSEDGTCRLFDIRTGHQLQVYNQQHSSDNEMAHVTSIAFSISGRLLIAGYTNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGHRKVI