Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005236.t1 | XP_024638392.1 | 97.2 | 1126 | 28 | 2 | 1 | 1123 | 1 | 1125 | 0.00E+00 | 2107 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005236.t1 | Q6A333 | 43.7 | 1180 | 478 | 31 | 1 | 1123 | 1 | 1051 | 1.2e-211 | 738.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005236.t1 | A0A072VM38 | 96.3 | 1136 | 28 | 3 | 1 | 1123 | 1 | 1135 | 0.0e+00 | 2098.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene005236.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene055583 | MS.gene005236 | PPI |
| MS.gene005236 | MS.gene44107 | PPI |
| MS.gene005237 | MS.gene005236 | PPI |
| MS.gene005236 | MS.gene055582 | PPI |
| MS.gene056045 | MS.gene005236 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005236.t1 | MTR_1g083040 | 96.303 | 1136 | 28 | 3 | 1 | 1123 | 1 | 1135 | 0.0 | 2256 |
| MS.gene005236.t1 | MTR_1g083040 | 95.335 | 1136 | 28 | 4 | 1 | 1123 | 1 | 1124 | 0.0 | 2226 |
| MS.gene005236.t1 | MTR_1g083040 | 95.158 | 1136 | 28 | 4 | 1 | 1123 | 1 | 1122 | 0.0 | 2221 |
| MS.gene005236.t1 | MTR_1g083040 | 94.190 | 1136 | 28 | 5 | 1 | 1123 | 1 | 1111 | 0.0 | 2192 |
| MS.gene005236.t1 | MTR_1g083040 | 95.599 | 818 | 22 | 3 | 1 | 805 | 1 | 817 | 0.0 | 1599 |
| MS.gene005236.t1 | MTR_4g119390 | 43.719 | 1210 | 547 | 32 | 1 | 1123 | 1 | 1163 | 0.0 | 788 |
| MS.gene005236.t1 | MTR_4g119390 | 43.393 | 1226 | 563 | 35 | 1 | 1123 | 1 | 1198 | 0.0 | 778 |
| MS.gene005236.t1 | MTR_1g492660 | 40.816 | 98 | 26 | 2 | 22 | 114 | 91 | 161 | 2.47e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005236.t1 | AT3G21430 | 42.857 | 1183 | 561 | 26 | 1 | 1123 | 1 | 1128 | 0.0 | 790 |
| MS.gene005236.t1 | AT3G21430 | 42.857 | 1183 | 561 | 26 | 1 | 1123 | 1 | 1128 | 0.0 | 790 |
| MS.gene005236.t1 | AT3G21430 | 42.713 | 1187 | 561 | 26 | 1 | 1123 | 1 | 1132 | 0.0 | 788 |
| MS.gene005236.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 668 |
| MS.gene005236.t1 | AT3G05380 | 53.179 | 173 | 73 | 4 | 952 | 1123 | 887 | 1052 | 2.55e-44 | 175 |
| MS.gene005236.t1 | AT3G05380 | 46.820 | 912 | 397 | 25 | 1 | 855 | 1 | 881 | 0.0 | 668 |
| MS.gene005236.t1 | AT3G05380 | 53.179 | 173 | 73 | 4 | 952 | 1123 | 886 | 1051 | 2.54e-44 | 175 |
| MS.gene005236.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 668 |
| MS.gene005236.t1 | AT3G05380 | 53.179 | 173 | 73 | 4 | 952 | 1123 | 887 | 1052 | 2.55e-44 | 175 |
| MS.gene005236.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 668 |
| MS.gene005236.t1 | AT3G05380 | 53.179 | 173 | 73 | 4 | 952 | 1123 | 887 | 1052 | 2.55e-44 | 175 |
| MS.gene005236.t1 | AT3G05380 | 44.952 | 832 | 374 | 22 | 80 | 855 | 1 | 804 | 0.0 | 578 |
| MS.gene005236.t1 | AT3G05380 | 53.179 | 173 | 73 | 4 | 952 | 1123 | 809 | 974 | 1.86e-44 | 175 |
| MS.gene005236.t1 | AT5G27610 | 42.329 | 893 | 362 | 27 | 1 | 836 | 1 | 797 | 1.20e-178 | 549 |
| MS.gene005236.t1 | AT5G27610 | 43.011 | 186 | 99 | 3 | 938 | 1123 | 792 | 970 | 8.89e-32 | 135 |
Find 241 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATGAATCTCTCTTGTTT+TGG | 0.149228 | 1.4:-67107393 | None:intergenic |
| TAGCTGTTTGTCATCTTATT+TGG | 0.158728 | 1.4:+67106932 | MS.gene005236:CDS |
| GAAGAAGTTGTCTAATAAAT+TGG | 0.161696 | 1.4:+67101681 | MS.gene005236:CDS |
| ATTAATGGAAATTCAAGTTT+TGG | 0.224585 | 1.4:+67108115 | MS.gene005236:CDS |
| CGTCTACTTCTTTGTTTAGT+TGG | 0.235444 | 1.4:-67106701 | None:intergenic |
| TTCTTTGAAGGAAAATAATA+TGG | 0.244666 | 1.4:+67104200 | MS.gene005236:CDS |
| TTAAACATTCTATGCCATTT+TGG | 0.249911 | 1.4:-67109451 | None:intergenic |
| ATTTGAATTTCTCTGTAAAT+AGG | 0.271279 | 1.4:-67110844 | None:intergenic |
| AGCACAGAGGTTACCAATAT+TGG | 0.278915 | 1.4:-67109020 | None:intergenic |
| GTACTCCACAAATTCTCTTT+TGG | 0.279992 | 1.4:-67107012 | None:intergenic |
| AGTATAGAACCACATATTAA+TGG | 0.291083 | 1.4:+67108100 | MS.gene005236:CDS |
| TTCGAGTATCGCACGGTTGC+AGG | 0.302283 | 1.4:-67110816 | None:intergenic |
| TGATGAATTCAACTCCTAAC+TGG | 0.311762 | 1.4:-67107469 | None:intergenic |
| TTGACCGTCTTTATTTGTTT+TGG | 0.312836 | 1.4:-67106593 | None:intergenic |
| AAAGCGTGCTCTAGATAAAA+AGG | 0.313137 | 1.4:+67109120 | MS.gene005236:CDS |
| GTCACTTCCCAGGCCAATAT+TGG | 0.328742 | 1.4:+67109007 | MS.gene005236:CDS |
| TCAGAATCTTTGTGCAGTTT+CGG | 0.329467 | 1.4:-67110373 | None:intergenic |
| AATGCTGGATGCTGCATTTC+AGG | 0.332422 | 1.4:+67109818 | MS.gene005236:CDS |
| TACTAGTTCCTTGATGGATA+TGG | 0.336948 | 1.4:+67104041 | MS.gene005236:CDS |
| TAGAGATACTAGTTCCTTGA+TGG | 0.342926 | 1.4:+67104035 | MS.gene005236:CDS |
| TTGAGTGGAGTGTCATAAAA+AGG | 0.349014 | 1.4:+67107078 | MS.gene005236:CDS |
| GGCATATTGGAAAACCAAAA+TGG | 0.350448 | 1.4:+67109437 | MS.gene005236:CDS |
| AAAGATGCTATTACGAAGAT+TGG | 0.351072 | 1.4:+67110199 | MS.gene005236:CDS |
| ATGGCCATCAAAATTTGCTT+TGG | 0.355548 | 1.4:-67109700 | None:intergenic |
| AGCCTCGTGCTGTTGGAAAA+AGG | 0.356186 | 1.4:+67103510 | MS.gene005236:CDS |
| TTCCATTTGCTGATAAGATA+TGG | 0.360437 | 1.4:+67105637 | MS.gene005236:CDS |
| TAGAGAGAGGCAACCATCAC+TGG | 0.361044 | 1.4:-67102830 | None:intergenic |
| CACGAGCTGTCTCTGACATT+TGG | 0.361609 | 1.4:-67103930 | None:intergenic |
| AGATGGACTTCCAACAGATT+TGG | 0.362036 | 1.4:+67107328 | MS.gene005236:CDS |
| GGCTACATTAACCATGATTC+AGG | 0.369905 | 1.4:+67110441 | MS.gene005236:CDS |
| CTTGGATGCTTTGCAAACTT+TGG | 0.371982 | 1.4:+67104471 | MS.gene005236:CDS |
| ACTCTCAAAAGAAAGATGAT+AGG | 0.373372 | 1.4:+67103555 | MS.gene005236:CDS |
| ACTGTCATTGAAATCATTAA+AGG | 0.374232 | 1.4:+67109774 | MS.gene005236:CDS |
| GAAAGCAGGGGAGCTGAAAA+TGG | 0.374259 | 1.4:+67104003 | MS.gene005236:CDS |
| GCTTCGGGCATATTATCTAA+TGG | 0.375299 | 1.4:-67108037 | None:intergenic |
| ATCTGCCTCCTCAAAGCTTC+GGG | 0.377312 | 1.4:-67108052 | None:intergenic |
| TAGGGATGAGAGCTAAAATC+TGG | 0.378728 | 1.4:-67110888 | None:intergenic |
| ATGGCTTGTTGATGTTGATT+CGG | 0.382537 | 1.4:-67105505 | None:intergenic |
| GAGGGGACAGCTTCTGTTGT+AGG | 0.386769 | 1.4:+67102275 | MS.gene005236:CDS |
| GAGCTTCGAAATGCTAATAA+TGG | 0.388504 | 1.4:+67109416 | MS.gene005236:CDS |
| AAATGCTAATAATGGCATAT+TGG | 0.389348 | 1.4:+67109424 | MS.gene005236:CDS |
| CTGAAGAAAAGACGCATTGA+TGG | 0.393599 | 1.4:+67102853 | MS.gene005236:CDS |
| TGGCCATCAAAATTTGCTTT+GGG | 0.396560 | 1.4:-67109699 | None:intergenic |
| TCAATCTTTCTCCCTTCAAC+TGG | 0.396796 | 1.4:-67105452 | None:intergenic |
| AGCTTGAAGTCTACTGTTGA+TGG | 0.408517 | 1.4:+67103605 | MS.gene005236:CDS |
| CAGTTCGATCGTCCCCAGTT+AGG | 0.409738 | 1.4:+67107455 | MS.gene005236:CDS |
| GTCTTTAATTACCTGAATCA+TGG | 0.409754 | 1.4:-67110452 | None:intergenic |
| TGGCTTGTTGATGTTGATTC+GGG | 0.410687 | 1.4:-67105504 | None:intergenic |
| ACACTTCTAGATTTCCTTGT+CGG | 0.411329 | 1.4:-67100908 | None:intergenic |
| GAGAAGATATAATTCTAAGT+AGG | 0.419321 | 1.4:-67110907 | None:intergenic |
| AATCTGCCTCCTCAAAGCTT+CGG | 0.421550 | 1.4:-67108053 | None:intergenic |
| TTCCATATCTTATCAGCAAA+TGG | 0.431294 | 1.4:-67105639 | None:intergenic |
| TACGAAGATTGGGCAGGCAT+TGG | 0.432224 | 1.4:+67110210 | MS.gene005236:CDS |
| ACACGTTGTCCAACATATAA+TGG | 0.433131 | 1.4:-67107356 | None:intergenic |
| GAGGCAACGCAATACCTATA+CGG | 0.433200 | 1.4:+67109650 | MS.gene005236:CDS |
| AAGAGCTTCCACCATTTCAA+TGG | 0.436695 | 1.4:-67101966 | None:intergenic |
| AAGAAGTTGTCTAATAAATT+GGG | 0.437836 | 1.4:+67101682 | MS.gene005236:CDS |
| CATGAAGTGATGAGCTCAAA+TGG | 0.441310 | 1.4:-67110415 | None:intergenic |
| CCGTCTTCTGAAGTAGAATC+TGG | 0.447167 | 1.4:+67104514 | MS.gene005236:CDS |
| AAGCTCTTTACAATATGAAT+CGG | 0.447230 | 1.4:+67101981 | MS.gene005236:CDS |
| ACAGAAAGCATGGTAAAGAT+TGG | 0.448397 | 1.4:+67101749 | MS.gene005236:CDS |
| GAGCCAGCTCCATCTTTCTC+AGG | 0.448770 | 1.4:-67100965 | None:intergenic |
| CTTGAATTTCCATTAATATG+TGG | 0.449653 | 1.4:-67108109 | None:intergenic |
| ACTTGTTTCTGCAGTTCCCT+TGG | 0.450351 | 1.4:+67107197 | MS.gene005236:intron |
| CTGATACCATGCTTCAATTG+AGG | 0.455978 | 1.4:+67109631 | MS.gene005236:CDS |
| CACTCAACACGAGTTAGCCT+TGG | 0.457331 | 1.4:-67107062 | None:intergenic |
| CATTGCATGTGCCTGTAGCC+TGG | 0.458879 | 1.4:-67109799 | None:intergenic |
| GTTTGCCAAAAGAGAATTTG+TGG | 0.458990 | 1.4:+67107007 | MS.gene005236:CDS |
| AATATCTGAGCCACATCAGC+TGG | 0.464887 | 1.4:-67110775 | None:intergenic |
| CACAGAAGCATCGAGAAACT+TGG | 0.464933 | 1.4:-67103953 | None:intergenic |
| AGAAGATATAATTCTAAGTA+GGG | 0.465953 | 1.4:-67110906 | None:intergenic |
| AAAGAAAGAGTGGAAAATGT+TGG | 0.469922 | 1.4:+67104114 | MS.gene005236:CDS |
| TGCTCAGAGCCGGGATAGAA+TGG | 0.470304 | 1.4:+67103742 | MS.gene005236:CDS |
| TGGAAGGTAGTCTTGAAAGC+AGG | 0.470580 | 1.4:+67103989 | MS.gene005236:CDS |
| AGAATCACGTCTCCAGTTGA+AGG | 0.473764 | 1.4:+67105440 | MS.gene005236:intron |
| TTTCTCGATGCTTCTGTGGA+TGG | 0.475165 | 1.4:+67103958 | MS.gene005236:CDS |
| TATCACAGGCAACCTGTACT+TGG | 0.476810 | 1.4:-67110260 | None:intergenic |
| AGTTCTCTCCTGCTCAGAGC+CGG | 0.477289 | 1.4:+67103732 | MS.gene005236:CDS |
| ATGGAAGGAACGAGCACTGC+TGG | 0.477901 | 1.4:+67104060 | MS.gene005236:CDS |
| TGGAAGTAACAGACTGAGAC+TGG | 0.479884 | 1.4:-67102810 | None:intergenic |
| GATATTTCTCCTGAGAAAGA+TGG | 0.480654 | 1.4:+67100956 | MS.gene005236:CDS |
| ATAATATGCCCGAAGCTTTG+AGG | 0.481922 | 1.4:+67108044 | MS.gene005236:CDS |
| CTTAACTAAAGCACTTGAAG+AGG | 0.482863 | 1.4:-67108176 | None:intergenic |
| GAGCACTGCTGGAGTTCCTA+AGG | 0.483645 | 1.4:+67104071 | MS.gene005236:CDS |
| CATTAAAGGATCCAGGCTAC+AGG | 0.484028 | 1.4:+67109788 | MS.gene005236:CDS |
| ATTCTATCCCGGCTCTGAGC+AGG | 0.485679 | 1.4:-67103740 | None:intergenic |
| TGGCAGAGAGGTTTCCGTAT+AGG | 0.486136 | 1.4:-67109664 | None:intergenic |
| GCTACAGGCACATGCAATGC+TGG | 0.487202 | 1.4:+67109803 | MS.gene005236:CDS |
| GTTGAAGGGAGAAAGATTGA+TGG | 0.487498 | 1.4:+67105455 | MS.gene005236:CDS |
| TTGAAATCATTAAAGGATCC+AGG | 0.488460 | 1.4:+67109781 | MS.gene005236:CDS |
| AATGGTCTTGCCAAATCTGT+TGG | 0.489638 | 1.4:-67107338 | None:intergenic |
| CCTTTACTTAACGATGCATC+TGG | 0.490660 | 1.4:+67110349 | MS.gene005236:CDS |
| TTGGGATCTCAGTGGAGCAA+GGG | 0.491437 | 1.4:+67101700 | MS.gene005236:CDS |
| GCATGCAGCGGCACTGAAGA+AGG | 0.491447 | 1.4:+67104165 | MS.gene005236:CDS |
| AGAGGTTACCAATATTGGCC+TGG | 0.491630 | 1.4:-67109015 | None:intergenic |
| CATCTTATTTGGTTCGCAGA+TGG | 0.495359 | 1.4:+67106943 | MS.gene005236:CDS |
| GCACGCAGTAAAACCTCAAA+AGG | 0.495393 | 1.4:-67106617 | None:intergenic |
| AACAGATGAAATCCACGCCT+TGG | 0.497756 | 1.4:+67104453 | MS.gene005236:intron |
| GCACGGTTGCAGGCTGGTAA+CGG | 0.498043 | 1.4:-67110806 | None:intergenic |
| CAGAGAAATTCAAATGTGCA+TGG | 0.498649 | 1.4:+67110852 | MS.gene005236:CDS |
| GGTCTGCAGCCTCGTGCTGT+TGG | 0.500748 | 1.4:+67103503 | MS.gene005236:intron |
| ACGTAATAGATCCATTGAAA+TGG | 0.501185 | 1.4:+67101955 | MS.gene005236:CDS |
| GAACTAACTTCACTTAAAAG+TGG | 0.502840 | 1.4:-67106677 | None:intergenic |
| TAATAAGCACTCTACCCAAA+AGG | 0.509532 | 1.4:+67106793 | MS.gene005236:CDS |
| CAGTCTGTTACTTCCAGTGA+TGG | 0.510709 | 1.4:+67102817 | MS.gene005236:CDS |
| GACAGATCATTATAATGTCC+TGG | 0.510737 | 1.4:+67102313 | MS.gene005236:CDS |
| AGTACAGGTTGCCTGTGATA+AGG | 0.511473 | 1.4:+67110263 | MS.gene005236:CDS |
| CTCTCAAAAGAAAGATGATA+GGG | 0.511587 | 1.4:+67103556 | MS.gene005236:CDS |
| GAAGAGGGGCGTACCTTCAC+AGG | 0.513156 | 1.4:-67108160 | None:intergenic |
| AAGATGCTATTACGAAGATT+GGG | 0.513873 | 1.4:+67110200 | MS.gene005236:CDS |
| TTTGCTTTGGGCTTCATCCA+TGG | 0.515055 | 1.4:-67109687 | None:intergenic |
| GCTAAAGGAAGCCAGTGGAC+AGG | 0.515599 | 1.4:+67109520 | MS.gene005236:CDS |
| TGGTTCTATACTCGTAAAAG+AGG | 0.516423 | 1.4:-67108089 | None:intergenic |
| GTTCTCTCCTGCTCAGAGCC+GGG | 0.518889 | 1.4:+67103733 | MS.gene005236:CDS |
| CACGGTACTTGTAGAGCTAA+AGG | 0.519139 | 1.4:+67109505 | MS.gene005236:CDS |
| TACTTAAATCATGTTGGACT+AGG | 0.519442 | 1.4:+67107032 | MS.gene005236:CDS |
| AGGAAGAGAGTGATAGTGAA+AGG | 0.519581 | 1.4:+67102704 | MS.gene005236:intron |
| CATTATTCTGAGCTGCGGAC+TGG | 0.520480 | 1.4:+67107299 | MS.gene005236:CDS |
| AGCTCTTTACAATATGAATC+GGG | 0.520904 | 1.4:+67101982 | MS.gene005236:CDS |
| ATAGAACTATCCGACATACT+AGG | 0.521403 | 1.4:-67109732 | None:intergenic |
| GGAAGAGAGTGATAGTGAAA+GGG | 0.522040 | 1.4:+67102705 | MS.gene005236:intron |
| TTACAGAAAGAAAGAAAGAG+TGG | 0.522065 | 1.4:+67104104 | MS.gene005236:CDS |
| GTGGAGTACTTAAATCATGT+TGG | 0.522193 | 1.4:+67107026 | MS.gene005236:CDS |
| TTCTGTTCTCCTCTCCTATG+TGG | 0.525089 | 1.4:-67103710 | None:intergenic |
| TCAAGTGCTTTAGTTAAGCA+AGG | 0.526265 | 1.4:+67108181 | MS.gene005236:CDS |
| CAAAGTTTGCAAAGCATCCA+AGG | 0.526548 | 1.4:-67104470 | None:intergenic |
| GGAAATTATCAGCTTGATGA+CGG | 0.526857 | 1.4:+67104135 | MS.gene005236:CDS |
| GAAGCCACATGCCTGTCCAC+TGG | 0.527209 | 1.4:-67109531 | None:intergenic |
| ATATTATCTAATGGATTCAA+AGG | 0.530582 | 1.4:-67108028 | None:intergenic |
| GCAAAAGTCCACTGTGTCAA+AGG | 0.530832 | 1.4:+67105668 | MS.gene005236:CDS |
| GATGAATTCAACTCCTAACT+GGG | 0.531998 | 1.4:-67107468 | None:intergenic |
| TTGGCAAGACCATTATATGT+TGG | 0.532186 | 1.4:+67107347 | MS.gene005236:CDS |
| ATGTGGTGTCTGAGAAACTA+GGG | 0.533355 | 1.4:-67103693 | None:intergenic |
| ACAACAGAAGCTGTCCCCTC+TGG | 0.533993 | 1.4:-67102272 | None:intergenic |
| GACTTATCTTTACGCATGGA+TGG | 0.534395 | 1.4:-67106743 | None:intergenic |
| CACAGGCAACCTGTACTTGG+TGG | 0.535612 | 1.4:-67110257 | None:intergenic |
| ATAGTGCACTTGATTATCCA+TGG | 0.536074 | 1.4:+67106985 | MS.gene005236:CDS |
| ACTGAATTCTGCACTTGTCA+TGG | 0.538319 | 1.4:-67107436 | None:intergenic |
| CGGCATCATTAGAGATAGAT+CGG | 0.538917 | 1.4:-67104494 | None:intergenic |
| TGCTTTAGTTAAGCAAGGAA+AGG | 0.541102 | 1.4:+67108186 | MS.gene005236:CDS |
| GGAAGGTAGTCTTGAAAGCA+GGG | 0.541939 | 1.4:+67103990 | MS.gene005236:CDS |
| ACTCAACACGAGTTAGCCTT+GGG | 0.542670 | 1.4:-67107061 | None:intergenic |
| AGCAGTTGTCCACCAAGTAC+AGG | 0.544298 | 1.4:+67110248 | MS.gene005236:CDS |
| TGCTAACCATGTCACTTCCC+AGG | 0.548811 | 1.4:+67108997 | MS.gene005236:CDS |
| CTGCGGACTGGTATAAGAGA+TGG | 0.549190 | 1.4:+67107311 | MS.gene005236:CDS |
| TTAACTAAAGCACTTGAAGA+GGG | 0.552147 | 1.4:-67108175 | None:intergenic |
| ATAAGACTTATCTTTACGCA+TGG | 0.553936 | 1.4:-67106747 | None:intergenic |
| AGGTCTCAAGATCAAGTGAA+TGG | 0.554399 | 1.4:+67110283 | MS.gene005236:CDS |
| CGTTCCTTCCATATCCATCA+AGG | 0.554433 | 1.4:-67104049 | None:intergenic |
| TATGTGGTGTCTGAGAAACT+AGG | 0.554615 | 1.4:-67103694 | None:intergenic |
| CCAGATGCATCGTTAAGTAA+AGG | 0.554967 | 1.4:-67110349 | None:intergenic |
| AAAACCTGCGTGGTTTGCCA+AGG | 0.555120 | 1.4:-67107214 | None:intergenic |
| GAAGCTTTGAGGAGGCAGAT+TGG | 0.556916 | 1.4:+67108055 | MS.gene005236:CDS |
| GAATTTCTCTGTAAATAGGA+AGG | 0.557537 | 1.4:-67110840 | None:intergenic |
| TGCTATTACGAAGATTGGGC+AGG | 0.562780 | 1.4:+67110204 | MS.gene005236:CDS |
| GTTCTATGACACAAGAGTCT+AGG | 0.563001 | 1.4:+67109748 | MS.gene005236:CDS |
| ACTTCAGCTTAATGTCTCAA+AGG | 0.565165 | 1.4:+67102780 | MS.gene005236:CDS |
| ACATACTAGGAAGGTCATCA+TGG | 0.567760 | 1.4:-67109719 | None:intergenic |
| TTTGCAAAGCATCCAAGGCG+TGG | 0.570904 | 1.4:-67104465 | None:intergenic |
| GAGGTTACCAATATTGGCCT+GGG | 0.571947 | 1.4:-67109014 | None:intergenic |
| TTTGAAGGAAAATAATATGG+AGG | 0.574084 | 1.4:+67104203 | MS.gene005236:CDS |
| GCAATACCCTCCAGCTGATG+TGG | 0.575728 | 1.4:+67110765 | MS.gene005236:CDS |
| AGTATCGCACGGTTGCAGGC+TGG | 0.577322 | 1.4:-67110812 | None:intergenic |
| AGGGAGAGCAATGATGCACC+AGG | 0.581666 | 1.4:+67102724 | MS.gene005236:CDS |
| TGGGATCTCAGTGGAGCAAG+GGG | 0.581686 | 1.4:+67101701 | MS.gene005236:CDS |
| CACTTTACACGGTTGAGCAG+AGG | 0.582929 | 1.4:-67109050 | None:intergenic |
| GAATGTTTAAAAGATTCTGA+AGG | 0.583011 | 1.4:+67109464 | MS.gene005236:CDS |
| ATTGGGATCTCAGTGGAGCA+AGG | 0.585319 | 1.4:+67101699 | MS.gene005236:CDS |
| CCAGATTCTACTTCAGAAGA+CGG | 0.586286 | 1.4:-67104514 | None:intergenic |
| TGGTCTCAAGCTACAAAGGA+AGG | 0.586757 | 1.4:+67110175 | MS.gene005236:CDS |
| GTTCCCTTGGCAAACCACGC+AGG | 0.587364 | 1.4:+67107210 | MS.gene005236:intron |
| AGAGAAATTCAAATGTGCAT+GGG | 0.587897 | 1.4:+67110853 | MS.gene005236:CDS |
| ACTTAAATCATGTTGGACTA+GGG | 0.588058 | 1.4:+67107033 | MS.gene005236:CDS |
| TATGAAGCATACAGAAAGCA+TGG | 0.589048 | 1.4:+67101739 | MS.gene005236:CDS |
| TGATGTTGCATCACTTTACA+CGG | 0.589402 | 1.4:-67109061 | None:intergenic |
| GTAACAGACTGAGACTGGAC+AGG | 0.589416 | 1.4:-67102805 | None:intergenic |
| CAAGGCTAACTCGTGTTGAG+TGG | 0.590048 | 1.4:+67107063 | MS.gene005236:CDS |
| TATTGGCCTGGGAAGTGACA+TGG | 0.591157 | 1.4:-67109003 | None:intergenic |
| TAATAGATCCATTGAAATGG+TGG | 0.592802 | 1.4:+67101958 | MS.gene005236:CDS |
| AAAACAAGAGAGATTCATGA+TGG | 0.598180 | 1.4:+67107395 | MS.gene005236:CDS |
| TCTCCTGAGAAAGATGGAGC+TGG | 0.598280 | 1.4:+67100962 | MS.gene005236:CDS |
| TGATCTTGAGACCTTATCAC+AGG | 0.600930 | 1.4:-67110274 | None:intergenic |
| GCATGGTAAAGATTGGAAGA+AGG | 0.602065 | 1.4:+67101756 | MS.gene005236:CDS |
| CTTCATCCATGGTGGCAGAG+AGG | 0.603440 | 1.4:-67109676 | None:intergenic |
| ATCTGAGCCACATCAGCTGG+AGG | 0.605296 | 1.4:-67110772 | None:intergenic |
| AAACCTGCGTGGTTTGCCAA+GGG | 0.605604 | 1.4:-67107213 | None:intergenic |
| AGGGATGAGAGCTAAAATCT+GGG | 0.606466 | 1.4:-67110887 | None:intergenic |
| CAAGTTTCTCGATGCTTCTG+TGG | 0.606617 | 1.4:+67103954 | MS.gene005236:CDS |
| GGCATGGTCTCAAGCTACAA+AGG | 0.609766 | 1.4:+67110171 | MS.gene005236:intron |
| CGGAAACCTCTCTGCCACCA+TGG | 0.610537 | 1.4:+67109670 | MS.gene005236:CDS |
| AATCAACATCAACAAGCCAT+AGG | 0.617002 | 1.4:+67105508 | MS.gene005236:CDS |
| GCGTTGCCTCAATTGAAGCA+TGG | 0.617652 | 1.4:-67109637 | None:intergenic |
| GAATCACGTCTCCAGTTGAA+GGG | 0.618260 | 1.4:+67105441 | MS.gene005236:intron |
| AATCTAGAAGTGTGAATAAG+CGG | 0.619158 | 1.4:+67100918 | MS.gene005236:CDS |
| GCATATCTATCTCTACCAGA+GGG | 0.620511 | 1.4:+67102257 | MS.gene005236:CDS |
| AGTTGAATACCATTCTATCC+CGG | 0.621666 | 1.4:-67103751 | None:intergenic |
| AGCACTGCTGGAGTTCCTAA+GGG | 0.622103 | 1.4:+67104072 | MS.gene005236:CDS |
| TTACTGCGTGCTGATCAGAA+AGG | 0.622646 | 1.4:+67106629 | MS.gene005236:CDS |
| ACTTGCAGAGTTGTACTGAA+CGG | 0.624851 | 1.4:+67110743 | MS.gene005236:intron |
| TGACAGAATTACCTCCAAAG+AGG | 0.625229 | 1.4:-67104287 | None:intergenic |
| GGCATATCTATCTCTACCAG+AGG | 0.628948 | 1.4:+67102256 | MS.gene005236:intron |
| TGATGACCTTCCTAGTATGT+CGG | 0.630040 | 1.4:+67109722 | MS.gene005236:CDS |
| TGAGCTCATCACTTCATGTG+TGG | 0.634529 | 1.4:+67110420 | MS.gene005236:CDS |
| TCTGAGCCACATCAGCTGGA+GGG | 0.645393 | 1.4:-67110771 | None:intergenic |
| TTTCAAGAAGCATTATGCCA+CGG | 0.645708 | 1.4:+67109487 | MS.gene005236:CDS |
| AACTATCCGACATACTAGGA+AGG | 0.646168 | 1.4:-67109728 | None:intergenic |
| GCTTTGGGCTTCATCCATGG+TGG | 0.646183 | 1.4:-67109684 | None:intergenic |
| AAGGATCAATGGCACCGACA+AGG | 0.648478 | 1.4:+67100894 | None:intergenic |
| TTAAGCAGGGCTTCACAAAG+AGG | 0.648843 | 1.4:+67103662 | MS.gene005236:CDS |
| GGAAGGTTTCGAGTATCGCA+CGG | 0.648915 | 1.4:-67110823 | None:intergenic |
| GACGGAGGAGAAGCATGCAG+CGG | 0.650843 | 1.4:+67104153 | MS.gene005236:CDS |
| AGTTCCTTGATGGATATGGA+AGG | 0.652302 | 1.4:+67104045 | MS.gene005236:CDS |
| AGCAGGGCTTCACAAAGAGG+AGG | 0.653229 | 1.4:+67103665 | MS.gene005236:CDS |
| GTTAGGAGTTGAATTCATCA+CGG | 0.655789 | 1.4:+67107472 | MS.gene005236:CDS |
| CTCACCAAAACAAATAAAGA+CGG | 0.659655 | 1.4:+67106589 | MS.gene005236:CDS |
| TTGGACTAGGGAATATCCCA+AGG | 0.661354 | 1.4:+67107045 | MS.gene005236:CDS |
| AATTATCAGCTTGATGACGG+AGG | 0.663340 | 1.4:+67104138 | MS.gene005236:CDS |
| TATACTTGCCTTTGACACAG+TGG | 0.663441 | 1.4:-67105676 | None:intergenic |
| AATTCTCCCCAACAAGTCAG+CGG | 0.664103 | 1.4:+67104247 | MS.gene005236:CDS |
| CTAATAAATTGGGATCTCAG+TGG | 0.665494 | 1.4:+67101692 | MS.gene005236:CDS |
| TAACTAAAGCACTTGAAGAG+GGG | 0.666484 | 1.4:-67108174 | None:intergenic |
| AATGCATGCTTCACCTGTGA+AGG | 0.667655 | 1.4:+67108147 | MS.gene005236:CDS |
| TAGTTTCTCAGACACCACAT+AGG | 0.669340 | 1.4:+67103696 | MS.gene005236:CDS |
| AATGGATCTATTACGTACAG+CGG | 0.676588 | 1.4:-67101948 | None:intergenic |
| CTTTAGCTCTACAAGTACCG+TGG | 0.680662 | 1.4:-67109504 | None:intergenic |
| CAGAGGCAGCTTGAGCACAG+AGG | 0.682588 | 1.4:-67109033 | None:intergenic |
| TCTCAGACACCACATAGGAG+AGG | 0.683376 | 1.4:+67103701 | MS.gene005236:CDS |
| GAGTGGTAAACTGGGACTCG+TGG | 0.685072 | 1.4:-67103536 | None:intergenic |
| ACTGCTGGAGTTCCTAAGGG+AGG | 0.691043 | 1.4:+67104075 | MS.gene005236:CDS |
| GAAGGTAGTCTTGAAAGCAG+GGG | 0.695243 | 1.4:+67103991 | MS.gene005236:CDS |
| ATATGCCCGAAGCTTTGAGG+AGG | 0.696255 | 1.4:+67108047 | MS.gene005236:CDS |
| GGAAACATTATTCTGAGCTG+CGG | 0.699382 | 1.4:+67107294 | MS.gene005236:CDS |
| AAGTGTTCCGAAAACCTGCG+TGG | 0.699640 | 1.4:-67107224 | None:intergenic |
| TGTGGTGTCTGAGAAACTAG+GGG | 0.699681 | 1.4:-67103692 | None:intergenic |
| AAATAAAGTTAAAATTCGTG+CGG | 0.700583 | 1.4:+67105533 | MS.gene005236:CDS |
| AACAGTATCGAGAATCAGTG+AGG | 0.709059 | 1.4:+67107273 | MS.gene005236:CDS |
| GATCTGTCATCATTGCAATG+AGG | 0.714057 | 1.4:-67102298 | None:intergenic |
| GTAGAGCTAAAGGAAGCCAG+TGG | 0.716008 | 1.4:+67109515 | MS.gene005236:CDS |
| GGGATCTCAGTGGAGCAAGG+GGG | 0.723954 | 1.4:+67101702 | MS.gene005236:CDS |
| ATGAATTCAACTCCTAACTG+GGG | 0.726781 | 1.4:-67107467 | None:intergenic |
| CATATCTATCTCTACCAGAG+GGG | 0.741033 | 1.4:+67102258 | MS.gene005236:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 67100902 | 67110915 | 67100902 | ID=MS.gene005236 |
| chr1.4 | mRNA | 67100902 | 67110915 | 67100902 | ID=MS.gene005236.t1;Parent=MS.gene005236 |
| chr1.4 | exon | 67100902 | 67101006 | 67100902 | ID=MS.gene005236.t1.exon1;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67100902 | 67101006 | 67100902 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67101679 | 67101777 | 67101679 | ID=MS.gene005236.t1.exon2;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67101679 | 67101777 | 67101679 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67101941 | 67102003 | 67101941 | ID=MS.gene005236.t1.exon3;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67101941 | 67102003 | 67101941 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67102257 | 67102334 | 67102257 | ID=MS.gene005236.t1.exon4;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67102257 | 67102334 | 67102257 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67102706 | 67102874 | 67102706 | ID=MS.gene005236.t1.exon5;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67102706 | 67102874 | 67102706 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67103504 | 67103763 | 67103504 | ID=MS.gene005236.t1.exon6;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67103504 | 67103763 | 67103504 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67103928 | 67104297 | 67103928 | ID=MS.gene005236.t1.exon7;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67103928 | 67104297 | 67103928 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67104458 | 67104535 | 67104458 | ID=MS.gene005236.t1.exon8;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67104458 | 67104535 | 67104458 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67105442 | 67105689 | 67105442 | ID=MS.gene005236.t1.exon9;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67105442 | 67105689 | 67105442 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67106530 | 67106814 | 67106530 | ID=MS.gene005236.t1.exon10;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67106530 | 67106814 | 67106530 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67106921 | 67107099 | 67106921 | ID=MS.gene005236.t1.exon11;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67106921 | 67107099 | 67106921 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67107211 | 67107493 | 67107211 | ID=MS.gene005236.t1.exon12;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67107211 | 67107493 | 67107211 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67108013 | 67108207 | 67108013 | ID=MS.gene005236.t1.exon13;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67108013 | 67108207 | 67108013 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67108992 | 67109141 | 67108992 | ID=MS.gene005236.t1.exon14;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67108992 | 67109141 | 67108992 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67109401 | 67109541 | 67109401 | ID=MS.gene005236.t1.exon15;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67109401 | 67109541 | 67109401 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67109627 | 67109839 | 67109627 | ID=MS.gene005236.t1.exon16;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67109627 | 67109839 | 67109627 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67110172 | 67110462 | 67110172 | ID=MS.gene005236.t1.exon17;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67110172 | 67110462 | 67110172 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| chr1.4 | exon | 67110751 | 67110915 | 67110751 | ID=MS.gene005236.t1.exon18;Parent=MS.gene005236.t1 |
| chr1.4 | CDS | 67110751 | 67110915 | 67110751 | ID=cds.MS.gene005236.t1;Parent=MS.gene005236.t1 |
| Gene Sequence |
| Protein sequence |
