Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055582.t1 | XP_024638392.1 | 96.3 | 1062 | 35 | 2 | 1 | 1059 | 1 | 1061 | 0.00E+00 | 1963.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055582.t1 | Q6A333 | 41.4 | 1116 | 468 | 31 | 1 | 1059 | 1 | 987 | 2.1e-178 | 627.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055582.t1 | A0A072VM38 | 95.4 | 1072 | 35 | 3 | 1 | 1059 | 1 | 1071 | 0.0e+00 | 1955.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene055582.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052776 | MS.gene055582 | 0.831009 | 2.13E-55 | -1.69E-46 |
| MS.gene055582 | MS.gene056045 | 0.88441 | 1.96E-71 | -1.69E-46 |
| MS.gene055582 | MS.gene056181 | 0.810439 | 1.15E-50 | -1.69E-46 |
| MS.gene055582 | MS.gene06488 | 0.803769 | 2.98E-49 | -1.69E-46 |
| MS.gene055582 | MS.gene073390 | 0.800127 | 1.67E-48 | -1.69E-46 |
| MS.gene055582 | MS.gene24205 | 0.842185 | 3.02E-58 | -1.69E-46 |
| MS.gene055582 | MS.gene26396 | 0.809831 | 1.56E-50 | -1.69E-46 |
| MS.gene055582 | MS.gene27025 | 0.825865 | 3.71E-54 | -1.69E-46 |
| MS.gene055582 | MS.gene27287 | 0.838473 | 2.82E-57 | -1.69E-46 |
| MS.gene055582 | MS.gene30753 | 0.811319 | 7.43E-51 | -1.69E-46 |
| MS.gene055582 | MS.gene44107 | 0.887075 | 1.96E-72 | -1.69E-46 |
| MS.gene055582 | MS.gene47581 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene055582 | MS.gene51029 | 0.804832 | 1.79E-49 | -1.69E-46 |
| MS.gene055582 | MS.gene58134 | 0.813595 | 2.36E-51 | -1.69E-46 |
| MS.gene055582 | MS.gene58617 | 0.817871 | 2.63E-52 | -1.69E-46 |
| MS.gene055582 | MS.gene90747 | 0.831342 | 1.76E-55 | -1.69E-46 |
| MS.gene055582 | MS.gene96510 | 0.802827 | 4.66E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44107 | MS.gene055582 | PPI |
| MS.gene005237 | MS.gene055582 | PPI |
| MS.gene056045 | MS.gene055582 | PPI |
| MS.gene005236 | MS.gene055582 | PPI |
| MS.gene055583 | MS.gene055582 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055582.t1 | MTR_1g083040 | 95.429 | 1072 | 35 | 3 | 1 | 1059 | 1 | 1071 | 0.0 | 2102 |
| MS.gene055582.t1 | MTR_1g083040 | 94.403 | 1072 | 35 | 4 | 1 | 1059 | 1 | 1060 | 0.0 | 2071 |
| MS.gene055582.t1 | MTR_1g083040 | 94.216 | 1072 | 35 | 4 | 1 | 1059 | 1 | 1058 | 0.0 | 2066 |
| MS.gene055582.t1 | MTR_1g083040 | 93.190 | 1072 | 35 | 5 | 1 | 1059 | 1 | 1047 | 0.0 | 2036 |
| MS.gene055582.t1 | MTR_1g083040 | 95.599 | 818 | 22 | 3 | 1 | 805 | 1 | 817 | 0.0 | 1598 |
| MS.gene055582.t1 | MTR_4g119390 | 41.798 | 1146 | 533 | 31 | 1 | 1059 | 1 | 1099 | 0.0 | 680 |
| MS.gene055582.t1 | MTR_4g119390 | 41.480 | 1162 | 549 | 34 | 1 | 1059 | 1 | 1134 | 0.0 | 669 |
| MS.gene055582.t1 | MTR_1g492660 | 40.816 | 98 | 26 | 2 | 22 | 114 | 91 | 161 | 2.86e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055582.t1 | AT3G21430 | 42.640 | 1053 | 505 | 23 | 1 | 998 | 1 | 1009 | 0.0 | 685 |
| MS.gene055582.t1 | AT3G21430 | 42.640 | 1053 | 505 | 23 | 1 | 998 | 1 | 1009 | 0.0 | 685 |
| MS.gene055582.t1 | AT3G21430 | 42.479 | 1057 | 505 | 23 | 1 | 998 | 1 | 1013 | 0.0 | 684 |
| MS.gene055582.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 668 |
| MS.gene055582.t1 | AT3G05380 | 46.820 | 912 | 397 | 25 | 1 | 855 | 1 | 881 | 0.0 | 668 |
| MS.gene055582.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 668 |
| MS.gene055582.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 668 |
| MS.gene055582.t1 | AT3G05380 | 44.952 | 832 | 374 | 22 | 80 | 855 | 1 | 804 | 0.0 | 579 |
| MS.gene055582.t1 | AT5G27610 | 42.329 | 893 | 362 | 27 | 1 | 836 | 1 | 797 | 1.08e-179 | 550 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATGAATCTCTCTTGTTT+TGG | 0.149228 | 1.2:+59980669 | None:intergenic |
| TAGCTGTTTGTCATCTTATT+TGG | 0.158728 | 1.2:-59981130 | MS.gene055582:CDS |
| GAAGAAGTTGTCTAATAAAT+TGG | 0.161696 | 1.2:-59986381 | MS.gene055582:CDS |
| ATTAATGGAAATTCAAGTTT+TGG | 0.224585 | 1.2:-59979947 | MS.gene055582:CDS |
| CGTCTACTTCTTTGTTTAGT+TGG | 0.235444 | 1.2:+59981361 | None:intergenic |
| TTCTTTGAAGGAAAATAATA+TGG | 0.244666 | 1.2:-59983862 | MS.gene055582:CDS |
| TTAAACATTCTATGCCATTT+TGG | 0.249911 | 1.2:+59978611 | None:intergenic |
| AGCACAGAGGTTACCAATAT+TGG | 0.278915 | 1.2:+59979042 | None:intergenic |
| GTACTCCACAAATTCTCTTT+TGG | 0.279992 | 1.2:+59981050 | None:intergenic |
| AGTATAGAACCACATATTAA+TGG | 0.291083 | 1.2:-59979962 | MS.gene055582:CDS |
| TGATGAATTCAACTCCTAAC+TGG | 0.311762 | 1.2:+59980593 | None:intergenic |
| TTGACCGTCTTTATTTGTTT+TGG | 0.312836 | 1.2:+59981469 | None:intergenic |
| AAAGCGTGCTCTAGATAAAA+AGG | 0.313137 | 1.2:-59978942 | MS.gene055582:intron |
| GTCACTTCCCAGGCCAATAT+TGG | 0.328742 | 1.2:-59979055 | MS.gene055582:CDS |
| TCAGAATCTTTGTGCAGTTT+CGG | 0.329467 | 1.2:+59977688 | None:intergenic |
| AATGCTGGATGCTGCATTTC+AGG | 0.332422 | 1.2:-59978244 | MS.gene055582:intron |
| TACTAGTTCCTTGATGGATA+TGG | 0.336948 | 1.2:-59984021 | MS.gene055582:CDS |
| TAGAGATACTAGTTCCTTGA+TGG | 0.342926 | 1.2:-59984027 | MS.gene055582:CDS |
| TTGAGTGGAGTGTCATAAAA+AGG | 0.349014 | 1.2:-59980984 | MS.gene055582:intron |
| GGCATATTGGAAAACCAAAA+TGG | 0.350448 | 1.2:-59978625 | MS.gene055582:CDS |
| AAAGATGCTATTACGAAGAT+TGG | 0.351072 | 1.2:-59977862 | MS.gene055582:CDS |
| ATGGCCATCAAAATTTGCTT+TGG | 0.355548 | 1.2:+59978362 | None:intergenic |
| AGCCTCGTGCTGTTGGAAAA+AGG | 0.356186 | 1.2:-59984552 | MS.gene055582:CDS |
| TTCCATTTGCTGATAAGATA+TGG | 0.360437 | 1.2:-59982425 | MS.gene055582:CDS |
| TAGAGAGAGGCAACCATCAC+TGG | 0.361044 | 1.2:+59985232 | None:intergenic |
| CACGAGCTGTCTCTGACATT+TGG | 0.361609 | 1.2:+59984132 | None:intergenic |
| AGATGGACTTCCAACAGATT+TGG | 0.362036 | 1.2:-59980734 | MS.gene055582:CDS |
| CTTGGATGCTTTGCAAACTT+TGG | 0.371982 | 1.2:-59983591 | MS.gene055582:CDS |
| ACTCTCAAAAGAAAGATGAT+AGG | 0.373372 | 1.2:-59984507 | MS.gene055582:CDS |
| ACTGTCATTGAAATCATTAA+AGG | 0.374232 | 1.2:-59978288 | MS.gene055582:CDS |
| GAAAGCAGGGGAGCTGAAAA+TGG | 0.374259 | 1.2:-59984059 | MS.gene055582:CDS |
| GCTTCGGGCATATTATCTAA+TGG | 0.375299 | 1.2:+59980025 | None:intergenic |
| ATCTGCCTCCTCAAAGCTTC+GGG | 0.377312 | 1.2:+59980010 | None:intergenic |
| ATGGCTTGTTGATGTTGATT+CGG | 0.382537 | 1.2:+59982557 | None:intergenic |
| GAGGGGACAGCTTCTGTTGT+AGG | 0.386769 | 1.2:-59985787 | MS.gene055582:CDS |
| GAGCTTCGAAATGCTAATAA+TGG | 0.388504 | 1.2:-59978646 | MS.gene055582:CDS |
| AAATGCTAATAATGGCATAT+TGG | 0.389348 | 1.2:-59978638 | MS.gene055582:CDS |
| CTGAAGAAAAGACGCATTGA+TGG | 0.393599 | 1.2:-59985209 | MS.gene055582:intron |
| TGGCCATCAAAATTTGCTTT+GGG | 0.396560 | 1.2:+59978363 | None:intergenic |
| TCAATCTTTCTCCCTTCAAC+TGG | 0.396796 | 1.2:+59982610 | None:intergenic |
| AGCTTGAAGTCTACTGTTGA+TGG | 0.408517 | 1.2:-59984457 | MS.gene055582:CDS |
| CAGTTCGATCGTCCCCAGTT+AGG | 0.409738 | 1.2:-59980607 | MS.gene055582:CDS |
| TGGCTTGTTGATGTTGATTC+GGG | 0.410687 | 1.2:+59982558 | None:intergenic |
| ACACTTCTAGATTTCCTTGT+CGG | 0.411329 | 1.2:+59987154 | None:intergenic |
| AATCTGCCTCCTCAAAGCTT+CGG | 0.421550 | 1.2:+59980009 | None:intergenic |
| TTCCATATCTTATCAGCAAA+TGG | 0.431294 | 1.2:+59982423 | None:intergenic |
| TACGAAGATTGGGCAGGCAT+TGG | 0.432224 | 1.2:-59977851 | MS.gene055582:CDS |
| ACACGTTGTCCAACATATAA+TGG | 0.433131 | 1.2:+59980706 | None:intergenic |
| GAGGCAACGCAATACCTATA+CGG | 0.433200 | 1.2:-59978412 | MS.gene055582:CDS |
| AAGAGCTTCCACCATTTCAA+TGG | 0.436695 | 1.2:+59986096 | None:intergenic |
| AAGAAGTTGTCTAATAAATT+GGG | 0.437836 | 1.2:-59986380 | MS.gene055582:CDS |
| CTTTACTTAACGATGCAATC+TGG | 0.440962 | 1.2:-59977712 | MS.gene055582:CDS |
| CCGTCTTCTGAAGTAGAATC+TGG | 0.447167 | 1.2:-59983548 | MS.gene055582:intron |
| AAGCTCTTTACAATATGAAT+CGG | 0.447230 | 1.2:-59986081 | MS.gene055582:CDS |
| ACAGAAAGCATGGTAAAGAT+TGG | 0.448397 | 1.2:-59986313 | MS.gene055582:CDS |
| GAGCCAGCTCCATCTTTCTC+AGG | 0.448770 | 1.2:+59987097 | None:intergenic |
| CTTGAATTTCCATTAATATG+TGG | 0.449653 | 1.2:+59979953 | None:intergenic |
| ACTTGTTTCTGCAGTTCCCT+TGG | 0.450351 | 1.2:-59980865 | MS.gene055582:intron |
| CTGATACCATGCTTCAATTG+AGG | 0.455978 | 1.2:-59978431 | MS.gene055582:CDS |
| CACTCAACACGAGTTAGCCT+TGG | 0.457331 | 1.2:+59981000 | None:intergenic |
| CATTGCATGTGCCTGTAGCC+TGG | 0.458879 | 1.2:+59978263 | None:intergenic |
| GTTTGCCAAAAGAGAATTTG+TGG | 0.458990 | 1.2:-59981055 | MS.gene055582:CDS |
| CACAGAAGCATCGAGAAACT+TGG | 0.464933 | 1.2:+59984109 | None:intergenic |
| AAAGAAAGAGTGGAAAATGT+TGG | 0.469922 | 1.2:-59983948 | MS.gene055582:CDS |
| TGCTCAGAGCCGGGATAGAA+TGG | 0.470304 | 1.2:-59984320 | MS.gene055582:intron |
| TGGAAGGTAGTCTTGAAAGC+AGG | 0.470580 | 1.2:-59984073 | MS.gene055582:CDS |
| AGAATCACGTCTCCAGTTGA+AGG | 0.473764 | 1.2:-59982622 | MS.gene055582:CDS |
| TTTCTCGATGCTTCTGTGGA+TGG | 0.475165 | 1.2:-59984104 | MS.gene055582:CDS |
| ATGAAGGTGATGAGCTCAAA+TGG | 0.475791 | 1.2:+59977646 | None:intergenic |
| TATCACAGGCAACCTGTACT+TGG | 0.476810 | 1.2:+59977801 | None:intergenic |
| AGTTCTCTCCTGCTCAGAGC+CGG | 0.477289 | 1.2:-59984330 | MS.gene055582:CDS |
| ATGGAAGGAACGAGCACTGC+TGG | 0.477901 | 1.2:-59984002 | MS.gene055582:CDS |
| TGGAAGTAACAGACTGAGAC+TGG | 0.479884 | 1.2:+59985252 | None:intergenic |
| GATATTTCTCCTGAGAAAGA+TGG | 0.480654 | 1.2:-59987106 | MS.gene055582:CDS |
| ATAATATGCCCGAAGCTTTG+AGG | 0.481922 | 1.2:-59980018 | MS.gene055582:CDS |
| CTTAACTAAAGCACTTGAAG+AGG | 0.482863 | 1.2:+59979886 | None:intergenic |
| GAGCACTGCTGGAGTTCCTA+AGG | 0.483645 | 1.2:-59983991 | MS.gene055582:CDS |
| CATTAAAGGATCCAGGCTAC+AGG | 0.484028 | 1.2:-59978274 | MS.gene055582:CDS |
| ATTCTATCCCGGCTCTGAGC+AGG | 0.485679 | 1.2:+59984322 | None:intergenic |
| TGGCAGAGAGGTTTCCGTAT+AGG | 0.486136 | 1.2:+59978398 | None:intergenic |
| GCTACAGGCACATGCAATGC+TGG | 0.487202 | 1.2:-59978259 | MS.gene055582:CDS |
| GTTGAAGGGAGAAAGATTGA+TGG | 0.487498 | 1.2:-59982607 | MS.gene055582:CDS |
| TTGAAATCATTAAAGGATCC+AGG | 0.488460 | 1.2:-59978281 | MS.gene055582:CDS |
| AATGGTCTTGCCAAATCTGT+TGG | 0.489638 | 1.2:+59980724 | None:intergenic |
| TTGGGATCTCAGTGGAGCAA+GGG | 0.491437 | 1.2:-59986362 | MS.gene055582:CDS |
| GCATGCAGCGGCACTGAAGA+AGG | 0.491447 | 1.2:-59983897 | MS.gene055582:CDS |
| AGAGGTTACCAATATTGGCC+TGG | 0.491630 | 1.2:+59979047 | None:intergenic |
| CATCTTATTTGGTTCGCAGA+TGG | 0.495359 | 1.2:-59981119 | MS.gene055582:CDS |
| GCACGCAGTAAAACCTCAAA+AGG | 0.495393 | 1.2:+59981445 | None:intergenic |
| AACAGATGAAATCCACGCCT+TGG | 0.497756 | 1.2:-59983609 | MS.gene055582:intron |
| GGTCTGCAGCCTCGTGCTGT+TGG | 0.500748 | 1.2:-59984559 | MS.gene055582:CDS |
| ACGTAATAGATCCATTGAAA+TGG | 0.501185 | 1.2:-59986107 | MS.gene055582:CDS |
| GAACTAACTTCACTTAAAAG+TGG | 0.502840 | 1.2:+59981385 | None:intergenic |
| TAATAAGCACTCTACCCAAA+AGG | 0.509532 | 1.2:-59981269 | MS.gene055582:intron |
| CAGTCTGTTACTTCCAGTGA+TGG | 0.510709 | 1.2:-59985245 | MS.gene055582:CDS |
| GACAGATCATTATAATGTCC+TGG | 0.510737 | 1.2:-59985749 | MS.gene055582:intron |
| AGTACAGGTTGCCTGTGATA+AGG | 0.511473 | 1.2:-59977798 | MS.gene055582:CDS |
| CTCTCAAAAGAAAGATGATA+GGG | 0.511587 | 1.2:-59984506 | MS.gene055582:CDS |
| GAAGAGGGGCGTACCTTCAC+AGG | 0.513156 | 1.2:+59979902 | None:intergenic |
| AAGATGCTATTACGAAGATT+GGG | 0.513873 | 1.2:-59977861 | MS.gene055582:CDS |
| TTTGCTTTGGGCTTCATCCA+TGG | 0.515055 | 1.2:+59978375 | None:intergenic |
| GCTAAAGGAAGCCAGTGGAC+AGG | 0.515599 | 1.2:-59978542 | MS.gene055582:intron |
| TGGTTCTATACTCGTAAAAG+AGG | 0.516423 | 1.2:+59979973 | None:intergenic |
| GTTCTCTCCTGCTCAGAGCC+GGG | 0.518889 | 1.2:-59984329 | MS.gene055582:CDS |
| CACGGTACTTGTAGAGCTAA+AGG | 0.519139 | 1.2:-59978557 | MS.gene055582:CDS |
| TACTTAAATCATGTTGGACT+AGG | 0.519442 | 1.2:-59981030 | MS.gene055582:CDS |
| AGGAAGAGAGTGATAGTGAA+AGG | 0.519581 | 1.2:-59985358 | MS.gene055582:CDS |
| CATTATTCTGAGCTGCGGAC+TGG | 0.520480 | 1.2:-59980763 | MS.gene055582:CDS |
| AGCTCTTTACAATATGAATC+GGG | 0.520904 | 1.2:-59986080 | MS.gene055582:intron |
| ATAGAACTATCCGACATACT+AGG | 0.521403 | 1.2:+59978330 | None:intergenic |
| GGAAGAGAGTGATAGTGAAA+GGG | 0.522040 | 1.2:-59985357 | MS.gene055582:CDS |
| TTACAGAAAGAAAGAAAGAG+TGG | 0.522065 | 1.2:-59983958 | MS.gene055582:CDS |
| GTGGAGTACTTAAATCATGT+TGG | 0.522193 | 1.2:-59981036 | MS.gene055582:CDS |
| TTCTGTTCTCCTCTCCTATG+TGG | 0.525089 | 1.2:+59984352 | None:intergenic |
| TCAAGTGCTTTAGTTAAGCA+AGG | 0.526265 | 1.2:-59979881 | MS.gene055582:CDS |
| CAAAGTTTGCAAAGCATCCA+AGG | 0.526548 | 1.2:+59983592 | None:intergenic |
| GGAAATTATCAGCTTGATGA+CGG | 0.526857 | 1.2:-59983927 | MS.gene055582:CDS |
| GAAGCCACATGCCTGTCCAC+TGG | 0.527209 | 1.2:+59978531 | None:intergenic |
| ATATTATCTAATGGATTCAA+AGG | 0.530582 | 1.2:+59980034 | None:intergenic |
| GCAAAAGTCCACTGTGTCAA+AGG | 0.530832 | 1.2:-59982394 | MS.gene055582:intron |
| GATGAATTCAACTCCTAACT+GGG | 0.531998 | 1.2:+59980594 | None:intergenic |
| TTGGCAAGACCATTATATGT+TGG | 0.532186 | 1.2:-59980715 | MS.gene055582:CDS |
| ATGTGGTGTCTGAGAAACTA+GGG | 0.533355 | 1.2:+59984369 | None:intergenic |
| ACAACAGAAGCTGTCCCCTC+TGG | 0.533993 | 1.2:+59985790 | None:intergenic |
| GACTTATCTTTACGCATGGA+TGG | 0.534395 | 1.2:+59981319 | None:intergenic |
| CACAGGCAACCTGTACTTGG+TGG | 0.535612 | 1.2:+59977804 | None:intergenic |
| ATAGTGCACTTGATTATCCA+TGG | 0.536074 | 1.2:-59981077 | MS.gene055582:CDS |
| ACTGAATTCTGCACTTGTCA+TGG | 0.538319 | 1.2:+59980626 | None:intergenic |
| CGGCATCATTAGAGATAGAT+CGG | 0.538917 | 1.2:+59983568 | None:intergenic |
| CAGATTGCATCGTTAAGTAA+AGG | 0.540362 | 1.2:+59977713 | None:intergenic |
| TGCTTTAGTTAAGCAAGGAA+AGG | 0.541102 | 1.2:-59979876 | MS.gene055582:intron |
| GGAAGGTAGTCTTGAAAGCA+GGG | 0.541939 | 1.2:-59984072 | MS.gene055582:CDS |
| ACTCAACACGAGTTAGCCTT+GGG | 0.542670 | 1.2:+59981001 | None:intergenic |
| AGCAGTTGTCCACCAAGTAC+AGG | 0.544298 | 1.2:-59977813 | MS.gene055582:CDS |
| TGCTAACCATGTCACTTCCC+AGG | 0.548811 | 1.2:-59979065 | MS.gene055582:CDS |
| CTGCGGACTGGTATAAGAGA+TGG | 0.549190 | 1.2:-59980751 | MS.gene055582:CDS |
| TTAACTAAAGCACTTGAAGA+GGG | 0.552147 | 1.2:+59979887 | None:intergenic |
| ATAAGACTTATCTTTACGCA+TGG | 0.553936 | 1.2:+59981315 | None:intergenic |
| AGGTCTCAAGATCAAGTGAA+TGG | 0.554399 | 1.2:-59977778 | MS.gene055582:CDS |
| CGTTCCTTCCATATCCATCA+AGG | 0.554433 | 1.2:+59984013 | None:intergenic |
| TATGTGGTGTCTGAGAAACT+AGG | 0.554615 | 1.2:+59984368 | None:intergenic |
| AAAACCTGCGTGGTTTGCCA+AGG | 0.555120 | 1.2:+59980848 | None:intergenic |
| GAAGCTTTGAGGAGGCAGAT+TGG | 0.556916 | 1.2:-59980007 | MS.gene055582:CDS |
| TGCTATTACGAAGATTGGGC+AGG | 0.562780 | 1.2:-59977857 | MS.gene055582:CDS |
| GTTCTATGACACAAGAGTCT+AGG | 0.563001 | 1.2:-59978314 | MS.gene055582:CDS |
| ACTTCAGCTTAATGTCTCAA+AGG | 0.565165 | 1.2:-59985282 | MS.gene055582:CDS |
| ACATACTAGGAAGGTCATCA+TGG | 0.567760 | 1.2:+59978343 | None:intergenic |
| TTTGCAAAGCATCCAAGGCG+TGG | 0.570904 | 1.2:+59983597 | None:intergenic |
| GAGGTTACCAATATTGGCCT+GGG | 0.571947 | 1.2:+59979048 | None:intergenic |
| TTTGAAGGAAAATAATATGG+AGG | 0.574084 | 1.2:-59983859 | MS.gene055582:CDS |
| AGGGAGAGCAATGATGCACC+AGG | 0.581666 | 1.2:-59985338 | MS.gene055582:CDS |
| TGGGATCTCAGTGGAGCAAG+GGG | 0.581686 | 1.2:-59986361 | MS.gene055582:CDS |
| CACTTTACACGGTTGAGCAG+AGG | 0.582929 | 1.2:+59979012 | None:intergenic |
| GAATGTTTAAAAGATTCTGA+AGG | 0.583011 | 1.2:-59978598 | MS.gene055582:CDS |
| ATTGGGATCTCAGTGGAGCA+AGG | 0.585319 | 1.2:-59986363 | MS.gene055582:CDS |
| CCAGATTCTACTTCAGAAGA+CGG | 0.586286 | 1.2:+59983548 | None:intergenic |
| TGGTCTCAAGCTACAAAGGA+AGG | 0.586757 | 1.2:-59977886 | MS.gene055582:CDS |
| GTTCCCTTGGCAAACCACGC+AGG | 0.587364 | 1.2:-59980852 | MS.gene055582:CDS |
| ACTTAAATCATGTTGGACTA+GGG | 0.588058 | 1.2:-59981029 | MS.gene055582:CDS |
| TATGAAGCATACAGAAAGCA+TGG | 0.589048 | 1.2:-59986323 | MS.gene055582:CDS |
| TGATGTTGCATCACTTTACA+CGG | 0.589402 | 1.2:+59979001 | None:intergenic |
| GTAACAGACTGAGACTGGAC+AGG | 0.589416 | 1.2:+59985257 | None:intergenic |
| CAAGGCTAACTCGTGTTGAG+TGG | 0.590048 | 1.2:-59980999 | MS.gene055582:CDS |
| TATTGGCCTGGGAAGTGACA+TGG | 0.591157 | 1.2:+59979059 | None:intergenic |
| TAATAGATCCATTGAAATGG+TGG | 0.592802 | 1.2:-59986104 | MS.gene055582:CDS |
| AAAACAAGAGAGATTCATGA+TGG | 0.598180 | 1.2:-59980667 | MS.gene055582:CDS |
| TCTCCTGAGAAAGATGGAGC+TGG | 0.598280 | 1.2:-59987100 | MS.gene055582:CDS |
| TGATCTTGAGACCTTATCAC+AGG | 0.600930 | 1.2:+59977787 | None:intergenic |
| GCATGGTAAAGATTGGAAGA+AGG | 0.602065 | 1.2:-59986306 | MS.gene055582:intron |
| CTTCATCCATGGTGGCAGAG+AGG | 0.603440 | 1.2:+59978386 | None:intergenic |
| AAACCTGCGTGGTTTGCCAA+GGG | 0.605604 | 1.2:+59980849 | None:intergenic |
| CAAGTTTCTCGATGCTTCTG+TGG | 0.606617 | 1.2:-59984108 | MS.gene055582:CDS |
| GGCATGGTCTCAAGCTACAA+AGG | 0.609766 | 1.2:-59977890 | MS.gene055582:CDS |
| CGGAAACCTCTCTGCCACCA+TGG | 0.610537 | 1.2:-59978392 | MS.gene055582:CDS |
| AATCAACATCAACAAGCCAT+AGG | 0.617002 | 1.2:-59982554 | MS.gene055582:CDS |
| GCGTTGCCTCAATTGAAGCA+TGG | 0.617652 | 1.2:+59978425 | None:intergenic |
| GAATCACGTCTCCAGTTGAA+GGG | 0.618260 | 1.2:-59982621 | MS.gene055582:CDS |
| AATCTAGAAGTGTGAATAAG+CGG | 0.619158 | 1.2:-59987144 | MS.gene055582:CDS |
| GCATATCTATCTCTACCAGA+GGG | 0.620511 | 1.2:-59985805 | MS.gene055582:CDS |
| AGTTGAATACCATTCTATCC+CGG | 0.621666 | 1.2:+59984311 | None:intergenic |
| AGCACTGCTGGAGTTCCTAA+GGG | 0.622103 | 1.2:-59983990 | MS.gene055582:CDS |
| TTACTGCGTGCTGATCAGAA+AGG | 0.622646 | 1.2:-59981433 | MS.gene055582:CDS |
| TGACAGAATTACCTCCAAAG+AGG | 0.625229 | 1.2:+59983775 | None:intergenic |
| GGCATATCTATCTCTACCAG+AGG | 0.628948 | 1.2:-59985806 | MS.gene055582:CDS |
| TGATGACCTTCCTAGTATGT+CGG | 0.630040 | 1.2:-59978340 | MS.gene055582:CDS |
| TTTCAAGAAGCATTATGCCA+CGG | 0.645708 | 1.2:-59978575 | MS.gene055582:CDS |
| AACTATCCGACATACTAGGA+AGG | 0.646168 | 1.2:+59978334 | None:intergenic |
| GCTTTGGGCTTCATCCATGG+TGG | 0.646183 | 1.2:+59978378 | None:intergenic |
| AAGGATCAATGGCACCGACA+AGG | 0.648478 | 1.2:-59987168 | None:intergenic |
| TTAAGCAGGGCTTCACAAAG+AGG | 0.648843 | 1.2:-59984400 | MS.gene055582:CDS |
| GACGGAGGAGAAGCATGCAG+CGG | 0.650843 | 1.2:-59983909 | MS.gene055582:CDS |
| AGTTCCTTGATGGATATGGA+AGG | 0.652302 | 1.2:-59984017 | MS.gene055582:CDS |
| AGCAGGGCTTCACAAAGAGG+AGG | 0.653229 | 1.2:-59984397 | MS.gene055582:CDS |
| GTTAGGAGTTGAATTCATCA+CGG | 0.655789 | 1.2:-59980590 | MS.gene055582:intron |
| CTCACCAAAACAAATAAAGA+CGG | 0.659655 | 1.2:-59981473 | MS.gene055582:CDS |
| TTGGACTAGGGAATATCCCA+AGG | 0.661354 | 1.2:-59981017 | MS.gene055582:CDS |
| AATTATCAGCTTGATGACGG+AGG | 0.663340 | 1.2:-59983924 | MS.gene055582:CDS |
| TATACTTGCCTTTGACACAG+TGG | 0.663441 | 1.2:+59982386 | None:intergenic |
| AATTCTCCCCAACAAGTCAG+CGG | 0.664103 | 1.2:-59983815 | MS.gene055582:CDS |
| CTAATAAATTGGGATCTCAG+TGG | 0.665494 | 1.2:-59986370 | MS.gene055582:CDS |
| TAACTAAAGCACTTGAAGAG+GGG | 0.666484 | 1.2:+59979888 | None:intergenic |
| AATGCATGCTTCACCTGTGA+AGG | 0.667655 | 1.2:-59979915 | MS.gene055582:CDS |
| TAGTTTCTCAGACACCACAT+AGG | 0.669340 | 1.2:-59984366 | MS.gene055582:CDS |
| AATGGATCTATTACGTACAG+CGG | 0.676588 | 1.2:+59986114 | None:intergenic |
| CTTTAGCTCTACAAGTACCG+TGG | 0.680662 | 1.2:+59978558 | None:intergenic |
| CAGAGGCAGCTTGAGCACAG+AGG | 0.682588 | 1.2:+59979029 | None:intergenic |
| TCTCAGACACCACATAGGAG+AGG | 0.683376 | 1.2:-59984361 | MS.gene055582:CDS |
| GAGTGGTAAACTGGGACTCG+TGG | 0.685072 | 1.2:+59984526 | None:intergenic |
| ACTGCTGGAGTTCCTAAGGG+AGG | 0.691043 | 1.2:-59983987 | MS.gene055582:CDS |
| GAAGGTAGTCTTGAAAGCAG+GGG | 0.695243 | 1.2:-59984071 | MS.gene055582:CDS |
| ATATGCCCGAAGCTTTGAGG+AGG | 0.696255 | 1.2:-59980015 | MS.gene055582:CDS |
| GGAAACATTATTCTGAGCTG+CGG | 0.699382 | 1.2:-59980768 | MS.gene055582:CDS |
| AAGTGTTCCGAAAACCTGCG+TGG | 0.699640 | 1.2:+59980838 | None:intergenic |
| TGTGGTGTCTGAGAAACTAG+GGG | 0.699681 | 1.2:+59984370 | None:intergenic |
| AAATAAAGTTAAAATTCGTG+CGG | 0.700583 | 1.2:-59982529 | MS.gene055582:CDS |
| AACAGTATCGAGAATCAGTG+AGG | 0.709059 | 1.2:-59980789 | MS.gene055582:CDS |
| GATCTGTCATCATTGCAATG+AGG | 0.714057 | 1.2:+59985764 | None:intergenic |
| GTAGAGCTAAAGGAAGCCAG+TGG | 0.716008 | 1.2:-59978547 | MS.gene055582:CDS |
| GGGATCTCAGTGGAGCAAGG+GGG | 0.723954 | 1.2:-59986360 | MS.gene055582:CDS |
| ATGAATTCAACTCCTAACTG+GGG | 0.726781 | 1.2:+59980595 | None:intergenic |
| CATATCTATCTCTACCAGAG+GGG | 0.741033 | 1.2:-59985804 | MS.gene055582:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 59977646 | 59987182 | 59977646 | ID=MS.gene055582 |
| chr1.2 | mRNA | 59977646 | 59987182 | 59977646 | ID=MS.gene055582.t1;Parent=MS.gene055582 |
| chr1.2 | exon | 59987078 | 59987182 | 59987078 | ID=MS.gene055582.t1.exon1;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59987078 | 59987182 | 59987078 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59986307 | 59986405 | 59986307 | ID=MS.gene055582.t1.exon2;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59986307 | 59986405 | 59986307 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59986081 | 59986143 | 59986081 | ID=MS.gene055582.t1.exon3;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59986081 | 59986143 | 59986081 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59985750 | 59985827 | 59985750 | ID=MS.gene055582.t1.exon4;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59985750 | 59985827 | 59985750 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59985210 | 59985378 | 59985210 | ID=MS.gene055582.t1.exon5;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59985210 | 59985378 | 59985210 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59984321 | 59984580 | 59984321 | ID=MS.gene055582.t1.exon6;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59984321 | 59984580 | 59984321 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59983787 | 59984156 | 59983787 | ID=MS.gene055582.t1.exon7;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59983787 | 59984156 | 59983787 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59983549 | 59983626 | 59983549 | ID=MS.gene055582.t1.exon8;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59983549 | 59983626 | 59983549 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59982395 | 59982642 | 59982395 | ID=MS.gene055582.t1.exon9;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59982395 | 59982642 | 59982395 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59981270 | 59981554 | 59981270 | ID=MS.gene055582.t1.exon10;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59981270 | 59981554 | 59981270 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59980985 | 59981163 | 59980985 | ID=MS.gene055582.t1.exon11;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59980985 | 59981163 | 59980985 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59980591 | 59980873 | 59980591 | ID=MS.gene055582.t1.exon12;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59980591 | 59980873 | 59980591 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59979877 | 59980071 | 59979877 | ID=MS.gene055582.t1.exon13;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59979877 | 59980071 | 59979877 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59978943 | 59979092 | 59978943 | ID=MS.gene055582.t1.exon14;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59978943 | 59979092 | 59978943 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59978543 | 59978683 | 59978543 | ID=MS.gene055582.t1.exon15;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59978543 | 59978683 | 59978543 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59978245 | 59978457 | 59978245 | ID=MS.gene055582.t1.exon16;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59978245 | 59978457 | 59978245 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| chr1.2 | exon | 59977646 | 59977911 | 59977646 | ID=MS.gene055582.t1.exon17;Parent=MS.gene055582.t1 |
| chr1.2 | CDS | 59977646 | 59977911 | 59977646 | ID=cds.MS.gene055582.t1;Parent=MS.gene055582.t1 |
| Gene Sequence |
| Protein sequence |
