Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44107.t1 | XP_024638392.1 | 97 | 1126 | 30 | 2 | 1 | 1123 | 1 | 1125 | 0.00E+00 | 2098.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44107.t1 | Q6A333 | 43.6 | 1180 | 480 | 30 | 1 | 1123 | 1 | 1051 | 5.8e-211 | 736.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44107.t1 | A0A072VM38 | 96.1 | 1136 | 30 | 3 | 1 | 1123 | 1 | 1135 | 0.0e+00 | 2090.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44107.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052776 | MS.gene44107 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene055311 | MS.gene44107 | 0.81549 | 9.00E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene44107 | 0.824334 | 8.54E-54 | -1.69E-46 |
| MS.gene055314 | MS.gene44107 | 0.840703 | 7.41E-58 | -1.69E-46 |
| MS.gene055582 | MS.gene44107 | 0.887075 | 1.96E-72 | -1.69E-46 |
| MS.gene056045 | MS.gene44107 | 0.937147 | 5.55E-98 | -1.69E-46 |
| MS.gene056181 | MS.gene44107 | 0.830334 | 3.11E-55 | -1.69E-46 |
| MS.gene058639 | MS.gene44107 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene44107 | 0.804129 | 2.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005236 | MS.gene44107 | PPI |
| MS.gene055583 | MS.gene44107 | PPI |
| MS.gene44107 | MS.gene055582 | PPI |
| MS.gene005237 | MS.gene44107 | PPI |
| MS.gene056045 | MS.gene44107 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44107.t1 | MTR_1g083040 | 96.391 | 1136 | 27 | 3 | 1 | 1123 | 1 | 1135 | 0.0 | 2258 |
| MS.gene44107.t1 | MTR_1g083040 | 95.423 | 1136 | 27 | 4 | 1 | 1123 | 1 | 1124 | 0.0 | 2226 |
| MS.gene44107.t1 | MTR_1g083040 | 95.246 | 1136 | 27 | 4 | 1 | 1123 | 1 | 1122 | 0.0 | 2221 |
| MS.gene44107.t1 | MTR_1g083040 | 94.278 | 1136 | 27 | 5 | 1 | 1123 | 1 | 1111 | 0.0 | 2194 |
| MS.gene44107.t1 | MTR_1g083040 | 95.844 | 818 | 20 | 3 | 1 | 805 | 1 | 817 | 0.0 | 1603 |
| MS.gene44107.t1 | MTR_4g119390 | 43.719 | 1210 | 547 | 32 | 1 | 1123 | 1 | 1163 | 0.0 | 788 |
| MS.gene44107.t1 | MTR_4g119390 | 43.056 | 1224 | 570 | 32 | 1 | 1123 | 1 | 1198 | 0.0 | 777 |
| MS.gene44107.t1 | MTR_1g492660 | 40.816 | 98 | 26 | 2 | 22 | 114 | 91 | 161 | 2.58e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44107.t1 | AT3G21430 | 43.039 | 1178 | 566 | 24 | 1 | 1123 | 1 | 1128 | 0.0 | 791 |
| MS.gene44107.t1 | AT3G21430 | 43.039 | 1178 | 566 | 24 | 1 | 1123 | 1 | 1128 | 0.0 | 791 |
| MS.gene44107.t1 | AT3G21430 | 42.749 | 1186 | 562 | 25 | 1 | 1123 | 1 | 1132 | 0.0 | 788 |
| MS.gene44107.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 667 |
| MS.gene44107.t1 | AT3G05380 | 53.757 | 173 | 72 | 4 | 952 | 1123 | 887 | 1052 | 4.60e-45 | 177 |
| MS.gene44107.t1 | AT3G05380 | 46.820 | 912 | 397 | 25 | 1 | 855 | 1 | 881 | 0.0 | 667 |
| MS.gene44107.t1 | AT3G05380 | 53.757 | 173 | 72 | 4 | 952 | 1123 | 886 | 1051 | 4.59e-45 | 177 |
| MS.gene44107.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 667 |
| MS.gene44107.t1 | AT3G05380 | 53.757 | 173 | 72 | 4 | 952 | 1123 | 887 | 1052 | 4.60e-45 | 177 |
| MS.gene44107.t1 | AT3G05380 | 47.039 | 912 | 396 | 24 | 1 | 855 | 1 | 882 | 0.0 | 667 |
| MS.gene44107.t1 | AT3G05380 | 53.757 | 173 | 72 | 4 | 952 | 1123 | 887 | 1052 | 4.60e-45 | 177 |
| MS.gene44107.t1 | AT3G05380 | 44.952 | 832 | 374 | 22 | 80 | 855 | 1 | 804 | 0.0 | 578 |
| MS.gene44107.t1 | AT3G05380 | 53.757 | 173 | 72 | 4 | 952 | 1123 | 809 | 974 | 3.42e-45 | 177 |
| MS.gene44107.t1 | AT5G27610 | 42.329 | 893 | 362 | 27 | 1 | 836 | 1 | 797 | 1.14e-179 | 552 |
| MS.gene44107.t1 | AT5G27610 | 42.473 | 186 | 100 | 3 | 938 | 1123 | 792 | 970 | 9.71e-31 | 131 |
Find 241 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATGAATCTCTCTTGTTT+TGG | 0.149228 | 1.3:-58594918 | None:intergenic |
| TAGCTGTTTGTCATCTTATT+TGG | 0.158728 | 1.3:+58594457 | MS.gene44107:CDS |
| GAAGAAGTTGTCTAATAAAT+TGG | 0.161696 | 1.3:+58589260 | MS.gene44107:CDS |
| ATTAATGGAAATTCAAGTTT+TGG | 0.224585 | 1.3:+58595668 | MS.gene44107:CDS |
| CGTCTACTTCTTTGTTTAGT+TGG | 0.235444 | 1.3:-58594226 | None:intergenic |
| TTCTTTGAAGGAAAATAATA+TGG | 0.244666 | 1.3:+58591777 | MS.gene44107:CDS |
| TTAAACATTCTATGCCATTT+TGG | 0.249911 | 1.3:-58597004 | None:intergenic |
| ATTTGAATTTCTCTGTAAAT+AGG | 0.271279 | 1.3:-58598651 | None:intergenic |
| AGCACAGAGGTTACCAATAT+TGG | 0.278915 | 1.3:-58596573 | None:intergenic |
| GTACTCCACAAATTCTCTTT+TGG | 0.279992 | 1.3:-58594537 | None:intergenic |
| AGTATAGAACCACATATTAA+TGG | 0.291083 | 1.3:+58595653 | MS.gene44107:CDS |
| TTCGAGTATCGCACGGTTGC+AGG | 0.302283 | 1.3:-58598623 | None:intergenic |
| TGATGAATTCAACTCCTAAC+TGG | 0.311762 | 1.3:-58594994 | None:intergenic |
| TTGACCGTCTTTATTTGTTT+TGG | 0.312836 | 1.3:-58594118 | None:intergenic |
| AAAGCGTGCTCTAGATAAAA+AGG | 0.313137 | 1.3:+58596673 | MS.gene44107:CDS |
| GTCACTTCCCAGGCCAATAT+TGG | 0.328742 | 1.3:+58596560 | MS.gene44107:CDS |
| TCAGAATCTTTGTGCAGTTT+CGG | 0.329467 | 1.3:-58598180 | None:intergenic |
| AATGCTGGATGCTGCATTTC+AGG | 0.332422 | 1.3:+58597371 | MS.gene44107:CDS |
| TACTAGTTCCTTGATGGATA+TGG | 0.336948 | 1.3:+58591618 | MS.gene44107:CDS |
| TAGAGATACTAGTTCCTTGA+TGG | 0.342926 | 1.3:+58591612 | MS.gene44107:CDS |
| TTGAGTGGAGTGTCATAAAA+AGG | 0.349014 | 1.3:+58594603 | MS.gene44107:CDS |
| GGCATATTGGAAAACCAAAA+TGG | 0.350448 | 1.3:+58596990 | MS.gene44107:CDS |
| AAAGATGCTATTACGAAGAT+TGG | 0.351072 | 1.3:+58598006 | MS.gene44107:CDS |
| ATGGCCATCAAAATTTGCTT+TGG | 0.355548 | 1.3:-58597253 | None:intergenic |
| AGCCTCGTGCTGTTGGAAAA+AGG | 0.356186 | 1.3:+58591087 | MS.gene44107:CDS |
| TTCCATTTGCTGATAAGATA+TGG | 0.360437 | 1.3:+58593156 | MS.gene44107:CDS |
| TAGAGAGAGGCAACCATCAC+TGG | 0.361044 | 1.3:-58590408 | None:intergenic |
| CACGAGCTGTCTCTGACATT+TGG | 0.361609 | 1.3:-58591507 | None:intergenic |
| AGATGGACTTCCAACAGATT+TGG | 0.362036 | 1.3:+58594853 | MS.gene44107:CDS |
| GGCTACATTAACCATGATTC+AGG | 0.369905 | 1.3:+58598248 | MS.gene44107:CDS |
| CTTGGATGCTTTGCAAACTT+TGG | 0.371982 | 1.3:+58592048 | MS.gene44107:CDS |
| ACTCTCAAAAGAAAGATGAT+AGG | 0.373372 | 1.3:+58591132 | MS.gene44107:CDS |
| ACTGTCATTGAAATCATTAA+AGG | 0.374232 | 1.3:+58597327 | MS.gene44107:CDS |
| GAAAGCAGGGGAGCTGAAAA+TGG | 0.374259 | 1.3:+58591580 | MS.gene44107:CDS |
| GCTTCGGGCATATTATCTAA+TGG | 0.375299 | 1.3:-58595590 | None:intergenic |
| ATCTGCCTCCTCAAAGCTTC+GGG | 0.377312 | 1.3:-58595605 | None:intergenic |
| TAGGGATGAGAGCTAAAATC+TGG | 0.378728 | 1.3:-58598695 | None:intergenic |
| TCATTCTTTCTCCCTTCAAC+TGG | 0.380375 | 1.3:-58592971 | None:intergenic |
| ATGGCTTGTTGATGTTGATT+CGG | 0.382537 | 1.3:-58593024 | None:intergenic |
| GAGGGGACAGCTTCTGTTGT+AGG | 0.386769 | 1.3:+58589854 | MS.gene44107:CDS |
| GAGCTTCGAAATGCTAATAA+TGG | 0.388504 | 1.3:+58596969 | MS.gene44107:CDS |
| AAATGCTAATAATGGCATAT+TGG | 0.389348 | 1.3:+58596977 | MS.gene44107:CDS |
| CTGAAGAAAAGACGCATTGA+TGG | 0.393599 | 1.3:+58590431 | MS.gene44107:CDS |
| TGGCCATCAAAATTTGCTTT+GGG | 0.396560 | 1.3:-58597252 | None:intergenic |
| AGCTTGAAGTCTACTGTTGA+TGG | 0.408517 | 1.3:+58591182 | MS.gene44107:CDS |
| CAGTTCGATCGTCCCCAGTT+AGG | 0.409738 | 1.3:+58594980 | MS.gene44107:CDS |
| GTCTTTAATTACCTGAATCA+TGG | 0.409754 | 1.3:-58598259 | None:intergenic |
| TGGCTTGTTGATGTTGATTC+GGG | 0.410687 | 1.3:-58593023 | None:intergenic |
| ACACTTCTAGATTTCCTTGT+CGG | 0.411329 | 1.3:-58588487 | None:intergenic |
| GAGAAGATATAATTCTAAGT+AGG | 0.419321 | 1.3:-58598714 | None:intergenic |
| AATCTGCCTCCTCAAAGCTT+CGG | 0.421550 | 1.3:-58595606 | None:intergenic |
| TTCCATATCTTATCAGCAAA+TGG | 0.431294 | 1.3:-58593158 | None:intergenic |
| TACGAAGATTGGGCAGGCAT+TGG | 0.432224 | 1.3:+58598017 | MS.gene44107:CDS |
| ACACGTTGTCCAACATATAA+TGG | 0.433131 | 1.3:-58594881 | None:intergenic |
| GAGGCAACGCAATACCTATA+CGG | 0.433200 | 1.3:+58597203 | MS.gene44107:CDS |
| AAGAGCTTCCACCATTTCAA+TGG | 0.436695 | 1.3:-58589545 | None:intergenic |
| AAGAAGTTGTCTAATAAATT+GGG | 0.437836 | 1.3:+58589261 | MS.gene44107:CDS |
| CATGAAGTGATGAGCTCAAA+TGG | 0.441310 | 1.3:-58598222 | None:intergenic |
| CCGTCTTCTGAAGTAGAATC+TGG | 0.447167 | 1.3:+58592091 | MS.gene44107:CDS |
| AAGCTCTTTACAATATGAAT+CGG | 0.447230 | 1.3:+58589560 | MS.gene44107:CDS |
| ACAGAAAGCATGGTAAAGAT+TGG | 0.448397 | 1.3:+58589328 | MS.gene44107:CDS |
| GAGCCAGCTCCATCTTTCTC+AGG | 0.448770 | 1.3:-58588544 | None:intergenic |
| CTTGAATTTCCATTAATATG+TGG | 0.449653 | 1.3:-58595662 | None:intergenic |
| ACTTGTTTCTGCAGTTCCCT+TGG | 0.450351 | 1.3:+58594722 | MS.gene44107:intron |
| CTGATACCATGCTTCAATTG+AGG | 0.455978 | 1.3:+58597184 | MS.gene44107:CDS |
| CACTCAACACGAGTTAGCCT+TGG | 0.457331 | 1.3:-58594587 | None:intergenic |
| CATTGCATGTGCCTGTAGCC+TGG | 0.458879 | 1.3:-58597352 | None:intergenic |
| GTTTGCCAAAAGAGAATTTG+TGG | 0.458990 | 1.3:+58594532 | MS.gene44107:CDS |
| AATATCTGAGCCACATCAGC+TGG | 0.464887 | 1.3:-58598582 | None:intergenic |
| CACAGAAGCATCGAGAAACT+TGG | 0.464933 | 1.3:-58591530 | None:intergenic |
| AGAAGATATAATTCTAAGTA+GGG | 0.465953 | 1.3:-58598713 | None:intergenic |
| AAAGAAAGAGTGGAAAATGT+TGG | 0.469922 | 1.3:+58591691 | MS.gene44107:CDS |
| TGCTCAGAGCCGGGATAGAA+TGG | 0.470304 | 1.3:+58591319 | MS.gene44107:CDS |
| TGGAAGGTAGTCTTGAAAGC+AGG | 0.470580 | 1.3:+58591566 | MS.gene44107:CDS |
| AGAATCACGTCTCCAGTTGA+AGG | 0.473764 | 1.3:+58592959 | MS.gene44107:intron |
| TTTCTCGATGCTTCTGTGGA+TGG | 0.475165 | 1.3:+58591535 | MS.gene44107:CDS |
| TATCACAGACAACCTGTACT+TGG | 0.477183 | 1.3:-58598067 | None:intergenic |
| AGTTCTCTCCTGCTCAGAGC+CGG | 0.477289 | 1.3:+58591309 | MS.gene44107:CDS |
| ATGGAAGGAACGAGCACTGC+TGG | 0.477901 | 1.3:+58591637 | MS.gene44107:CDS |
| TGGAAGTAACAGACTGAGAC+TGG | 0.479884 | 1.3:-58590388 | None:intergenic |
| GATATTTCTCCTGAGAAAGA+TGG | 0.480654 | 1.3:+58588535 | MS.gene44107:CDS |
| ATAATATGCCCGAAGCTTTG+AGG | 0.481922 | 1.3:+58595597 | MS.gene44107:CDS |
| CTTAACTAAAGCACTTGAAG+AGG | 0.482863 | 1.3:-58595729 | None:intergenic |
| GAGCACTGCTGGAGTTCCTA+AGG | 0.483645 | 1.3:+58591648 | MS.gene44107:CDS |
| CATTAAAGGATCCAGGCTAC+AGG | 0.484028 | 1.3:+58597341 | MS.gene44107:CDS |
| ATTCTATCCCGGCTCTGAGC+AGG | 0.485679 | 1.3:-58591317 | None:intergenic |
| TGGCAGAGAGGTTTCCGTAT+AGG | 0.486136 | 1.3:-58597217 | None:intergenic |
| GCTACAGGCACATGCAATGC+TGG | 0.487202 | 1.3:+58597356 | MS.gene44107:CDS |
| TTGAAATCATTAAAGGATCC+AGG | 0.488460 | 1.3:+58597334 | MS.gene44107:CDS |
| AATGGTCTTGCCAAATCTGT+TGG | 0.489638 | 1.3:-58594863 | None:intergenic |
| CCTTTACTTAACGATGCATC+TGG | 0.490660 | 1.3:+58598156 | MS.gene44107:CDS |
| TTGGGATCTCAGTGGAGCAA+GGG | 0.491437 | 1.3:+58589279 | MS.gene44107:CDS |
| GCATGCAGCGGCACTGAAGA+AGG | 0.491447 | 1.3:+58591742 | MS.gene44107:CDS |
| AGAGGTTACCAATATTGGCC+TGG | 0.491630 | 1.3:-58596568 | None:intergenic |
| CATCTTATTTGGTTCGCAGA+TGG | 0.495359 | 1.3:+58594468 | MS.gene44107:CDS |
| AACAGATGAAATCCACGCCT+TGG | 0.497756 | 1.3:+58592030 | MS.gene44107:intron |
| GCACGGTTGCAGGCTGGTAA+CGG | 0.498043 | 1.3:-58598613 | None:intergenic |
| CAGAGAAATTCAAATGTGCA+TGG | 0.498649 | 1.3:+58598659 | MS.gene44107:CDS |
| GGTCTGCAGCCTCGTGCTGT+TGG | 0.500748 | 1.3:+58591080 | MS.gene44107:intron |
| ACGTAATAGATCCATTGAAA+TGG | 0.501185 | 1.3:+58589534 | MS.gene44107:CDS |
| GAACTAACTTCACTTAAAAG+TGG | 0.502840 | 1.3:-58594202 | None:intergenic |
| TAATAAGCACTCTACCCAAA+AGG | 0.509532 | 1.3:+58594318 | MS.gene44107:CDS |
| CAGTCTGTTACTTCCAGTGA+TGG | 0.510709 | 1.3:+58590395 | MS.gene44107:CDS |
| GACAGATCATTATAATGTCC+TGG | 0.510737 | 1.3:+58589892 | MS.gene44107:CDS |
| CTCTCAAAAGAAAGATGATA+GGG | 0.511587 | 1.3:+58591133 | MS.gene44107:CDS |
| GAAGAGGGGCGTACCTTCAC+AGG | 0.513156 | 1.3:-58595713 | None:intergenic |
| AAGATGCTATTACGAAGATT+GGG | 0.513873 | 1.3:+58598007 | MS.gene44107:CDS |
| TTTGCTTTGGGCTTCATCCA+TGG | 0.515055 | 1.3:-58597240 | None:intergenic |
| GCTAAAGGAAGCCAGTGGAC+AGG | 0.515599 | 1.3:+58597073 | MS.gene44107:CDS |
| TGGTTCTATACTCGTAAAAG+AGG | 0.516423 | 1.3:-58595642 | None:intergenic |
| GTTCTCTCCTGCTCAGAGCC+GGG | 0.518889 | 1.3:+58591310 | MS.gene44107:CDS |
| CACGGTACTTGTAGAGCTAA+AGG | 0.519139 | 1.3:+58597058 | MS.gene44107:CDS |
| TACTTAAATCATGTTGGACT+AGG | 0.519442 | 1.3:+58594557 | MS.gene44107:CDS |
| AGGAAGAGAGTGATAGTGAA+AGG | 0.519581 | 1.3:+58590282 | MS.gene44107:intron |
| CATTATTCTGAGCTGCGGAC+TGG | 0.520480 | 1.3:+58594824 | MS.gene44107:CDS |
| AGCTCTTTACAATATGAATC+GGG | 0.520904 | 1.3:+58589561 | MS.gene44107:CDS |
| ATAGAACTATCCGACATACT+AGG | 0.521403 | 1.3:-58597285 | None:intergenic |
| GGAAGAGAGTGATAGTGAAA+GGG | 0.522040 | 1.3:+58590283 | MS.gene44107:intron |
| TTACAGAAAGAAAGAAAGAG+TGG | 0.522065 | 1.3:+58591681 | MS.gene44107:CDS |
| GTGGAGTACTTAAATCATGT+TGG | 0.522193 | 1.3:+58594551 | MS.gene44107:CDS |
| TTCTGTTCTCCTCTCCTATG+TGG | 0.525089 | 1.3:-58591287 | None:intergenic |
| TCAAGTGCTTTAGTTAAGCA+AGG | 0.526265 | 1.3:+58595734 | MS.gene44107:CDS |
| CAAAGTTTGCAAAGCATCCA+AGG | 0.526548 | 1.3:-58592047 | None:intergenic |
| GGAAATTATCAGCTTGATGA+CGG | 0.526857 | 1.3:+58591712 | MS.gene44107:CDS |
| GAAGCCACATGCCTGTCCAC+TGG | 0.527209 | 1.3:-58597084 | None:intergenic |
| ATATTATCTAATGGATTCAA+AGG | 0.530582 | 1.3:-58595581 | None:intergenic |
| GCAAAAGTCCACTGTGTCAA+AGG | 0.530832 | 1.3:+58593187 | MS.gene44107:CDS |
| GATGAATTCAACTCCTAACT+GGG | 0.531998 | 1.3:-58594993 | None:intergenic |
| TTGGCAAGACCATTATATGT+TGG | 0.532186 | 1.3:+58594872 | MS.gene44107:CDS |
| ATGTGGTGTCTGAGAAACTA+GGG | 0.533355 | 1.3:-58591270 | None:intergenic |
| ACAACAGAAGCTGTCCCCTC+TGG | 0.533993 | 1.3:-58589851 | None:intergenic |
| GACTTCTCTTTACGCATGGA+TGG | 0.534395 | 1.3:-58594268 | None:intergenic |
| ATAAGACTTCTCTTTACGCA+TGG | 0.535515 | 1.3:-58594272 | None:intergenic |
| CACAGACAACCTGTACTTGG+TGG | 0.535612 | 1.3:-58598064 | None:intergenic |
| ATAGTGCACTTGATTATCCA+TGG | 0.536074 | 1.3:+58594510 | MS.gene44107:CDS |
| ACTGAATTCTGCACTTGTCA+TGG | 0.538319 | 1.3:-58594961 | None:intergenic |
| CGGCATCATTAGAGATAGAT+CGG | 0.538917 | 1.3:-58592071 | None:intergenic |
| AGTACAGGTTGTCTGTGATA+AGG | 0.539393 | 1.3:+58598070 | MS.gene44107:CDS |
| TGCTTTAGTTAAGCAAGGAA+AGG | 0.541102 | 1.3:+58595739 | MS.gene44107:CDS |
| GGAAGGTAGTCTTGAAAGCA+GGG | 0.541939 | 1.3:+58591567 | MS.gene44107:CDS |
| ACTCAACACGAGTTAGCCTT+GGG | 0.542670 | 1.3:-58594586 | None:intergenic |
| AGCAGTTGTCCACCAAGTAC+AGG | 0.544298 | 1.3:+58598055 | MS.gene44107:CDS |
| TGCTAACCATGTCACTTCCC+AGG | 0.548811 | 1.3:+58596550 | MS.gene44107:CDS |
| CTGCGGACTGGTATAAGAGA+TGG | 0.549190 | 1.3:+58594836 | MS.gene44107:CDS |
| TTAACTAAAGCACTTGAAGA+GGG | 0.552147 | 1.3:-58595728 | None:intergenic |
| AGGTCTCAAGATCAAGTGAA+TGG | 0.554399 | 1.3:+58598090 | MS.gene44107:CDS |
| CGTTCCTTCCATATCCATCA+AGG | 0.554433 | 1.3:-58591626 | None:intergenic |
| TATGTGGTGTCTGAGAAACT+AGG | 0.554615 | 1.3:-58591271 | None:intergenic |
| CCAGATGCATCGTTAAGTAA+AGG | 0.554967 | 1.3:-58598156 | None:intergenic |
| AAAACCTGCGTGGTTTGCCA+AGG | 0.555120 | 1.3:-58594739 | None:intergenic |
| GAAGCTTTGAGGAGGCAGAT+TGG | 0.556916 | 1.3:+58595608 | MS.gene44107:CDS |
| GAATTTCTCTGTAAATAGGA+AGG | 0.557537 | 1.3:-58598647 | None:intergenic |
| TGCTATTACGAAGATTGGGC+AGG | 0.562780 | 1.3:+58598011 | MS.gene44107:CDS |
| GTTCTATGACACAAGAGTCT+AGG | 0.563001 | 1.3:+58597301 | MS.gene44107:CDS |
| ACTTCAGCTTAATGTCTCAA+AGG | 0.565165 | 1.3:+58590358 | MS.gene44107:CDS |
| ACATACTAGGAAGGTCATCA+TGG | 0.567760 | 1.3:-58597272 | None:intergenic |
| TTTGCAAAGCATCCAAGGCG+TGG | 0.570904 | 1.3:-58592042 | None:intergenic |
| GAGGTTACCAATATTGGCCT+GGG | 0.571947 | 1.3:-58596567 | None:intergenic |
| TTTGAAGGAAAATAATATGG+AGG | 0.574084 | 1.3:+58591780 | MS.gene44107:CDS |
| GCAATACCCTCCAGCTGATG+TGG | 0.575728 | 1.3:+58598572 | MS.gene44107:CDS |
| AGTATCGCACGGTTGCAGGC+TGG | 0.577322 | 1.3:-58598619 | None:intergenic |
| AGGGAGAGCAATGATGCACC+AGG | 0.581666 | 1.3:+58590302 | MS.gene44107:CDS |
| AAAGACGGTCAAACCTTCTG+AGG | 0.581676 | 1.3:+58594129 | MS.gene44107:CDS |
| TGGGATCTCAGTGGAGCAAG+GGG | 0.581686 | 1.3:+58589280 | MS.gene44107:CDS |
| CACTTTACACGGTTGAGCAG+AGG | 0.582929 | 1.3:-58596603 | None:intergenic |
| GAATGTTTAAAAGATTCTGA+AGG | 0.583011 | 1.3:+58597017 | MS.gene44107:CDS |
| ATTGGGATCTCAGTGGAGCA+AGG | 0.585319 | 1.3:+58589278 | MS.gene44107:CDS |
| CCAGATTCTACTTCAGAAGA+CGG | 0.586286 | 1.3:-58592091 | None:intergenic |
| TGGTCTCAAGCTACAAAGGA+AGG | 0.586757 | 1.3:+58597982 | MS.gene44107:CDS |
| GTTCCCTTGGCAAACCACGC+AGG | 0.587364 | 1.3:+58594735 | MS.gene44107:intron |
| AGAGAAATTCAAATGTGCAT+GGG | 0.587897 | 1.3:+58598660 | MS.gene44107:CDS |
| ACTTAAATCATGTTGGACTA+GGG | 0.588058 | 1.3:+58594558 | MS.gene44107:CDS |
| TATGAAGCATACAGAAAGCA+TGG | 0.589048 | 1.3:+58589318 | MS.gene44107:CDS |
| TGATGTTGCATCACTTTACA+CGG | 0.589402 | 1.3:-58596614 | None:intergenic |
| GTAACAGACTGAGACTGGAC+AGG | 0.589416 | 1.3:-58590383 | None:intergenic |
| CAAGGCTAACTCGTGTTGAG+TGG | 0.590048 | 1.3:+58594588 | MS.gene44107:CDS |
| TATTGGCCTGGGAAGTGACA+TGG | 0.591157 | 1.3:-58596556 | None:intergenic |
| TAATAGATCCATTGAAATGG+TGG | 0.592802 | 1.3:+58589537 | MS.gene44107:CDS |
| GCACGCAGTAAAACCTCAGA+AGG | 0.597284 | 1.3:-58594142 | None:intergenic |
| AAAACAAGAGAGATTCATGA+TGG | 0.598180 | 1.3:+58594920 | MS.gene44107:CDS |
| TCTCCTGAGAAAGATGGAGC+TGG | 0.598280 | 1.3:+58588541 | MS.gene44107:CDS |
| GCATGGTAAAGATTGGAAGA+AGG | 0.602065 | 1.3:+58589335 | MS.gene44107:CDS |
| CTTCATCCATGGTGGCAGAG+AGG | 0.603440 | 1.3:-58597229 | None:intergenic |
| ATCTGAGCCACATCAGCTGG+AGG | 0.605296 | 1.3:-58598579 | None:intergenic |
| AAACCTGCGTGGTTTGCCAA+GGG | 0.605604 | 1.3:-58594738 | None:intergenic |
| AGGGATGAGAGCTAAAATCT+GGG | 0.606466 | 1.3:-58598694 | None:intergenic |
| CAAGTTTCTCGATGCTTCTG+TGG | 0.606617 | 1.3:+58591531 | MS.gene44107:CDS |
| GGCATGGTCTCAAGCTACAA+AGG | 0.609766 | 1.3:+58597978 | MS.gene44107:intron |
| CGGAAACCTCTCTGCCACCA+TGG | 0.610537 | 1.3:+58597223 | MS.gene44107:CDS |
| AATCAACATCAACAAGCCAT+AGG | 0.617002 | 1.3:+58593027 | MS.gene44107:CDS |
| GCGTTGCCTCAATTGAAGCA+TGG | 0.617652 | 1.3:-58597190 | None:intergenic |
| GAATCACGTCTCCAGTTGAA+GGG | 0.618260 | 1.3:+58592960 | MS.gene44107:intron |
| AATCTAGAAGTGTGAATAAG+CGG | 0.619158 | 1.3:+58588497 | MS.gene44107:CDS |
| GCATATCTATCTCTACCAGA+GGG | 0.620511 | 1.3:+58589836 | MS.gene44107:CDS |
| AGTTGAATACCATTCTATCC+CGG | 0.621666 | 1.3:-58591328 | None:intergenic |
| AGCACTGCTGGAGTTCCTAA+GGG | 0.622103 | 1.3:+58591649 | MS.gene44107:CDS |
| TTACTGCGTGCTGATCAGAA+AGG | 0.622646 | 1.3:+58594154 | MS.gene44107:CDS |
| ACTTGCAGAGTTGTACTGAA+CGG | 0.624851 | 1.3:+58598550 | MS.gene44107:intron |
| TGACAGAATTACCTCCAAAG+AGG | 0.625229 | 1.3:-58591864 | None:intergenic |
| GGCATATCTATCTCTACCAG+AGG | 0.628948 | 1.3:+58589835 | MS.gene44107:intron |
| TGATGACCTTCCTAGTATGT+CGG | 0.630040 | 1.3:+58597275 | MS.gene44107:CDS |
| TGAGCTCATCACTTCATGTG+TGG | 0.634529 | 1.3:+58598227 | MS.gene44107:CDS |
| GTTGAAGGGAGAAAGAATGA+TGG | 0.638179 | 1.3:+58592974 | MS.gene44107:CDS |
| TCTGAGCCACATCAGCTGGA+GGG | 0.645393 | 1.3:-58598578 | None:intergenic |
| TTTCAAGAAGCATTATGCCA+CGG | 0.645708 | 1.3:+58597040 | MS.gene44107:CDS |
| AACTATCCGACATACTAGGA+AGG | 0.646168 | 1.3:-58597281 | None:intergenic |
| GCTTTGGGCTTCATCCATGG+TGG | 0.646183 | 1.3:-58597237 | None:intergenic |
| AAGGATCAATGGCACCGACA+AGG | 0.648478 | 1.3:+58588473 | None:intergenic |
| TTAAGCAGGGCTTCACAAAG+AGG | 0.648843 | 1.3:+58591239 | MS.gene44107:CDS |
| GGAAGGTTTCGAGTATCGCA+CGG | 0.648915 | 1.3:-58598630 | None:intergenic |
| GACGGAGGAGAAGCATGCAG+CGG | 0.650843 | 1.3:+58591730 | MS.gene44107:CDS |
| AGTTCCTTGATGGATATGGA+AGG | 0.652302 | 1.3:+58591622 | MS.gene44107:CDS |
| AGCAGGGCTTCACAAAGAGG+AGG | 0.653229 | 1.3:+58591242 | MS.gene44107:CDS |
| GTTAGGAGTTGAATTCATCA+CGG | 0.655789 | 1.3:+58594997 | MS.gene44107:CDS |
| CTCACCAAAACAAATAAAGA+CGG | 0.659655 | 1.3:+58594114 | MS.gene44107:CDS |
| TTGGACTAGGGAATATCCCA+AGG | 0.661354 | 1.3:+58594570 | MS.gene44107:CDS |
| AATTATCAGCTTGATGACGG+AGG | 0.663340 | 1.3:+58591715 | MS.gene44107:CDS |
| TATACTTGCCTTTGACACAG+TGG | 0.663441 | 1.3:-58593195 | None:intergenic |
| AATTCTCCCCAACAAGTCAG+CGG | 0.664103 | 1.3:+58591824 | MS.gene44107:CDS |
| CTAATAAATTGGGATCTCAG+TGG | 0.665494 | 1.3:+58589271 | MS.gene44107:CDS |
| TAACTAAAGCACTTGAAGAG+GGG | 0.666484 | 1.3:-58595727 | None:intergenic |
| AATGCATGCTTCACCTGTGA+AGG | 0.667655 | 1.3:+58595700 | MS.gene44107:CDS |
| TAGTTTCTCAGACACCACAT+AGG | 0.669340 | 1.3:+58591273 | MS.gene44107:CDS |
| AATGGATCTATTACGTACAG+CGG | 0.676588 | 1.3:-58589527 | None:intergenic |
| CTTTAGCTCTACAAGTACCG+TGG | 0.680662 | 1.3:-58597057 | None:intergenic |
| CAGAGGCAGCTTGAGCACAG+AGG | 0.682588 | 1.3:-58596586 | None:intergenic |
| TCTCAGACACCACATAGGAG+AGG | 0.683376 | 1.3:+58591278 | MS.gene44107:CDS |
| GAGTGGTAAACTGGGACTCG+TGG | 0.685072 | 1.3:-58591113 | None:intergenic |
| ACTGCTGGAGTTCCTAAGGG+AGG | 0.691043 | 1.3:+58591652 | MS.gene44107:CDS |
| GAAGGTAGTCTTGAAAGCAG+GGG | 0.695243 | 1.3:+58591568 | MS.gene44107:CDS |
| ATATGCCCGAAGCTTTGAGG+AGG | 0.696255 | 1.3:+58595600 | MS.gene44107:CDS |
| GGAAACATTATTCTGAGCTG+CGG | 0.699382 | 1.3:+58594819 | MS.gene44107:CDS |
| AAGTGTTCCGAAAACCTGCG+TGG | 0.699640 | 1.3:-58594749 | None:intergenic |
| TGTGGTGTCTGAGAAACTAG+GGG | 0.699681 | 1.3:-58591269 | None:intergenic |
| AAATAAAGTTAAAATTCGTG+CGG | 0.700583 | 1.3:+58593052 | MS.gene44107:CDS |
| AACAGTATCGAGAATCAGTG+AGG | 0.709059 | 1.3:+58594798 | MS.gene44107:CDS |
| GATCTGTCATCATTGCAATG+AGG | 0.714057 | 1.3:-58589877 | None:intergenic |
| GTAGAGCTAAAGGAAGCCAG+TGG | 0.716008 | 1.3:+58597068 | MS.gene44107:CDS |
| GGGATCTCAGTGGAGCAAGG+GGG | 0.723954 | 1.3:+58589281 | MS.gene44107:CDS |
| ATGAATTCAACTCCTAACTG+GGG | 0.726781 | 1.3:-58594992 | None:intergenic |
| CATATCTATCTCTACCAGAG+GGG | 0.741033 | 1.3:+58589837 | MS.gene44107:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 58588481 | 58598722 | 58588481 | ID=MS.gene44107 |
| chr1.3 | mRNA | 58588481 | 58598722 | 58588481 | ID=MS.gene44107.t1;Parent=MS.gene44107 |
| chr1.3 | exon | 58588481 | 58588585 | 58588481 | ID=MS.gene44107.t1.exon1;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58588481 | 58588585 | 58588481 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58589258 | 58589356 | 58589258 | ID=MS.gene44107.t1.exon2;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58589258 | 58589356 | 58589258 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58589520 | 58589582 | 58589520 | ID=MS.gene44107.t1.exon3;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58589520 | 58589582 | 58589520 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58589836 | 58589913 | 58589836 | ID=MS.gene44107.t1.exon4;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58589836 | 58589913 | 58589836 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58590284 | 58590452 | 58590284 | ID=MS.gene44107.t1.exon5;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58590284 | 58590452 | 58590284 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58591081 | 58591340 | 58591081 | ID=MS.gene44107.t1.exon6;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58591081 | 58591340 | 58591081 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58591505 | 58591874 | 58591505 | ID=MS.gene44107.t1.exon7;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58591505 | 58591874 | 58591505 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58592035 | 58592112 | 58592035 | ID=MS.gene44107.t1.exon8;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58592035 | 58592112 | 58592035 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58592961 | 58593208 | 58592961 | ID=MS.gene44107.t1.exon9;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58592961 | 58593208 | 58592961 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58594055 | 58594339 | 58594055 | ID=MS.gene44107.t1.exon10;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58594055 | 58594339 | 58594055 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58594446 | 58594624 | 58594446 | ID=MS.gene44107.t1.exon11;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58594446 | 58594624 | 58594446 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58594736 | 58595018 | 58594736 | ID=MS.gene44107.t1.exon12;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58594736 | 58595018 | 58594736 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58595566 | 58595760 | 58595566 | ID=MS.gene44107.t1.exon13;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58595566 | 58595760 | 58595566 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58596545 | 58596694 | 58596545 | ID=MS.gene44107.t1.exon14;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58596545 | 58596694 | 58596545 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58596954 | 58597094 | 58596954 | ID=MS.gene44107.t1.exon15;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58596954 | 58597094 | 58596954 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58597180 | 58597392 | 58597180 | ID=MS.gene44107.t1.exon16;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58597180 | 58597392 | 58597180 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58597979 | 58598269 | 58597979 | ID=MS.gene44107.t1.exon17;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58597979 | 58598269 | 58597979 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| chr1.3 | exon | 58598558 | 58598722 | 58598558 | ID=MS.gene44107.t1.exon18;Parent=MS.gene44107.t1 |
| chr1.3 | CDS | 58598558 | 58598722 | 58598558 | ID=cds.MS.gene44107.t1;Parent=MS.gene44107.t1 |
| Gene Sequence |
| Protein sequence |
