Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055583.t1 | XP_024638392.1 | 84.8 | 1040 | 89 | 15 | 1 | 975 | 36 | 1071 | 0.00E+00 | 1596.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055583.t1 | Q6A332 | 36.3 | 1068 | 556 | 30 | 4 | 975 | 39 | 1078 | 5.5e-133 | 476.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055583.t1 | A0A072VM38 | 84.0 | 1050 | 89 | 15 | 1 | 975 | 36 | 1081 | 0.0e+00 | 1592.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene055583 | MS.gene005236 | PPI |
MS.gene055583 | MS.gene44107 | PPI |
MS.gene055583 | MS.gene005237 | PPI |
MS.gene056045 | MS.gene055583 | PPI |
MS.gene055583 | MS.gene055582 | PPI |
MS.gene055583 | MS.gene056045 | PPI |
MS.gene005237 | MS.gene055583 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055583.t1 | MTR_1g083040 | 83.810 | 1050 | 91 | 14 | 1 | 975 | 36 | 1081 | 0.0 | 1708 |
MS.gene055583.t1 | MTR_1g083040 | 82.762 | 1050 | 91 | 15 | 1 | 975 | 36 | 1070 | 0.0 | 1680 |
MS.gene055583.t1 | MTR_1g083040 | 82.571 | 1050 | 91 | 15 | 1 | 975 | 36 | 1068 | 0.0 | 1673 |
MS.gene055583.t1 | MTR_1g083040 | 81.524 | 1050 | 91 | 16 | 1 | 975 | 36 | 1057 | 0.0 | 1647 |
MS.gene055583.t1 | MTR_1g083040 | 81.425 | 786 | 78 | 13 | 1 | 722 | 36 | 817 | 0.0 | 1219 |
MS.gene055583.t1 | MTR_4g119390 | 36.322 | 1104 | 535 | 35 | 1 | 975 | 45 | 1109 | 2.97e-153 | 484 |
MS.gene055583.t1 | MTR_4g119390 | 35.727 | 1128 | 544 | 38 | 1 | 975 | 45 | 1144 | 5.90e-147 | 468 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene055583.t1 | AT3G21430 | 36.769 | 1077 | 541 | 32 | 1 | 975 | 36 | 1074 | 3.73e-164 | 511 |
MS.gene055583.t1 | AT3G21430 | 36.769 | 1077 | 541 | 32 | 1 | 975 | 36 | 1074 | 3.73e-164 | 511 |
MS.gene055583.t1 | AT3G21430 | 36.633 | 1081 | 541 | 33 | 1 | 975 | 36 | 1078 | 6.13e-164 | 511 |
MS.gene055583.t1 | AT3G05380 | 39.631 | 868 | 399 | 29 | 6 | 772 | 38 | 881 | 2.77e-150 | 473 |
MS.gene055583.t1 | AT3G05380 | 39.631 | 868 | 399 | 29 | 6 | 772 | 39 | 882 | 2.83e-150 | 473 |
MS.gene055583.t1 | AT3G05380 | 39.631 | 868 | 399 | 29 | 6 | 772 | 39 | 882 | 2.83e-150 | 473 |
MS.gene055583.t1 | AT3G05380 | 39.631 | 868 | 399 | 29 | 6 | 772 | 39 | 882 | 2.83e-150 | 473 |
MS.gene055583.t1 | AT3G05380 | 38.545 | 825 | 386 | 27 | 48 | 772 | 1 | 804 | 2.66e-130 | 418 |
MS.gene055583.t1 | AT5G27610 | 36.737 | 852 | 352 | 35 | 1 | 753 | 34 | 797 | 2.72e-110 | 364 |
Find 201 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCATGAATCTCTCTTGTTT+TGG | 0.149228 | 1.3:+58545144 | None:intergenic |
TAGCTGTTTGTCATCTTATT+TGG | 0.158728 | 1.3:-58545601 | MS.gene055583:CDS |
GAAGAAGTTGTCTAATAAAT+TGG | 0.161696 | 1.3:-58550840 | MS.gene055583:CDS |
ATTAATGGAAATTCAAGTTT+TGG | 0.224585 | 1.3:-58544424 | MS.gene055583:CDS |
CGTCTACTTCTTTGTTTAGT+TGG | 0.235444 | 1.3:+58545830 | None:intergenic |
TTCTTTGAAGGAAAATAATA+TGG | 0.244666 | 1.3:-58548328 | MS.gene055583:CDS |
TTAAACATTCTATGCCATTT+TGG | 0.249911 | 1.3:+58543092 | None:intergenic |
AGCACAGAGGTTACCAATAT+TGG | 0.278915 | 1.3:+58543522 | None:intergenic |
GTACTCCACAAATTCTCTTT+TGG | 0.279992 | 1.3:+58545522 | None:intergenic |
AGTATAGAACCACATATTAA+TGG | 0.291083 | 1.3:-58544439 | MS.gene055583:CDS |
TGATGAATTCAACTCCTAAC+TGG | 0.311762 | 1.3:+58545068 | None:intergenic |
TTGACCGTCTTTATTTGTTT+TGG | 0.312836 | 1.3:+58545938 | None:intergenic |
AAAGCGTGCTCTAGATAAAA+AGG | 0.313137 | 1.3:-58543422 | MS.gene055583:intron |
CGCAGATGGTTTACTTTGAA+TGG | 0.324147 | 1.3:-58545576 | MS.gene055583:CDS |
GTCACTTCCCAGGCCAATAT+TGG | 0.328742 | 1.3:-58543535 | MS.gene055583:CDS |
TCAGAATCTTTGTGCAGTTT+CGG | 0.329467 | 1.3:+58542172 | None:intergenic |
TACTAGTTCCTTGATGGATA+TGG | 0.336948 | 1.3:-58548487 | MS.gene055583:CDS |
TAGAGATACTAGTTCCTTGA+TGG | 0.342926 | 1.3:-58548493 | MS.gene055583:CDS |
GGCATATTGGAAAACCAAAA+TGG | 0.350448 | 1.3:-58543106 | MS.gene055583:CDS |
ATGGCCATCAAAATTTGCTT+TGG | 0.355548 | 1.3:+58542843 | None:intergenic |
AGCCTCGTGCTGTTGGAAAA+AGG | 0.356186 | 1.3:-58549019 | MS.gene055583:CDS |
TTCCATTTGCTGATAAGATA+TGG | 0.360437 | 1.3:-58546891 | MS.gene055583:CDS |
CACGAGCTGTCTCTGACATT+TGG | 0.361609 | 1.3:+58548598 | None:intergenic |
AGATGGACTTCCAACAGATT+TGG | 0.362036 | 1.3:-58545209 | MS.gene055583:CDS |
GTTGAGTGGAGTGTCATAAA+AGG | 0.362992 | 1.3:-58545457 | MS.gene055583:CDS |
GGCTACATTAACCATGATTC+AGG | 0.369905 | 1.3:-58542104 | None:intergenic |
CTTGGATGCTTTGCAAACTT+TGG | 0.371982 | 1.3:-58548056 | MS.gene055583:CDS |
CTCTCAAAAGAAAGATGATC+AGG | 0.373917 | 1.3:-58548973 | MS.gene055583:CDS |
ACTGTCATTGAAATCATTAA+AGG | 0.374232 | 1.3:-58542769 | MS.gene055583:CDS |
GAAAGCAGGGGAGCTGAAAA+TGG | 0.374259 | 1.3:-58548525 | MS.gene055583:CDS |
GCTTCGGGCATATTATCTAA+TGG | 0.375299 | 1.3:+58544502 | None:intergenic |
ATCTGCCTCCTCAAAGCTTC+GGG | 0.377312 | 1.3:+58544487 | None:intergenic |
ATGGCTTGTTGATGTTGATT+CGG | 0.382537 | 1.3:+58547023 | None:intergenic |
GAGCTTCGAAATGCTAATAA+TGG | 0.388504 | 1.3:-58543127 | MS.gene055583:CDS |
AAATGCTAATAATGGCATAT+TGG | 0.389348 | 1.3:-58543119 | MS.gene055583:CDS |
TGGCCATCAAAATTTGCTTT+GGG | 0.396560 | 1.3:+58542844 | None:intergenic |
TCAATCTTTCTCCCTTCAAC+TGG | 0.396796 | 1.3:+58547076 | None:intergenic |
CAATGCTGGATGCTGCATTC+AGG | 0.406951 | 1.3:-58542726 | MS.gene055583:intron |
AGCTTGAAGTCTACTGTTGA+TGG | 0.408517 | 1.3:-58548923 | MS.gene055583:CDS |
CAGTTCGATCGTCCCCAGTT+AGG | 0.409738 | 1.3:-58545082 | MS.gene055583:CDS |
GTCTTTAATTACCTGAATCA+TGG | 0.409754 | 1.3:+58542093 | None:intergenic |
TGGCTTGTTGATGTTGATTC+GGG | 0.410687 | 1.3:+58547024 | None:intergenic |
AATCTGCCTCCTCAAAGCTT+CGG | 0.421550 | 1.3:+58544486 | None:intergenic |
AAAGATGCTATTACGAAGAT+TGG | 0.422259 | 1.3:-58542345 | MS.gene055583:intron |
TTCCATATCTTATCAGCAAA+TGG | 0.431294 | 1.3:+58546889 | None:intergenic |
ACACGTTGTCCAACATATAA+TGG | 0.433131 | 1.3:+58545181 | None:intergenic |
GAGGCAACGCAATACCTATA+CGG | 0.433200 | 1.3:-58542893 | MS.gene055583:CDS |
AAGAGCTTCCACCATTTCAA+TGG | 0.436695 | 1.3:+58550558 | None:intergenic |
AAGAAGTTGTCTAATAAATT+GGG | 0.437836 | 1.3:-58550839 | MS.gene055583:CDS |
CATGAAGTGATGAGCTCAAA+TGG | 0.441310 | 1.3:+58542130 | None:intergenic |
CCGTCTTCTGAAGTAGAATC+TGG | 0.447167 | 1.3:-58548013 | MS.gene055583:intron |
AAGCTCTTTACAATATGAAT+CGG | 0.447230 | 1.3:-58550543 | MS.gene055583:CDS |
ACAGAAAGCATGGTAAAGAT+TGG | 0.448397 | 1.3:-58550772 | MS.gene055583:CDS |
CTTGAATTTCCATTAATATG+TGG | 0.449653 | 1.3:+58544430 | None:intergenic |
TTACGAAGATTGGCAGGCAT+TGG | 0.449990 | 1.3:-58542335 | MS.gene055583:CDS |
CTGATACCATGCTTCAATTG+AGG | 0.455978 | 1.3:-58542912 | MS.gene055583:CDS |
CACTCAACACGAGTTAGCCT+TGG | 0.457331 | 1.3:+58545472 | None:intergenic |
CATTGCATGTGCCTGTAGCC+TGG | 0.458879 | 1.3:+58542744 | None:intergenic |
GTTTGCCAAAAGAGAATTTG+TGG | 0.458990 | 1.3:-58545527 | MS.gene055583:CDS |
CACAGAAGCATCGAGAAACT+TGG | 0.464933 | 1.3:+58548575 | None:intergenic |
AAAGAAAGAGTGGAAAATGT+TGG | 0.469922 | 1.3:-58548414 | MS.gene055583:CDS |
TGCTCAGAGCCGGGATAGAA+TGG | 0.470304 | 1.3:-58548786 | MS.gene055583:intron |
TGGAAGGTAGTCTTGAAAGC+AGG | 0.470580 | 1.3:-58548539 | MS.gene055583:CDS |
AGAATCACGTCTCCAGTTGA+AGG | 0.473764 | 1.3:-58547088 | MS.gene055583:CDS |
TTTCTCGATGCTTCTGTGGA+TGG | 0.475165 | 1.3:-58548570 | MS.gene055583:CDS |
TATCACAGGCAACCTGTACT+TGG | 0.476810 | 1.3:+58542285 | None:intergenic |
AGTTCTCTCCTGCTCAGAGC+CGG | 0.477289 | 1.3:-58548796 | MS.gene055583:CDS |
ATGGAAGGAACGAGCACTGC+TGG | 0.477901 | 1.3:-58548468 | MS.gene055583:CDS |
TGGAAGTAACAGACTGAGAC+TGG | 0.479884 | 1.3:+58549716 | None:intergenic |
ATAATATGCCCGAAGCTTTG+AGG | 0.481922 | 1.3:-58544495 | MS.gene055583:CDS |
CTTAACTAAAGCACTTGAAG+AGG | 0.482863 | 1.3:+58544363 | None:intergenic |
GAGCACTGCTGGAGTTCCTA+AGG | 0.483645 | 1.3:-58548457 | MS.gene055583:CDS |
CATTAAAGGATCCAGGCTAC+AGG | 0.484028 | 1.3:-58542755 | MS.gene055583:CDS |
ATTCTATCCCGGCTCTGAGC+AGG | 0.485679 | 1.3:+58548788 | None:intergenic |
TGGCAGAGAGGTTTCCGTAT+AGG | 0.486136 | 1.3:+58542879 | None:intergenic |
GCTACAGGCACATGCAATGC+TGG | 0.487202 | 1.3:-58542740 | MS.gene055583:CDS |
GTTGAAGGGAGAAAGATTGA+TGG | 0.487498 | 1.3:-58547073 | MS.gene055583:CDS |
TTGAAATCATTAAAGGATCC+AGG | 0.488460 | 1.3:-58542762 | MS.gene055583:CDS |
AATGGTCTTGCCAAATCTGT+TGG | 0.489638 | 1.3:+58545199 | None:intergenic |
CCTTTACTTAACGATGCATC+TGG | 0.490660 | 1.3:-58542196 | MS.gene055583:CDS |
TTGGGATCTCAGTGGAGCAA+GGG | 0.491437 | 1.3:-58550821 | MS.gene055583:CDS |
GCATGCAGCGGCACTGAAGA+AGG | 0.491447 | 1.3:-58548363 | MS.gene055583:CDS |
AGAGGTTACCAATATTGGCC+TGG | 0.491630 | 1.3:+58543527 | None:intergenic |
CATCTTATTTGGTTCGCAGA+TGG | 0.495359 | 1.3:-58545590 | MS.gene055583:CDS |
GCACGCAGTAAAACCTCAAA+AGG | 0.495393 | 1.3:+58545914 | None:intergenic |
AACAGATGAAATCCACGCCT+TGG | 0.497756 | 1.3:-58548074 | MS.gene055583:intron |
GGTCTGCAGCCTCGTGCTGT+TGG | 0.500748 | 1.3:-58549026 | MS.gene055583:CDS |
ACGTAATAGATCCATTGAAA+TGG | 0.501185 | 1.3:-58550569 | MS.gene055583:CDS |
GAACTAACTTCACTTAAAAG+TGG | 0.502840 | 1.3:+58545854 | None:intergenic |
TAATAAGCACTCTACCCAAA+AGG | 0.509532 | 1.3:-58545738 | MS.gene055583:intron |
AGTACAGGTTGCCTGTGATA+AGG | 0.511473 | 1.3:-58542282 | MS.gene055583:CDS |
GAAGAGGGGCGTACCTTCAC+AGG | 0.513156 | 1.3:+58544379 | None:intergenic |
TTTGCTTTGGGCTTCATCCA+TGG | 0.515055 | 1.3:+58542856 | None:intergenic |
GCTAAAGGAAGCCAGTGGAC+AGG | 0.515599 | 1.3:-58543023 | MS.gene055583:intron |
TGGTTCTATACTCGTAAAAG+AGG | 0.516423 | 1.3:+58544450 | None:intergenic |
GTTCTCTCCTGCTCAGAGCC+GGG | 0.518889 | 1.3:-58548795 | MS.gene055583:CDS |
CACGGTACTTGTAGAGCTAA+AGG | 0.519139 | 1.3:-58543038 | MS.gene055583:CDS |
TACTTAAATCATGTTGGACT+AGG | 0.519442 | 1.3:-58545502 | MS.gene055583:CDS |
AGGAAGAGAGTGATAGTGAA+AGG | 0.519581 | 1.3:-58549821 | MS.gene055583:CDS |
CATTATTCTGAGCTGCGGAC+TGG | 0.520480 | 1.3:-58545238 | MS.gene055583:CDS |
AGCTCTTTACAATATGAATC+GGG | 0.520904 | 1.3:-58550542 | MS.gene055583:intron |
ATAGAACTATCCGACATACT+AGG | 0.521403 | 1.3:+58542811 | None:intergenic |
GGAAGAGAGTGATAGTGAAA+GGG | 0.522040 | 1.3:-58549820 | MS.gene055583:CDS |
TTACAGAAAGAAAGAAAGAG+TGG | 0.522065 | 1.3:-58548424 | MS.gene055583:CDS |
GTGGAGTACTTAAATCATGT+TGG | 0.522193 | 1.3:-58545508 | MS.gene055583:CDS |
TTCTGTTCTCCTCTCCTATG+TGG | 0.525089 | 1.3:+58548818 | None:intergenic |
TCAAGTGCTTTAGTTAAGCA+AGG | 0.526265 | 1.3:-58544358 | MS.gene055583:CDS |
CAAAGTTTGCAAAGCATCCA+AGG | 0.526548 | 1.3:+58548057 | None:intergenic |
GGAAATTATCAGCTTGATGA+CGG | 0.526857 | 1.3:-58548393 | MS.gene055583:CDS |
GAAGCCACATGCCTGTCCAC+TGG | 0.527209 | 1.3:+58543012 | None:intergenic |
ATATTATCTAATGGATTCAA+AGG | 0.530582 | 1.3:+58544511 | None:intergenic |
GATGAATTCAACTCCTAACT+GGG | 0.531998 | 1.3:+58545069 | None:intergenic |
TTGGCAAGACCATTATATGT+TGG | 0.532186 | 1.3:-58545190 | MS.gene055583:CDS |
ATGTGGTGTCTGAGAAACTA+GGG | 0.533355 | 1.3:+58548835 | None:intergenic |
ACAACAGAAGCTGTCCCCTC+TGG | 0.533993 | 1.3:+58550252 | None:intergenic |
GACTTATCTTTACGCATGGA+TGG | 0.534395 | 1.3:+58545788 | None:intergenic |
CACAGGCAACCTGTACTTGG+TGG | 0.535612 | 1.3:+58542288 | None:intergenic |
ATAGTGCACTTGATTATCCA+TGG | 0.536074 | 1.3:-58545549 | MS.gene055583:CDS |
ACTGAATTCTGCACTTGTCA+TGG | 0.538319 | 1.3:+58545101 | None:intergenic |
CGGCATCATTAGAGATAGAT+CGG | 0.538917 | 1.3:+58548033 | None:intergenic |
TGCTTTAGTTAAGCAAGGAA+AGG | 0.541102 | 1.3:-58544353 | MS.gene055583:intron |
GGAAGGTAGTCTTGAAAGCA+GGG | 0.541939 | 1.3:-58548538 | MS.gene055583:CDS |
ACTCAACACGAGTTAGCCTT+GGG | 0.542670 | 1.3:+58545473 | None:intergenic |
AGCAGTTGTCCACCAAGTAC+AGG | 0.544298 | 1.3:-58542297 | MS.gene055583:CDS |
TGCTAACCATGTCACTTCCC+AGG | 0.548811 | 1.3:-58543545 | MS.gene055583:CDS |
CTGCGGACTGGTATAAGAGA+TGG | 0.549190 | 1.3:-58545226 | MS.gene055583:CDS |
ATGCTATTACGAAGATTGGC+AGG | 0.549432 | 1.3:-58542341 | MS.gene055583:CDS |
TTAACTAAAGCACTTGAAGA+GGG | 0.552147 | 1.3:+58544364 | None:intergenic |
ATAAGACTTATCTTTACGCA+TGG | 0.553936 | 1.3:+58545784 | None:intergenic |
AGGTCTCAAGATCAAGTGAA+TGG | 0.554399 | 1.3:-58542262 | MS.gene055583:CDS |
CGTTCCTTCCATATCCATCA+AGG | 0.554433 | 1.3:+58548479 | None:intergenic |
TATGTGGTGTCTGAGAAACT+AGG | 0.554615 | 1.3:+58548834 | None:intergenic |
CCAGATGCATCGTTAAGTAA+AGG | 0.554967 | 1.3:+58542196 | None:intergenic |
GAAGCTTTGAGGAGGCAGAT+TGG | 0.556916 | 1.3:-58544484 | MS.gene055583:CDS |
AACTTCAGCTAATGTCTCAA+AGG | 0.561515 | 1.3:-58549746 | MS.gene055583:CDS |
GTTCTATGACACAAGAGTCT+AGG | 0.563001 | 1.3:-58542795 | MS.gene055583:CDS |
ACATACTAGGAAGGTCATCA+TGG | 0.567760 | 1.3:+58542824 | None:intergenic |
TTTGCAAAGCATCCAAGGCG+TGG | 0.570904 | 1.3:+58548062 | None:intergenic |
GAGGTTACCAATATTGGCCT+GGG | 0.571947 | 1.3:+58543528 | None:intergenic |
TTTGAAGGAAAATAATATGG+AGG | 0.574084 | 1.3:-58548325 | MS.gene055583:CDS |
AGGGAGAGCAATGATGCACC+AGG | 0.581666 | 1.3:-58549801 | MS.gene055583:CDS |
TGGGATCTCAGTGGAGCAAG+GGG | 0.581686 | 1.3:-58550820 | MS.gene055583:CDS |
CACTTTACACGGTTGAGCAG+AGG | 0.582929 | 1.3:+58543492 | None:intergenic |
GAATGTTTAAAAGATTCTGA+AGG | 0.583011 | 1.3:-58543079 | MS.gene055583:CDS |
ATTGGGATCTCAGTGGAGCA+AGG | 0.585319 | 1.3:-58550822 | MS.gene055583:CDS |
CCAGATTCTACTTCAGAAGA+CGG | 0.586286 | 1.3:+58548013 | None:intergenic |
ACTTAAATCATGTTGGACTA+GGG | 0.588058 | 1.3:-58545501 | MS.gene055583:CDS |
TATGAAGCATACAGAAAGCA+TGG | 0.589048 | 1.3:-58550782 | MS.gene055583:CDS |
TGATGTTGCATCACTTTACA+CGG | 0.589402 | 1.3:+58543481 | None:intergenic |
GTAACAGACTGAGACTGGAC+AGG | 0.589416 | 1.3:+58549721 | None:intergenic |
CAAGGCTAACTCGTGTTGAG+TGG | 0.590048 | 1.3:-58545471 | MS.gene055583:CDS |
TATTGGCCTGGGAAGTGACA+TGG | 0.591157 | 1.3:+58543539 | None:intergenic |
TAATAGATCCATTGAAATGG+TGG | 0.592802 | 1.3:-58550566 | MS.gene055583:CDS |
AAAACAAGAGAGATTCATGA+TGG | 0.598180 | 1.3:-58545142 | MS.gene055583:CDS |
TGATCTTGAGACCTTATCAC+AGG | 0.600930 | 1.3:+58542271 | None:intergenic |
GCATGGTAAAGATTGGAAGA+AGG | 0.602065 | 1.3:-58550765 | MS.gene055583:CDS |
CTTCATCCATGGTGGCAGAG+AGG | 0.603440 | 1.3:+58542867 | None:intergenic |
CAAGTTTCTCGATGCTTCTG+TGG | 0.606617 | 1.3:-58548574 | MS.gene055583:CDS |
TCTCAAAAGAAAGATGATCA+GGG | 0.608139 | 1.3:-58548972 | MS.gene055583:CDS |
CGGAAACCTCTCTGCCACCA+TGG | 0.610537 | 1.3:-58542873 | MS.gene055583:CDS |
AATCAACATCAACAAGCCAT+AGG | 0.617002 | 1.3:-58547020 | MS.gene055583:CDS |
GCGTTGCCTCAATTGAAGCA+TGG | 0.617652 | 1.3:+58542906 | None:intergenic |
GAATCACGTCTCCAGTTGAA+GGG | 0.618260 | 1.3:-58547087 | MS.gene055583:CDS |
GCATATCTATCTCTACCAGA+GGG | 0.620511 | 1.3:-58550267 | MS.gene055583:CDS |
AGTTGAATACCATTCTATCC+CGG | 0.621666 | 1.3:+58548777 | None:intergenic |
AGCACTGCTGGAGTTCCTAA+GGG | 0.622103 | 1.3:-58548456 | MS.gene055583:CDS |
TTACTGCGTGCTGATCAGAA+AGG | 0.622646 | 1.3:-58545902 | MS.gene055583:CDS |
GGCATATCTATCTCTACCAG+AGG | 0.628948 | 1.3:-58550268 | MS.gene055583:CDS |
TGATGACCTTCCTAGTATGT+CGG | 0.630040 | 1.3:-58542821 | MS.gene055583:CDS |
TGAGCTCATCACTTCATGTG+TGG | 0.634529 | 1.3:-58542125 | MS.gene055583:CDS |
TTTCAAGAAGCATTATGCCA+CGG | 0.645708 | 1.3:-58543056 | MS.gene055583:CDS |
AACTATCCGACATACTAGGA+AGG | 0.646168 | 1.3:+58542815 | None:intergenic |
GCTTTGGGCTTCATCCATGG+TGG | 0.646183 | 1.3:+58542859 | None:intergenic |
TTAAGCAGGGCTTCACAAAG+AGG | 0.648843 | 1.3:-58548866 | MS.gene055583:CDS |
GACGGAGGAGAAGCATGCAG+CGG | 0.650843 | 1.3:-58548375 | MS.gene055583:CDS |
AGTTCCTTGATGGATATGGA+AGG | 0.652302 | 1.3:-58548483 | MS.gene055583:CDS |
AGCAGGGCTTCACAAAGAGG+AGG | 0.653229 | 1.3:-58548863 | MS.gene055583:CDS |
GTTAGGAGTTGAATTCATCA+CGG | 0.655789 | 1.3:-58545065 | MS.gene055583:intron |
CTCACCAAAACAAATAAAGA+CGG | 0.659655 | 1.3:-58545942 | MS.gene055583:CDS |
TTGGACTAGGGAATATCCCA+AGG | 0.661354 | 1.3:-58545489 | MS.gene055583:CDS |
AATTATCAGCTTGATGACGG+AGG | 0.663340 | 1.3:-58548390 | MS.gene055583:CDS |
CTAATAAATTGGGATCTCAG+TGG | 0.665494 | 1.3:-58550829 | MS.gene055583:CDS |
TAACTAAAGCACTTGAAGAG+GGG | 0.666484 | 1.3:+58544365 | None:intergenic |
AATGCATGCTTCACCTGTGA+AGG | 0.667655 | 1.3:-58544392 | MS.gene055583:CDS |
TAGTTTCTCAGACACCACAT+AGG | 0.669340 | 1.3:-58548832 | MS.gene055583:CDS |
AATGGATCTATTACGTACAG+CGG | 0.676588 | 1.3:+58550576 | None:intergenic |
CTTTAGCTCTACAAGTACCG+TGG | 0.680662 | 1.3:+58543039 | None:intergenic |
CAGAGGCAGCTTGAGCACAG+AGG | 0.682588 | 1.3:+58543509 | None:intergenic |
TCTCAGACACCACATAGGAG+AGG | 0.683376 | 1.3:-58548827 | MS.gene055583:CDS |
GAGTGGTAAACTGGGACTCG+TGG | 0.685072 | 1.3:+58548993 | None:intergenic |
ACTGCTGGAGTTCCTAAGGG+AGG | 0.691043 | 1.3:-58548453 | MS.gene055583:CDS |
GAAGGTAGTCTTGAAAGCAG+GGG | 0.695243 | 1.3:-58548537 | MS.gene055583:CDS |
ATATGCCCGAAGCTTTGAGG+AGG | 0.696255 | 1.3:-58544492 | MS.gene055583:CDS |
GGAAACATTATTCTGAGCTG+CGG | 0.699382 | 1.3:-58545243 | MS.gene055583:CDS |
TGTGGTGTCTGAGAAACTAG+GGG | 0.699681 | 1.3:+58548836 | None:intergenic |
AAATAAAGTTAAAATTCGTG+CGG | 0.700583 | 1.3:-58546995 | MS.gene055583:CDS |
AACAGTATCGAGAATCAGTG+AGG | 0.709059 | 1.3:-58545264 | MS.gene055583:CDS |
GTAGAGCTAAAGGAAGCCAG+TGG | 0.716008 | 1.3:-58543028 | MS.gene055583:CDS |
GGGATCTCAGTGGAGCAAGG+GGG | 0.723954 | 1.3:-58550819 | MS.gene055583:CDS |
ATGAATTCAACTCCTAACTG+GGG | 0.726781 | 1.3:+58545070 | None:intergenic |
CATATCTATCTCTACCAGAG+GGG | 0.741033 | 1.3:-58550266 | MS.gene055583:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 58542105 | 58550864 | 58542105 | ID=MS.gene055583 |
chr1.3 | mRNA | 58542105 | 58550864 | 58542105 | ID=MS.gene055583.t1;Parent=MS.gene055583 |
chr1.3 | exon | 58550756 | 58550864 | 58550756 | ID=MS.gene055583.t1.exon1;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58550756 | 58550864 | 58550756 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58550543 | 58550604 | 58550543 | ID=MS.gene055583.t1.exon2;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58550543 | 58550604 | 58550543 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58550254 | 58550289 | 58550254 | ID=MS.gene055583.t1.exon3;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58550254 | 58550289 | 58550254 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58549716 | 58549841 | 58549716 | ID=MS.gene055583.t1.exon4;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58549716 | 58549841 | 58549716 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58548787 | 58549047 | 58548787 | ID=MS.gene055583.t1.exon5;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58548787 | 58549047 | 58548787 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58548289 | 58548622 | 58548289 | ID=MS.gene055583.t1.exon6;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58548289 | 58548622 | 58548289 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58548014 | 58548091 | 58548014 | ID=MS.gene055583.t1.exon7;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58548014 | 58548091 | 58548014 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58546870 | 58547108 | 58546870 | ID=MS.gene055583.t1.exon8;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58546870 | 58547108 | 58546870 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58545739 | 58546023 | 58545739 | ID=MS.gene055583.t1.exon9;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58545739 | 58546023 | 58545739 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58545414 | 58545620 | 58545414 | ID=MS.gene055583.t1.exon10;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58545414 | 58545620 | 58545414 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58545066 | 58545296 | 58545066 | ID=MS.gene055583.t1.exon11;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58545066 | 58545296 | 58545066 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58544354 | 58544548 | 58544354 | ID=MS.gene055583.t1.exon12;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58544354 | 58544548 | 58544354 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58543423 | 58543572 | 58543423 | ID=MS.gene055583.t1.exon13;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58543423 | 58543572 | 58543423 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58543024 | 58543164 | 58543024 | ID=MS.gene055583.t1.exon14;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58543024 | 58543164 | 58543024 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58542727 | 58542938 | 58542727 | ID=MS.gene055583.t1.exon15;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58542727 | 58542938 | 58542727 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
chr1.3 | exon | 58542105 | 58542363 | 58542105 | ID=MS.gene055583.t1.exon16;Parent=MS.gene055583.t1 |
chr1.3 | CDS | 58542105 | 58542363 | 58542105 | ID=cds.MS.gene055583.t1;Parent=MS.gene055583.t1 |
Gene Sequence |
Protein sequence |