Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005239.t1 | XP_003591123.2 | 95.5 | 331 | 15 | 0 | 1 | 331 | 1 | 331 | 5.00E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005239.t1 | Q8W5S1 | 64.2 | 310 | 108 | 2 | 1 | 309 | 1 | 308 | 3.4e-111 | 402.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005239.t1 | G7I853 | 95.5 | 331 | 15 | 0 | 1 | 331 | 1 | 331 | 3.6e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005239 | MS.gene85689 | PPI |
| MS.gene005239 | MS.gene07051 | PPI |
| MS.gene005239 | MS.gene55900 | PPI |
| MS.gene35086 | MS.gene005239 | PPI |
| MS.gene042336 | MS.gene005239 | PPI |
| MS.gene28807 | MS.gene005239 | PPI |
| MS.gene22500 | MS.gene005239 | PPI |
| MS.gene005239 | MS.gene05320 | PPI |
| MS.gene67884 | MS.gene005239 | PPI |
| MS.gene59983 | MS.gene005239 | PPI |
| MS.gene006153 | MS.gene005239 | PPI |
| MS.gene005239 | MS.gene00063 | PPI |
| MS.gene005239 | MS.gene60694 | PPI |
| MS.gene005239 | MS.gene59231 | PPI |
| MS.gene072702 | MS.gene005239 | PPI |
| MS.gene005239 | MS.gene67980 | PPI |
| MS.gene005239 | MS.gene88917 | PPI |
| MS.gene005239 | MS.gene028366 | PPI |
| MS.gene81861 | MS.gene005239 | PPI |
| MS.gene36424 | MS.gene005239 | PPI |
| MS.gene005239 | MS.gene80419 | PPI |
| MS.gene28739 | MS.gene005239 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005239.t1 | MTR_1g083060 | 97.281 | 331 | 9 | 0 | 1 | 331 | 1 | 331 | 0.0 | 679 |
| MS.gene005239.t1 | MTR_7g055650 | 28.571 | 182 | 111 | 5 | 71 | 243 | 30 | 201 | 1.04e-12 | 67.4 |
| MS.gene005239.t1 | MTR_7g055650 | 28.571 | 182 | 111 | 5 | 71 | 243 | 30 | 201 | 1.10e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005239.t1 | AT5G27620 | 64.350 | 331 | 115 | 2 | 1 | 330 | 1 | 329 | 1.27e-160 | 452 |
| MS.gene005239.t1 | AT5G27620 | 64.194 | 310 | 108 | 2 | 1 | 309 | 1 | 308 | 2.02e-149 | 425 |
| MS.gene005239.t1 | AT5G27620 | 63.214 | 280 | 101 | 1 | 1 | 280 | 1 | 278 | 1.56e-132 | 379 |
| MS.gene005239.t1 | AT5G48640 | 27.624 | 181 | 112 | 3 | 71 | 242 | 30 | 200 | 8.70e-14 | 70.5 |
| MS.gene005239.t1 | AT5G48630 | 27.072 | 181 | 113 | 4 | 71 | 242 | 30 | 200 | 2.44e-13 | 69.3 |
| MS.gene005239.t1 | AT5G48630 | 27.072 | 181 | 113 | 4 | 71 | 242 | 33 | 203 | 5.39e-13 | 68.6 |
| MS.gene005239.t1 | AT5G48640 | 29.605 | 152 | 88 | 3 | 100 | 242 | 11 | 152 | 1.09e-11 | 63.9 |
Find 65 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCATTTGAGCTCTTTC+TGG | 0.098229 | 1.4:-67141149 | None:intergenic |
| CCCAACAAGACTTCAGTTTC+CGG | 0.228077 | 1.4:-67140987 | None:intergenic |
| GGTTTGTTTGGCTCTCTTAT+TGG | 0.232116 | 1.4:-67138040 | None:intergenic |
| CGTTGGATGCAATTGATTCT+TGG | 0.292098 | 1.4:+67140780 | MS.gene005239:CDS |
| CTTCCTGATGCAGTTGGCCT+TGG | 0.318317 | 1.4:+67140474 | MS.gene005239:intron |
| ACAGGTGTCTAGGGTTTGTT+TGG | 0.333922 | 1.4:-67138052 | None:intergenic |
| TAATGAGATGATAGTTTATC+AGG | 0.337761 | 1.4:+67139125 | MS.gene005239:CDS |
| TGACCATTATCGTTAGCATT+GGG | 0.380220 | 1.4:-67138132 | None:intergenic |
| GTTGGATGCAATTGATTCTT+GGG | 0.388804 | 1.4:+67140781 | MS.gene005239:CDS |
| AAACCTTCAACTGAGCGATA+TGG | 0.395753 | 1.4:-67139281 | None:intergenic |
| CTATCTGCAATGGTCTGTTA+TGG | 0.415035 | 1.4:+67138490 | MS.gene005239:CDS |
| GCTCCATATCGCTCAGTTGA+AGG | 0.415110 | 1.4:+67139278 | MS.gene005239:CDS |
| CCGGAAACTGAAGTCTTGTT+GGG | 0.418631 | 1.4:+67140987 | MS.gene005239:CDS |
| TTAGCATTGGGGTGGGGTTG+AGG | 0.418682 | 1.4:-67138120 | None:intergenic |
| CACCCCAATGCTAACGATAA+TGG | 0.419389 | 1.4:+67138129 | MS.gene005239:CDS |
| TGAAGAAGAACAAAGTATAA+AGG | 0.425628 | 1.4:+67138288 | MS.gene005239:CDS |
| ACCGGAAACTGAAGTCTTGT+TGG | 0.428548 | 1.4:+67140986 | MS.gene005239:CDS |
| TTGCATACCTGGATCTTATG+AGG | 0.448683 | 1.4:-67138358 | None:intergenic |
| AGGAATTGAAGCACATCAAC+CGG | 0.450036 | 1.4:+67140968 | MS.gene005239:CDS |
| GACTGAGCTTCTTGAATCGT+TGG | 0.450946 | 1.4:+67140763 | MS.gene005239:CDS |
| GAGTAGCTCCACAGGTGTCT+AGG | 0.457734 | 1.4:-67138062 | None:intergenic |
| CACCTGTGGAGCTACTCTAA+TGG | 0.466483 | 1.4:+67138068 | MS.gene005239:CDS |
| TGTTCTTCTTCAATACTAAG+AGG | 0.468829 | 1.4:-67138277 | None:intergenic |
| TTGACCATTATCGTTAGCAT+TGG | 0.469740 | 1.4:-67138133 | None:intergenic |
| TGTCAAAATCAACAACTGTA+TGG | 0.471508 | 1.4:-67140522 | None:intergenic |
| AACTGTATGGAGTGCATTTG+AGG | 0.472899 | 1.4:-67140509 | None:intergenic |
| TTTGCAAAACACAGCAAGAC+TGG | 0.473114 | 1.4:+67140323 | MS.gene005239:CDS |
| TCACTTCCCTCATAAGATCC+AGG | 0.475811 | 1.4:+67138351 | MS.gene005239:CDS |
| GCACCACTCTTATTTCCTCC+TGG | 0.480232 | 1.4:+67140372 | MS.gene005239:CDS |
| CATGTATCGGCTGAGGAGCT+TGG | 0.496976 | 1.4:+67139066 | MS.gene005239:CDS |
| AGTAGCTCCACAGGTGTCTA+GGG | 0.501776 | 1.4:-67138061 | None:intergenic |
| TTAAAAGGTTCTATCTGCAA+TGG | 0.504235 | 1.4:+67138480 | MS.gene005239:CDS |
| TGTCAGGTGAAAAGCATTCT+CGG | 0.505166 | 1.4:+67138248 | MS.gene005239:intron |
| ATCGGCTGAGGAGCTTGGTA+AGG | 0.506701 | 1.4:+67139071 | MS.gene005239:CDS |
| TGCTTCAATTCCTTCTCTGA+AGG | 0.513492 | 1.4:-67140958 | None:intergenic |
| TTATCGTTAGCATTGGGGTG+GGG | 0.515103 | 1.4:-67138126 | None:intergenic |
| CATTATCGTTAGCATTGGGG+TGG | 0.522977 | 1.4:-67138128 | None:intergenic |
| ATTATCGTTAGCATTGGGGT+GGG | 0.523584 | 1.4:-67138127 | None:intergenic |
| ACTCTTATTTCCTCCTGGAC+AGG | 0.527100 | 1.4:+67140377 | MS.gene005239:CDS |
| CCACTTCGATCGGTGGGTAG+AGG | 0.529859 | 1.4:-67137977 | None:intergenic |
| TATTCTGAGAATACCTGTCC+AGG | 0.550892 | 1.4:-67140390 | None:intergenic |
| TTCCATTAGAGTAGCTCCAC+AGG | 0.551419 | 1.4:-67138070 | None:intergenic |
| GATAGAAGAAAATCATGTAT+CGG | 0.553426 | 1.4:+67139053 | MS.gene005239:CDS |
| TCGGCTGAGGAGCTTGGTAA+GGG | 0.553857 | 1.4:+67139072 | MS.gene005239:CDS |
| GCTTAACAGGGGAAAGAAGA+GGG | 0.556084 | 1.4:+67141105 | MS.gene005239:intron |
| GACCATTATCGTTAGCATTG+GGG | 0.558575 | 1.4:-67138131 | None:intergenic |
| AGAAAATCATGTATCGGCTG+AGG | 0.576466 | 1.4:+67139059 | MS.gene005239:CDS |
| TGAGGTACGCAGAGCAGCCA+AGG | 0.578460 | 1.4:-67140491 | None:intergenic |
| GAAGATCCACTTCGATCGGT+GGG | 0.579541 | 1.4:-67137983 | None:intergenic |
| AGAAGATCCACTTCGATCGG+TGG | 0.581026 | 1.4:-67137984 | None:intergenic |
| TTGTGTGCGTAGAATTCTGA+TGG | 0.581145 | 1.4:-67140739 | None:intergenic |
| CTTACAAGCAGCATATATGC+AGG | 0.582043 | 1.4:-67139031 | None:intergenic |
| CTAATGGAAGTTGATGTTGA+CGG | 0.583168 | 1.4:+67138084 | MS.gene005239:CDS |
| ATACAGAAGTCCTTCAGAGA+AGG | 0.596787 | 1.4:+67140948 | MS.gene005239:CDS |
| TGCATACCTGGATCTTATGA+GGG | 0.596868 | 1.4:-67138357 | None:intergenic |
| GAGAGAAGATCCACTTCGAT+CGG | 0.599043 | 1.4:-67137987 | None:intergenic |
| CCTCTACCCACCGATCGAAG+TGG | 0.606180 | 1.4:+67137977 | MS.gene005239:CDS |
| AGTACTCGTCATGAGAGCTA+TGG | 0.621111 | 1.4:-67141011 | None:intergenic |
| TGCTTAACAGGGGAAAGAAG+AGG | 0.625334 | 1.4:+67141104 | MS.gene005239:intron |
| CGGCTGAGGAGCTTGGTAAG+GGG | 0.626783 | 1.4:+67139073 | MS.gene005239:CDS |
| CGGAAACTGAAGTCTTGTTG+GGG | 0.643818 | 1.4:+67140988 | MS.gene005239:CDS |
| TGTCCAGGAGGAAATAAGAG+TGG | 0.685097 | 1.4:-67140375 | None:intergenic |
| AAACAAACCCTAGACACCTG+TGG | 0.692987 | 1.4:+67138054 | MS.gene005239:CDS |
| TCTGAGAATACCTGTCCAGG+AGG | 0.717815 | 1.4:-67140387 | None:intergenic |
| TGTGTGCGTAGAATTCTGAT+GGG | 0.731660 | 1.4:-67140738 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr1.4:67140109-67140128 | MS.gene005239:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr1.4:67140128-67140109 | None:intergenic | 0.0% |
| !! | ATATATATATATATATAGGA+AGG | - | chr1.4:67140178-67140159 | None:intergenic | 10.0% |
| !!! | AAATCTTACATTATATTTTT+TGG | - | chr1.4:67138524-67138543 | None:intergenic | 10.0% |
| !! | AAGAATATTAAATCTAACAA+TGG | - | chr1.4:67140434-67140453 | None:intergenic | 15.0% |
| !! | ATCATTAAAAATTGTGTTAA+CGG | - | chr1.4:67139441-67139460 | None:intergenic | 15.0% |
| !!! | CACAATTTTTAATGATTTTA+TGG | + | chr1.4:67139445-67139464 | MS.gene005239:intron | 15.0% |
| !!! | CTATTTCAAAATATTGATTA+CGG | - | chr1.4:67138427-67138446 | None:intergenic | 15.0% |
| !!! | TATAGAGTAAAAGATTTTTA+TGG | - | chr1.4:67139750-67139769 | None:intergenic | 15.0% |
| !!! | TTTTTTTGCAAAATTAAGTA+GGG | + | chr1.4:67138563-67138582 | MS.gene005239:intron | 15.0% |
| !! | ATTGTTAAAAAATTGAGGAA+TGG | - | chr1.4:67139656-67139675 | None:intergenic | 20.0% |
| !! | CACTAATTGTTAAAAAATTG+AGG | - | chr1.4:67139661-67139680 | None:intergenic | 20.0% |
| !! | TATTAGTTGTTTGAAAATGT+TGG | + | chr1.4:67138627-67138646 | MS.gene005239:intron | 20.0% |
| !! | TTGATATCATTTGTTTGATT+AGG | + | chr1.4:67138756-67138775 | MS.gene005239:intron | 20.0% |
| !!! | ATAATTTTGTATTGCTTAAC+AGG | + | chr1.4:67141092-67141111 | MS.gene005239:intron | 20.0% |
| !!! | CTCAATTTTTTAACAATTAG+TGG | + | chr1.4:67139659-67139678 | MS.gene005239:intron | 20.0% |
| !!! | CTTTCTCTCATTTTATTTTT+CGG | + | chr1.4:67139392-67139411 | MS.gene005239:intron | 20.0% |
| !!! | GTTTTTTTGCAAAATTAAGT+AGG | + | chr1.4:67138562-67138581 | MS.gene005239:intron | 20.0% |
| !!! | TAATTTTGTATTGCTTAACA+GGG | + | chr1.4:67141093-67141112 | MS.gene005239:intron | 20.0% |
| !!! | TTAATTTTGATCATTCACAT+AGG | - | chr1.4:67140053-67140072 | None:intergenic | 20.0% |
| ! | AAAATAAGTAATCAGTTCCA+AGG | - | chr1.4:67138734-67138753 | None:intergenic | 25.0% |
| ! | AAATAAGTAATCAGTTCCAA+GGG | - | chr1.4:67138733-67138752 | None:intergenic | 25.0% |
| ! | AGAAAATATTGCTTCATAAG+AGG | - | chr1.4:67140223-67140242 | None:intergenic | 25.0% |
| ! | ATAAGCTATCTAAAGAATCT+AGG | - | chr1.4:67138849-67138868 | None:intergenic | 25.0% |
| ! | ATGAAACAAATAACAGCTAA+TGG | - | chr1.4:67140604-67140623 | None:intergenic | 25.0% |
| ! | ATTACCAAGCTAATAAAACA+TGG | - | chr1.4:67140869-67140888 | None:intergenic | 25.0% |
| ! | GAAAATATTGCTTCATAAGA+GGG | - | chr1.4:67140222-67140241 | None:intergenic | 25.0% |
| ! | GATAGAAGAAAATCATGTAT+CGG | + | chr1.4:67139053-67139072 | MS.gene005239:CDS | 25.0% |
| ! | GCTAATAAAACATGGAAATT+TGG | - | chr1.4:67140861-67140880 | None:intergenic | 25.0% |
| ! | TAATGAGATGATAGTTTATC+AGG | + | chr1.4:67139125-67139144 | MS.gene005239:CDS | 25.0% |
| ! | TCATTACTTAATATTTGTCC+AGG | + | chr1.4:67139682-67139701 | MS.gene005239:intron | 25.0% |
| ! | TGAAATAGTTTATGTTACAC+AGG | + | chr1.4:67138439-67138458 | MS.gene005239:intron | 25.0% |
| ! | TGAAGAAGAACAAAGTATAA+AGG | + | chr1.4:67138288-67138307 | MS.gene005239:CDS | 25.0% |
| ! | TTGTTTGAAAATGTTGGAAT+TGG | + | chr1.4:67138633-67138652 | MS.gene005239:intron | 25.0% |
| !! | AATTTTGTATTGCTTAACAG+GGG | + | chr1.4:67141094-67141113 | MS.gene005239:intron | 25.0% |
| !! | TATTTCTCAACCAATTTTTG+AGG | - | chr1.4:67138012-67138031 | None:intergenic | 25.0% |
| !! | TCATTAATCTTTTTATCCCT+TGG | + | chr1.4:67138714-67138733 | MS.gene005239:intron | 25.0% |
| !!! | AGAACCTTTTAAAAAAGATG+AGG | - | chr1.4:67138472-67138491 | None:intergenic | 25.0% |
| !!! | ATTTCCATGTTTTATTAGCT+TGG | + | chr1.4:67140862-67140881 | MS.gene005239:intron | 25.0% |
| !!! | GAACCTTTTAAAAAAGATGA+GGG | - | chr1.4:67138471-67138490 | None:intergenic | 25.0% |
| !!! | GTTAGCTATTTCTTTATACT+TGG | - | chr1.4:67140269-67140288 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTACATATAGGA+GGG | + | chr1.4:67139620-67139639 | MS.gene005239:intron | 25.0% |
| !!! | TTTTTTCCTGCATAATAATC+AGG | + | chr1.4:67139553-67139572 | MS.gene005239:intron | 25.0% |
| AAAAAATTGAGGAATGGTAC+TGG | - | chr1.4:67139650-67139669 | None:intergenic | 30.0% | |
| AAACACAATCGCATAATATC+GGG | - | chr1.4:67138888-67138907 | None:intergenic | 30.0% | |
| AATTCTACGTAAAAGGGTAA+AGG | - | chr1.4:67141038-67141057 | None:intergenic | 30.0% | |
| CAAACACAATCGCATAATAT+CGG | - | chr1.4:67138889-67138908 | None:intergenic | 30.0% | |
| CTAGAACAATTTGATATACG+AGG | - | chr1.4:67139161-67139180 | None:intergenic | 30.0% | |
| CTTTATACTTGGAGAAGAAT+AGG | - | chr1.4:67140258-67140277 | None:intergenic | 30.0% | |
| TACAAGTACATACATACAAG+AGG | - | chr1.4:67138917-67138936 | None:intergenic | 30.0% | |
| TGAAAATGTTGGAATTGGTT+AGG | + | chr1.4:67138638-67138657 | MS.gene005239:intron | 30.0% | |
| TGAACTGAAATTTGTGACTA+TGG | + | chr1.4:67139468-67139487 | MS.gene005239:intron | 30.0% | |
| TGTCAAAATCAACAACTGTA+TGG | - | chr1.4:67140525-67140544 | None:intergenic | 30.0% | |
| TGTTCTTCTTCAATACTAAG+AGG | - | chr1.4:67138280-67138299 | None:intergenic | 30.0% | |
| TTAAAAGGTTCTATCTGCAA+TGG | + | chr1.4:67138480-67138499 | MS.gene005239:CDS | 30.0% | |
| TTACAAGTAGACAAGATACA+TGG | - | chr1.4:67139861-67139880 | None:intergenic | 30.0% | |
| ! | ATTAGTGGATGGAATTTCTT+TGG | + | chr1.4:67139596-67139615 | MS.gene005239:intron | 30.0% |
| ! | TGAAGGTTTTACAGATTCTA+TGG | + | chr1.4:67139295-67139314 | MS.gene005239:CDS | 30.0% |
| ! | TGATAGGAATTTTGCAATTC+TGG | + | chr1.4:67139495-67139514 | MS.gene005239:intron | 30.0% |
| ! | TTCAGACTCATTGATTGTTA+TGG | + | chr1.4:67138587-67138606 | MS.gene005239:intron | 30.0% |
| !! | CTTATGGTTTTACATATAGG+AGG | + | chr1.4:67139619-67139638 | MS.gene005239:intron | 30.0% |
| !! | TGGCTTATGGTTTTACATAT+AGG | + | chr1.4:67139616-67139635 | MS.gene005239:intron | 30.0% |
| !!! | ATACAGTTGTTGATTTTGAC+AGG | + | chr1.4:67140524-67140543 | MS.gene005239:CDS | 30.0% |
| !!! | GTGGTTTTATTCTGTTTACA+TGG | + | chr1.4:67140889-67140908 | MS.gene005239:intron | 30.0% |
| !!! | GTTTTATTAGCTTGGTAATG+TGG | + | chr1.4:67140870-67140889 | MS.gene005239:intron | 30.0% |
| AACAGGCAATTCTACGTAAA+AGG | - | chr1.4:67141045-67141064 | None:intergenic | 35.0% | |
| AATGCCCTCTTGAACATAAA+GGG | + | chr1.4:67139933-67139952 | MS.gene005239:intron | 35.0% | |
| ACAGGCAATTCTACGTAAAA+GGG | - | chr1.4:67141044-67141063 | None:intergenic | 35.0% | |
| ACAGTGTTGCCATAATTATG+AGG | - | chr1.4:67138396-67138415 | None:intergenic | 35.0% | |
| AGATGATAGTTTATCAGGCA+CGG | + | chr1.4:67139130-67139149 | MS.gene005239:intron | 35.0% | |
| AGGAGTAGACACATTAATCT+GGG | - | chr1.4:67140682-67140701 | None:intergenic | 35.0% | |
| ATATTGCTTCATAAGAGGGA+AGG | - | chr1.4:67140218-67140237 | None:intergenic | 35.0% | |
| CAAACTACATATCAAGTGAG+AGG | + | chr1.4:67140003-67140022 | MS.gene005239:intron | 35.0% | |
| CAGGGTTTATTGTCATTGAT+GGG | - | chr1.4:67139222-67139241 | None:intergenic | 35.0% | |
| CAGTGTTGCCATAATTATGA+GGG | - | chr1.4:67138395-67138414 | None:intergenic | 35.0% | |
| CATTTGTTTGATTAGGTTCG+TGG | + | chr1.4:67138763-67138782 | MS.gene005239:intron | 35.0% | |
| CTTCTCTTCCCTCATAATTA+TGG | + | chr1.4:67138384-67138403 | MS.gene005239:intron | 35.0% | |
| GATCTTCTCTCCTCAAAAAT+TGG | + | chr1.4:67137999-67138018 | MS.gene005239:CDS | 35.0% | |
| TAGGAGTAGACACATTAATC+TGG | - | chr1.4:67140683-67140702 | None:intergenic | 35.0% | |
| TATTGCTTCATAAGAGGGAA+GGG | - | chr1.4:67140217-67140236 | None:intergenic | 35.0% | |
| TGACCATTATCGTTAGCATT+GGG | - | chr1.4:67138135-67138154 | None:intergenic | 35.0% | |
| TTGACCATTATCGTTAGCAT+TGG | - | chr1.4:67138136-67138155 | None:intergenic | 35.0% | |
| TTGTGACTATGGTCATTGAT+AGG | + | chr1.4:67139479-67139498 | MS.gene005239:intron | 35.0% | |
| ! | AGCTAATGGAAACTGTTTTC+GGG | - | chr1.4:67140590-67140609 | None:intergenic | 35.0% |
| ! | AGGTTTTACAGATTCTATGG+AGG | + | chr1.4:67139298-67139317 | MS.gene005239:CDS | 35.0% |
| ! | CAGCTAATGGAAACTGTTTT+CGG | - | chr1.4:67140591-67140610 | None:intergenic | 35.0% |
| ! | GATGGAATTTCTTTGGCTTA+TGG | + | chr1.4:67139603-67139622 | MS.gene005239:intron | 35.0% |
| ! | GTTGGATGCAATTGATTCTT+GGG | + | chr1.4:67140781-67140800 | MS.gene005239:CDS | 35.0% |
| ! | TTGAGATCGTTTCAAGCTTT+TGG | + | chr1.4:67139706-67139725 | MS.gene005239:intron | 35.0% |
| !! | CTAATGGAAGTTGATGTTGA+CGG | + | chr1.4:67138084-67138103 | MS.gene005239:CDS | 35.0% |
| !!! | CAGCCCTCATCTTTTTTAAA+AGG | + | chr1.4:67138465-67138484 | MS.gene005239:CDS | 35.0% |
| !!! | TACTTTTTCTCCTGCTGTAT+AGG | + | chr1.4:67140299-67140318 | MS.gene005239:intron | 35.0% |
| !!! | TTTCAAGCTTTTGGAACTGT+AGG | + | chr1.4:67139715-67139734 | MS.gene005239:intron | 35.0% |
| AAAACTGCAAGTGCAAGTGT+AGG | - | chr1.4:67140702-67140721 | None:intergenic | 40.0% | |
| AAACCTTCAACTGAGCGATA+TGG | - | chr1.4:67139284-67139303 | None:intergenic | 40.0% | |
| AACTGTATGGAGTGCATTTG+AGG | - | chr1.4:67140512-67140531 | None:intergenic | 40.0% | |
| AAGAGAAGAGATTGCATACC+TGG | - | chr1.4:67138372-67138391 | None:intergenic | 40.0% | |
| AGGAATTGAAGCACATCAAC+CGG | + | chr1.4:67140968-67140987 | MS.gene005239:CDS | 40.0% | |
| ATACAGAAGTCCTTCAGAGA+AGG | + | chr1.4:67140948-67140967 | MS.gene005239:CDS | 40.0% | |
| ATAGTTTATCAGGCACGGAA+AGG | + | chr1.4:67139135-67139154 | MS.gene005239:intron | 40.0% | |
| ATATATAGCCGAAGCCACAT+TGG | - | chr1.4:67140916-67140935 | None:intergenic | 40.0% | |
| ATGATGTGGTCATTAGTGGA+TGG | + | chr1.4:67139585-67139604 | MS.gene005239:intron | 40.0% | |
| CAATGCCCTCTTGAACATAA+AGG | + | chr1.4:67139932-67139951 | MS.gene005239:intron | 40.0% | |
| CACAATGATGTGGTCATTAG+TGG | + | chr1.4:67139581-67139600 | MS.gene005239:intron | 40.0% | |
| CCAGGGTTTATTGTCATTGA+TGG | - | chr1.4:67139223-67139242 | None:intergenic | 40.0% | |
| CCATCAATGACAATAAACCC+TGG | + | chr1.4:67139220-67139239 | MS.gene005239:intron | 40.0% | |
| CTATCTGCAATGGTCTGTTA+TGG | + | chr1.4:67138490-67138509 | MS.gene005239:CDS | 40.0% | |
| CTTACAAGCAGCATATATGC+AGG | - | chr1.4:67139034-67139053 | None:intergenic | 40.0% | |
| GACCATTATCGTTAGCATTG+GGG | - | chr1.4:67138134-67138153 | None:intergenic | 40.0% | |
| GTAGAATTGCCTGTTTGAGA+GGG | + | chr1.4:67141050-67141069 | MS.gene005239:intron | 40.0% | |
| GTTAACGGTAGACAGTTCAT+GGG | - | chr1.4:67139426-67139445 | None:intergenic | 40.0% | |
| GTTGTGTTGTGTTTCATGTC+AGG | + | chr1.4:67138232-67138251 | MS.gene005239:intron | 40.0% | |
| TCTGTTTACATGGACCAATG+TGG | + | chr1.4:67140899-67140918 | MS.gene005239:intron | 40.0% | |
| TGCATACCTGGATCTTATGA+GGG | - | chr1.4:67138360-67138379 | None:intergenic | 40.0% | |
| TGCTTCAATTCCTTCTCTGA+AGG | - | chr1.4:67140961-67140980 | None:intergenic | 40.0% | |
| TGCTTCATTTGAGCTCTTTC+TGG | - | chr1.4:67141152-67141171 | None:intergenic | 40.0% | |
| TGTGACAACAAAATGACCTG+CGG | + | chr1.4:67140629-67140648 | MS.gene005239:intron | 40.0% | |
| TGTGTGCGTAGAATTCTGAT+GGG | - | chr1.4:67140741-67140760 | None:intergenic | 40.0% | |
| TGTTAACGGTAGACAGTTCA+TGG | - | chr1.4:67139427-67139446 | None:intergenic | 40.0% | |
| TTAGCTTCTCAGTAACTCAG+AGG | + | chr1.4:67138989-67139008 | MS.gene005239:intron | 40.0% | |
| TTGCATACCTGGATCTTATG+AGG | - | chr1.4:67138361-67138380 | None:intergenic | 40.0% | |
| TTGTATCTTCCTGATGCAGT+TGG | + | chr1.4:67140468-67140487 | MS.gene005239:intron | 40.0% | |
| TTGTGTGCGTAGAATTCTGA+TGG | - | chr1.4:67140742-67140761 | None:intergenic | 40.0% | |
| TTTGCAAAACACAGCAAGAC+TGG | + | chr1.4:67140323-67140342 | MS.gene005239:CDS | 40.0% | |
| ! | ATTATCGTTAGCATTGGGGT+GGG | - | chr1.4:67138130-67138149 | None:intergenic | 40.0% |
| ! | ATTTTGCAATTCTGGTGAGG+AGG | + | chr1.4:67139503-67139522 | MS.gene005239:CDS | 40.0% |
| ! | CGTTGGATGCAATTGATTCT+TGG | + | chr1.4:67140780-67140799 | MS.gene005239:CDS | 40.0% |
| ! | CTTTATGTTCAAGAGGGCAT+TGG | - | chr1.4:67139934-67139953 | None:intergenic | 40.0% |
| ! | GGAATTTTGCAATTCTGGTG+AGG | + | chr1.4:67139500-67139519 | MS.gene005239:intron | 40.0% |
| ! | TATTCTGAGAATACCTGTCC+AGG | - | chr1.4:67140393-67140412 | None:intergenic | 40.0% |
| ! | TTTTGCAAAGCCTATACAGC+AGG | - | chr1.4:67140312-67140331 | None:intergenic | 40.0% |
| !! | AGAAAATCATGTATCGGCTG+AGG | + | chr1.4:67139059-67139078 | MS.gene005239:CDS | 40.0% |
| !! | CTGAGAGATGGATTGGTTAT+TGG | + | chr1.4:67138681-67138700 | MS.gene005239:intron | 40.0% |
| !! | GGTTTGTTTGGCTCTCTTAT+TGG | - | chr1.4:67138043-67138062 | None:intergenic | 40.0% |
| !! | TGTCAGGTGAAAAGCATTCT+CGG | + | chr1.4:67138248-67138267 | MS.gene005239:intron | 40.0% |
| AAACAAACCCTAGACACCTG+TGG | + | chr1.4:67138054-67138073 | MS.gene005239:CDS | 45.0% | |
| AATCCAGACTCTGCATAACC+AGG | - | chr1.4:67139241-67139260 | None:intergenic | 45.0% | |
| AGCGCCCTTTATGTTCAAGA+GGG | - | chr1.4:67139940-67139959 | None:intergenic | 45.0% | |
| AGTACTCGTCATGAGAGCTA+TGG | - | chr1.4:67141014-67141033 | None:intergenic | 45.0% | |
| ATCCAGACTCTGCATAACCA+GGG | - | chr1.4:67139240-67139259 | None:intergenic | 45.0% | |
| ATGCAGGTCAACCTGTACAA+AGG | - | chr1.4:67139018-67139037 | None:intergenic | 45.0% | |
| ATTAGGTTCGTGGTCGTTGT+TGG | + | chr1.4:67138773-67138792 | MS.gene005239:intron | 45.0% | |
| CACCCCAATGCTAACGATAA+TGG | + | chr1.4:67138129-67138148 | MS.gene005239:CDS | 45.0% | |
| CACGAAAATCCCTCTCAAAC+AGG | - | chr1.4:67141062-67141081 | None:intergenic | 45.0% | |
| CATAAGAGGGAAGGGAATTG+AGG | - | chr1.4:67140209-67140228 | None:intergenic | 45.0% | |
| CCCAACAAGACTTCAGTTTC+CGG | - | chr1.4:67140990-67141009 | None:intergenic | 45.0% | |
| CGTAGAATTGCCTGTTTGAG+AGG | + | chr1.4:67141049-67141068 | MS.gene005239:intron | 45.0% | |
| CTCAGAGGAAACCTTTGTAC+AGG | + | chr1.4:67139004-67139023 | MS.gene005239:intron | 45.0% | |
| GACTGAGCTTCTTGAATCGT+TGG | + | chr1.4:67140763-67140782 | MS.gene005239:CDS | 45.0% | |
| GAGAGAAGATCCACTTCGAT+CGG | - | chr1.4:67137990-67138009 | None:intergenic | 45.0% | |
| GCTCAGCCTGATTATTATGC+AGG | - | chr1.4:67139562-67139581 | None:intergenic | 45.0% | |
| GCTTAACAGGGGAAAGAAGA+GGG | + | chr1.4:67141105-67141124 | MS.gene005239:intron | 45.0% | |
| GCTTGAAACGATCTCAATCC+TGG | - | chr1.4:67139703-67139722 | None:intergenic | 45.0% | |
| GGAGGAGCTTCAAAAACTCA+AGG | + | chr1.4:67139521-67139540 | MS.gene005239:CDS | 45.0% | |
| GTGACAACAAAATGACCTGC+GGG | + | chr1.4:67140630-67140649 | MS.gene005239:intron | 45.0% | |
| GTGTGCAGTTCTCAATGCAA+CGG | - | chr1.4:67139795-67139814 | None:intergenic | 45.0% | |
| TACATGGACCAATGTGGCTT+CGG | + | chr1.4:67140905-67140924 | MS.gene005239:intron | 45.0% | |
| TCACTTCCCTCATAAGATCC+AGG | + | chr1.4:67138351-67138370 | MS.gene005239:CDS | 45.0% | |
| TCAGTTGAGCGACATCTACT+AGG | - | chr1.4:67140821-67140840 | None:intergenic | 45.0% | |
| TCTATGGAGGTTCGTCTAGT+TGG | + | chr1.4:67139311-67139330 | MS.gene005239:intron | 45.0% | |
| TGACAACAAAATGACCTGCG+GGG | + | chr1.4:67140631-67140650 | MS.gene005239:intron | 45.0% | |
| TGCTTAACAGGGGAAAGAAG+AGG | + | chr1.4:67141104-67141123 | MS.gene005239:intron | 45.0% | |
| TGTACTGCTGAGAGATGGAT+TGG | + | chr1.4:67138674-67138693 | MS.gene005239:intron | 45.0% | |
| TGTCCAGGAGGAAATAAGAG+TGG | - | chr1.4:67140378-67140397 | None:intergenic | 45.0% | |
| TTCCATTAGAGTAGCTCCAC+AGG | - | chr1.4:67138073-67138092 | None:intergenic | 45.0% | |
| ! | ACAGGTGTCTAGGGTTTGTT+TGG | - | chr1.4:67138055-67138074 | None:intergenic | 45.0% |
| ! | ACATATCAAGTGAGAGGTGC+AGG | + | chr1.4:67140009-67140028 | MS.gene005239:intron | 45.0% |
| ! | ACCGGAAACTGAAGTCTTGT+TGG | + | chr1.4:67140986-67141005 | MS.gene005239:CDS | 45.0% |
| ! | ACTCTTATTTCCTCCTGGAC+AGG | + | chr1.4:67140377-67140396 | MS.gene005239:CDS | 45.0% |
| ! | CATTATCGTTAGCATTGGGG+TGG | - | chr1.4:67138131-67138150 | None:intergenic | 45.0% |
| ! | TTATCGTTAGCATTGGGGTG+GGG | - | chr1.4:67138129-67138148 | None:intergenic | 45.0% |
| !! | CCGGAAACTGAAGTCTTGTT+GGG | + | chr1.4:67140987-67141006 | MS.gene005239:CDS | 45.0% |
| !! | CGGAAACTGAAGTCTTGTTG+GGG | + | chr1.4:67140988-67141007 | MS.gene005239:CDS | 45.0% |
| !!! | GAAACTGTTTTCGGGTCTGA+GGG | - | chr1.4:67140582-67140601 | None:intergenic | 45.0% |
| !!! | TATTATTTTATTTATTTGTT+AGG | + | chr1.4:67138821-67138840 | MS.gene005239:intron | 5.0% |
| AACCCTGGTTATGCAGAGTC+TGG | + | chr1.4:67139235-67139254 | MS.gene005239:intron | 50.0% | |
| ACTAAAATCCAAACCCCCGC+AGG | - | chr1.4:67140648-67140667 | None:intergenic | 50.0% | |
| AGAAGATCCACTTCGATCGG+TGG | - | chr1.4:67137987-67138006 | None:intergenic | 50.0% | |
| AGTAGCTCCACAGGTGTCTA+GGG | - | chr1.4:67138064-67138083 | None:intergenic | 50.0% | |
| CACCTGTGGAGCTACTCTAA+TGG | + | chr1.4:67138068-67138087 | MS.gene005239:CDS | 50.0% | |
| CAGCGCCCTTTATGTTCAAG+AGG | - | chr1.4:67139941-67139960 | None:intergenic | 50.0% | |
| CCATCTCTCAGCAGTACATC+AGG | - | chr1.4:67138672-67138691 | None:intergenic | 50.0% | |
| CCTGATGTACTGCTGAGAGA+TGG | + | chr1.4:67138669-67138688 | MS.gene005239:intron | 50.0% | |
| GAAGATCCACTTCGATCGGT+GGG | - | chr1.4:67137986-67138005 | None:intergenic | 50.0% | |
| GACAACAAAATGACCTGCGG+GGG | + | chr1.4:67140632-67140651 | MS.gene005239:intron | 50.0% | |
| GCTCCATATCGCTCAGTTGA+AGG | + | chr1.4:67139278-67139297 | MS.gene005239:CDS | 50.0% | |
| GTGGCTTCGGCTATATATGC+AGG | + | chr1.4:67140918-67140937 | MS.gene005239:intron | 50.0% | |
| TCAGGCTGAGCACAATGATG+TGG | + | chr1.4:67139571-67139590 | MS.gene005239:intron | 50.0% | |
| TCTGAGAATACCTGTCCAGG+AGG | - | chr1.4:67140390-67140409 | None:intergenic | 50.0% | |
| ! | ATGTAGTTTGCGCGCATGTG+TGG | - | chr1.4:67139993-67140012 | None:intergenic | 50.0% |
| ! | GCACCACTCTTATTTCCTCC+TGG | + | chr1.4:67140372-67140391 | MS.gene005239:CDS | 50.0% |
| ! | TGTAGTTTGCGCGCATGTGT+GGG | - | chr1.4:67139992-67140011 | None:intergenic | 50.0% |
| !!! | GGAAACTGTTTTCGGGTCTG+AGG | - | chr1.4:67140583-67140602 | None:intergenic | 50.0% |
| ATCGGCTGAGGAGCTTGGTA+AGG | + | chr1.4:67139071-67139090 | MS.gene005239:CDS | 55.0% | |
| CAAAATGACCTGCGGGGGTT+TGG | + | chr1.4:67140637-67140656 | MS.gene005239:intron | 55.0% | |
| GAGTAGCTCCACAGGTGTCT+AGG | - | chr1.4:67138065-67138084 | None:intergenic | 55.0% | |
| GGTTCGTCTAGTTGGCTGTG+TGG | + | chr1.4:67139319-67139338 | MS.gene005239:intron | 55.0% | |
| TCGGCTGAGGAGCTTGGTAA+GGG | + | chr1.4:67139072-67139091 | MS.gene005239:CDS | 55.0% | |
| ! | CTTCCTGATGCAGTTGGCCT+TGG | + | chr1.4:67140474-67140493 | MS.gene005239:intron | 55.0% |
| ! | TTAGCATTGGGGTGGGGTTG+AGG | - | chr1.4:67138123-67138142 | None:intergenic | 55.0% |
| !! | CATGTATCGGCTGAGGAGCT+TGG | + | chr1.4:67139066-67139085 | MS.gene005239:CDS | 55.0% |
| CAGCCAAGGCCAACTGCATC+AGG | - | chr1.4:67140480-67140499 | None:intergenic | 60.0% | |
| CCACTTCGATCGGTGGGTAG+AGG | - | chr1.4:67137980-67137999 | None:intergenic | 60.0% | |
| CCTCTACCCACCGATCGAAG+TGG | + | chr1.4:67137977-67137996 | MS.gene005239:CDS | 60.0% | |
| CGGCTGAGGAGCTTGGTAAG+GGG | + | chr1.4:67139073-67139092 | MS.gene005239:CDS | 60.0% | |
| TGAGGTACGCAGAGCAGCCA+AGG | - | chr1.4:67140494-67140513 | None:intergenic | 60.0% | |
| GTGCGCGCACAGAGAGGTAG+AGG | - | chr1.4:67139970-67139989 | None:intergenic | 65.0% | |
| GTGTGGGTGCGCGCACAGAG+AGG | - | chr1.4:67139976-67139995 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 67137961 | 67141183 | 67137961 | ID=MS.gene005239 |
| chr1.4 | mRNA | 67137961 | 67141183 | 67137961 | ID=MS.gene005239.t1;Parent=MS.gene005239 |
| chr1.4 | exon | 67137961 | 67138150 | 67137961 | ID=MS.gene005239.t1.exon1;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67137961 | 67138150 | 67137961 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67138254 | 67138372 | 67138254 | ID=MS.gene005239.t1.exon2;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67138254 | 67138372 | 67138254 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67138461 | 67138534 | 67138461 | ID=MS.gene005239.t1.exon3;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67138461 | 67138534 | 67138461 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67139026 | 67139146 | 67139026 | ID=MS.gene005239.t1.exon4;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67139026 | 67139146 | 67139026 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67139251 | 67139319 | 67139251 | ID=MS.gene005239.t1.exon5;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67139251 | 67139319 | 67139251 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67139501 | 67139542 | 67139501 | ID=MS.gene005239.t1.exon6;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67139501 | 67139542 | 67139501 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67140321 | 67140398 | 67140321 | ID=MS.gene005239.t1.exon7;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67140321 | 67140398 | 67140321 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67140487 | 67140545 | 67140487 | ID=MS.gene005239.t1.exon8;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67140487 | 67140545 | 67140487 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67140718 | 67140802 | 67140718 | ID=MS.gene005239.t1.exon9;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67140718 | 67140802 | 67140718 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67140940 | 67141028 | 67140940 | ID=MS.gene005239.t1.exon10;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67140940 | 67141028 | 67140940 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| chr1.4 | exon | 67141114 | 67141183 | 67141114 | ID=MS.gene005239.t1.exon11;Parent=MS.gene005239.t1 |
| chr1.4 | CDS | 67141114 | 67141183 | 67141114 | ID=cds.MS.gene005239.t1;Parent=MS.gene005239.t1 |
| Gene Sequence |
| Protein sequence |
