AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006110.t1 MTR_1g097840 98.667 300 4 0 1 300 1 300 0.0 598
MS.gene006110.t1 MTR_1g097840 98.729 236 3 0 1 236 1 236 3.22e-168 467
MS.gene006110.t1 MTR_4g006730 59.220 282 112 1 9 287 7 288 6.17e-114 331
MS.gene006110.t1 MTR_2g104940 56.908 304 111 4 13 300 11 310 2.33e-108 317
MS.gene006110.t1 MTR_4g006630 67.273 220 64 2 87 300 1 218 7.52e-99 290
MS.gene006110.t1 MTR_4g006730 66.818 220 65 2 87 300 1 218 3.51e-98 288
MS.gene006110.t1 MTR_4g006730 57.576 231 95 1 9 236 7 237 8.38e-85 256
MS.gene006110.t1 MTR_8g087710 47.619 252 117 4 52 300 21 260 8.89e-70 218
MS.gene006110.t1 MTR_8g087720 49.785 233 106 3 71 300 35 259 1.39e-69 217
MS.gene006110.t1 MTR_2g017570 45.421 273 126 5 35 300 3 259 2.97e-67 211
MS.gene006110.t1 MTR_2g017610 47.600 250 112 4 54 300 26 259 4.84e-67 211
MS.gene006110.t1 MTR_2g017660 50.673 223 108 2 62 283 28 249 1.30e-66 209
MS.gene006110.t1 MTR_2g017590 48.718 234 109 3 70 300 32 257 1.09e-65 207
MS.gene006110.t1 MTR_7g010650 45.205 219 120 0 72 290 35 253 8.15e-65 205
MS.gene006110.t1 MTR_2g017620 48.696 230 113 2 74 300 38 265 1.37e-64 204
MS.gene006110.t1 MTR_2g017620 48.696 230 113 2 74 300 24 251 1.50e-64 204
MS.gene006110.t1 MTR_4g084880 44.492 236 118 4 70 300 31 258 7.02e-61 195
MS.gene006110.t1 MTR_5g063930 39.706 272 137 5 28 294 6 255 3.44e-58 187
MS.gene006110.t1 MTR_2g017620 49.468 188 86 2 118 300 1 184 8.86e-55 176
MS.gene006110.t1 MTR_4g006650 64.539 141 41 1 75 215 5 136 4.62e-53 176
MS.gene006110.t1 MTR_5g079570 43.056 216 121 2 69 283 35 249 1.23e-51 171
MS.gene006110.t1 MTR_1g070385 43.304 224 127 0 69 292 57 280 2.40e-51 181
MS.gene006110.t1 MTR_3g008920 41.004 239 135 4 47 283 1 235 6.40e-49 164
MS.gene006110.t1 MTR_8g087720 50.888 169 78 2 71 236 35 201 3.53e-46 154
MS.gene006110.t1 MTR_8g087720 48.322 149 72 2 71 216 35 181 1.46e-34 124
MS.gene006110.t1 MTR_7g010650 41.379 145 85 0 72 216 35 179 1.49e-33 122
MS.gene006110.t1 MTR_2g101370 39.189 222 114 7 69 275 15 230 5.34e-31 117
MS.gene006110.t1 MTR_1g006490 36.916 214 116 7 74 275 19 225 3.17e-28 109
MS.gene006110.t1 MTR_8g013680 37.089 213 113 7 78 275 23 229 1.10e-27 108
MS.gene006110.t1 MTR_1g006590 35.981 214 118 7 74 275 19 225 1.85e-27 107
MS.gene006110.t1 MTR_1g115405 33.333 228 132 7 78 291 25 246 1.22e-22 94.7
MS.gene006110.t1 MTR_5g012810 33.333 234 134 5 78 298 23 247 3.29e-21 90.5
MS.gene006110.t1 MTR_2g094270 30.677 251 148 7 71 297 37 285 4.08e-19 85.9
MS.gene006110.t1 MTR_4g063090 32.870 216 123 8 79 279 26 234 8.24e-19 84.3
MS.gene006110.t1 MTR_7g023350 31.140 228 137 7 78 291 25 246 1.93e-18 83.2
MS.gene006110.t1 MTR_6g069040 28.571 224 149 4 78 293 25 245 6.96e-18 81.6
MS.gene006110.t1 MTR_7g103030 31.250 224 143 6 78 292 25 246 3.05e-17 79.7
MS.gene006110.t1 MTR_1g077540 30.357 224 145 5 78 293 25 245 1.10e-16 78.6
MS.gene006110.t1 MTR_3g118010 29.060 234 148 7 66 282 29 261 4.45e-16 77.0
MS.gene006110.t1 MTR_2g094270 30.476 210 124 5 71 259 37 245 1.71e-15 75.1
MS.gene006110.t1 MTR_2g060360 33.149 181 101 5 127 299 77 245 5.66e-15 73.6
MS.gene006110.t1 MTR_4g415300 27.143 280 180 11 27 285 6 282 9.78e-14 70.5
MS.gene006110.t1 MTR_3g070210 26.577 222 146 6 78 282 59 280 1.58e-13 70.1
MS.gene006110.t1 MTR_8g098375 29.646 226 139 8 78 285 56 279 1.90e-13 69.7
MS.gene006110.t1 MTR_5g082070 24.727 275 189 6 28 285 9 282 2.21e-13 69.3
MS.gene006110.t1 MTR_7g101190 27.490 251 156 8 71 299 36 282 2.28e-13 69.3
MS.gene006110.t1 MTR_5g010150 28.319 226 142 8 78 285 56 279 1.00e-12 67.4
MS.gene006110.t1 MTR_4g059390 25.591 254 166 7 66 297 31 283 3.92e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006110.t1 AT4G10380 70.819 281 72 3 25 300 29 304 1.50e-142 404
MS.gene006110.t1 AT1G80760 58.000 300 117 4 9 300 7 305 7.71e-112 326
MS.gene006110.t1 AT4G19030 49.167 240 108 3 69 300 50 283 8.30e-69 216
MS.gene006110.t1 AT5G37820 43.173 271 138 4 35 300 11 270 1.35e-68 215
MS.gene006110.t1 AT5G37820 43.866 269 139 4 35 300 47 306 3.24e-68 215
MS.gene006110.t1 AT5G37810 42.066 271 141 4 35 300 11 270 2.30e-67 212
MS.gene006110.t1 AT4G18910 46.694 242 111 3 69 300 47 280 2.36e-65 207
MS.gene006110.t1 AT1G31885 50.224 223 103 2 69 283 38 260 1.29e-64 206
MS.gene006110.t1 AT1G31885 49.029 206 97 2 86 283 1 206 4.04e-57 185
MS.gene006110.t1 AT2G34390 43.777 233 117 4 69 291 43 271 2.80e-52 173
MS.gene006110.t1 AT2G34390 43.172 227 115 4 75 291 7 229 1.93e-50 167
MS.gene006110.t1 AT3G06100 44.762 210 113 3 78 285 50 258 2.35e-47 160
MS.gene006110.t1 AT3G06100 44.340 212 115 3 78 287 2 212 2.88e-47 158
MS.gene006110.t1 AT4G19030 49.143 175 81 2 69 235 50 224 3.13e-45 153
MS.gene006110.t1 AT4G18910 48.315 178 80 2 69 236 47 222 2.73e-44 150
MS.gene006110.t1 AT4G19030 46.795 156 75 2 69 216 50 205 1.79e-34 125
MS.gene006110.t1 AT2G34390 41.573 178 91 3 69 236 43 217 5.92e-32 118
MS.gene006110.t1 AT3G16240 38.028 213 111 8 78 275 23 229 8.43e-29 111
MS.gene006110.t1 AT2G29870 50.980 102 49 1 190 291 22 122 6.81e-26 100
MS.gene006110.t1 AT2G34390 40.625 160 82 3 69 218 43 199 2.02e-25 101
MS.gene006110.t1 AT5G47450 35.146 239 129 8 69 286 14 247 1.79e-24 99.8
MS.gene006110.t1 AT2G25810 36.842 209 113 7 79 275 24 225 5.21e-24 98.2
MS.gene006110.t1 AT4G17340 35.849 212 117 6 78 275 23 229 5.26e-24 98.2
MS.gene006110.t1 AT3G06100 39.855 138 82 1 149 285 40 177 1.85e-22 92.8
MS.gene006110.t1 AT2G36830 34.783 230 128 8 78 292 25 247 6.70e-22 92.8
MS.gene006110.t1 AT3G26520 33.186 226 133 7 78 290 26 246 1.34e-21 92.0
MS.gene006110.t1 AT4G01470 31.760 233 129 8 78 291 25 246 3.19e-19 85.5
MS.gene006110.t1 AT1G17810 29.258 229 148 5 78 293 28 255 1.90e-17 80.9
MS.gene006110.t1 AT1G31885 50.000 80 40 0 69 148 38 117 2.33e-17 77.4
MS.gene006110.t1 AT4G35100 29.600 250 156 7 66 299 30 275 8.62e-17 79.3
MS.gene006110.t1 AT4G35100 29.600 250 156 7 66 299 30 275 8.62e-17 79.3
MS.gene006110.t1 AT2G16850 29.796 245 152 7 71 299 33 273 9.99e-16 76.3
MS.gene006110.t1 AT1G73190 28.509 228 147 5 78 292 28 252 1.29e-15 75.5
MS.gene006110.t1 AT3G53420 27.037 270 170 8 52 297 17 283 8.16e-15 73.6
MS.gene006110.t1 AT3G53420 27.037 270 170 8 52 297 17 283 8.16e-15 73.6
MS.gene006110.t1 AT5G60660 27.311 238 146 8 72 285 37 271 4.31e-14 71.6
MS.gene006110.t1 AT2G37170 27.092 251 156 8 71 297 34 281 1.41e-13 70.1
MS.gene006110.t1 AT2G37170 26.908 249 159 7 71 297 77 324 2.65e-13 69.7
MS.gene006110.t1 AT3G54820 27.111 225 140 7 71 272 35 258 1.01e-12 67.8
MS.gene006110.t1 AT2G37180 26.104 249 161 7 71 297 34 281 2.65e-12 66.2
MS.gene006110.t1 AT2G45960 28.444 225 142 8 78 285 56 278 4.86e-12 65.5
MS.gene006110.t1 AT3G61430 28.000 225 143 8 78 285 56 278 7.52e-12 65.1
MS.gene006110.t1 AT3G61430 28.000 225 143 8 78 285 56 278 7.52e-12 65.1
MS.gene006110.t1 AT3G47440 27.876 226 140 6 78 287 27 245 1.37e-11 63.9
MS.gene006110.t1 AT1G01620 27.488 211 137 6 78 272 56 266 1.57e-11 64.3
MS.gene006110.t1 AT4G00430 27.232 224 146 7 78 285 57 279 2.69e-11 63.5
MS.gene006110.t1 AT4G23400 27.556 225 144 8 78 285 57 279 3.19e-11 63.2

Find 88 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCATCTCTGGATATATT+TGG 0.216287 1.4:+76237643 MS.gene006110:CDS
GGTGTCCCTGACTCCGATTC+TGG 0.274084 1.4:-76232987 None:intergenic
TTGTATTTGTTGTTCACTAT+TGG 0.275818 1.4:-76236586 None:intergenic
CAATGGAGTAGAAACTCTTA+TGG 0.319532 1.4:+76236606 MS.gene006110:CDS
CTTGGTGCTCTAGCTGGTTC+TGG 0.336743 1.4:+76237677 MS.gene006110:CDS
TTGCTCAACATTCTTATCTC+AGG 0.361959 1.4:+76237200 MS.gene006110:CDS
GAACATGTGCCCACGGGAAA+TGG 0.378646 1.4:-76236738 None:intergenic
ATGAATCCGGTGCGCACCTT+AGG 0.389490 1.4:+76237596 MS.gene006110:CDS
GTTTACCATCCTTTCCTCTC+TGG 0.391500 1.4:+76236820 MS.gene006110:CDS
ATGTTCATTATTCTCTCAAT+TGG 0.394479 1.4:+76236658 MS.gene006110:CDS
TGCAATGCAGGTTGGTGAAT+TGG 0.400837 1.4:+76237151 MS.gene006110:intron
ATCACTCACCATTGCCTTCG+CGG 0.410120 1.4:+76236708 MS.gene006110:CDS
TAAGGTGCGCACCGGATTCA+TGG 0.410875 1.4:-76237594 None:intergenic
CAGGAAATTACAAGCATCTC+TGG 0.418374 1.4:+76237633 MS.gene006110:CDS
TAATTTCCTGCTGCAACGGC+TGG 0.421426 1.4:-76237620 None:intergenic
CCGACGCTTGGTGCTCTAGC+TGG 0.422426 1.4:+76237671 MS.gene006110:CDS
AAAATGCCAGAATCGGAGTC+AGG 0.425265 1.4:+76232981 None:intergenic
AATGGCCCTCCGGGAGTATC+CGG 0.425506 1.4:-76233035 None:intergenic
TGCATCGCTAATTTCTCTGC+TGG 0.426344 1.4:+76233152 MS.gene006110:CDS
CTCTCAATTGGTCATATCTC+AGG 0.430898 1.4:+76236670 MS.gene006110:CDS
ATTCTTATAGATGAGAATAA+TGG 0.431504 1.4:-76233053 None:intergenic
CGGAGCTGAACCACCTCAAC+CGG 0.432157 1.4:+76237730 MS.gene006110:CDS
TGCTGCAACGGCTGGACCTA+AGG 0.434795 1.4:-76237612 None:intergenic
GTTATCAAGCTTCGTGATAA+CGG 0.441696 1.4:+76237710 MS.gene006110:CDS
CAACGTGAGTCATTTGCAAT+GGG 0.443310 1.4:+76233089 MS.gene006110:CDS
TTCATGGAACCACCGCTTGT+TGG 0.443747 1.4:-76237578 None:intergenic
ATGGGAAATGCAGCTTGTGC+TGG 0.464614 1.4:+76236625 MS.gene006110:CDS
AATGGAGTAGAAACTCTTAT+GGG 0.469616 1.4:+76236607 MS.gene006110:CDS
CTGAACCACCTCAACCGGTT+AGG 0.481691 1.4:+76237735 MS.gene006110:CDS
TAGCGACGGAAGCTCCTAAC+CGG 0.489899 1.4:-76237749 None:intergenic
CTTGTAATTTCCTGCTGCAA+CGG 0.491803 1.4:-76237624 None:intergenic
CGGCGTTTCGCCATTTCCCG+TGG 0.493217 1.4:+76236728 MS.gene006110:CDS
ACTTGTGCTGCAATGTAGGC+TGG 0.494118 1.4:-76236760 None:intergenic
GAGGTGCAACATGTGTATGC+CGG 0.494142 1.4:+76233112 MS.gene006110:CDS
ACAGATTGGAGCAGAGTTTG+TGG 0.494648 1.4:+76236528 MS.gene006110:intron
TATTTGGTGGCACCGACGCT+TGG 0.495981 1.4:+76237659 MS.gene006110:CDS
TTAGGTCCAGCCGTTGCAGC+AGG 0.497485 1.4:+76237614 MS.gene006110:CDS
CGGAAGCTCCTAACCGGTTG+AGG 0.497802 1.4:-76237743 None:intergenic
AAGCGGTGGTTCCATGAATC+CGG 0.497866 1.4:+76237583 MS.gene006110:CDS
AGGTGCAACATGTGTATGCC+GGG 0.499379 1.4:+76233113 MS.gene006110:CDS
TACCATCCTTTCCTCTCTGG+TGG 0.500750 1.4:+76236823 MS.gene006110:CDS
TGCTCAACATTCTTATCTCA+GGG 0.505305 1.4:+76237201 MS.gene006110:CDS
AGCGTCGGTGCCGGCGACAC+CGG 0.511138 1.4:+76233016 MS.gene006110:CDS
CAGATTGGAGCAGAGTTTGT+GGG 0.519331 1.4:+76236529 MS.gene006110:intron
GAATTGGCTGGTATTGCTGT+TGG 0.524769 1.4:+76237167 MS.gene006110:CDS
GATGAGAATAATGGCCCTCC+GGG 0.524874 1.4:-76233044 None:intergenic
AGATGAGAATAATGGCCCTC+CGG 0.525358 1.4:-76233045 None:intergenic
AAGTGTCTCTCTTTCTCAGA+AGG 0.536928 1.4:+76233187 MS.gene006110:CDS
CCGGGAGTATCCGGTGTCGC+CGG 0.538656 1.4:-76233026 None:intergenic
AGAGACTTGTGCTGCAATGT+AGG 0.541162 1.4:-76236764 None:intergenic
ACCGACGGCAGCGTCGGTGC+CGG 0.542854 1.4:+76233007 MS.gene006110:CDS
TCAACGTGAGTCATTTGCAA+TGG 0.548537 1.4:+76233088 MS.gene006110:CDS
TGCGCTTGTTATGCGCTCAA+AGG 0.549531 1.4:+76236796 MS.gene006110:CDS
GGCGTTTCGCCATTTCCCGT+GGG 0.558137 1.4:+76236729 MS.gene006110:CDS
GCGAAACGCCGCGAAGGCAA+TGG 0.561703 1.4:-76236716 None:intergenic
TTCTGAGAAAGAGAGACACT+TGG 0.567115 1.4:-76233185 None:intergenic
GCTTGTCCAACGCTAACAGT+AGG 0.567496 1.4:-76236856 None:intergenic
GCCGGCACCGACGCTGCCGT+CGG 0.571291 1.4:-76233008 None:intergenic
CTAATATATGCAGCAACAGC+AGG 0.571804 1.4:+76236562 MS.gene006110:CDS
AAATGCCAGAATCGGAGTCA+GGG 0.577507 1.4:+76232982 None:intergenic
GTTATCACGAAGCTTGATAA+CGG 0.579391 1.4:-76237708 None:intergenic
CCGGCGACACCGGATACTCC+CGG 0.580871 1.4:+76233026 MS.gene006110:CDS
CTTGTCCAACGCTAACAGTA+GGG 0.582924 1.4:-76236855 None:intergenic
GCGAAGGCAATGGTGAGTGA+TGG 0.584999 1.4:-76236706 None:intergenic
GCATCTCTGGATATATTTGG+TGG 0.589329 1.4:+76237646 MS.gene006110:CDS
GAAATGGCGAAACGCCGCGA+AGG 0.592464 1.4:-76236722 None:intergenic
ATGCAGGTTGGTGAATTGGC+TGG 0.597369 1.4:+76237155 MS.gene006110:intron
ATGAATTGAACGTACCGCAC+GGG 0.604011 1.4:-76236944 None:intergenic
GCTGGACCTAAGGTGCGCAC+CGG 0.614709 1.4:-76237602 None:intergenic
TAGGCTGGAACATGTGCCCA+CGG 0.616186 1.4:-76236745 None:intergenic
ACTGTCCCTACTGTTAGCGT+TGG 0.619097 1.4:+76236850 MS.gene006110:CDS
GTCGCAGCCAGCTCTAGCGA+CGG 0.626232 1.4:-76237763 None:intergenic
ATAGTGAACAACAAATACAA+TGG 0.626790 1.4:+76236589 MS.gene006110:CDS
CCAGCTAGAGCACCAAGCGT+CGG 0.629619 1.4:-76237671 None:intergenic
AGGCTGGAACATGTGCCCAC+GGG 0.634760 1.4:-76236744 None:intergenic
CACCACCAGAGAGGAAAGGA+TGG 0.636860 1.4:-76236825 None:intergenic
AGGGACACCGACGGCAGCGT+CGG 0.638264 1.4:+76233001 MS.gene006110:CDS
GTGAGTCATTTGCAATGGGG+AGG 0.644380 1.4:+76233093 MS.gene006110:CDS
GTGACACCACCAGAGAGGAA+AGG 0.645575 1.4:-76236829 None:intergenic
AAGCTCCTAACCGGTTGAGG+TGG 0.655759 1.4:-76237740 None:intergenic
AATGCTAGGCCAACAAGCGG+TGG 0.661522 1.4:+76237569 MS.gene006110:intron
ATCGGAGTCAGGGACACCGA+CGG 0.669278 1.4:+76232992 MS.gene006110:CDS
GTAAATGCTAGGCCAACAAG+CGG 0.699062 1.4:+76237566 MS.gene006110:intron
CGACACCGGATACTCCCGGA+GGG 0.703914 1.4:+76233030 MS.gene006110:CDS
AACGTGAGTCATTTGCAATG+GGG 0.719998 1.4:+76233090 MS.gene006110:CDS
GGACAGTGACACCACCAGAG+AGG 0.725765 1.4:-76236834 None:intergenic
GCGACACCGGATACTCCCGG+AGG 0.726349 1.4:+76233029 MS.gene006110:CDS
TGTTGCTACTGATTCCCGTG+CGG 0.778451 1.4:+76236930 MS.gene006110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAATTTAATTAACAATT+GGG + chr1.4:76233910-76233929 MS.gene006110:intron 10.0%
!! TAGTTAATTTAATTAACAAT+TGG + chr1.4:76233909-76233928 MS.gene006110:intron 10.0%
!! TTATATTGAAATGAAATATA+TGG + chr1.4:76234512-76234531 MS.gene006110:intron 10.0%
!!! AATGTATATTTTTTTTTTGA+AGG - chr1.4:76234202-76234221 None:intergenic 10.0%
!!! ATTTCAATATATAATTTTGT+CGG + chr1.4:76234564-76234583 MS.gene006110:intron 10.0%
!!! TAATAAAAAAATTGTTTTCA+AGG - chr1.4:76234289-76234308 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAAATA+CGG - chr1.4:76235369-76235388 None:intergenic 10.0%
!! AAAACTATTCAATATACTTT+CGG - chr1.4:76234851-76234870 None:intergenic 15.0%
!! AGAAAAAATATAGTTTCTAT+CGG - chr1.4:76233742-76233761 None:intergenic 15.0%
!! ATTCAGACAAAATTTATATT+CGG - chr1.4:76237402-76237421 None:intergenic 15.0%
!! CTTTATTAGATAAAAATGAT+CGG - chr1.4:76233512-76233531 None:intergenic 15.0%
!!! AAATAGATAGCATTTTTTTT+AGG + chr1.4:76233401-76233420 MS.gene006110:intron 15.0%
!!! AACTTATTGATTTATGAAAT+AGG - chr1.4:76233488-76233507 None:intergenic 15.0%
!!! AATAGATAGCATTTTTTTTA+GGG + chr1.4:76233402-76233421 MS.gene006110:intron 15.0%
!!! GAAATTACATAGATTTTTTT+TGG + chr1.4:76235946-76235965 MS.gene006110:intron 15.0%
!!! TAAGCAAAAATTGATTTTTT+AGG + chr1.4:76235000-76235019 MS.gene006110:intron 15.0%
!!! TATAAGTTGTTTGTTTTTTT+TGG - chr1.4:76236084-76236103 None:intergenic 15.0%
!!! TTAAAAAGTTGATTAAATGA+GGG + chr1.4:76235477-76235496 MS.gene006110:intron 15.0%
!!! TTTAAAAAGTTGATTAAATG+AGG + chr1.4:76235476-76235495 MS.gene006110:intron 15.0%
!! AAACTCAAAGTTTAAGTATT+CGG - chr1.4:76235528-76235547 None:intergenic 20.0%
!! ACAAAATTAAATCAACTACA+TGG - chr1.4:76236168-76236187 None:intergenic 20.0%
!! ATTCTTATAGATGAGAATAA+TGG - chr1.4:76233056-76233075 None:intergenic 20.0%
!! ATTGTTTAAACAACTAAAAG+TGG - chr1.4:76235840-76235859 None:intergenic 20.0%
!! GTACTAATAGTATATAACAT+TGG - chr1.4:76233848-76233867 None:intergenic 20.0%
!! TACATATACTATATTACACA+CGG - chr1.4:76234322-76234341 None:intergenic 20.0%
!! TTACAAATACAAAAAACAAG+TGG - chr1.4:76233941-76233960 None:intergenic 20.0%
!! TTTCATTGATAAACAAAAGA+TGG + chr1.4:76234632-76234651 MS.gene006110:intron 20.0%
!!! AAATGTATTTTGACATAGAT+GGG + chr1.4:76234592-76234611 MS.gene006110:intron 20.0%
!!! AAATTTCAAGTTCTCTAAAT+TGG + chr1.4:76237044-76237063 MS.gene006110:intron 20.0%
!!! AACATGTTTGATATTTTCTT+AGG - chr1.4:76235438-76235457 None:intergenic 20.0%
!!! AATTTCAAGTTCTCTAAATT+GGG + chr1.4:76237045-76237064 MS.gene006110:intron 20.0%
!!! ACATGTTTGATATTTTCTTA+GGG - chr1.4:76235437-76235456 None:intergenic 20.0%
!!! AGGAAATAAATTTTATTTGC+TGG - chr1.4:76234225-76234244 None:intergenic 20.0%
!!! ATTCAATGATAATGTTTCAA+AGG + chr1.4:76237312-76237331 MS.gene006110:intron 20.0%
!!! ATTGAGTTTTTTATGAGTTA+AGG + chr1.4:76237096-76237115 MS.gene006110:intron 20.0%
!!! ATTTAATTTTGTAAGCTTTG+GGG + chr1.4:76236176-76236195 MS.gene006110:intron 20.0%
!!! GATTTAATTTTGTAAGCTTT+GGG + chr1.4:76236175-76236194 MS.gene006110:intron 20.0%
!!! TAAAAAGTTGATTAAATGAG+GGG + chr1.4:76235478-76235497 MS.gene006110:intron 20.0%
!!! TACTTTTCCTTTTTCATTAA+GGG - chr1.4:76236473-76236492 None:intergenic 20.0%
!!! TAGGATTTATTTTTTTTGAG+AGG + chr1.4:76235617-76235636 MS.gene006110:intron 20.0%
!!! TCTATTTGATATTTTAGTCA+AGG - chr1.4:76233388-76233407 None:intergenic 20.0%
!!! TGATGTTATTGATTTGTATT+TGG + chr1.4:76237246-76237265 MS.gene006110:intron 20.0%
!!! TGATTTAATTTTGTAAGCTT+TGG + chr1.4:76236174-76236193 MS.gene006110:intron 20.0%
!!! TTACTTTTCCTTTTTCATTA+AGG - chr1.4:76236474-76236493 None:intergenic 20.0%
!!! TTGTATTTGGTTTTCATAAT+AGG + chr1.4:76237259-76237278 MS.gene006110:intron 20.0%
!!! TTTTTATTTCTCAAAAGTGT+CGG - chr1.4:76233699-76233718 None:intergenic 20.0%
!!! TTTTTCCAAAAATCTACATT+TGG + chr1.4:76236343-76236362 MS.gene006110:intron 20.0%
!!! TTTTTGTTTGCTTCTTTTTT+AGG - chr1.4:76234245-76234264 None:intergenic 20.0%
! AATGTTATAGGGAATTTCTA+CGG + chr1.4:76233432-76233451 MS.gene006110:intron 25.0%
! AGGGAATAGATAATGTTATA+GGG + chr1.4:76233421-76233440 MS.gene006110:intron 25.0%
! ATAGTGAACAACAAATACAA+TGG + chr1.4:76236589-76236608 MS.gene006110:CDS 25.0%
! ATCATGAAAAACTATTCCTA+AGG + chr1.4:76237340-76237359 MS.gene006110:intron 25.0%
! ATGTTCATTATTCTCTCAAT+TGG + chr1.4:76236658-76236677 MS.gene006110:CDS 25.0%
! CTATGTCAAAATACATTTGA+AGG - chr1.4:76234590-76234609 None:intergenic 25.0%
! CTCAAAAAAATTAAGTGTAC+CGG - chr1.4:76233809-76233828 None:intergenic 25.0%
! TAACATCAATTCATGAGAAA+AGG - chr1.4:76237234-76237253 None:intergenic 25.0%
! TAGGGAATAGATAATGTTAT+AGG + chr1.4:76233420-76233439 MS.gene006110:intron 25.0%
! TATAACATTGGCAATTTCTA+CGG - chr1.4:76233836-76233855 None:intergenic 25.0%
! TGTCAAATGTTATATTCAGT+TGG + chr1.4:76237288-76237307 MS.gene006110:intron 25.0%
!! AAACAGTCTCAAAGTATTTA+TGG - chr1.4:76236029-76236048 None:intergenic 25.0%
!! AACCAAATGGAATTAATTTG+TGG - chr1.4:76233293-76233312 None:intergenic 25.0%
!! AATTTTGTCTGAATAATGAC+AGG + chr1.4:76237408-76237427 MS.gene006110:intron 25.0%
!! ATCTCTCTCTTTATGATTTT+TGG + chr1.4:76233214-76233233 MS.gene006110:intron 25.0%
!! ATGTTCCAAATGTAGATTTT+TGG - chr1.4:76236351-76236370 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr1.4:76234990-76235009 None:intergenic 25.0%
!!! ACCAAATGGAATTAATTTGT+GGG - chr1.4:76233292-76233311 None:intergenic 25.0%
!!! ACTTTTCCTTTTTCATTAAG+GGG - chr1.4:76236472-76236491 None:intergenic 25.0%
!!! AGGAGGTATATATTTTACTA+AGG + chr1.4:76235174-76235193 MS.gene006110:intron 25.0%
!!! ATTTTTTTTGAGAGGAACTT+GGG + chr1.4:76235625-76235644 MS.gene006110:intron 25.0%
!!! CAAATGTATTTTGACATAGA+TGG + chr1.4:76234591-76234610 MS.gene006110:intron 25.0%
!!! GGAGGTATATATTTTACTAA+GGG + chr1.4:76235175-76235194 MS.gene006110:intron 25.0%
!!! GGTTCGACTTTTTTTTTTAA+GGG + chr1.4:76235646-76235665 MS.gene006110:intron 25.0%
!!! GTTAAGGTTGTTTTAATTCA+TGG + chr1.4:76237112-76237131 MS.gene006110:intron 25.0%
!!! TATTTTTGTATATGCAATGC+AGG + chr1.4:76237139-76237158 MS.gene006110:intron 25.0%
!!! TATTTTTTTTGAGAGGAACT+TGG + chr1.4:76235624-76235643 MS.gene006110:intron 25.0%
!!! TTGTATTTGTTGTTCACTAT+TGG - chr1.4:76236589-76236608 None:intergenic 25.0%
!!! TTTTTGGAAAAATCCACATT+TGG - chr1.4:76236335-76236354 None:intergenic 25.0%
!!! TTTTTTAAGGGAATGAACTT+GGG + chr1.4:76235658-76235677 MS.gene006110:intron 25.0%
!!! TTTTTTTAAGGGAATGAACT+TGG + chr1.4:76235657-76235676 MS.gene006110:intron 25.0%
!!! TTTTTTTTGAAGGAATTTGC+TGG - chr1.4:76234192-76234211 None:intergenic 25.0%
AACAAATGCAACTAGTAACA+TGG - chr1.4:76234787-76234806 None:intergenic 30.0%
AATGGAGTAGAAACTCTTAT+GGG + chr1.4:76236607-76236626 MS.gene006110:CDS 30.0%
ACAAATGCAACTAGTAACAT+GGG - chr1.4:76234786-76234805 None:intergenic 30.0%
ACTAGTAACATGGGTTTATT+AGG - chr1.4:76234777-76234796 None:intergenic 30.0%
ATATGACAGCCAAAATTTCA+GGG + chr1.4:76235128-76235147 MS.gene006110:intron 30.0%
ATCCTTAAATTAAGGTGTAC+TGG + chr1.4:76233458-76233477 MS.gene006110:intron 30.0%
CATTTAATACATGAGTGTAC+CGG + chr1.4:76233787-76233806 MS.gene006110:intron 30.0%
CTAGTAACATGGGTTTATTA+GGG - chr1.4:76234776-76234795 None:intergenic 30.0%
GGATTAGAATAATGTGACAA+TGG - chr1.4:76236450-76236469 None:intergenic 30.0%
GTCAGATTTAACTGTTTCAT+GGG + chr1.4:76233326-76233345 MS.gene006110:intron 30.0%
GTCATGTCATTAAAAACCTT+AGG - chr1.4:76237359-76237378 None:intergenic 30.0%
TAAATAGTATTGTTTGCACG+TGG + chr1.4:76234030-76234049 MS.gene006110:intron 30.0%
TAAGATTGTGAGTAATGTTG+TGG + chr1.4:76237541-76237560 MS.gene006110:intron 30.0%
TACCAGTACACCTTAATTTA+AGG - chr1.4:76233463-76233482 None:intergenic 30.0%
TACGGTACATCCTTAAATTA+AGG + chr1.4:76233450-76233469 MS.gene006110:intron 30.0%
TAGGTTAACAAGTGTCATAA+GGG + chr1.4:76235754-76235773 MS.gene006110:intron 30.0%
TATATGACAGCCAAAATTTC+AGG + chr1.4:76235127-76235146 MS.gene006110:intron 30.0%
TGTTAAAATGTGTCACAGAT+TGG + chr1.4:76236514-76236533 MS.gene006110:intron 30.0%
TTAGAGAACTTGAAATTTCG+CGG - chr1.4:76237042-76237061 None:intergenic 30.0%
TTAGGTTAACAAGTGTCATA+AGG + chr1.4:76235753-76235772 MS.gene006110:intron 30.0%
TTCAAAAGTTCTCCAAACAA+AGG + chr1.4:76236138-76236157 MS.gene006110:intron 30.0%
! ATATTTTCTTAGGGTGTGTT+TGG - chr1.4:76235428-76235447 None:intergenic 30.0%
! ATGTTTTCTCAATATCAAGG+AGG + chr1.4:76235157-76235176 MS.gene006110:intron 30.0%
! CTTTTGCTTATAATAGTGAC+CGG + chr1.4:76235098-76235117 MS.gene006110:intron 30.0%
! GACATGTTTTCTCAATATCA+AGG + chr1.4:76235154-76235173 MS.gene006110:intron 30.0%
!! AAATGGAATTAATTTGTGGG+CGG - chr1.4:76233289-76233308 None:intergenic 30.0%
!! CTTTTCCTTTTTCATTAAGG+GGG - chr1.4:76236471-76236490 None:intergenic 30.0%
!! TATATTTTACTAAGGGTGTG+TGG + chr1.4:76235182-76235201 MS.gene006110:intron 30.0%
!!! GGGTTCGACTTTTTTTTTTA+AGG + chr1.4:76235645-76235664 MS.gene006110:intron 30.0%
!!! TTTTGACATAGATGGGTTAT+TGG + chr1.4:76234599-76234618 MS.gene006110:intron 30.0%
AACATTCTTATCTCAGGGTA+TGG + chr1.4:76237206-76237225 MS.gene006110:intron 35.0%
AGCATTGCTTGAGTTATTAG+TGG + chr1.4:76236253-76236272 MS.gene006110:intron 35.0%
ATATTCGGAGACTAACTTGA+TGG - chr1.4:76237387-76237406 None:intergenic 35.0%
ATCGTGTCAATCTGAAAACT+TGG + chr1.4:76235592-76235611 MS.gene006110:intron 35.0%
ATGTTGTGGTTGTAAATGCT+AGG + chr1.4:76237555-76237574 MS.gene006110:intron 35.0%
CAAGCATCTCTGGATATATT+TGG + chr1.4:76237643-76237662 MS.gene006110:CDS 35.0%
CAATGGAGTAGAAACTCTTA+TGG + chr1.4:76236606-76236625 MS.gene006110:CDS 35.0%
CACATAGAATGTTCCAAATG+TGG + chr1.4:76236319-76236338 MS.gene006110:intron 35.0%
CTAATCCCCCTTAATGAAAA+AGG + chr1.4:76236463-76236482 MS.gene006110:intron 35.0%
CTACATGGTTAACCTTTGTT+TGG - chr1.4:76236153-76236172 None:intergenic 35.0%
GAAACAGTGCAAAAACATGT+AGG + chr1.4:76234681-76234700 MS.gene006110:intron 35.0%
GCCCACAAATTAATTCCATT+TGG + chr1.4:76233288-76233307 MS.gene006110:intron 35.0%
GGTCAGATTTAACTGTTTCA+TGG + chr1.4:76233325-76233344 MS.gene006110:intron 35.0%
GTAGAATGAAAGAGCTACTT+TGG - chr1.4:76236385-76236404 None:intergenic 35.0%
GTTATCAAGCTTCGTGATAA+CGG + chr1.4:76237710-76237729 MS.gene006110:CDS 35.0%
GTTATCACGAAGCTTGATAA+CGG - chr1.4:76237711-76237730 None:intergenic 35.0%
TAAACGTGAACGAGTTGTTA+AGG + chr1.4:76234875-76234894 MS.gene006110:intron 35.0%
TCAATCTGAAAACTTGGGTT+AGG + chr1.4:76235598-76235617 MS.gene006110:intron 35.0%
TCGTGTCAATCTGAAAACTT+GGG + chr1.4:76235593-76235612 MS.gene006110:intron 35.0%
TGCTCAACATTCTTATCTCA+GGG + chr1.4:76237201-76237220 MS.gene006110:CDS 35.0%
TGTAGGATATTAAGCTACAC+TGG + chr1.4:76234698-76234717 MS.gene006110:intron 35.0%
TGTGTTTGGATTGAGAGTTT+AGG - chr1.4:76235414-76235433 None:intergenic 35.0%
TTGCTCAACATTCTTATCTC+AGG + chr1.4:76237200-76237219 MS.gene006110:CDS 35.0%
TTTGGATTGAGAGTTTAGGA+GGG - chr1.4:76235410-76235429 None:intergenic 35.0%
TTTGTATATGCAATGCAGGT+TGG + chr1.4:76237143-76237162 MS.gene006110:intron 35.0%
! AAGTTGATTAAATGAGGGGT+AGG + chr1.4:76235482-76235501 MS.gene006110:intron 35.0%
! GAATGATGATGTGTGTACAT+AGG + chr1.4:76236202-76236221 MS.gene006110:intron 35.0%
! TTAAGCTACACTGGTTATCT+TGG + chr1.4:76234707-76234726 MS.gene006110:intron 35.0%
!! AGAGCTACTTTGGAGTTTAT+TGG - chr1.4:76236375-76236394 None:intergenic 35.0%
!! CAACTATTGCTTTTATCACC+CGG - chr1.4:76233134-76233153 None:intergenic 35.0%
!! TGTCATAAGGGCATTGTTTA+AGG + chr1.4:76235766-76235785 MS.gene006110:intron 35.0%
!!! GATTTTTGGTCAACGAGTTT+TGG + chr1.4:76233228-76233247 MS.gene006110:intron 35.0%
AACGTGAGTCATTTGCAATG+GGG + chr1.4:76233090-76233109 MS.gene006110:CDS 40.0%
AAGTGTCTCTCTTTCTCAGA+AGG + chr1.4:76233187-76233206 MS.gene006110:CDS 40.0%
AATGAATTGAACGTACCGCA+CGG - chr1.4:76236948-76236967 None:intergenic 40.0%
AGTTTAGGAGGGAAAAGGAA+GGG - chr1.4:76235399-76235418 None:intergenic 40.0%
ATGGAGAGTTTAAGAGAGGA+TGG + chr1.4:76235205-76235224 MS.gene006110:intron 40.0%
CAACGTGAGTCATTTGCAAT+GGG + chr1.4:76233089-76233108 MS.gene006110:CDS 40.0%
CAGGAAATTACAAGCATCTC+TGG + chr1.4:76237633-76237652 MS.gene006110:CDS 40.0%
CATGCAAGCTAGAAACCAAA+TGG - chr1.4:76233306-76233325 None:intergenic 40.0%
CTAATATATGCAGCAACAGC+AGG + chr1.4:76236562-76236581 MS.gene006110:CDS 40.0%
CTCTCAATTGGTCATATCTC+AGG + chr1.4:76236670-76236689 MS.gene006110:CDS 40.0%
CTTGTAATTTCCTGCTGCAA+CGG - chr1.4:76237627-76237646 None:intergenic 40.0%
GCATCTCTGGATATATTTGG+TGG + chr1.4:76237646-76237665 MS.gene006110:CDS 40.0%
GTCTGAATAATGACAGGATC+AGG + chr1.4:76237414-76237433 MS.gene006110:intron 40.0%
GTGATGAGATGTGCATGATT+GGG + chr1.4:76233988-76234007 MS.gene006110:intron 40.0%
GTTTGGATTGAGAGTTTAGG+AGG - chr1.4:76235411-76235430 None:intergenic 40.0%
TCAACGTGAGTCATTTGCAA+TGG + chr1.4:76233088-76233107 MS.gene006110:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr1.4:76235121-76235102 None:intergenic 40.0%
TGGAGAGTTTAAGAGAGGAT+GGG + chr1.4:76235206-76235225 MS.gene006110:intron 40.0%
TGTGATGAGATGTGCATGAT+TGG + chr1.4:76233987-76234006 MS.gene006110:intron 40.0%
TTGAGAGTTTAGGAGGGAAA+AGG - chr1.4:76235404-76235423 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr1.4:76235101-76235120 MS.gene006110:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr1.4:76235120-76235101 None:intergenic 40.0%
! GGGAGTACGAGTTAAGTAAA+TGG - chr1.4:76234966-76234985 None:intergenic 40.0%
! TTCTGAGAAAGAGAGACACT+TGG - chr1.4:76233188-76233207 None:intergenic 40.0%
!! CATTTGGTTTCTAGCTTGCA+TGG + chr1.4:76233304-76233323 MS.gene006110:intron 40.0%
!! TTTCGCGGCAACTTTTTAAG+TGG - chr1.4:76237027-76237046 None:intergenic 40.0%
!! TTTTACTAAGGGTGTGTGGA+TGG + chr1.4:76235186-76235205 MS.gene006110:intron 40.0%
ACAGATTGGAGCAGAGTTTG+TGG + chr1.4:76236528-76236547 MS.gene006110:intron 45.0%
AGAGACTTGTGCTGCAATGT+AGG - chr1.4:76236767-76236786 None:intergenic 45.0%
AGAGTTTAAGAGAGGATGGG+AGG + chr1.4:76235209-76235228 MS.gene006110:intron 45.0%
AGATGAGAATAATGGCCCTC+CGG - chr1.4:76233048-76233067 None:intergenic 45.0%
AGTTTAAGAGAGGATGGGAG+GGG + chr1.4:76235211-76235230 MS.gene006110:intron 45.0%
ATGAATTGAACGTACCGCAC+GGG - chr1.4:76236947-76236966 None:intergenic 45.0%
CAGATTGGAGCAGAGTTTGT+GGG + chr1.4:76236529-76236548 MS.gene006110:intron 45.0%
CTTGTCCAACGCTAACAGTA+GGG - chr1.4:76236858-76236877 None:intergenic 45.0%
GAATTGGCTGGTATTGCTGT+TGG + chr1.4:76237167-76237186 MS.gene006110:CDS 45.0%
GACAGCCAAAATTTCAGGGA+CGG + chr1.4:76235132-76235151 MS.gene006110:intron 45.0%
GAGTTTAAGAGAGGATGGGA+GGG + chr1.4:76235210-76235229 MS.gene006110:intron 45.0%
GAGTTTAGGAGGGAAAAGGA+AGG - chr1.4:76235400-76235419 None:intergenic 45.0%
GTAAATGCTAGGCCAACAAG+CGG + chr1.4:76237566-76237585 MS.gene006110:intron 45.0%
GTGGATGGAGAGTTTAAGAG+AGG + chr1.4:76235201-76235220 MS.gene006110:intron 45.0%
GTTTACCATCCTTTCCTCTC+TGG + chr1.4:76236820-76236839 MS.gene006110:CDS 45.0%
GTTTAGGAGGGAAAAGGAAG+GGG - chr1.4:76235398-76235417 None:intergenic 45.0%
TACTTAACTCGTACTCCCTC+CGG + chr1.4:76234968-76234987 MS.gene006110:intron 45.0%
TGCATCGCTAATTTCTCTGC+TGG + chr1.4:76233152-76233171 MS.gene006110:CDS 45.0%
TGGCTGTCATATACTTCCTC+CGG - chr1.4:76235120-76235139 None:intergenic 45.0%
! CATGTCCGTCCCTGAAATTT+TGG - chr1.4:76235140-76235159 None:intergenic 45.0%
!! TGCAATGCAGGTTGGTGAAT+TGG + chr1.4:76237151-76237170 MS.gene006110:intron 45.0%
!! TGGAATTAATTTGTGGGCGG+TGG - chr1.4:76233286-76233305 None:intergenic 45.0%
!! AAAATTAAAAAAAAAAAGTT+AGG + chr1.4:76235735-76235754 MS.gene006110:intron 5.0%
!!! TTTATTTTACATTTATTTTT+AGG - chr1.4:76235888-76235907 None:intergenic 5.0%
AAGCGGTGGTTCCATGAATC+CGG + chr1.4:76237583-76237602 MS.gene006110:CDS 50.0%
ACTGTCCCTACTGTTAGCGT+TGG + chr1.4:76236850-76236869 MS.gene006110:CDS 50.0%
ACTTGTGCTGCAATGTAGGC+TGG - chr1.4:76236763-76236782 None:intergenic 50.0%
AGGTGCAACATGTGTATGCC+GGG + chr1.4:76233113-76233132 MS.gene006110:CDS 50.0%
ATCACTCACCATTGCCTTCG+CGG + chr1.4:76236708-76236727 MS.gene006110:CDS 50.0%
ATGGGAAATGCAGCTTGTGC+TGG + chr1.4:76236625-76236644 MS.gene006110:CDS 50.0%
GAGGTGCAACATGTGTATGC+CGG + chr1.4:76233112-76233131 MS.gene006110:CDS 50.0%
GATGAGAATAATGGCCCTCC+GGG - chr1.4:76233047-76233066 None:intergenic 50.0%
GCTTGTCCAACGCTAACAGT+AGG - chr1.4:76236859-76236878 None:intergenic 50.0%
GTGAGTCATTTGCAATGGGG+AGG + chr1.4:76233093-76233112 MS.gene006110:CDS 50.0%
TAATTTCCTGCTGCAACGGC+TGG - chr1.4:76237623-76237642 None:intergenic 50.0%
TACCATCCTTTCCTCTCTGG+TGG + chr1.4:76236823-76236842 MS.gene006110:CDS 50.0%
TTCATGGAACCACCGCTTGT+TGG - chr1.4:76237581-76237600 None:intergenic 50.0%
!! ATGCAGGTTGGTGAATTGGC+TGG + chr1.4:76237155-76237174 MS.gene006110:intron 50.0%
!! TGCGCTTGTTATGCGCTCAA+AGG + chr1.4:76236796-76236815 MS.gene006110:CDS 50.0%
!! TGTTGCTACTGATTCCCGTG+CGG + chr1.4:76236930-76236949 MS.gene006110:CDS 50.0%
AAGCTCCTAACCGGTTGAGG+TGG - chr1.4:76237743-76237762 None:intergenic 55.0%
AATGCTAGGCCAACAAGCGG+TGG + chr1.4:76237569-76237588 MS.gene006110:intron 55.0%
ATGAATCCGGTGCGCACCTT+AGG + chr1.4:76237596-76237615 MS.gene006110:CDS 55.0%
CACCACCAGAGAGGAAAGGA+TGG - chr1.4:76236828-76236847 None:intergenic 55.0%
CTGAACCACCTCAACCGGTT+AGG + chr1.4:76237735-76237754 MS.gene006110:CDS 55.0%
GAACATGTGCCCACGGGAAA+TGG - chr1.4:76236741-76236760 None:intergenic 55.0%
GCGAAGGCAATGGTGAGTGA+TGG - chr1.4:76236709-76236728 None:intergenic 55.0%
GTGACACCACCAGAGAGGAA+AGG - chr1.4:76236832-76236851 None:intergenic 55.0%
TAAGGTGCGCACCGGATTCA+TGG - chr1.4:76237597-76237616 None:intergenic 55.0%
TAGCGACGGAAGCTCCTAAC+CGG - chr1.4:76237752-76237771 None:intergenic 55.0%
TAGGCTGGAACATGTGCCCA+CGG - chr1.4:76236748-76236767 None:intergenic 55.0%
!! CTTGGTGCTCTAGCTGGTTC+TGG + chr1.4:76237677-76237696 MS.gene006110:CDS 55.0%
!! TATTTGGTGGCACCGACGCT+TGG + chr1.4:76237659-76237678 MS.gene006110:CDS 55.0%
AGGCTGGAACATGTGCCCAC+GGG - chr1.4:76236747-76236766 None:intergenic 60.0%
ATCGGAGTCAGGGACACCGA+CGG + chr1.4:76232992-76233011 MS.gene006110:CDS 60.0%
CGGAAGCTCCTAACCGGTTG+AGG - chr1.4:76237746-76237765 None:intergenic 60.0%
CGGAGCTGAACCACCTCAAC+CGG + chr1.4:76237730-76237749 MS.gene006110:CDS 60.0%
GAAATGGCGAAACGCCGCGA+AGG - chr1.4:76236725-76236744 None:intergenic 60.0%
GGACAGTGACACCACCAGAG+AGG - chr1.4:76236837-76236856 None:intergenic 60.0%
GGCGTTTCGCCATTTCCCGT+GGG + chr1.4:76236729-76236748 MS.gene006110:CDS 60.0%
GGTGTCCCTGACTCCGATTC+TGG - chr1.4:76232990-76233009 None:intergenic 60.0%
TGCTGCAACGGCTGGACCTA+AGG - chr1.4:76237615-76237634 None:intergenic 60.0%
TTAGGTCCAGCCGTTGCAGC+AGG + chr1.4:76237614-76237633 MS.gene006110:CDS 60.0%
! CCAGCTAGAGCACCAAGCGT+CGG - chr1.4:76237674-76237693 None:intergenic 60.0%
!! AATGGCCCTCCGGGAGTATC+CGG - chr1.4:76233038-76233057 None:intergenic 60.0%
CGACACCGGATACTCCCGGA+GGG + chr1.4:76233030-76233049 MS.gene006110:CDS 65.0%
CGGCGTTTCGCCATTTCCCG+TGG + chr1.4:76236728-76236747 MS.gene006110:CDS 65.0%
GCGAAACGCCGCGAAGGCAA+TGG - chr1.4:76236719-76236738 None:intergenic 65.0%
GCTGGACCTAAGGTGCGCAC+CGG - chr1.4:76237605-76237624 None:intergenic 65.0%
!! CCGACGCTTGGTGCTCTAGC+TGG + chr1.4:76237671-76237690 MS.gene006110:CDS 65.0%
AGGGACACCGACGGCAGCGT+CGG + chr1.4:76233001-76233020 MS.gene006110:CDS 70.0%
CCGGCGACACCGGATACTCC+CGG + chr1.4:76233026-76233045 MS.gene006110:CDS 70.0%
GCGACACCGGATACTCCCGG+AGG + chr1.4:76233029-76233048 MS.gene006110:CDS 70.0%
!! CCGGGAGTATCCGGTGTCGC+CGG - chr1.4:76233029-76233048 None:intergenic 70.0%
!! ACCGACGGCAGCGTCGGTGC+CGG + chr1.4:76233007-76233026 MS.gene006110:CDS 75.0%
!! AGCGTCGGTGCCGGCGACAC+CGG + chr1.4:76233016-76233035 MS.gene006110:CDS 75.0%
!!! GCCGGCACCGACGCTGCCGT+CGG - chr1.4:76233011-76233030 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 76232984 76237772 76232984 ID=MS.gene006110
chr1.4 mRNA 76232984 76237772 76232984 ID=MS.gene006110.t1;Parent=MS.gene006110
chr1.4 exon 76232984 76233208 76232984 ID=MS.gene006110.t1.exon1;Parent=MS.gene006110.t1
chr1.4 CDS 76232984 76233208 76232984 ID=cds.MS.gene006110.t1;Parent=MS.gene006110.t1
chr1.4 exon 76236532 76236951 76236532 ID=MS.gene006110.t1.exon2;Parent=MS.gene006110.t1
chr1.4 CDS 76236532 76236951 76236532 ID=cds.MS.gene006110.t1;Parent=MS.gene006110.t1
chr1.4 exon 76237161 76237222 76237161 ID=MS.gene006110.t1.exon3;Parent=MS.gene006110.t1
chr1.4 CDS 76237161 76237222 76237161 ID=cds.MS.gene006110.t1;Parent=MS.gene006110.t1
chr1.4 exon 76237577 76237772 76237577 ID=MS.gene006110.t1.exon4;Parent=MS.gene006110.t1
chr1.4 CDS 76237577 76237772 76237577 ID=cds.MS.gene006110.t1;Parent=MS.gene006110.t1
Gene Sequence

>MS.gene006110

ATGCCAGAATCGGAGTCAGGGACACCGACGGCAGCGTCGGTGCCGGCGACACCGGATACTCCCGGAGGGCCATTATTCTCATCTATAAGAATTGATTCACTTGATCAACGTGAGTCATTTGCAATGGGGAGGTGCAACATGTGTATGCCGGGTGATAAAAGCAATAGTTGCATCGCTAATTTCTCTGCTGGAGTTCGTATTCCAAGTGTCTCTCTTTCTCAGAAGGTAACATCTCTCTCTTTATGATTTTTGGTCAACGAGTTTTGGTGAATTATTTTTATGAATATTTTTTTCTCATACCACCGCCCACAAATTAATTCCATTTGGTTTCTAGCTTGCATGGTCAGATTTAACTGTTTCATGGGAGTTATTTATTATTTAGAAGACAAAATAACAGTAAACCTTGACTAAAATATCAAATAGATAGCATTTTTTTTAGGGAATAGATAATGTTATAGGGAATTTCTACGGTACATCCTTAAATTAAGGTGTACTGGTACACCTATTTCATAAATCAATAAGTTACCGATCATTTTTATCTAATAAAGAGATATTTGTCGACTTTTATATTTTAGAAAATATTATTTCATAAGAAAAAACATCATTTCATTTTTTATAAGTATCATACTAATTTTTTAACATTTTATCGAAAAAATAATCAATATTCACTATTATTAGTATTAAAAATTAAAAAAAGTTGAATTTTGATTCGCCGACACTTTTGAGAAATAAAAATATAATTATTATAATTGTAACCGATAGAAACTATATTTTTTCTAAAAAAAATAACTCATTAAACTATTCATTTAATACATGAGTGTACCGGTACACTTAATTTTTTTGAGTGTACCGTAGAAATTGCCAATGTTATATACTATTAGTACTATATGTATGTGACATAAATGTATTAGATATTAATTAATATTAGTTAATTTAATTAACAATTGGGCATTACCACTTGTTTTTTGTATTTGTAATGTTTTTCACAATTTGTATCTTATGATGTGATGAGATGTGCATGATTGGGATATTAGCAAAATAATGCATAAATAGTATTGTTTGCACGTGGTATACGATATTCTTTGAAGTCTTCAATATTCTTATGTATACTCTTCGCTGTCATTTTTATAAGAAATACTAAGTATTATCTTTCTTTTAATTATAAAATATATAAACTTGTTATAAAGTCTATTTATATATACATTCCAGCAAATTCCTTCAAAAAAAAAATATACATTCCAGCAAATAAAATTTATTTCCTAAAAAAGAAGCAAACAAAAATATCATTTTCTATTGAAAAAGCCTTGAAAACAATTTTTTTATTAAATACAAACACCGTGTGTAATATAGTATATGTACATTCTTATCTTTCTCTTACTTTTTATGTTCTACAAACACATATTTCAAAACTATGCATAAAAACTAAAGAACATAAAAAAAATAAAGAATGATTTCACATAATTCTATTTATATAATTGTATTAGTTAGTACTATTGTTGAAATGCATAAGAGTACATTATTATCTTTTTTATATTGAAATGAAATATATGGTTGCGAGCAGTTATCTTCAGTATTCACACATTTCAATATATAATTTTGTCGGCCTTCAAATGTATTTTGACATAGATGGGTTATTGGATAAAAACAATTTCATTGATAAACAAAAGATGGATTACGACTTCTGAGTACATAGACTTGAAACAGTGCAAAAACATGTAGGATATTAAGCTACACTGGTTATCTTGGCTTGATTGTAAAAAACGTACTATACATCTGTCGCTAGCAAGAGCCCTAATAAACCCATGTTACTAGTTGCATTTGTTGAAAGAAACTTTTCTAAAGTAAACTTGTGAAAATCTTATTTCCGAAAGTATATTGAATAGTTTTACTTTAAACGTGAACGAGTTGTTAAGGATTTTGCAAGAAATATATTATTCAAATGAGATTTCTCTTTGTAAAATAAAAAAGATTAATGCTGACCATTTACTTAACTCGTACTCCCTCCGGTCACTATTATAAGCAAAAATTGATTTTTTAGGTTCATTCAATAAATGATGTATGTAGTCTATATATAGACTACATACATCATTTATTGAATGAATCTAAAAAATGAACTTTTGCTTATAATAGTGACCGGAGGAAGTATATGACAGCCAAAATTTCAGGGACGGACATGTTTTCTCAATATCAAGGAGGTATATATTTTACTAAGGGTGTGTGGATGGAGAGTTTAAGAGAGGATGGGAGGGGAGAGTTTACATTTTGTTTTTAAATTACGAACACTATAAAATATTTTTTTTAAAATTAAAATAACAACATGATAAACGATCATATAATACTTCAATCACACTTAATTTATTATAGAAAAACATGTTATATAGTCCGTATTTTAAAAAAGAAAAGTAAATCATCCCCTTCCTTTTCCCTCCTAAACTCTCAATCCAAACACACCCTAAGAAAATATCAAACATGTTCGATGTTTTTTTTTTTTTTTTAAAAAGTTGATTAAATGAGGGGTAGGATGAGTGTAAAAGAATTGAGCCGAATACTTAAACTTTGAGTTTGACTTGTAAAAAAATGAATAATCTGAGCTTGACTCATTTATTTAATCGTGTCAATCTGAAAACTTGGGTTAGGATTTATTTTTTTTGAGAGGAACTTGGGTTCGACTTTTTTTTTTAAGGGAATGAACTTGGGTTTGACTTGTTTTTGCAATTATGCACATTTTGACTATGATAAAAAATAAAATTAAAAATTAAAAAAAAAAAGTTAGGTTAACAAGTGTCATAAGGGCATTGTTTAAGGAATTCATTATAAAAAGTTATAATTACACAAGTTGTTATATAAAAGTTACCACTTTTAGTTGTTTAAACAATGCTCTAAAAACATTTGTTAGCATTTCCTAAAAATAAATGTAAAATAAAAAGTTAAAAGACATTCATTCTTTTGCTACTAATATTTTGAAATTACATAGATTTTTTTTGGACTATATATATATATATATATATATGTTTGACTTGATTTATTAAAGTTTCTTAACTGCCATAAATACTTTGAGACTGTTTGAAAAAATTTATACAACAAAATATGACTTTGACCAAAAAAAACAAACAACTTATAACATATCTATGACGTATTTTCAACTTTTTTTTTTTTCAAAAGTTCTCCAAACAAAGGTTAACCATGTAGTTGATTTAATTTTGTAAGCTTTGGGGTTAGAATGATGATGTGTGTACATAGGTTTATTGATGTGCTACTTTTCTACTTATAGCATTGCTTGAGTTATTAGTGGTGATTACTAAAAAAAAAATAAAGAAAAAATGTATTTTTGAATACACATAGAATGTTCCAAATGTGGATTTTTCCAAAAATCTACATTTGGAACATTCCAATAAACTCCAAAGTAGCTCTTTCATTCTACTATATAAGCATCGAATTTTCAAAAACTCTTCTAAAATATTATCCATTGTCACATTATTCTAATCCCCCTTAATGAAAAAGGAAAAGTAAAATTAATATTGATTTTTCAATGTTAAAATGTGTCACAGATTGGAGCAGAGTTTGTGGGAACATTCATACTAATATATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACAATGGAGTAGAAACTCTTATGGGAAATGCAGCTTGTGCTGGACTAACAGTCATGTTCATTATTCTCTCAATTGGTCATATCTCAGGTGCACATCTCAATCCATCACTCACCATTGCCTTCGCGGCGTTTCGCCATTTCCCGTGGGCACATGTTCCAGCCTACATTGCAGCACAAGTCTCTGCTTCGATTTGCGCTTGTTATGCGCTCAAAGGAGTTTACCATCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTAGCGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTTACTGCTGTTGCTACTGATTCCCGTGCGGTACGTTCAATTCATTCATTCGTTTGTGTTATCTTTTTTAACTTCATTGATCATCTTTTTTAACTGCGTTGACCACTTAAAAAGTTGCCGCGAAATTTCAAGTTCTCTAAATTGGGTTGAACAAAAAATAATTTATCTTGAATTATTGAGTTTTTTATGAGTTAAGGTTGTTTTAATTCATGGATTTTATTTTTGTATATGCAATGCAGGTTGGTGAATTGGCTGGTATTGCTGTTGGTGCTACAGTTTTGCTCAACATTCTTATCTCAGGGTATGGAACCTTTTCTCATGAATTGATGTTATTGATTTGTATTTGGTTTTCATAATAGGTGTATATGTCAAATGTTATATTCAGTTGGAATTCAATGATAATGTTTCAAAGGAATTAATCATGAAAAACTATTCCTAAGGTTTTTAATGACATGACTGTGTCCATCAAGTTAGTCTCCGAATATAAATTTTGTCTGAATAATGACAGGATCAGGAACTTAATTTAATCATTTATGAATTAATATGACTGATGCATTTTATTTTTTCGTAGACTAATTTGATTCTATTGTTTACATGATTTGATTTGAGTTCTTTATTCTAAGATTGTGAGTAATGTTGTGGTTGTAAATGCTAGGCCAACAAGCGGTGGTTCCATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATCTCTGGATATATTTGGTGGCACCGACGCTTGGTGCTCTAGCTGGTTCTGGAGTTTATACCGTTATCAAGCTTCGTGATAACGGAGCTGAACCACCTCAACCGGTTAGGAGCTTCCGTCGCTAG
Protein sequence

>MS.gene006110.t1

MPESESGTPTAASVPATPDTPGGPLFSSIRIDSLDQRESFAMGRCNMCMPGDKSNSCIANFSAGVRIPSVSLSQKIGAEFVGTFILIYAATAGPIVNNKYNGVETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKGVYHPFLSGGVTVPTVSVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHLWIYLVAPTLGALAGSGVYTVIKLRDNGAEPPQPVRSFRR