Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009458.t1 | XP_013458822.1 | 97.4 | 349 | 8 | 1 | 1 | 349 | 1 | 348 | 7.80E-89 | 337.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009458.t1 | Q9SAR5 | 49.0 | 257 | 112 | 7 | 1 | 251 | 1 | 244 | 9.1e-38 | 159.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009458.t1 | A0A072USU9 | 97.4 | 349 | 8 | 1 | 1 | 349 | 1 | 348 | 5.6e-89 | 337.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009458.t1 | MTR_3g009280 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| MS.gene009458.t1 | MTR_3g113040 | 57.676 | 241 | 93 | 5 | 1 | 239 | 1 | 234 | 5.93e-85 | 262 |
| MS.gene009458.t1 | MTR_1g054540 | 53.571 | 196 | 59 | 5 | 30 | 225 | 34 | 197 | 1.15e-51 | 176 |
| MS.gene009458.t1 | MTR_1g054620 | 56.818 | 176 | 58 | 4 | 50 | 225 | 18 | 175 | 3.91e-51 | 174 |
| MS.gene009458.t1 | MTR_1g054620 | 56.818 | 176 | 58 | 4 | 50 | 225 | 18 | 175 | 4.73e-51 | 174 |
| MS.gene009458.t1 | MTR_6g034405 | 44.715 | 246 | 104 | 7 | 1 | 242 | 1 | 218 | 9.16e-51 | 174 |
| MS.gene009458.t1 | MTR_3g114110 | 48.259 | 201 | 76 | 5 | 42 | 242 | 39 | 211 | 8.55e-50 | 171 |
| MS.gene009458.t1 | MTR_6g034405 | 44.444 | 243 | 103 | 7 | 1 | 239 | 1 | 215 | 1.58e-49 | 170 |
| MS.gene009458.t1 | MTR_3g114110 | 47.980 | 198 | 75 | 5 | 42 | 239 | 39 | 208 | 5.53e-49 | 167 |
| MS.gene009458.t1 | MTR_3g114110 | 47.980 | 198 | 75 | 5 | 42 | 239 | 39 | 208 | 1.45e-48 | 167 |
| MS.gene009458.t1 | MTR_1g054550 | 52.273 | 176 | 47 | 5 | 50 | 225 | 18 | 156 | 1.85e-42 | 147 |
| MS.gene009458.t1 | MTR_3g115660 | 60.577 | 104 | 35 | 1 | 136 | 239 | 1 | 98 | 4.58e-35 | 124 |
| MS.gene009458.t1 | MTR_1g054600 | 51.938 | 129 | 44 | 4 | 50 | 178 | 86 | 196 | 4.21e-29 | 112 |
| MS.gene009458.t1 | MTR_4g116930 | 39.552 | 134 | 34 | 2 | 179 | 312 | 1 | 87 | 1.86e-17 | 82.4 |
| MS.gene009458.t1 | MTR_5g043640 | 36.879 | 141 | 82 | 1 | 203 | 343 | 75 | 208 | 2.47e-14 | 72.4 |
| MS.gene009458.t1 | MTR_1g476030 | 33.588 | 131 | 84 | 2 | 222 | 349 | 4 | 134 | 3.59e-13 | 70.5 |
| MS.gene009458.t1 | MTR_6g027840 | 37.000 | 100 | 62 | 1 | 245 | 343 | 230 | 329 | 4.25e-12 | 67.4 |
| MS.gene009458.t1 | MTR_1g062770 | 37.705 | 122 | 66 | 4 | 231 | 343 | 43 | 163 | 4.44e-12 | 65.1 |
| MS.gene009458.t1 | MTR_4g075710 | 39.316 | 117 | 68 | 2 | 219 | 332 | 116 | 232 | 2.77e-11 | 64.7 |
| MS.gene009458.t1 | MTR_1g089180 | 37.113 | 97 | 60 | 1 | 233 | 328 | 348 | 444 | 7.05e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009458.t1 | AT2G17390 | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.10e-153 | 434 |
| MS.gene009458.t1 | AT4G35450 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 7.91e-149 | 423 |
| MS.gene009458.t1 | AT4G35450 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 7.91e-149 | 423 |
| MS.gene009458.t1 | AT4G35450 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 7.91e-149 | 423 |
| MS.gene009458.t1 | AT4G35450 | 63.510 | 359 | 112 | 7 | 1 | 349 | 1 | 350 | 2.85e-146 | 417 |
| MS.gene009458.t1 | AT4G35450 | 67.961 | 309 | 93 | 3 | 41 | 349 | 2 | 304 | 7.99e-146 | 414 |
| MS.gene009458.t1 | AT2G03430 | 39.000 | 100 | 61 | 0 | 229 | 328 | 87 | 186 | 3.51e-14 | 71.6 |
| MS.gene009458.t1 | AT3G23280 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.09e-13 | 72.4 |
| MS.gene009458.t1 | AT3G23280 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.19e-13 | 72.0 |
| MS.gene009458.t1 | AT5G53470 | 34.615 | 104 | 68 | 0 | 229 | 332 | 222 | 325 | 2.77e-13 | 70.5 |
| MS.gene009458.t1 | AT5G12320 | 35.354 | 99 | 64 | 0 | 233 | 331 | 19 | 117 | 5.28e-12 | 63.5 |
| MS.gene009458.t1 | AT4G27780 | 33.654 | 104 | 69 | 0 | 229 | 332 | 237 | 340 | 8.55e-12 | 65.9 |
| MS.gene009458.t1 | AT2G47450 | 40.351 | 114 | 66 | 2 | 220 | 332 | 123 | 235 | 1.65e-11 | 65.1 |
Find 89 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGCTGAACTTTAT+TGG | 0.122980 | 3.2:-3346262 | None:intergenic |
| GCTGCTTCTTCTGAAAATTC+TGG | 0.165755 | 3.2:+3346552 | MS.gene009458:CDS |
| TTGCAGTACTCTGCAAAATA+TGG | 0.286124 | 3.2:+3348494 | MS.gene009458:intron |
| CCCACATCTTCTGTTTCATC+TGG | 0.296289 | 3.2:-3346576 | None:intergenic |
| TTTAATTTCGCAACATCTAT+AGG | 0.306488 | 3.2:-3348528 | None:intergenic |
| TCAGCCATGGTCATAAAATT+AGG | 0.317600 | 3.2:-3346090 | None:intergenic |
| CTTCATTATGCAGCAGGTTA+TGG | 0.341988 | 3.2:+3348297 | MS.gene009458:CDS |
| TCTCAAAAGGATATTCCTTC+TGG | 0.350480 | 3.2:+3344401 | MS.gene009458:CDS |
| TATGACCATGGCTGAGCGCC+TGG | 0.371236 | 3.2:+3346098 | MS.gene009458:CDS |
| TGGAAAACCGGTCCCAGGTC+CGG | 0.375249 | 3.2:-3345208 | None:intergenic |
| AGAGAGAATGGCACGCATAA+AGG | 0.386835 | 3.2:+3346281 | MS.gene009458:CDS |
| CTCATTGCTGAGAAATCAAA+AGG | 0.392741 | 3.2:-3345255 | None:intergenic |
| CTGCTTCTTCTGAAAATTCT+GGG | 0.395319 | 3.2:+3346553 | MS.gene009458:CDS |
| TCAGCCAATTCCTTGATACT+TGG | 0.405646 | 3.2:-3345925 | None:intergenic |
| GGATCCAAGTATCAAGGAAT+TGG | 0.418761 | 3.2:+3345921 | MS.gene009458:intron |
| TACTGCTGATTATCAAAGTT+AGG | 0.425274 | 3.2:-3346036 | None:intergenic |
| CTGAACTTTATTGGACGGAT+TGG | 0.428989 | 3.2:-3346253 | None:intergenic |
| ACCAGTCCCAGGTGGAAAAC+CGG | 0.440893 | 3.2:-3345220 | None:intergenic |
| TTGAAAGCTGCGCTAGCCTC+TGG | 0.443610 | 3.2:+3347626 | MS.gene009458:CDS |
| AGGTCCGGGAGTTGCGTTCG+AGG | 0.459739 | 3.2:-3345193 | None:intergenic |
| GCGCAAGCTCTCCTTGAGGC+TGG | 0.462394 | 3.2:+3348234 | MS.gene009458:CDS |
| GGAAAACCGGTCCCAGGTCC+GGG | 0.463114 | 3.2:-3345207 | None:intergenic |
| TCGAACGCAACTCCCGGACC+TGG | 0.465039 | 3.2:+3345195 | MS.gene009458:CDS |
| ATGGGCATTCCTCCAACCTC+TGG | 0.465285 | 3.2:+3346522 | MS.gene009458:CDS |
| TCTAAAATATGTTTCAAAGA+TGG | 0.467672 | 3.2:-3346309 | None:intergenic |
| TGGAGCAAAAGTAGATGCTT+TGG | 0.468103 | 3.2:+3348254 | MS.gene009458:CDS |
| GAAGAAGTTGGGACTAGCCA+TGG | 0.471435 | 3.2:+3346503 | MS.gene009458:CDS |
| GTATCTTTCATCCATGCAAC+AGG | 0.477789 | 3.2:+3346056 | MS.gene009458:CDS |
| GAGAAATCAAAAGGGTTGGC+TGG | 0.479871 | 3.2:-3345246 | None:intergenic |
| CATGGCTTCCAATTCTCAAA+AGG | 0.488909 | 3.2:+3344388 | None:intergenic |
| AAACATCTTTCTCAAGAAGC+TGG | 0.492614 | 3.2:-3348569 | None:intergenic |
| GCTAGCCTCTGGTGCTGATA+AGG | 0.495452 | 3.2:+3347637 | MS.gene009458:CDS |
| ACAGCTCTTCATTATGCAGC+AGG | 0.511661 | 3.2:+3348291 | MS.gene009458:CDS |
| ACTGCTGATTATCAAAGTTA+GGG | 0.515114 | 3.2:-3346035 | None:intergenic |
| AGTTCAGCTTGAAGAGAGAA+TGG | 0.515247 | 3.2:+3346269 | MS.gene009458:CDS |
| ATTATGCAGCAGGTTATGGC+AGG | 0.522371 | 3.2:+3348301 | MS.gene009458:CDS |
| TTCATCCATGCAACAGGTCA+TGG | 0.523490 | 3.2:+3346062 | MS.gene009458:CDS |
| GCAGCTGCATCTCCAGAGGT+TGG | 0.525843 | 3.2:-3346534 | None:intergenic |
| GCAACTCCCGGACCTGGGAC+CGG | 0.525973 | 3.2:+3345201 | MS.gene009458:CDS |
| ATTGGTAAAACTTTCAAGCA+TGG | 0.527566 | 3.2:-3346235 | None:intergenic |
| GTCACAGGATCCAAGTATCA+AGG | 0.533298 | 3.2:+3345915 | MS.gene009458:intron |
| TTTGATTTCTCAGCAATGAG+TGG | 0.534737 | 3.2:+3345258 | MS.gene009458:CDS |
| TGCTGAGAAATCAAAAGGGT+TGG | 0.535067 | 3.2:-3345250 | None:intergenic |
| CCAGGTGGAAAACCGGTCCC+AGG | 0.535701 | 3.2:-3345213 | None:intergenic |
| GTGGCCTTGCTCCTTGAAAA+CGG | 0.539036 | 3.2:+3348333 | MS.gene009458:CDS |
| CCTGGGTAATGCATTGATGC+AGG | 0.543657 | 3.2:+3346116 | MS.gene009458:CDS |
| CGAACGCAACTCCCGGACCT+GGG | 0.544955 | 3.2:+3345196 | MS.gene009458:CDS |
| TCAAGCTGAACTTTATTGGA+CGG | 0.545387 | 3.2:-3346258 | None:intergenic |
| AGATCCATCATTCAATCAGA+TGG | 0.548584 | 3.2:+3345960 | MS.gene009458:CDS |
| CAGCTTCAGAAAACTTTGCA+TGG | 0.549622 | 3.2:+3345988 | MS.gene009458:CDS |
| ACATCCTCGAACGCAACTCC+CGG | 0.550672 | 3.2:+3345189 | MS.gene009458:CDS |
| ATGACCATGGCTGAGCGCCT+GGG | 0.553159 | 3.2:+3346099 | MS.gene009458:CDS |
| GCCAGATGAAACAGAAGATG+TGG | 0.557340 | 3.2:+3346575 | MS.gene009458:CDS |
| TTTGCATGGAGGAGCACCAC+AGG | 0.559317 | 3.2:+3346002 | MS.gene009458:CDS |
| AGTACTCTGCAAAATATGGA+TGG | 0.567263 | 3.2:+3348498 | MS.gene009458:intron |
| ATTTGCCATGACCTGTTGCA+TGG | 0.569040 | 3.2:-3346067 | None:intergenic |
| GTTCATCATACTGCTAGTGT+TGG | 0.576940 | 3.2:+3346618 | MS.gene009458:CDS |
| AAGAAGTTGGGACTAGCCAT+GGG | 0.580948 | 3.2:+3346504 | MS.gene009458:CDS |
| GCTGCATCTCCAGAGGTTGG+AGG | 0.582935 | 3.2:-3346531 | None:intergenic |
| CAAGCATGGAAGACATCGAT+GGG | 0.587730 | 3.2:-3346221 | None:intergenic |
| ATAAACCTCATCATTACAGC+AGG | 0.589232 | 3.2:-3346351 | None:intergenic |
| TCAGCCATCTGATTGAATGA+TGG | 0.589706 | 3.2:-3345964 | None:intergenic |
| TAAGGATGAAGAAGATTCAG+AGG | 0.591403 | 3.2:+3347655 | MS.gene009458:CDS |
| TTGGCTGGAAAACCAGTCCC+AGG | 0.592571 | 3.2:-3345231 | None:intergenic |
| TCAAGCATGGAAGACATCGA+TGG | 0.593586 | 3.2:-3346222 | None:intergenic |
| GTACTCTGCAAAATATGGAT+GGG | 0.595986 | 3.2:+3348499 | MS.gene009458:intron |
| AGAAGCAGCTGCATCTCCAG+AGG | 0.600724 | 3.2:-3346538 | None:intergenic |
| TGCAGCAGGTTATGGCAGGA+AGG | 0.601460 | 3.2:+3348305 | MS.gene009458:CDS |
| AAGGATGAAGAAGATTCAGA+GGG | 0.609631 | 3.2:+3347656 | MS.gene009458:CDS |
| ATTACCCAGGCGCTCAGCCA+TGG | 0.617162 | 3.2:-3346103 | None:intergenic |
| TTCATCCTTATCAGCACCAG+AGG | 0.620315 | 3.2:-3347642 | None:intergenic |
| TGCTAGTGTTGGTGACATTG+AGG | 0.628525 | 3.2:+3346629 | MS.gene009458:CDS |
| TCATTGCTGAGAAATCAAAA+GGG | 0.629369 | 3.2:-3345254 | None:intergenic |
| CATGGAGGAGCACCACAGGA+TGG | 0.634179 | 3.2:+3346006 | MS.gene009458:CDS |
| AGACGAGAAAGCTGGTTCAG+CGG | 0.641290 | 3.2:+3345143 | MS.gene009458:intron |
| TAGATACTGGAATGATGAGG+AGG | 0.645865 | 3.2:+3346476 | MS.gene009458:intron |
| CCTGCATCAATGCATTACCC+AGG | 0.649558 | 3.2:-3346116 | None:intergenic |
| CCAGATGAAACAGAAGATGT+GGG | 0.652505 | 3.2:+3346576 | MS.gene009458:CDS |
| AGAGGTTGGAGGAATGCCCA+TGG | 0.656046 | 3.2:-3346520 | None:intergenic |
| ATCTAGATACTGGAATGATG+AGG | 0.659169 | 3.2:+3346473 | MS.gene009458:intron |
| GGAGGAGCACCACAGGATGG+TGG | 0.665535 | 3.2:+3346009 | MS.gene009458:CDS |
| CATCTTTCTCAAGAAGCTGG+AGG | 0.671030 | 3.2:-3348566 | None:intergenic |
| TTATGGCAGGAAGGAATGTG+TGG | 0.674267 | 3.2:+3348314 | MS.gene009458:CDS |
| TTAGGGAGACCACCATCCTG+TGG | 0.684695 | 3.2:-3346018 | None:intergenic |
| GCTGGAAAACCAGTCCCAGG+TGG | 0.687890 | 3.2:-3345228 | None:intergenic |
| GTGTGCGCAAGCTCTCCTTG+AGG | 0.688818 | 3.2:+3348230 | MS.gene009458:CDS |
| GCGGTCCTGCTGTAATGATG+AGG | 0.692207 | 3.2:+3346346 | MS.gene009458:CDS |
| CTTCAGAAAACTTTGCATGG+AGG | 0.695368 | 3.2:+3345991 | MS.gene009458:CDS |
| TTAGATGAGATAGAGAATGG+CGG | 0.730427 | 3.2:+3346327 | MS.gene009458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAGAAAATCATATTTTA+TGG | + | chr3.2:3346386-3346405 | MS.gene009458:intron | 10.0% |
| !!! | ATGATTTTCTTTTTTAAAAA+TGG | - | chr3.2:3346380-3346399 | None:intergenic | 10.0% |
| !! | ATAAATAAATAATACAATGG+TGG | - | chr3.2:3347550-3347569 | None:intergenic | 15.0% |
| !! | ATCTTTGTAATAATCATTTA+AGG | + | chr3.2:3345689-3345708 | MS.gene009458:intron | 15.0% |
| !! | CCATTGTATTATTTATTTAT+CGG | + | chr3.2:3347550-3347569 | MS.gene009458:intron | 15.0% |
| !!! | AAAATCATATTTTATGGTTT+TGG | + | chr3.2:3346392-3346411 | MS.gene009458:intron | 15.0% |
| !!! | TAGTTAAATAGTTTTATACA+TGG | - | chr3.2:3345863-3345882 | None:intergenic | 15.0% |
| !! | AATACTATTATGATCCAAAT+TGG | - | chr3.2:3345654-3345673 | None:intergenic | 20.0% |
| !! | ACATAATTGAATATAATCAC+AGG | + | chr3.2:3344673-3344692 | MS.gene009458:intron | 20.0% |
| !! | AGTATTTACACTAATCAATT+AGG | + | chr3.2:3347601-3347620 | MS.gene009458:intron | 20.0% |
| !! | ATACATTCTTATCTAACAAT+CGG | - | chr3.2:3346183-3346202 | None:intergenic | 20.0% |
| !! | ATTACTATAATACTTATGCA+TGG | - | chr3.2:3347117-3347136 | None:intergenic | 20.0% |
| !! | ATTTACATAACAAATTATGG+TGG | - | chr3.2:3346423-3346442 | None:intergenic | 20.0% |
| !! | ATTTGTATAGACAATACAAA+GGG | + | chr3.2:3344925-3344944 | MS.gene009458:intron | 20.0% |
| !! | CATATTAGTAAAAATCACAT+AGG | - | chr3.2:3344893-3344912 | None:intergenic | 20.0% |
| !! | CCAATTTACATAACAAATTA+TGG | - | chr3.2:3346426-3346445 | None:intergenic | 20.0% |
| !! | CCGATAAATAAATAATACAA+TGG | - | chr3.2:3347553-3347572 | None:intergenic | 20.0% |
| !! | GAATTTAAAGAGATGAAAAT+AGG | + | chr3.2:3346785-3346804 | MS.gene009458:intron | 20.0% |
| !! | GTATTTACACTAATCAATTA+GGG | + | chr3.2:3347602-3347621 | MS.gene009458:intron | 20.0% |
| !! | TACATCAATAACAATTAACA+GGG | - | chr3.2:3345366-3345385 | None:intergenic | 20.0% |
| !! | TATAAAACTATTTAACTACG+TGG | + | chr3.2:3345865-3345884 | MS.gene009458:intron | 20.0% |
| !! | TATTTGTATAGACAATACAA+AGG | + | chr3.2:3344924-3344943 | MS.gene009458:intron | 20.0% |
| !! | TGTACAAAAAAAACATAATC+AGG | - | chr3.2:3344535-3344554 | None:intergenic | 20.0% |
| !! | TGTTTATTTGTTTAATTCGA+AGG | + | chr3.2:3347434-3347453 | MS.gene009458:intron | 20.0% |
| !! | TTACATCAATAACAATTAAC+AGG | - | chr3.2:3345367-3345386 | None:intergenic | 20.0% |
| !!! | AAACTGATATATTTTTCGAA+AGG | - | chr3.2:3346965-3346984 | None:intergenic | 20.0% |
| !!! | AGAATTTATGTATTTGTTGT+TGG | + | chr3.2:3347776-3347795 | MS.gene009458:intron | 20.0% |
| !!! | AGAATTTTATTTTTCTCAAG+AGG | - | chr3.2:3347038-3347057 | None:intergenic | 20.0% |
| !!! | ATGAAACTTTTTTGAATAGA+AGG | + | chr3.2:3346733-3346752 | MS.gene009458:intron | 20.0% |
| !!! | ATTGATTTTTTGTTCACTAT+CGG | + | chr3.2:3344475-3344494 | MS.gene009458:intron | 20.0% |
| !!! | CAAAATTAGTAAAGTGTTAT+TGG | - | chr3.2:3345022-3345041 | None:intergenic | 20.0% |
| !!! | CCATAATTTGTTATGTAAAT+TGG | + | chr3.2:3346423-3346442 | MS.gene009458:intron | 20.0% |
| !!! | CTATGTGATTTTTACTAATA+TGG | + | chr3.2:3344891-3344910 | MS.gene009458:intron | 20.0% |
| !!! | GAGTTTGATTTTTTTTTTTG+TGG | + | chr3.2:3344576-3344595 | MS.gene009458:intron | 20.0% |
| !!! | TACATAAATTCTAAGAAACA+AGG | - | chr3.2:3347768-3347787 | None:intergenic | 20.0% |
| !!! | TCTAAAATATGTTTCAAAGA+TGG | - | chr3.2:3346312-3346331 | None:intergenic | 20.0% |
| !!! | TTGTTTAAGGTAATATCAAA+AGG | + | chr3.2:3346864-3346883 | MS.gene009458:intron | 20.0% |
| !!! | TTTATTGAAGAGTTTAAGTT+AGG | + | chr3.2:3345729-3345748 | MS.gene009458:intron | 20.0% |
| ! | AAAATGAAAAGAGAAAGAGT+CGG | - | chr3.2:3345795-3345814 | None:intergenic | 25.0% |
| ! | AAAGCTTATAGAATGATAGT+TGG | - | chr3.2:3346922-3346941 | None:intergenic | 25.0% |
| ! | AATTATAGATAGATACCAGA+AGG | - | chr3.2:3344419-3344438 | None:intergenic | 25.0% |
| ! | TTAAAATGTCAATATGTCAC+AGG | + | chr3.2:3345900-3345919 | MS.gene009458:intron | 25.0% |
| ! | TTAATCCATACATTGGAATT+TGG | - | chr3.2:3348182-3348201 | None:intergenic | 25.0% |
| ! | TTACCTATAAAACACAAACA+TGG | + | chr3.2:3344604-3344623 | MS.gene009458:intron | 25.0% |
| !! | AAATCCTAATTTTATGACCA+TGG | + | chr3.2:3346086-3346105 | MS.gene009458:CDS | 25.0% |
| !! | AACGTTGTGTTCTAATTTTA+GGG | - | chr3.2:3347199-3347218 | None:intergenic | 25.0% |
| !! | AATTCTTTTCATCTAGATAC+TGG | + | chr3.2:3346463-3346482 | MS.gene009458:intron | 25.0% |
| !! | ACTATCATTCTATAAGCTTT+TGG | + | chr3.2:3346922-3346941 | MS.gene009458:intron | 25.0% |
| !! | ATTTTAGATGAGATAGAGAA+TGG | + | chr3.2:3346324-3346343 | MS.gene009458:CDS | 25.0% |
| !! | CTATCATTCTATAAGCTTTT+GGG | + | chr3.2:3346923-3346942 | MS.gene009458:intron | 25.0% |
| !! | TAACGTTGTGTTCTAATTTT+AGG | - | chr3.2:3347200-3347219 | None:intergenic | 25.0% |
| !! | TTTAATTTCGCAACATCTAT+AGG | - | chr3.2:3348531-3348550 | None:intergenic | 25.0% |
| !!! | AAATTCTGAACTTTTTTCAG+AGG | + | chr3.2:3345519-3345538 | MS.gene009458:intron | 25.0% |
| !!! | ATGTGCTTTAATTTTACTCT+TGG | + | chr3.2:3345110-3345129 | MS.gene009458:intron | 25.0% |
| !!! | CCAGTAAAACACAATTTTTT+GGG | + | chr3.2:3347330-3347349 | MS.gene009458:intron | 25.0% |
| !!! | GCATATTTTAATCCATACAT+TGG | - | chr3.2:3348189-3348208 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTCACTCACTA+GGG | + | chr3.2:3345805-3345824 | MS.gene009458:intron | 25.0% |
| AAATGAAAAGAGAAAGAGTC+GGG | - | chr3.2:3345794-3345813 | None:intergenic | 30.0% | |
| AACAAGATGTAGGAAGAAAT+TGG | - | chr3.2:3348418-3348437 | None:intergenic | 30.0% | |
| AACACACTTATCATGATATC+TGG | - | chr3.2:3344785-3344804 | None:intergenic | 30.0% | |
| ACAAATTTGTAGTTGTGCTT+GGG | + | chr3.2:3346709-3346728 | MS.gene009458:intron | 30.0% | |
| AGCAAACCAATACTAAAGAA+AGG | - | chr3.2:3347488-3347507 | None:intergenic | 30.0% | |
| AGTTTATTGAAGCAAGTTCT+AGG | + | chr3.2:3347223-3347242 | MS.gene009458:intron | 30.0% | |
| ATTGCTCCTTTCTTTAGTAT+TGG | + | chr3.2:3347479-3347498 | MS.gene009458:intron | 30.0% | |
| ATTGGTAAAACTTTCAAGCA+TGG | - | chr3.2:3346238-3346257 | None:intergenic | 30.0% | |
| GAAGAAAATCACAATGCTAT+AGG | - | chr3.2:3347879-3347898 | None:intergenic | 30.0% | |
| GGAATATAAGTCAATTGAGT+AGG | - | chr3.2:3347270-3347289 | None:intergenic | 30.0% | |
| GTAATTAATTGTCTCACAGT+TGG | + | chr3.2:3346816-3346835 | MS.gene009458:intron | 30.0% | |
| GTTTCTGCATGAATTGTTTA+AGG | + | chr3.2:3346851-3346870 | MS.gene009458:intron | 30.0% | |
| TAAGTTAGGTGAAGAATTTG+AGG | + | chr3.2:3345743-3345762 | MS.gene009458:intron | 30.0% | |
| TAGAATATTAGATTCTAGCC+TGG | + | chr3.2:3348032-3348051 | MS.gene009458:intron | 30.0% | |
| TCATTGCTGAGAAATCAAAA+GGG | - | chr3.2:3345257-3345276 | None:intergenic | 30.0% | |
| TTATAGTAATGTAGTCCACT+AGG | + | chr3.2:3347127-3347146 | MS.gene009458:intron | 30.0% | |
| TTCTTCCAAATTCCAATGTA+TGG | + | chr3.2:3348174-3348193 | MS.gene009458:intron | 30.0% | |
| ! | ACTGCTGATTATCAAAGTTA+GGG | - | chr3.2:3346038-3346057 | None:intergenic | 30.0% |
| ! | AGTACTTTCATTTAGAACCA+TGG | + | chr3.2:3347801-3347820 | MS.gene009458:intron | 30.0% |
| ! | ATGGAATCATTTTCAAACCA+AGG | - | chr3.2:3347098-3347117 | None:intergenic | 30.0% |
| ! | CCCAAAAAATTGTGTTTTAC+TGG | - | chr3.2:3347333-3347352 | None:intergenic | 30.0% |
| ! | GAAGTGTGTTATTGTTGTAT+TGG | + | chr3.2:3344750-3344769 | MS.gene009458:intron | 30.0% |
| ! | TAAGTGTGTTATTGTCATGT+TGG | + | chr3.2:3344795-3344814 | MS.gene009458:intron | 30.0% |
| ! | TACTGCTGATTATCAAAGTT+AGG | - | chr3.2:3346039-3346058 | None:intergenic | 30.0% |
| ! | TGCTATTTGCATTATATGTG+TGG | + | chr3.2:3345314-3345333 | MS.gene009458:intron | 30.0% |
| ! | TGTCCATGTTTGTGTTTTAT+AGG | - | chr3.2:3344610-3344629 | None:intergenic | 30.0% |
| ! | TTACATTTTGCTTGTGGTTA+CGG | + | chr3.2:3347689-3347708 | MS.gene009458:CDS | 30.0% |
| !! | ACATGCATGTTTTTATAAGC+TGG | + | chr3.2:3345416-3345435 | MS.gene009458:intron | 30.0% |
| !! | AGGAATATCCTTTTGAGAAT+TGG | - | chr3.2:3344399-3344418 | None:intergenic | 30.0% |
| !! | CTTTTCATTTTTCACTCACT+AGG | + | chr3.2:3345804-3345823 | MS.gene009458:intron | 30.0% |
| !! | GAATTTTGACGATTCTAGTT+TGG | + | chr3.2:3348151-3348170 | MS.gene009458:intron | 30.0% |
| !! | TACTAATTTTGCTGTAGTCT+TGG | + | chr3.2:3345031-3345050 | MS.gene009458:intron | 30.0% |
| !!! | ATTTTTTTAGACGAGAAAGC+TGG | + | chr3.2:3345135-3345154 | MS.gene009458:intron | 30.0% |
| !!! | CATATTGACTTTTCGCAATA+TGG | + | chr3.2:3346657-3346676 | MS.gene009458:intron | 30.0% |
| !!! | GCCAGTAAAACACAATTTTT+TGG | + | chr3.2:3347329-3347348 | MS.gene009458:intron | 30.0% |
| !!! | TCTGGGAATAGGTTTTATTA+GGG | + | chr3.2:3345494-3345513 | MS.gene009458:intron | 30.0% |
| !!! | TTCTGGGAATAGGTTTTATT+AGG | + | chr3.2:3345493-3345512 | MS.gene009458:intron | 30.0% |
| AAAATCGCATAGGAAGATAC+TGG | - | chr3.2:3344858-3344877 | None:intergenic | 35.0% | |
| AAACATCTTTCTCAAGAAGC+TGG | - | chr3.2:3348572-3348591 | None:intergenic | 35.0% | |
| AAATTGGCAGCAACTACAAA+AGG | - | chr3.2:3345638-3345657 | None:intergenic | 35.0% | |
| AAGGATGAAGAAGATTCAGA+GGG | + | chr3.2:3347656-3347675 | MS.gene009458:CDS | 35.0% | |
| ACTTCCCTGAGTAACTTATA+AGG | + | chr3.2:3347294-3347313 | MS.gene009458:intron | 35.0% | |
| AGACACTTGTCCTTTACTTA+GGG | + | chr3.2:3344957-3344976 | MS.gene009458:intron | 35.0% | |
| AGATCCATCATTCAATCAGA+TGG | + | chr3.2:3345960-3345979 | MS.gene009458:CDS | 35.0% | |
| AGCTTTCCATATCATGATAG+TGG | + | chr3.2:3345606-3345625 | MS.gene009458:intron | 35.0% | |
| AGTACTCTGCAAAATATGGA+TGG | + | chr3.2:3348498-3348517 | MS.gene009458:intron | 35.0% | |
| ATAAACCTCATCATTACAGC+AGG | - | chr3.2:3346354-3346373 | None:intergenic | 35.0% | |
| ATACCACTACAACAAGATGT+AGG | - | chr3.2:3348428-3348447 | None:intergenic | 35.0% | |
| ATATGCTCCTGATATATTCC+AGG | + | chr3.2:3348203-3348222 | MS.gene009458:intron | 35.0% | |
| ATCCTCCTTATAAGTTACTC+AGG | - | chr3.2:3347302-3347321 | None:intergenic | 35.0% | |
| ATCTAGATACTGGAATGATG+AGG | + | chr3.2:3346473-3346492 | MS.gene009458:intron | 35.0% | |
| ATGTATATGCTGTCTATCAC+AGG | + | chr3.2:3346197-3346216 | MS.gene009458:intron | 35.0% | |
| CTCATTGCTGAGAAATCAAA+AGG | - | chr3.2:3345258-3345277 | None:intergenic | 35.0% | |
| CTCTTCAAGCTGAACTTTAT+TGG | - | chr3.2:3346265-3346284 | None:intergenic | 35.0% | |
| CTGATTCCACTATCATGATA+TGG | - | chr3.2:3345615-3345634 | None:intergenic | 35.0% | |
| GACAAATTTGTAGTTGTGCT+TGG | + | chr3.2:3346708-3346727 | MS.gene009458:intron | 35.0% | |
| GACACTAGTAAAAATCGCAT+AGG | - | chr3.2:3344868-3344887 | None:intergenic | 35.0% | |
| GCCATATATATACAAGAACC+AGG | - | chr3.2:3348053-3348072 | None:intergenic | 35.0% | |
| GTAATATATGTAACACCGAC+AGG | - | chr3.2:3344829-3344848 | None:intergenic | 35.0% | |
| GTACTCTGCAAAATATGGAT+GGG | + | chr3.2:3348499-3348518 | MS.gene009458:intron | 35.0% | |
| TAAGGATGAAGAAGATTCAG+AGG | + | chr3.2:3347655-3347674 | MS.gene009458:CDS | 35.0% | |
| TAGACACTTGTCCTTTACTT+AGG | + | chr3.2:3344956-3344975 | MS.gene009458:intron | 35.0% | |
| TCAAGCTGAACTTTATTGGA+CGG | - | chr3.2:3346261-3346280 | None:intergenic | 35.0% | |
| TCAGCCATGGTCATAAAATT+AGG | - | chr3.2:3346093-3346112 | None:intergenic | 35.0% | |
| TCCTCCTTATAAGTTACTCA+GGG | - | chr3.2:3347301-3347320 | None:intergenic | 35.0% | |
| TCTCAAAAGGATATTCCTTC+TGG | + | chr3.2:3344401-3344420 | MS.gene009458:CDS | 35.0% | |
| TGAACTAAACCTAACCACAT+CGG | - | chr3.2:3346761-3346780 | None:intergenic | 35.0% | |
| TGTCATCGTACAATGATTCT+GGG | + | chr3.2:3345477-3345496 | MS.gene009458:intron | 35.0% | |
| TTAGATGAGATAGAGAATGG+CGG | + | chr3.2:3346327-3346346 | MS.gene009458:CDS | 35.0% | |
| TTCTATTCCAAACAACTCCT+TGG | + | chr3.2:3347078-3347097 | MS.gene009458:intron | 35.0% | |
| TTGCAGTACTCTGCAAAATA+TGG | + | chr3.2:3348494-3348513 | MS.gene009458:intron | 35.0% | |
| TTTCAAACCAAGGAGTTGTT+TGG | - | chr3.2:3347088-3347107 | None:intergenic | 35.0% | |
| ! | ACTGCTTTACATTTTGCTTG+TGG | + | chr3.2:3347683-3347702 | MS.gene009458:CDS | 35.0% |
| ! | CATCTTGTTGTAGTGGTATT+TGG | + | chr3.2:3348429-3348448 | MS.gene009458:intron | 35.0% |
| ! | CTGCTTCTTCTGAAAATTCT+GGG | + | chr3.2:3346553-3346572 | MS.gene009458:CDS | 35.0% |
| ! | GCCTGGTTCTTGTATATATA+TGG | + | chr3.2:3348049-3348068 | MS.gene009458:intron | 35.0% |
| ! | TTTGATTTCTCAGCAATGAG+TGG | + | chr3.2:3345258-3345277 | MS.gene009458:CDS | 35.0% |
| ! | TTTTGTAGTTGCTGCCAATT+TGG | + | chr3.2:3345637-3345656 | MS.gene009458:intron | 35.0% |
| !!! | GCGGGTGTTTTATTTCTTTA+AGG | - | chr3.2:3347159-3347178 | None:intergenic | 35.0% |
| !!! | TATTGTCGTCTTGGTTTTGT+TGG | + | chr3.2:3344699-3344718 | MS.gene009458:intron | 35.0% |
| AAGCATGCAACCTTTACACA+AGG | - | chr3.2:3347412-3347431 | None:intergenic | 40.0% | |
| ACAATGCTGCTATGCTCATT+TGG | + | chr3.2:3348006-3348025 | MS.gene009458:intron | 40.0% | |
| ACAGGCTGCAAAATTGCAAA+TGG | - | chr3.2:3345460-3345479 | None:intergenic | 40.0% | |
| AGCAAGTGAAGAATGTAACG+AGG | + | chr3.2:3347829-3347848 | MS.gene009458:intron | 40.0% | |
| AGCATGCAACCTTTACACAA+GGG | - | chr3.2:3347411-3347430 | None:intergenic | 40.0% | |
| AGTAATGTAGTCCACTAGGT+TGG | + | chr3.2:3347131-3347150 | MS.gene009458:intron | 40.0% | |
| AGTTCAGCTTGAAGAGAGAA+TGG | + | chr3.2:3346269-3346288 | MS.gene009458:CDS | 40.0% | |
| CACTTCACCTGGAATATATC+AGG | - | chr3.2:3348213-3348232 | None:intergenic | 40.0% | |
| CAGAATCATTGTACGATGAC+AGG | - | chr3.2:3345478-3345497 | None:intergenic | 40.0% | |
| CAGCTTCAGAAAACTTTGCA+TGG | + | chr3.2:3345988-3346007 | MS.gene009458:CDS | 40.0% | |
| CAGTAGTGTCATCATTGAGT+CGG | - | chr3.2:3347983-3348002 | None:intergenic | 40.0% | |
| CCAGATGAAACAGAAGATGT+GGG | + | chr3.2:3346576-3346595 | MS.gene009458:CDS | 40.0% | |
| CGGACAGTATTCATAATGCT+TGG | + | chr3.2:3347913-3347932 | MS.gene009458:intron | 40.0% | |
| CTGAACTTTATTGGACGGAT+TGG | - | chr3.2:3346256-3346275 | None:intergenic | 40.0% | |
| CTGTCATCGTACAATGATTC+TGG | + | chr3.2:3345476-3345495 | MS.gene009458:intron | 40.0% | |
| CTTCAGAAAACTTTGCATGG+AGG | + | chr3.2:3345991-3346010 | MS.gene009458:CDS | 40.0% | |
| CTTCATTATGCAGCAGGTTA+TGG | + | chr3.2:3348297-3348316 | MS.gene009458:CDS | 40.0% | |
| GAAATTGGCATGAACAGTTG+AGG | - | chr3.2:3348403-3348422 | None:intergenic | 40.0% | |
| GACTCAATGATGACACTACT+GGG | + | chr3.2:3347982-3348001 | MS.gene009458:intron | 40.0% | |
| GCAAAAAATACTTCTGCAGC+GGG | - | chr3.2:3347177-3347196 | None:intergenic | 40.0% | |
| GGATCCAAGTATCAAGGAAT+TGG | + | chr3.2:3345921-3345940 | MS.gene009458:intron | 40.0% | |
| GGCAAAAAATACTTCTGCAG+CGG | - | chr3.2:3347178-3347197 | None:intergenic | 40.0% | |
| GTATCTTTCATCCATGCAAC+AGG | + | chr3.2:3346056-3346075 | MS.gene009458:CDS | 40.0% | |
| GTTCATCATACTGCTAGTGT+TGG | + | chr3.2:3346618-3346637 | MS.gene009458:CDS | 40.0% | |
| TAGATACTGGAATGATGAGG+AGG | + | chr3.2:3346476-3346495 | MS.gene009458:intron | 40.0% | |
| TCAGCCAATTCCTTGATACT+TGG | - | chr3.2:3345928-3345947 | None:intergenic | 40.0% | |
| TCAGCCATCTGATTGAATGA+TGG | - | chr3.2:3345967-3345986 | None:intergenic | 40.0% | |
| TCCCTGAGTAACTTATAAGG+AGG | + | chr3.2:3347297-3347316 | MS.gene009458:intron | 40.0% | |
| TCTTCACTTGCTTTACACCA+TGG | - | chr3.2:3347821-3347840 | None:intergenic | 40.0% | |
| TGCTGAGAAATCAAAAGGGT+TGG | - | chr3.2:3345253-3345272 | None:intergenic | 40.0% | |
| TGGAGCAAAAGTAGATGCTT+TGG | + | chr3.2:3348254-3348273 | MS.gene009458:CDS | 40.0% | |
| TTGTGTATGCCCTTGTGTAA+AGG | + | chr3.2:3347399-3347418 | MS.gene009458:intron | 40.0% | |
| TTTATAAGCTGGTCATGCGT+TGG | + | chr3.2:3345427-3345446 | MS.gene009458:intron | 40.0% | |
| ! | CGTACAATGATTCTGGGAAT+AGG | + | chr3.2:3345483-3345502 | MS.gene009458:intron | 40.0% |
| ! | CTTCCTACATCTTGTTGTAG+TGG | + | chr3.2:3348422-3348441 | MS.gene009458:intron | 40.0% |
| ! | GCTGCTTCTTCTGAAAATTC+TGG | + | chr3.2:3346552-3346571 | MS.gene009458:CDS | 40.0% |
| ! | GGACTTTTGAACTCATCGTA+TGG | + | chr3.2:3345764-3345783 | MS.gene009458:intron | 40.0% |
| !! | AGCTTTTGGGAGCTTCATAT+TGG | + | chr3.2:3346936-3346955 | MS.gene009458:intron | 40.0% |
| !! | GCTTTTGGGAGCTTCATATT+GGG | + | chr3.2:3346937-3346956 | MS.gene009458:intron | 40.0% |
| !! | TAAAGAACGCTTTTTGCCGA+CGG | - | chr3.2:3345554-3345573 | None:intergenic | 40.0% |
| !! | TCTTTAAGGTACCAACCTAG+TGG | - | chr3.2:3347145-3347164 | None:intergenic | 40.0% |
| !!! | GAGGAGGTTTTGAAGAAGTT+GGG | + | chr3.2:3346492-3346511 | MS.gene009458:CDS | 40.0% |
| !!! | TGAGGAGGTTTTGAAGAAGT+TGG | + | chr3.2:3346491-3346510 | MS.gene009458:CDS | 40.0% |
| AAGTTACTCAGGGAAGTCTG+TGG | - | chr3.2:3347291-3347310 | None:intergenic | 45.0% | |
| AATACTGTCCGAGTTCACTG+TGG | - | chr3.2:3347904-3347923 | None:intergenic | 45.0% | |
| ACAGCTCTTCATTATGCAGC+AGG | + | chr3.2:3348291-3348310 | MS.gene009458:CDS | 45.0% | |
| AGAGAGAATGGCACGCATAA+AGG | + | chr3.2:3346281-3346300 | MS.gene009458:CDS | 45.0% | |
| ATTATGCAGCAGGTTATGGC+AGG | + | chr3.2:3348301-3348320 | MS.gene009458:CDS | 45.0% | |
| ATTTGCCATGACCTGTTGCA+TGG | - | chr3.2:3346070-3346089 | None:intergenic | 45.0% | |
| CAAGCATGGAAGACATCGAT+GGG | - | chr3.2:3346224-3346243 | None:intergenic | 45.0% | |
| CATCTTTCTCAAGAAGCTGG+AGG | - | chr3.2:3348569-3348588 | None:intergenic | 45.0% | |
| CCCACATCTTCTGTTTCATC+TGG | - | chr3.2:3346579-3346598 | None:intergenic | 45.0% | |
| CGACTCAATGATGACACTAC+TGG | + | chr3.2:3347981-3348000 | MS.gene009458:intron | 45.0% | |
| GCCAGATGAAACAGAAGATG+TGG | + | chr3.2:3346575-3346594 | MS.gene009458:CDS | 45.0% | |
| GTCACAGGATCCAAGTATCA+AGG | + | chr3.2:3345915-3345934 | MS.gene009458:intron | 45.0% | |
| GTGAAGAATGTAACGAGGCT+CGG | + | chr3.2:3347834-3347853 | MS.gene009458:intron | 45.0% | |
| GTGCAGTACACCCTAAGTAA+AGG | - | chr3.2:3344970-3344989 | None:intergenic | 45.0% | |
| TCAAGCATGGAAGACATCGA+TGG | - | chr3.2:3346225-3346244 | None:intergenic | 45.0% | |
| TGAAGAATGTAACGAGGCTC+GGG | + | chr3.2:3347835-3347854 | MS.gene009458:intron | 45.0% | |
| TTATGGCAGGAAGGAATGTG+TGG | + | chr3.2:3348314-3348333 | MS.gene009458:CDS | 45.0% | |
| TTCATCCATGCAACAGGTCA+TGG | + | chr3.2:3346062-3346081 | MS.gene009458:CDS | 45.0% | |
| TTCATCCTTATCAGCACCAG+AGG | - | chr3.2:3347645-3347664 | None:intergenic | 45.0% | |
| TTCTTCCACCACAGTGAACT+CGG | + | chr3.2:3347893-3347912 | MS.gene009458:intron | 45.0% | |
| ! | CAATGGTGGAACTTCACAAC+AGG | - | chr3.2:3347536-3347555 | None:intergenic | 45.0% |
| ! | GAGAAATCAAAAGGGTTGGC+TGG | - | chr3.2:3345249-3345268 | None:intergenic | 45.0% |
| !! | AAAGAACGCTTTTTGCCGAC+GGG | - | chr3.2:3345553-3345572 | None:intergenic | 45.0% |
| !! | AAGAAGTTGGGACTAGCCAT+GGG | + | chr3.2:3346504-3346523 | MS.gene009458:CDS | 45.0% |
| !! | CACAGGTGTTATTGTCGTCT+TGG | + | chr3.2:3344690-3344709 | MS.gene009458:intron | 45.0% |
| !! | TGCTAGTGTTGGTGACATTG+AGG | + | chr3.2:3346629-3346648 | MS.gene009458:CDS | 45.0% |
| !! | TTGAATAGAAGGTGCCGATG+TGG | + | chr3.2:3346744-3346763 | MS.gene009458:intron | 45.0% |
| !!! | CGTCTTGGTTTTGTTGGTGT+TGG | + | chr3.2:3344705-3344724 | MS.gene009458:intron | 45.0% |
| AGAAGGAGGAGAGGGCTAAA+TGG | - | chr3.2:3348090-3348109 | None:intergenic | 50.0% | |
| AGCTGGTCATGCGTTGGATT+TGG | + | chr3.2:3345433-3345452 | MS.gene009458:intron | 50.0% | |
| ATATGTAACACCGACAGGCG+TGG | - | chr3.2:3344824-3344843 | None:intergenic | 50.0% | |
| CCTGCATCAATGCATTACCC+AGG | - | chr3.2:3346119-3346138 | None:intergenic | 50.0% | |
| TCTAACAAGCCCTCCCTAGA+AGG | - | chr3.2:3348107-3348126 | None:intergenic | 50.0% | |
| TTAGCCCTCTCCTCCTTCTA+GGG | + | chr3.2:3348091-3348110 | MS.gene009458:intron | 50.0% | |
| TTTAGCCCTCTCCTCCTTCT+AGG | + | chr3.2:3348090-3348109 | MS.gene009458:intron | 50.0% | |
| ! | ACACTGCAGCACCGTTTTCA+AGG | - | chr3.2:3348347-3348366 | None:intergenic | 50.0% |
| ! | AGACGAGAAAGCTGGTTCAG+CGG | + | chr3.2:3345143-3345162 | MS.gene009458:intron | 50.0% |
| ! | CCTGGGTAATGCATTGATGC+AGG | + | chr3.2:3346116-3346135 | MS.gene009458:CDS | 50.0% |
| ! | GTGGCCTTGCTCCTTGAAAA+CGG | + | chr3.2:3348333-3348352 | MS.gene009458:CDS | 50.0% |
| ! | TTTTGCTTGTGGTTACGGCG+AGG | + | chr3.2:3347694-3347713 | MS.gene009458:CDS | 50.0% |
| !! | AGCACCGTTTTCAAGGAGCA+AGG | - | chr3.2:3348340-3348359 | None:intergenic | 50.0% |
| !! | CTACTTTTGCTCCAGCCTCA+AGG | - | chr3.2:3348248-3348267 | None:intergenic | 50.0% |
| !! | GAAGAAGTTGGGACTAGCCA+TGG | + | chr3.2:3346503-3346522 | MS.gene009458:CDS | 50.0% |
| !! | TAGAAGGTGCCGATGTGGTT+AGG | + | chr3.2:3346749-3346768 | MS.gene009458:intron | 50.0% |
| AACAAGCCCTCCCTAGAAGG+AGG | - | chr3.2:3348104-3348123 | None:intergenic | 55.0% | |
| ACATCCTCGAACGCAACTCC+CGG | + | chr3.2:3345189-3345208 | MS.gene009458:CDS | 55.0% | |
| ACCAGTCCCAGGTGGAAAAC+CGG | - | chr3.2:3345223-3345242 | None:intergenic | 55.0% | |
| ACTGTCCGAGTTCACTGTGG+TGG | - | chr3.2:3347901-3347920 | None:intergenic | 55.0% | |
| AGAAGCAGCTGCATCTCCAG+AGG | - | chr3.2:3346541-3346560 | None:intergenic | 55.0% | |
| AGAGGTTGGAGGAATGCCCA+TGG | - | chr3.2:3346523-3346542 | None:intergenic | 55.0% | |
| ATGGGCATTCCTCCAACCTC+TGG | + | chr3.2:3346522-3346541 | MS.gene009458:CDS | 55.0% | |
| ATGTTGGACACCACGCCTGT+CGG | + | chr3.2:3344811-3344830 | MS.gene009458:intron | 55.0% | |
| GCGGTCCTGCTGTAATGATG+AGG | + | chr3.2:3346346-3346365 | MS.gene009458:CDS | 55.0% | |
| TCAGAGGTCTTCACACCCGT+CGG | + | chr3.2:3345535-3345554 | MS.gene009458:intron | 55.0% | |
| TGCAGCAGGTTATGGCAGGA+AGG | + | chr3.2:3348305-3348324 | MS.gene009458:CDS | 55.0% | |
| TTAGGGAGACCACCATCCTG+TGG | - | chr3.2:3346021-3346040 | None:intergenic | 55.0% | |
| TTGGCTGGAAAACCAGTCCC+AGG | - | chr3.2:3345234-3345253 | None:intergenic | 55.0% | |
| ! | TTGAAAGCTGCGCTAGCCTC+TGG | + | chr3.2:3347626-3347645 | MS.gene009458:CDS | 55.0% |
| !! | GCTAGCCTCTGGTGCTGATA+AGG | + | chr3.2:3347637-3347656 | MS.gene009458:CDS | 55.0% |
| !! | TTTGCATGGAGGAGCACCAC+AGG | + | chr3.2:3346002-3346021 | MS.gene009458:CDS | 55.0% |
| ATGACCATGGCTGAGCGCCT+GGG | + | chr3.2:3346099-3346118 | MS.gene009458:CDS | 60.0% | |
| ATTACCCAGGCGCTCAGCCA+TGG | - | chr3.2:3346106-3346125 | None:intergenic | 60.0% | |
| CCCTCCCTAGAAGGAGGAGA+GGG | - | chr3.2:3348098-3348117 | None:intergenic | 60.0% | |
| GAGCTTGCGCACACTTCACC+TGG | - | chr3.2:3348224-3348243 | None:intergenic | 60.0% | |
| GCAGCTGCATCTCCAGAGGT+TGG | - | chr3.2:3346537-3346556 | None:intergenic | 60.0% | |
| GCTGCATCTCCAGAGGTTGG+AGG | - | chr3.2:3346534-3346553 | None:intergenic | 60.0% | |
| GCTGGAAAACCAGTCCCAGG+TGG | - | chr3.2:3345231-3345250 | None:intergenic | 60.0% | |
| GTGTGCGCAAGCTCTCCTTG+AGG | + | chr3.2:3348230-3348249 | MS.gene009458:CDS | 60.0% | |
| TATGACCATGGCTGAGCGCC+TGG | + | chr3.2:3346098-3346117 | MS.gene009458:CDS | 60.0% | |
| TGGAAAACCGGTCCCAGGTC+CGG | - | chr3.2:3345211-3345230 | None:intergenic | 60.0% | |
| ! | CCCTCTCCTCCTTCTAGGGA+GGG | + | chr3.2:3348095-3348114 | MS.gene009458:intron | 60.0% |
| !! | ACCGGTTTTCCACCTGGGAC+TGG | + | chr3.2:3345219-3345238 | MS.gene009458:CDS | 60.0% |
| !! | CATGGAGGAGCACCACAGGA+TGG | + | chr3.2:3346006-3346025 | MS.gene009458:CDS | 60.0% |
| !! | CTGGGACCGGTTTTCCACCT+GGG | + | chr3.2:3345214-3345233 | MS.gene009458:CDS | 60.0% |
| AGGTCCGGGAGTTGCGTTCG+AGG | - | chr3.2:3345196-3345215 | None:intergenic | 65.0% | |
| CCAGGTGGAAAACCGGTCCC+AGG | - | chr3.2:3345216-3345235 | None:intergenic | 65.0% | |
| CGAACGCAACTCCCGGACCT+GGG | + | chr3.2:3345196-3345215 | MS.gene009458:CDS | 65.0% | |
| GCCCTCCCTAGAAGGAGGAG+AGG | - | chr3.2:3348099-3348118 | None:intergenic | 65.0% | |
| GCGCAAGCTCTCCTTGAGGC+TGG | + | chr3.2:3348234-3348253 | MS.gene009458:CDS | 65.0% | |
| GGAAAACCGGTCCCAGGTCC+GGG | - | chr3.2:3345210-3345229 | None:intergenic | 65.0% | |
| TCGAACGCAACTCCCGGACC+TGG | + | chr3.2:3345195-3345214 | MS.gene009458:CDS | 65.0% | |
| ! | GCCCTCTCCTCCTTCTAGGG+AGG | + | chr3.2:3348094-3348113 | MS.gene009458:intron | 65.0% |
| !! | CCTGGGACCGGTTTTCCACC+TGG | + | chr3.2:3345213-3345232 | MS.gene009458:CDS | 65.0% |
| !! | GGAGGAGCACCACAGGATGG+TGG | + | chr3.2:3346009-3346028 | MS.gene009458:CDS | 65.0% |
| GCAACTCCCGGACCTGGGAC+CGG | + | chr3.2:3345201-3345220 | MS.gene009458:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 3344389 | 3348599 | 3344389 | ID=MS.gene009458 |
| chr3.2 | mRNA | 3344389 | 3348599 | 3344389 | ID=MS.gene009458.t1;Parent=MS.gene009458 |
| chr3.2 | exon | 3344389 | 3344422 | 3344389 | ID=MS.gene009458.t1.exon1;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3344389 | 3344422 | 3344389 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3345145 | 3345290 | 3345145 | ID=MS.gene009458.t1.exon2;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3345145 | 3345290 | 3345145 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3345922 | 3346137 | 3345922 | ID=MS.gene009458.t1.exon3;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3345922 | 3346137 | 3345922 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3346219 | 3346367 | 3346219 | ID=MS.gene009458.t1.exon4;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3346219 | 3346367 | 3346219 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3346479 | 3346650 | 3346479 | ID=MS.gene009458.t1.exon5;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3346479 | 3346650 | 3346479 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3347623 | 3347715 | 3347623 | ID=MS.gene009458.t1.exon6;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3347623 | 3347715 | 3347623 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3348225 | 3348364 | 3348225 | ID=MS.gene009458.t1.exon7;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3348225 | 3348364 | 3348225 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| chr3.2 | exon | 3348500 | 3348599 | 3348500 | ID=MS.gene009458.t1.exon8;Parent=MS.gene009458.t1 |
| chr3.2 | CDS | 3348500 | 3348599 | 3348500 | ID=cds.MS.gene009458.t1;Parent=MS.gene009458.t1 |
| Gene Sequence |
| Protein sequence |
