Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006392.t1 | XP_013469740.1 | 99.5 | 212 | 1 | 0 | 1 | 212 | 2 | 213 | 1.30E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006392.t1 | Q9LIL4 | 80.4 | 214 | 40 | 2 | 1 | 212 | 1 | 214 | 1.1e-94 | 347.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006392.t1 | A0A072VQS5 | 99.5 | 212 | 1 | 0 | 1 | 212 | 2 | 213 | 9.5e-116 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006392 | MS.gene96773 | PPI |
| MS.gene006392 | MS.gene006810 | PPI |
| MS.gene006392 | MS.gene031477 | PPI |
| MS.gene006392 | MS.gene56516 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006392.t1 | MTR_1g102720 | 99.528 | 212 | 1 | 0 | 1 | 212 | 2 | 213 | 1.51e-160 | 442 |
| MS.gene006392.t1 | MTR_7g095690 | 71.292 | 209 | 55 | 2 | 9 | 212 | 3 | 211 | 2.32e-109 | 312 |
| MS.gene006392.t1 | MTR_5g098250 | 36.150 | 213 | 128 | 1 | 8 | 212 | 1 | 213 | 1.08e-39 | 135 |
| MS.gene006392.t1 | MTR_5g098250 | 36.150 | 213 | 128 | 1 | 8 | 212 | 2 | 214 | 1.14e-39 | 135 |
| MS.gene006392.t1 | MTR_3g060210 | 32.178 | 202 | 132 | 2 | 8 | 208 | 12 | 209 | 2.77e-32 | 116 |
| MS.gene006392.t1 | MTR_3g072600 | 27.778 | 144 | 101 | 2 | 65 | 205 | 70 | 213 | 2.54e-14 | 69.3 |
| MS.gene006392.t1 | MTR_8g088940 | 28.082 | 146 | 100 | 2 | 65 | 205 | 62 | 207 | 1.44e-12 | 64.3 |
| MS.gene006392.t1 | MTR_8g088980 | 28.571 | 140 | 95 | 2 | 71 | 205 | 19 | 158 | 3.45e-12 | 62.4 |
| MS.gene006392.t1 | MTR_2g007210 | 23.913 | 184 | 132 | 4 | 26 | 205 | 23 | 202 | 1.89e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006392.t1 | AT3G22845 | 80.374 | 214 | 40 | 2 | 1 | 212 | 1 | 214 | 5.42e-129 | 362 |
| MS.gene006392.t1 | AT3G22845 | 76.866 | 134 | 29 | 2 | 1 | 132 | 1 | 134 | 1.22e-71 | 216 |
| MS.gene006392.t1 | AT3G07680 | 32.512 | 203 | 136 | 1 | 10 | 212 | 7 | 208 | 6.99e-33 | 118 |
| MS.gene006392.t1 | AT1G57620 | 25.701 | 214 | 144 | 6 | 1 | 205 | 1 | 208 | 4.73e-16 | 73.9 |
| MS.gene006392.t1 | AT1G09580 | 27.941 | 204 | 132 | 4 | 10 | 205 | 17 | 213 | 1.58e-15 | 72.8 |
| MS.gene006392.t1 | AT1G21900 | 23.116 | 199 | 142 | 4 | 15 | 205 | 17 | 212 | 6.57e-12 | 62.8 |
Find 49 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGACAAATTTCAATTTA+AGG | 0.133646 | 1.3:-70522417 | MS.gene006392:CDS |
| TACGAAGGGGATACCGTTTC+GGG | 0.172344 | 1.3:-70523626 | MS.gene006392:CDS |
| ATGTAGAACATTACCATCTT+TGG | 0.275165 | 1.3:+70522286 | None:intergenic |
| ACAGTCTCAGGTGTTGAGTA+TGG | 0.308256 | 1.3:+70522356 | None:intergenic |
| AATTTATACATTCCGTGTAC+TGG | 0.328863 | 1.3:+70522392 | None:intergenic |
| CAGATGTCCCCTTGATATCT+TGG | 0.337037 | 1.3:+70522438 | None:intergenic |
| TTGATGGTTTGCAGAGCATT+TGG | 0.346873 | 1.3:-70522101 | MS.gene006392:intron |
| TTACGAAGGGGATACCGTTT+CGG | 0.363134 | 1.3:-70523627 | MS.gene006392:CDS |
| CAAGATATCAAGGGGACATC+TGG | 0.368468 | 1.3:-70522437 | MS.gene006392:CDS |
| CGTGTTATCTTCTACACTGT+TGG | 0.459757 | 1.3:-70521782 | MS.gene006392:CDS |
| TGCCGAGCTTAGAGAGGCAT+TGG | 0.460939 | 1.3:-70522059 | MS.gene006392:CDS |
| ATTTATACATTCCGTGTACT+GGG | 0.462322 | 1.3:+70522393 | None:intergenic |
| TATCTGCAGGTAACATCTCC+TGG | 0.475966 | 1.3:-70522473 | MS.gene006392:intron |
| TCACCCTGGCATTGATTTCA+CGG | 0.481893 | 1.3:-70523561 | MS.gene006392:intron |
| CACTGCAAGTCATATACATC+AGG | 0.486124 | 1.3:-70521730 | MS.gene006392:CDS |
| GTTTCTTTCTATATCCATGT+TGG | 0.488157 | 1.3:-70522335 | MS.gene006392:CDS |
| TAATGTTGTCCAAGATATCA+AGG | 0.494624 | 1.3:-70522447 | MS.gene006392:CDS |
| GAAATCAATGCCAGGGTGAT+CGG | 0.508098 | 1.3:+70523565 | None:intergenic |
| ATGCCACTGACTTGCTGAAA+AGG | 0.511254 | 1.3:+70521705 | None:intergenic |
| CAATTTAAGGCCCCAGTACA+CGG | 0.513678 | 1.3:-70522404 | MS.gene006392:CDS |
| GAGCATGACCTTGCCAAAGA+TGG | 0.530671 | 1.3:-70522299 | MS.gene006392:intron |
| CAGTCTCAGGTGTTGAGTAT+GGG | 0.543923 | 1.3:+70522357 | None:intergenic |
| TTCCAATGCCTCTCTAAGCT+CGG | 0.548991 | 1.3:+70522057 | None:intergenic |
| CGGAACTCCAGAAAATATCA+TGG | 0.549085 | 1.3:+70523585 | None:intergenic |
| ATATAGAAAGAAACAGTCTC+AGG | 0.562956 | 1.3:+70522344 | None:intergenic |
| ATGAGTATGTGCTTTACGAA+GGG | 0.567800 | 1.3:-70523640 | MS.gene006392:CDS |
| TTGGCAAGGTCATGCTCAGA+GGG | 0.569730 | 1.3:+70522305 | None:intergenic |
| AAAAGAGAAACGCGAAGATG+TGG | 0.573730 | 1.3:-70523745 | MS.gene006392:CDS |
| GACAACAAAATTCCCCGAAA+CGG | 0.580687 | 1.3:+70523613 | None:intergenic |
| CTTACCGTGAAATCAATGCC+AGG | 0.583610 | 1.3:+70523557 | None:intergenic |
| CACTAACAGCAGCCAACAGA+AGG | 0.587296 | 1.3:+70521753 | None:intergenic |
| TGTTGGAGAGTACCTTCTGT+TGG | 0.587408 | 1.3:-70521765 | MS.gene006392:CDS |
| TCTTGGACAACATTACCTCC+AGG | 0.591309 | 1.3:+70522455 | None:intergenic |
| TATGAGTATGTGCTTTACGA+AGG | 0.595805 | 1.3:-70523641 | MS.gene006392:CDS |
| GAACATTACCATCTTTGGCA+AGG | 0.600928 | 1.3:+70522291 | None:intergenic |
| CAGAGGGAATATGACCAACA+TGG | 0.605526 | 1.3:+70522321 | None:intergenic |
| AATGTTGTCCAAGATATCAA+GGG | 0.609554 | 1.3:-70522446 | MS.gene006392:CDS |
| ACTTGAGAGCTCGAGATGCA+AGG | 0.627861 | 1.3:-70522012 | MS.gene006392:CDS |
| GAGAAACGCGAAGATGTGGA+TGG | 0.628470 | 1.3:-70523741 | MS.gene006392:CDS |
| TAAAATTGCCGAGCTTAGAG+AGG | 0.633131 | 1.3:-70522065 | MS.gene006392:CDS |
| TTCTGGAGTTCCGATCACCC+TGG | 0.637663 | 1.3:-70523575 | MS.gene006392:CDS |
| TGAGTATGTGCTTTACGAAG+GGG | 0.643837 | 1.3:-70523639 | MS.gene006392:CDS |
| TTTATACATTCCGTGTACTG+GGG | 0.658699 | 1.3:+70522394 | None:intergenic |
| TTACCGTGAAATCAATGCCA+GGG | 0.659563 | 1.3:+70523558 | None:intergenic |
| TTTGGCAAGGTCATGCTCAG+AGG | 0.659698 | 1.3:+70522304 | None:intergenic |
| ATGTTGTCCAAGATATCAAG+GGG | 0.664498 | 1.3:-70522445 | MS.gene006392:CDS |
| TGATGGAGGGGACTCAAACA+CGG | 0.671358 | 1.3:+70521678 | None:intergenic |
| ACGAAGGGGATACCGTTTCG+GGG | 0.686401 | 1.3:-70523625 | MS.gene006392:CDS |
| CTGCAGGTAACATCTCCTGG+AGG | 0.743481 | 1.3:-70522470 | MS.gene006392:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAATATGAAAATTT+GGG | + | chr1.3:70522912-70522931 | None:intergenic | 10.0% |
| !! | ATTATGATTTATGAAATTAT+TGG | - | chr1.3:70522004-70522023 | MS.gene006392:CDS | 10.0% |
| !! | TAAAAAACAATATGAAAATT+TGG | + | chr1.3:70522913-70522932 | None:intergenic | 10.0% |
| !! | TTATGATTTATGAAATTATT+GGG | - | chr1.3:70522005-70522024 | MS.gene006392:CDS | 10.0% |
| !! | ATCAAAATAATAACAAATGA+TGG | + | chr1.3:70522844-70522863 | None:intergenic | 15.0% |
| !! | TATGATTTATGAAATTATTG+GGG | - | chr1.3:70522006-70522025 | MS.gene006392:CDS | 15.0% |
| !!! | TATTTTATGTTCTTATGTTT+TGG | - | chr1.3:70523293-70523312 | MS.gene006392:intron | 15.0% |
| !! | AATTCAACAAATTATGAACT+GGG | + | chr1.3:70521987-70522006 | None:intergenic | 20.0% |
| !! | AATTGATATAATGTAGCTTA+AGG | + | chr1.3:70522279-70522298 | None:intergenic | 20.0% |
| !! | TAATTCAACAAATTATGAAC+TGG | + | chr1.3:70521988-70522007 | None:intergenic | 20.0% |
| !! | TGAATATAGAATTGAAGTTT+AGG | - | chr1.3:70522160-70522179 | MS.gene006392:intron | 20.0% |
| !! | TTGTGAACATATATGATATA+TGG | - | chr1.3:70523536-70523555 | MS.gene006392:intron | 20.0% |
| !!! | GGAAAAAATGGTTTTTTTTA+GGG | - | chr1.3:70522052-70522071 | MS.gene006392:CDS | 20.0% |
| ! | AACACTTCAACAAATGAATA+CGG | + | chr1.3:70523217-70523236 | None:intergenic | 25.0% |
| ! | ACTTTGTATGATTTGATGAA+TGG | - | chr1.3:70522336-70522355 | MS.gene006392:CDS | 25.0% |
| ! | AGTAAGTACGAATAAAAGAA+GGG | + | chr1.3:70523598-70523617 | None:intergenic | 25.0% |
| ! | ATATATGATTCAAAGCTACA+TGG | + | chr1.3:70522126-70522145 | None:intergenic | 25.0% |
| ! | ATCAAAATTGCACAGAAAAA+GGG | + | chr1.3:70521930-70521949 | None:intergenic | 25.0% |
| ! | ATGATTTGATGAATGGTTAT+TGG | - | chr1.3:70522343-70522362 | MS.gene006392:CDS | 25.0% |
| ! | ATTCATCAAATCATACAAAG+TGG | + | chr1.3:70522337-70522356 | None:intergenic | 25.0% |
| ! | GCTAGCTAGTATTATATTAT+AGG | - | chr1.3:70522804-70522823 | MS.gene006392:intron | 25.0% |
| ! | GTTTACAATAATGTTACAGA+AGG | + | chr1.3:70522385-70522404 | None:intergenic | 25.0% |
| ! | TATCAAAATTGCACAGAAAA+AGG | + | chr1.3:70521931-70521950 | None:intergenic | 25.0% |
| ! | TGGAGACAAATTTCAATTTA+AGG | - | chr1.3:70523023-70523042 | MS.gene006392:intron | 25.0% |
| !! | CTACTTTGAAAATTCAATTG+TGG | - | chr1.3:70523496-70523515 | MS.gene006392:intron | 25.0% |
| !!! | AAGTTTTTGTTTATGCCTAT+AGG | - | chr1.3:70522192-70522211 | MS.gene006392:intron | 25.0% |
| !!! | CGGCAATTTTAACATTAATT+GGG | + | chr1.3:70523366-70523385 | None:intergenic | 25.0% |
| !!! | GGGAAAAAATGGTTTTTTTT+AGG | - | chr1.3:70522051-70522070 | MS.gene006392:CDS | 25.0% |
| !!! | TCGGCAATTTTAACATTAAT+TGG | + | chr1.3:70523367-70523386 | None:intergenic | 25.0% |
| !!! | TTTTTTTAGGGTGTTTAAGA+GGG | - | chr1.3:70522064-70522083 | MS.gene006392:CDS | 25.0% |
| !!! | TTTTTTTTAGGGTGTTTAAG+AGG | - | chr1.3:70522063-70522082 | MS.gene006392:CDS | 25.0% |
| AATGTTGTCCAAGATATCAA+GGG | - | chr1.3:70522994-70523013 | MS.gene006392:intron | 30.0% | |
| AATTTATACATTCCGTGTAC+TGG | + | chr1.3:70523051-70523070 | None:intergenic | 30.0% | |
| AGTAGAACAATGAAAGTTGA+TGG | + | chr1.3:70523481-70523500 | None:intergenic | 30.0% | |
| ATATAGAAAGAAACAGTCTC+AGG | + | chr1.3:70523099-70523118 | None:intergenic | 30.0% | |
| ATGTAGAACATTACCATCTT+TGG | + | chr1.3:70523157-70523176 | None:intergenic | 30.0% | |
| ATTTATACATTCCGTGTACT+GGG | + | chr1.3:70523050-70523069 | None:intergenic | 30.0% | |
| CCTATTTAACACTTCTTACA+TGG | - | chr1.3:70522239-70522258 | MS.gene006392:intron | 30.0% | |
| CTAAAAATACATGATGTCCT+TGG | + | chr1.3:70522615-70522634 | None:intergenic | 30.0% | |
| GAAAAGAAAACTACTTACTG+TGG | + | chr1.3:70523459-70523478 | None:intergenic | 30.0% | |
| GAGTAAGTACGAATAAAAGA+AGG | + | chr1.3:70523599-70523618 | None:intergenic | 30.0% | |
| GATCTTTGTTAGTGCATAAT+AGG | - | chr1.3:70522455-70522474 | MS.gene006392:CDS | 30.0% | |
| GCTTGAGAATAAATCCATTT+AGG | + | chr1.3:70522696-70522715 | None:intergenic | 30.0% | |
| GTTTCTTTCTATATCCATGT+TGG | - | chr1.3:70523105-70523124 | MS.gene006392:intron | 30.0% | |
| TAATGTTGTCCAAGATATCA+AGG | - | chr1.3:70522993-70523012 | MS.gene006392:intron | 30.0% | |
| TATTGCTTACTAATCAGACT+CGG | - | chr1.3:70522872-70522891 | MS.gene006392:intron | 30.0% | |
| ! | AATAAAAGAAGGGTACAGAT+AGG | + | chr1.3:70523588-70523607 | None:intergenic | 30.0% |
| ! | ACATTTCTTTTTCCCCATTT+CGG | - | chr1.3:70523561-70523580 | MS.gene006392:intron | 30.0% |
| ! | CTTTTGTATATAGCAAACTG+CGG | - | chr1.3:70522723-70522742 | MS.gene006392:intron | 30.0% |
| ! | GTTAAATAGGCAACTCTTTT+TGG | + | chr1.3:70522229-70522248 | None:intergenic | 30.0% |
| ! | TTGGTCTTTAGTTTACCTAT+AGG | + | chr1.3:70522210-70522229 | None:intergenic | 30.0% |
| ! | TTTGTATTTTGCTTTGGTGA+GGG | - | chr1.3:70522031-70522050 | MS.gene006392:CDS | 30.0% |
| !! | CCATGTAAGAAGTGTTAAAT+AGG | + | chr1.3:70522242-70522261 | None:intergenic | 30.0% |
| !!! | CTTTATTTTGTGCACCTAAA+TGG | - | chr1.3:70522679-70522698 | MS.gene006392:intron | 30.0% |
| !!! | GTTCTTATGTTTTGGTTATC+TGG | - | chr1.3:70523301-70523320 | MS.gene006392:intron | 30.0% |
| AACAAATTATGAACTGGGCA+AGG | + | chr1.3:70521982-70522001 | None:intergenic | 35.0% | |
| AACAATATAGTCAAGCCTCA+AGG | + | chr1.3:70522764-70522783 | None:intergenic | 35.0% | |
| AATGGTTATTGGTGAATCCT+TGG | - | chr1.3:70522354-70522373 | MS.gene006392:CDS | 35.0% | |
| AATTGAAGTTTAGGTGTCCA+AGG | - | chr1.3:70522169-70522188 | MS.gene006392:intron | 35.0% | |
| ATGAGTATGTGCTTTACGAA+GGG | - | chr1.3:70521800-70521819 | MS.gene006392:CDS | 35.0% | |
| ATGTTGTCCAAGATATCAAG+GGG | - | chr1.3:70522995-70523014 | MS.gene006392:intron | 35.0% | |
| CATTTCTGATGAATGATCTG+AGG | - | chr1.3:70523268-70523287 | MS.gene006392:intron | 35.0% | |
| GAAATGTCAAGAAGTAAGTC+AGG | + | chr1.3:70523254-70523273 | None:intergenic | 35.0% | |
| GAGGTAAAAGATAAACACCA+AGG | - | chr1.3:70522595-70522614 | MS.gene006392:intron | 35.0% | |
| GCAAACCATCAAGGTTTAAA+CGG | + | chr1.3:70523331-70523350 | None:intergenic | 35.0% | |
| GGCATAAACAAAAACTTCCT+TGG | + | chr1.3:70522189-70522208 | None:intergenic | 35.0% | |
| GTAATGTTCTACATGAAAGC+AGG | - | chr1.3:70523163-70523182 | MS.gene006392:intron | 35.0% | |
| TATGAGTATGTGCTTTACGA+AGG | - | chr1.3:70521799-70521818 | MS.gene006392:CDS | 35.0% | |
| TCAATTCGATCAATCCATGT+TGG | - | chr1.3:70522484-70522503 | MS.gene006392:intron | 35.0% | |
| TGATGACTGAAGATAGTTGT+AGG | - | chr1.3:70522562-70522581 | MS.gene006392:intron | 35.0% | |
| TGCAGATAACTGCGAAAATT+AGG | + | chr1.3:70522955-70522974 | None:intergenic | 35.0% | |
| TTTATACATTCCGTGTACTG+GGG | + | chr1.3:70523049-70523068 | None:intergenic | 35.0% | |
| ! | GTTTGTATTTTGCTTTGGTG+AGG | - | chr1.3:70522030-70522049 | MS.gene006392:CDS | 35.0% |
| ! | TAATTTTCGCAGTTATCTGC+AGG | - | chr1.3:70522954-70522973 | MS.gene006392:intron | 35.0% |
| ! | TCGTTGACCATGATATTTTC+TGG | - | chr1.3:70521848-70521867 | MS.gene006392:intron | 35.0% |
| !!! | ACAAGTGCTGATGTTCATTT+TGG | + | chr1.3:70522430-70522449 | None:intergenic | 35.0% |
| AAAAGAGAAACGCGAAGATG+TGG | - | chr1.3:70521695-70521714 | MS.gene006392:CDS | 40.0% | |
| AAATGCTCTGCAAACCATCA+AGG | + | chr1.3:70523340-70523359 | None:intergenic | 40.0% | |
| AATATCAGCACCAGTCAGAT+GGG | + | chr1.3:70522647-70522666 | None:intergenic | 40.0% | |
| ACCATCAAGGTTTAAACGGA+AGG | + | chr1.3:70523327-70523346 | None:intergenic | 40.0% | |
| AGTTGTAGGTAGGAATAGTG+AGG | - | chr1.3:70522576-70522595 | MS.gene006392:intron | 40.0% | |
| CACTGCAAGTCATATACATC+AGG | - | chr1.3:70523710-70523729 | MS.gene006392:CDS | 40.0% | |
| CGGAACTCCAGAAAATATCA+TGG | + | chr1.3:70521858-70521877 | None:intergenic | 40.0% | |
| CGTGTTATCTTCTACACTGT+TGG | - | chr1.3:70523658-70523677 | MS.gene006392:CDS | 40.0% | |
| CTTGAGACATAGATACCTTG+AGG | - | chr1.3:70522746-70522765 | MS.gene006392:intron | 40.0% | |
| GAACATTACCATCTTTGGCA+AGG | + | chr1.3:70523152-70523171 | None:intergenic | 40.0% | |
| GACAACAAAATTCCCCGAAA+CGG | + | chr1.3:70521830-70521849 | None:intergenic | 40.0% | |
| GACTGAAGATAGTTGTAGGT+AGG | - | chr1.3:70522566-70522585 | MS.gene006392:intron | 40.0% | |
| TAAAATTGCCGAGCTTAGAG+AGG | - | chr1.3:70523375-70523394 | MS.gene006392:intron | 40.0% | |
| TGAGTATGTGCTTTACGAAG+GGG | - | chr1.3:70521801-70521820 | MS.gene006392:CDS | 40.0% | |
| TGCACAGAAAAAGGGAATTG+TGG | + | chr1.3:70521922-70521941 | None:intergenic | 40.0% | |
| TGCTTTGGTGAGGGAAAAAA+TGG | - | chr1.3:70522040-70522059 | MS.gene006392:CDS | 40.0% | |
| TTACCGTGAAATCAATGCCA+GGG | + | chr1.3:70521885-70521904 | None:intergenic | 40.0% | |
| ! | GTATTTTATGCCCATCTGAC+TGG | - | chr1.3:70522634-70522653 | MS.gene006392:intron | 40.0% |
| ! | TTGATGGTTTGCAGAGCATT+TGG | - | chr1.3:70523339-70523358 | MS.gene006392:intron | 40.0% |
| !! | GACTGGTGCTGATATTGAAA+TGG | - | chr1.3:70522651-70522670 | MS.gene006392:intron | 40.0% |
| !! | GGGGTGTTTGTATTTTGCTT+TGG | - | chr1.3:70522025-70522044 | MS.gene006392:CDS | 40.0% |
| !!! | GTGGATGGTTTTGATGTGTT+TGG | - | chr1.3:70521714-70521733 | MS.gene006392:CDS | 40.0% |
| ACAAACACGCTGATCCAACA+TGG | + | chr1.3:70522501-70522520 | None:intergenic | 45.0% | |
| CAAGATATCAAGGGGACATC+TGG | - | chr1.3:70523003-70523022 | MS.gene006392:intron | 45.0% | |
| CAATATCAGCACCAGTCAGA+TGG | + | chr1.3:70522648-70522667 | None:intergenic | 45.0% | |
| CAGAGGGAATATGACCAACA+TGG | + | chr1.3:70523122-70523141 | None:intergenic | 45.0% | |
| CAGATGTCCCCTTGATATCT+TGG | + | chr1.3:70523005-70523024 | None:intergenic | 45.0% | |
| CTTACCGTGAAATCAATGCC+AGG | + | chr1.3:70521886-70521905 | None:intergenic | 45.0% | |
| GAAATCAATGCCAGGGTGAT+CGG | + | chr1.3:70521878-70521897 | None:intergenic | 45.0% | |
| GCCTTCCGTTTAAACCTTGA+TGG | - | chr1.3:70523323-70523342 | MS.gene006392:intron | 45.0% | |
| GGTACAGATAGGACCGAAAT+GGG | + | chr1.3:70523577-70523596 | None:intergenic | 45.0% | |
| GTACAGATAGGACCGAAATG+GGG | + | chr1.3:70523576-70523595 | None:intergenic | 45.0% | |
| TATCTGCAGGTAACATCTCC+TGG | - | chr1.3:70522967-70522986 | MS.gene006392:intron | 45.0% | |
| TCTTGGACAACATTACCTCC+AGG | + | chr1.3:70522988-70523007 | None:intergenic | 45.0% | |
| TTACGAAGGGGATACCGTTT+CGG | - | chr1.3:70521813-70521832 | MS.gene006392:intron | 45.0% | |
| TTCCAATGCCTCTCTAAGCT+CGG | + | chr1.3:70523386-70523405 | None:intergenic | 45.0% | |
| ! | CAATTTAAGGCCCCAGTACA+CGG | - | chr1.3:70523036-70523055 | MS.gene006392:intron | 45.0% |
| !! | ACAGTCTCAGGTGTTGAGTA+TGG | + | chr1.3:70523087-70523106 | None:intergenic | 45.0% |
| !! | ATGCCACTGACTTGCTGAAA+AGG | + | chr1.3:70523738-70523757 | None:intergenic | 45.0% |
| !! | CAGTCTCAGGTGTTGAGTAT+GGG | + | chr1.3:70523086-70523105 | None:intergenic | 45.0% |
| !! | TCACCCTGGCATTGATTTCA+CGG | - | chr1.3:70521879-70521898 | MS.gene006392:intron | 45.0% |
| !! | TGTTACAGAAGGTACTGCCA+AGG | + | chr1.3:70522374-70522393 | None:intergenic | 45.0% |
| !! | TGTTGGAGAGTACCTTCTGT+TGG | - | chr1.3:70523675-70523694 | MS.gene006392:CDS | 45.0% |
| ACTTGAGAGCTCGAGATGCA+AGG | - | chr1.3:70523428-70523447 | MS.gene006392:intron | 50.0% | |
| CACTAACAGCAGCCAACAGA+AGG | + | chr1.3:70523690-70523709 | None:intergenic | 50.0% | |
| GAGAAACGCGAAGATGTGGA+TGG | - | chr1.3:70521699-70521718 | MS.gene006392:CDS | 50.0% | |
| GAGCATGACCTTGCCAAAGA+TGG | - | chr1.3:70523141-70523160 | MS.gene006392:intron | 50.0% | |
| GGGTACAGATAGGACCGAAA+TGG | + | chr1.3:70523578-70523597 | None:intergenic | 50.0% | |
| TACGAAGGGGATACCGTTTC+GGG | - | chr1.3:70521814-70521833 | MS.gene006392:intron | 50.0% | |
| TTGGCAAGGTCATGCTCAGA+GGG | + | chr1.3:70523138-70523157 | None:intergenic | 50.0% | |
| TTTGGCAAGGTCATGCTCAG+AGG | + | chr1.3:70523139-70523158 | None:intergenic | 50.0% | |
| ACGAAGGGGATACCGTTTCG+GGG | - | chr1.3:70521815-70521834 | MS.gene006392:intron | 55.0% | |
| CTGCAGGTAACATCTCCTGG+AGG | - | chr1.3:70522970-70522989 | MS.gene006392:intron | 55.0% | |
| ! | GCGCCTTTTCAGCAAGTCAG+TGG | - | chr1.3:70523732-70523751 | MS.gene006392:CDS | 55.0% |
| ! | TGCCGAGCTTAGAGAGGCAT+TGG | - | chr1.3:70523381-70523400 | MS.gene006392:intron | 55.0% |
| !! | TTCTGGAGTTCCGATCACCC+TGG | - | chr1.3:70521865-70521884 | MS.gene006392:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 70521691 | 70523771 | 70521691 | ID=MS.gene006392 |
| chr1.3 | mRNA | 70521691 | 70523771 | 70521691 | ID=MS.gene006392.t1;Parent=MS.gene006392 |
| chr1.3 | exon | 70523562 | 70523771 | 70523562 | ID=MS.gene006392.t1.exon1;Parent=MS.gene006392.t1 |
| chr1.3 | CDS | 70523562 | 70523771 | 70523562 | ID=cds.MS.gene006392.t1;Parent=MS.gene006392.t1 |
| chr1.3 | exon | 70522300 | 70522486 | 70522300 | ID=MS.gene006392.t1.exon2;Parent=MS.gene006392.t1 |
| chr1.3 | CDS | 70522300 | 70522486 | 70522300 | ID=cds.MS.gene006392.t1;Parent=MS.gene006392.t1 |
| chr1.3 | exon | 70522002 | 70522109 | 70522002 | ID=MS.gene006392.t1.exon3;Parent=MS.gene006392.t1 |
| chr1.3 | CDS | 70522002 | 70522109 | 70522002 | ID=cds.MS.gene006392.t1;Parent=MS.gene006392.t1 |
| chr1.3 | exon | 70521691 | 70521824 | 70521691 | ID=MS.gene006392.t1.exon4;Parent=MS.gene006392.t1 |
| chr1.3 | CDS | 70521691 | 70521824 | 70521691 | ID=cds.MS.gene006392.t1;Parent=MS.gene006392.t1 |
| Gene Sequence |
| Protein sequence |
