Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031477.t1 | XP_013456763.1 | 96.8 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 4.80E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031477.t1 | Q9LQY3 | 65.5 | 203 | 70 | 0 | 14 | 216 | 12 | 214 | 2.9e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031477.t1 | I3T547 | 96.8 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 3.5e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031477 | MS.gene56516 | PPI |
| MS.gene047149 | MS.gene031477 | PPI |
| MS.gene070963 | MS.gene031477 | PPI |
| MS.gene031477 | MS.gene96773 | PPI |
| MS.gene031477 | MS.gene67216 | PPI |
| MS.gene34399 | MS.gene031477 | PPI |
| MS.gene006810 | MS.gene031477 | PPI |
| MS.gene002097 | MS.gene031477 | PPI |
| MS.gene031477 | MS.gene030925 | PPI |
| MS.gene27948 | MS.gene031477 | PPI |
| MS.gene37690 | MS.gene031477 | PPI |
| MS.gene006392 | MS.gene031477 | PPI |
| MS.gene47907 | MS.gene031477 | PPI |
| MS.gene031477 | MS.gene072012 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031477.t1 | MTR_4g082315 | 96.759 | 216 | 7 | 0 | 1 | 216 | 1 | 216 | 2.08e-158 | 437 |
| MS.gene031477.t1 | MTR_7g011490 | 62.679 | 209 | 73 | 1 | 13 | 216 | 4 | 212 | 2.84e-98 | 285 |
| MS.gene031477.t1 | MTR_6g012770 | 64.583 | 192 | 67 | 1 | 26 | 216 | 21 | 212 | 2.05e-96 | 280 |
| MS.gene031477.t1 | MTR_5g042260 | 53.182 | 220 | 98 | 4 | 1 | 216 | 1 | 219 | 2.60e-84 | 249 |
| MS.gene031477.t1 | MTR_5g042320 | 51.802 | 222 | 100 | 5 | 1 | 216 | 3 | 223 | 1.35e-74 | 225 |
| MS.gene031477.t1 | MTR_5g042270 | 48.168 | 191 | 92 | 2 | 27 | 216 | 1 | 185 | 8.27e-61 | 188 |
| MS.gene031477.t1 | MTR_5g058140 | 44.271 | 192 | 101 | 2 | 25 | 216 | 27 | 212 | 3.02e-60 | 188 |
| MS.gene031477.t1 | MTR_2g007210 | 43.415 | 205 | 111 | 3 | 12 | 216 | 7 | 206 | 1.33e-58 | 184 |
| MS.gene031477.t1 | MTR_3g072600 | 43.333 | 210 | 110 | 4 | 12 | 216 | 12 | 217 | 3.52e-58 | 183 |
| MS.gene031477.t1 | MTR_8g088940 | 41.546 | 207 | 108 | 3 | 15 | 216 | 13 | 211 | 1.82e-53 | 171 |
| MS.gene031477.t1 | MTR_5g042320 | 50.857 | 175 | 79 | 5 | 1 | 169 | 3 | 176 | 6.22e-53 | 169 |
| MS.gene031477.t1 | MTR_8g088980 | 47.260 | 146 | 76 | 1 | 72 | 216 | 17 | 162 | 1.92e-48 | 156 |
| MS.gene031477.t1 | MTR_5g042300 | 41.803 | 122 | 57 | 1 | 95 | 216 | 41 | 148 | 8.59e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031477.t1 | AT1G26690 | 65.517 | 203 | 70 | 0 | 14 | 216 | 12 | 214 | 5.43e-103 | 296 |
| MS.gene031477.t1 | AT1G69460 | 65.025 | 203 | 71 | 0 | 14 | 216 | 12 | 214 | 3.95e-100 | 289 |
| MS.gene031477.t1 | AT1G14010 | 61.951 | 205 | 78 | 0 | 12 | 216 | 8 | 212 | 2.10e-96 | 280 |
| MS.gene031477.t1 | AT2G03290 | 63.918 | 194 | 69 | 1 | 24 | 216 | 20 | 213 | 5.39e-91 | 266 |
| MS.gene031477.t1 | AT3G29070 | 56.771 | 192 | 83 | 0 | 25 | 216 | 34 | 225 | 4.81e-80 | 239 |
| MS.gene031477.t1 | AT2G03040 | 59.864 | 147 | 58 | 1 | 24 | 169 | 20 | 166 | 1.64e-61 | 189 |
| MS.gene031477.t1 | AT1G09580 | 40.376 | 213 | 118 | 4 | 6 | 216 | 12 | 217 | 2.22e-56 | 178 |
| MS.gene031477.t1 | AT1G57620 | 39.130 | 207 | 117 | 4 | 14 | 216 | 11 | 212 | 7.29e-51 | 164 |
| MS.gene031477.t1 | AT1G21900 | 37.321 | 209 | 126 | 3 | 10 | 216 | 11 | 216 | 8.10e-50 | 161 |
| MS.gene031477.t1 | AT3G10780 | 31.481 | 216 | 138 | 3 | 8 | 216 | 5 | 217 | 5.75e-32 | 115 |
Find 44 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGATGAAGAAAGGGTTT+TGG | 0.310847 | 4.2:+27523745 | None:intergenic |
| CAGTAGCAGGGTTGCAACTA+TGG | 0.311427 | 4.2:-27520508 | MS.gene031477:CDS |
| GGTAACGTTGACTATTGATT+TGG | 0.321195 | 4.2:-27523295 | MS.gene031477:CDS |
| TTCATCTGCTTATCAGTAGC+AGG | 0.391578 | 4.2:-27520521 | MS.gene031477:CDS |
| AGAAGAGAAAGATGAAGAAA+GGG | 0.400257 | 4.2:+27523739 | None:intergenic |
| TAGAAGAGAAAGATGAAGAA+AGG | 0.400818 | 4.2:+27523738 | None:intergenic |
| GGTAAAGGGTAACCCTCGTT+GGG | 0.404929 | 4.2:+27523589 | None:intergenic |
| GATGTCTTCTGAGATGCATT+TGG | 0.409852 | 4.2:+27523654 | None:intergenic |
| CAACCAGAACATTCTGTTGT+CGG | 0.413003 | 4.2:+27520559 | None:intergenic |
| TGACCTTTCTTAGCAACATT+GGG | 0.430307 | 4.2:+27523240 | None:intergenic |
| AACGGTGATTCTGTGTGAAT+CGG | 0.435968 | 4.2:+27523567 | None:intergenic |
| AGCAACATTGGGCCAATCCT+TGG | 0.436187 | 4.2:+27523251 | None:intergenic |
| TATGGAGATCGTGTTCAATC+TGG | 0.449834 | 4.2:-27523390 | MS.gene031477:CDS |
| GCATTTGTTGCTGCAGAAGC+TGG | 0.459925 | 4.2:-27523360 | MS.gene031477:CDS |
| CATGGAAATAACTATCACTA+TGG | 0.460188 | 4.2:-27523408 | MS.gene031477:CDS |
| TTCTGTGTGAATCGGGTAAA+GGG | 0.479747 | 4.2:+27523575 | None:intergenic |
| CTGGTGTGGCAGCCAAGGAT+TGG | 0.480930 | 4.2:-27523263 | MS.gene031477:CDS |
| ACGGTGATTCTGTGTGAATC+GGG | 0.486370 | 4.2:+27523568 | None:intergenic |
| CGTTGACTATTGATTTGGAA+TGG | 0.486839 | 4.2:-27523290 | MS.gene031477:CDS |
| ATTCAGTGGAAGATGAAAAC+AGG | 0.491337 | 4.2:+27523707 | None:intergenic |
| TTCACACAGAATCACCGTTC+GGG | 0.491934 | 4.2:-27523563 | MS.gene031477:intron |
| ATTCTGTGTGAATCGGGTAA+AGG | 0.500485 | 4.2:+27523574 | None:intergenic |
| AAACCGACAACAGAATGTTC+TGG | 0.503104 | 4.2:-27520562 | MS.gene031477:CDS |
| AAAAGCAATTCCATGACTGT+TGG | 0.505073 | 4.2:-27523631 | MS.gene031477:CDS |
| GTTTAGGTTACTTCGTCTCA+TGG | 0.505101 | 4.2:-27523426 | MS.gene031477:intron |
| TTCCAGAGAGGAAGAAATGC+AGG | 0.508533 | 4.2:-27520597 | MS.gene031477:intron |
| TCAATAGTCAACGTTACCTC+AGG | 0.509448 | 4.2:+27523300 | None:intergenic |
| TTGACCTTTCTTAGCAACAT+TGG | 0.528677 | 4.2:+27523239 | None:intergenic |
| GAAGACTGGTGTGGCAGCCA+AGG | 0.530610 | 4.2:-27523268 | MS.gene031477:CDS |
| TGGCCCAATGTTGCTAAGAA+AGG | 0.532329 | 4.2:-27523243 | MS.gene031477:CDS |
| GGGTAAAGGGTAACCCTCGT+TGG | 0.534307 | 4.2:+27523588 | None:intergenic |
| AAGATTTGAGTTCAAATCTG+AGG | 0.534501 | 4.2:+27523683 | None:intergenic |
| AGATTTGAGTTCAAATCTGA+GGG | 0.538909 | 4.2:+27523684 | None:intergenic |
| ATTCACACAGAATCACCGTT+CGG | 0.542824 | 4.2:-27523564 | MS.gene031477:CDS |
| TCATCTGCTTATCAGTAGCA+GGG | 0.558169 | 4.2:-27520520 | MS.gene031477:CDS |
| ATTGATTTGGAATGGAAGAC+TGG | 0.560840 | 4.2:-27523282 | MS.gene031477:CDS |
| TTCAAATCTGAGGGATTCAG+TGG | 0.571693 | 4.2:+27523693 | None:intergenic |
| GGTGTACTTTCCAACAGTCA+TGG | 0.589902 | 4.2:+27523621 | None:intergenic |
| ACCCTCGTTGGGGTTAACGA+TGG | 0.671660 | 4.2:+27523600 | None:intergenic |
| GGCTGCTGAGAATAAACCTG+AGG | 0.681417 | 4.2:-27523316 | MS.gene031477:CDS |
| GTAAAGGGTAACCCTCGTTG+GGG | 0.688463 | 4.2:+27523590 | None:intergenic |
| CACCATCGTTAACCCCAACG+AGG | 0.704046 | 4.2:-27523602 | MS.gene031477:CDS |
| TTTGGAATGGAAGACTGGTG+TGG | 0.728474 | 4.2:-27523277 | MS.gene031477:CDS |
| ACCATCGTTAACCCCAACGA+GGG | 0.730690 | 4.2:-27523601 | MS.gene031477:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATATTTATTATATTCTA+TGG | - | chr4.2:27522935-27522954 | MS.gene031477:intron | 10.0% |
| !! | TAGTAATTTATGATATTAAT+CGG | - | chr4.2:27521769-27521788 | MS.gene031477:intron | 10.0% |
| !! | AAACAAATTAGAATTTAGTA+AGG | + | chr4.2:27522114-27522133 | None:intergenic | 15.0% |
| !! | ACATAATTCCAAAAAAATAA+AGG | - | chr4.2:27522576-27522595 | MS.gene031477:intron | 15.0% |
| !! | ATATTACAAATTTACCATTA+AGG | + | chr4.2:27522922-27522941 | None:intergenic | 15.0% |
| !! | CATAATTCCAAAAAAATAAA+GGG | - | chr4.2:27522577-27522596 | MS.gene031477:intron | 15.0% |
| !!! | AGTACATTTTTTTTAATAAC+TGG | - | chr4.2:27521178-27521197 | MS.gene031477:intron | 15.0% |
| !!! | GTACATTTTTTTTAATAACT+GGG | - | chr4.2:27521179-27521198 | MS.gene031477:intron | 15.0% |
| !!! | TATTAATTAATAGGTTGATT+AGG | - | chr4.2:27521274-27521293 | MS.gene031477:intron | 15.0% |
| !!! | TCTATAATATATTTTCAAGT+TGG | - | chr4.2:27521032-27521051 | MS.gene031477:intron | 15.0% |
| !!! | TTATTTTTTTGGAATTATGT+AGG | + | chr4.2:27522576-27522595 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTTTTCTTTTCT+GGG | - | chr4.2:27520781-27520800 | MS.gene031477:CDS | 15.0% |
| !!! | TTTGATTTTTTTTTCTTTTC+TGG | - | chr4.2:27520780-27520799 | MS.gene031477:CDS | 15.0% |
| !! | ACTAGATGTATATTAAAGTA+AGG | - | chr4.2:27521113-27521132 | MS.gene031477:intron | 20.0% |
| !! | ATCTGTGTGTATTAATTAAT+AGG | - | chr4.2:27521265-27521284 | MS.gene031477:intron | 20.0% |
| !! | CTAGATGTATATTAAAGTAA+GGG | - | chr4.2:27521114-27521133 | MS.gene031477:intron | 20.0% |
| !! | GTAGTTAAAGTAAAGTAATT+TGG | - | chr4.2:27521587-27521606 | MS.gene031477:intron | 20.0% |
| !! | TTAAAGATTTGTATCCTTAA+TGG | - | chr4.2:27522905-27522924 | MS.gene031477:intron | 20.0% |
| !!! | ATTCAACTGTTTTTGATTAA+TGG | - | chr4.2:27520746-27520765 | MS.gene031477:intron | 20.0% |
| !!! | TTCAACTGTTTTTGATTAAT+GGG | - | chr4.2:27520747-27520766 | MS.gene031477:intron | 20.0% |
| ! | AATACACTCCTTACTAAATT+TGG | - | chr4.2:27521146-27521165 | MS.gene031477:intron | 25.0% |
| ! | ACAAGCACAATTAATGAAAA+AGG | + | chr4.2:27522145-27522164 | None:intergenic | 25.0% |
| ! | AGTTATCAAAATCAAATCAG+TGG | + | chr4.2:27523082-27523101 | None:intergenic | 25.0% |
| ! | ATACACTCCTTACTAAATTT+GGG | - | chr4.2:27521147-27521166 | MS.gene031477:intron | 25.0% |
| ! | ATTAATCGGTTAGATAGATA+GGG | - | chr4.2:27521783-27521802 | MS.gene031477:intron | 25.0% |
| ! | GTGTATCTTGATTTATTGAA+TGG | - | chr4.2:27522999-27523018 | MS.gene031477:intron | 25.0% |
| ! | TAAATTGTTTGATGTTTCCT+TGG | - | chr4.2:27521208-27521227 | MS.gene031477:intron | 25.0% |
| ! | TACAGCCAAAAATAATCAAT+GGG | - | chr4.2:27522498-27522517 | MS.gene031477:intron | 25.0% |
| ! | TATCAAATGAGTGTGATAAT+AGG | + | chr4.2:27523268-27523287 | None:intergenic | 25.0% |
| ! | TATTAATCGGTTAGATAGAT+AGG | - | chr4.2:27521782-27521801 | MS.gene031477:intron | 25.0% |
| !! | TTTAAGTTCAGTAAATCAGA+TGG | - | chr4.2:27521890-27521909 | MS.gene031477:intron | 25.0% |
| !! | TTTTACATTCTGATCAAGAT+CGG | + | chr4.2:27522794-27522813 | None:intergenic | 25.0% |
| !!! | ACTGATTTGATTTTGATAAC+TGG | - | chr4.2:27523081-27523100 | MS.gene031477:intron | 25.0% |
| !!! | GTACAAACCCTTTATTTTTT+TGG | + | chr4.2:27522587-27522606 | None:intergenic | 25.0% |
| !!! | TACAACCCATTGATTATTTT+TGG | + | chr4.2:27522506-27522525 | None:intergenic | 25.0% |
| !!! | TCTCTGGTTTTCAATTAATT+TGG | - | chr4.2:27523320-27523339 | MS.gene031477:CDS | 25.0% |
| !!! | TGATTACATGACTTGTTTTT+GGG | - | chr4.2:27520892-27520911 | MS.gene031477:intron | 25.0% |
| !!! | TTTTTTTCTTTTCTGGGTTT+AGG | - | chr4.2:27520787-27520806 | MS.gene031477:CDS | 25.0% |
| AAAAAACATCTCGTCATGAA+TGG | + | chr4.2:27523455-27523474 | None:intergenic | 30.0% | |
| AAAGTAGTGAGATTCAATAC+TGG | + | chr4.2:27520719-27520738 | None:intergenic | 30.0% | |
| AAGTAGTGAGATTCAATACT+GGG | + | chr4.2:27520718-27520737 | None:intergenic | 30.0% | |
| ACTAGATACCAAATTAACTG+AGG | + | chr4.2:27521998-27522017 | None:intergenic | 30.0% | |
| ACTATGCTATACTAGGATTT+AGG | - | chr4.2:27521479-27521498 | MS.gene031477:intron | 30.0% | |
| ACTCCTTAATCAACCTATAT+AGG | + | chr4.2:27522290-27522309 | None:intergenic | 30.0% | |
| AGAAGAGAAAGATGAAGAAA+GGG | + | chr4.2:27520493-27520512 | None:intergenic | 30.0% | |
| AGGTACAAAAGAACCTATAT+AGG | - | chr4.2:27522274-27522293 | MS.gene031477:intron | 30.0% | |
| AGTCACATAGTCAATAATTC+TGG | - | chr4.2:27521838-27521857 | MS.gene031477:intron | 30.0% | |
| ATATTTATGTACCTTACCCA+CGG | - | chr4.2:27523174-27523193 | MS.gene031477:intron | 30.0% | |
| CATGGAAATAACTATCACTA+TGG | - | chr4.2:27520821-27520840 | MS.gene031477:CDS | 30.0% | |
| CTAGATACCAAATTAACTGA+GGG | + | chr4.2:27521997-27522016 | None:intergenic | 30.0% | |
| GGCATGTTATATTTCAATCA+TGG | - | chr4.2:27522956-27522975 | MS.gene031477:intron | 30.0% | |
| GGGTAAGGTACATAAATATA+TGG | + | chr4.2:27523173-27523192 | None:intergenic | 30.0% | |
| GTACAGCCAAAAATAATCAA+TGG | - | chr4.2:27522497-27522516 | MS.gene031477:intron | 30.0% | |
| GTAGTAACCCAAATTTAGTA+AGG | + | chr4.2:27521157-27521176 | None:intergenic | 30.0% | |
| GTGATAATAGGACTTTAACA+AGG | + | chr4.2:27523256-27523275 | None:intergenic | 30.0% | |
| TAATCATACAGAAATCACCA+AGG | + | chr4.2:27522187-27522206 | None:intergenic | 30.0% | |
| TAATTATTCTGACGTTTCCT+TGG | - | chr4.2:27522167-27522186 | MS.gene031477:intron | 30.0% | |
| TAGAAGAGAAAGATGAAGAA+AGG | + | chr4.2:27520494-27520513 | None:intergenic | 30.0% | |
| TAGTTTATGATGTCACTAAC+CGG | - | chr4.2:27522695-27522714 | MS.gene031477:intron | 30.0% | |
| TATATCTACTCTTAACTCTC+TGG | - | chr4.2:27523304-27523323 | MS.gene031477:CDS | 30.0% | |
| TCTCTATACATCTACCTATT+TGG | + | chr4.2:27522884-27522903 | None:intergenic | 30.0% | |
| TGGTCTAATGTTGCTAAATA+AGG | - | chr4.2:27521932-27521951 | MS.gene031477:intron | 30.0% | |
| TTAAGGAGTTATGACATGTA+AGG | - | chr4.2:27522301-27522320 | MS.gene031477:intron | 30.0% | |
| TTTACATTCTGATCAAGATC+GGG | + | chr4.2:27522793-27522812 | None:intergenic | 30.0% | |
| ! | AAAGATGAAGAAAGGGTTTT+GGG | + | chr4.2:27520486-27520505 | None:intergenic | 30.0% |
| ! | AAGATTTGAGTTCAAATCTG+AGG | + | chr4.2:27520549-27520568 | None:intergenic | 30.0% |
| ! | ACAAGTAGTTCGAGTAATTT+TGG | - | chr4.2:27522377-27522396 | MS.gene031477:intron | 30.0% |
| ! | AGATTTGAGTTCAAATCTGA+GGG | + | chr4.2:27520548-27520567 | None:intergenic | 30.0% |
| ! | CAAGTAGTTCGAGTAATTTT+GGG | - | chr4.2:27522378-27522397 | MS.gene031477:intron | 30.0% |
| ! | TAGCCTTAAAAAACTATGTG+GGG | + | chr4.2:27521349-27521368 | None:intergenic | 30.0% |
| ! | TGTGATTTGTGTATACTACT+AGG | - | chr4.2:27522219-27522238 | MS.gene031477:intron | 30.0% |
| ! | TTCAGATTTGCTCCAAAATA+AGG | + | chr4.2:27523233-27523252 | None:intergenic | 30.0% |
| !! | CTAGCCTTAAAAAACTATGT+GGG | + | chr4.2:27521350-27521369 | None:intergenic | 30.0% |
| !! | GAACCTATATAGGTTGATTA+AGG | - | chr4.2:27522284-27522303 | MS.gene031477:intron | 30.0% |
| !! | TGGATTTTTATTTACCCGAA+CGG | + | chr4.2:27520683-27520702 | None:intergenic | 30.0% |
| !! | TGTATACTACTAGGTTGATT+AGG | - | chr4.2:27522228-27522247 | MS.gene031477:intron | 30.0% |
| !!! | AGATGTTTTTTCTTCGTGAA+AGG | - | chr4.2:27523464-27523483 | MS.gene031477:intron | 30.0% |
| !!! | AGTAAAACACCTTGCTTTTT+TGG | + | chr4.2:27521667-27521686 | None:intergenic | 30.0% |
| !!! | ATCACTTTTGTGCCTTATTT+TGG | - | chr4.2:27523218-27523237 | MS.gene031477:intron | 30.0% |
| !!! | GTCTTACATCTTTTTTGATC+TGG | - | chr4.2:27521447-27521466 | MS.gene031477:intron | 30.0% |
| !!! | GTGATTACATGACTTGTTTT+TGG | - | chr4.2:27520891-27520910 | MS.gene031477:intron | 30.0% |
| !!! | TTTTTTAAGGCTAGCTGATA+TGG | - | chr4.2:27521356-27521375 | MS.gene031477:intron | 30.0% |
| AAAAGCAATTCCATGACTGT+TGG | - | chr4.2:27520598-27520617 | MS.gene031477:intron | 35.0% | |
| AGCCTTAAAAAACTATGTGG+GGG | + | chr4.2:27521348-27521367 | None:intergenic | 35.0% | |
| ATACTCACATCATAAGCTAC+AGG | + | chr4.2:27521704-27521723 | None:intergenic | 35.0% | |
| ATACTGGGCAAGAAAAAGTT+TGG | + | chr4.2:27520703-27520722 | None:intergenic | 35.0% | |
| ATTCAGTGGAAGATGAAAAC+AGG | + | chr4.2:27520525-27520544 | None:intergenic | 35.0% | |
| ATTGTTGATGTGTGACTGTA+TGG | + | chr4.2:27522761-27522780 | None:intergenic | 35.0% | |
| CTCTCCTTAAAAAACTGTGT+GGG | + | chr4.2:27522353-27522372 | None:intergenic | 35.0% | |
| CTTGATTAGATGGCATTCTA+TGG | - | chr4.2:27522841-27522860 | MS.gene031477:intron | 35.0% | |
| GATCTATCCCTCAGTTAATT+TGG | - | chr4.2:27521987-27522006 | MS.gene031477:intron | 35.0% | |
| GTATCTTAGATGAGCTTTAC+TGG | - | chr4.2:27521720-27521739 | MS.gene031477:intron | 35.0% | |
| TCACCTCATATCATAAGCTA+GGG | + | chr4.2:27522547-27522566 | None:intergenic | 35.0% | |
| TCTCCTTAAAAAACTGTGTG+GGG | + | chr4.2:27522352-27522371 | None:intergenic | 35.0% | |
| TGAAGCTCGTTATTTATGAC+TGG | - | chr4.2:27521744-27521763 | MS.gene031477:intron | 35.0% | |
| TGACCTTTCTTAGCAACATT+GGG | + | chr4.2:27520992-27521011 | None:intergenic | 35.0% | |
| TTCACCTCATATCATAAGCT+AGG | + | chr4.2:27522548-27522567 | None:intergenic | 35.0% | |
| TTGACCTTTCTTAGCAACAT+TGG | + | chr4.2:27520993-27521012 | None:intergenic | 35.0% | |
| ! | CAGTCACACATCAACAATTT+TGG | - | chr4.2:27522763-27522782 | MS.gene031477:intron | 35.0% |
| ! | GAAAGATGAAGAAAGGGTTT+TGG | + | chr4.2:27520487-27520506 | None:intergenic | 35.0% |
| ! | GGTAACGTTGACTATTGATT+TGG | - | chr4.2:27520934-27520953 | MS.gene031477:intron | 35.0% |
| ! | TTATTGACTATGTGACTGCA+AGG | + | chr4.2:27521835-27521854 | None:intergenic | 35.0% |
| ! | TTTTTCTACAGCAGACTAGA+AGG | + | chr4.2:27521302-27521321 | None:intergenic | 35.0% |
| !! | ATTGATTTGGAATGGAAGAC+TGG | - | chr4.2:27520947-27520966 | MS.gene031477:intron | 35.0% |
| !! | CGTTGACTATTGATTTGGAA+TGG | - | chr4.2:27520939-27520958 | MS.gene031477:intron | 35.0% |
| !! | GCTAGCCTTAAAAAACTATG+TGG | + | chr4.2:27521351-27521370 | None:intergenic | 35.0% |
| !! | GTGTTTTCTGTTGCTTAATC+TGG | - | chr4.2:27521065-27521084 | MS.gene031477:intron | 35.0% |
| !! | TTAGTTCTAGTTCCATTACC+TGG | + | chr4.2:27523408-27523427 | None:intergenic | 35.0% |
| !!! | ATCCCCCACATAGTTTTTTA+AGG | - | chr4.2:27521343-27521362 | MS.gene031477:intron | 35.0% |
| !!! | CATCTTTTTTGATCTGGTTC+TGG | - | chr4.2:27521453-27521472 | MS.gene031477:intron | 35.0% |
| !!! | CTAGGATTTAGGAGCATTTT+TGG | - | chr4.2:27521490-27521509 | MS.gene031477:intron | 35.0% |
| !!! | TCTTTTTTTCCTTTCCAGAG+AGG | - | chr4.2:27523620-27523639 | MS.gene031477:CDS | 35.0% |
| !!! | TTAGGAGCATTTTTGGTTTG+AGG | - | chr4.2:27521497-27521516 | MS.gene031477:intron | 35.0% |
| AAACCGACAACAGAATGTTC+TGG | - | chr4.2:27523667-27523686 | MS.gene031477:CDS | 40.0% | |
| AACGGTGATTCTGTGTGAAT+CGG | + | chr4.2:27520665-27520684 | None:intergenic | 40.0% | |
| AAGGCACAAAAGTGATATCC+AGG | + | chr4.2:27523214-27523233 | None:intergenic | 40.0% | |
| ACGGAGTTTACTATATTCCC+TGG | - | chr4.2:27523193-27523212 | MS.gene031477:intron | 40.0% | |
| ACTAACCGGTTAGATAGTCT+GGG | - | chr4.2:27522709-27522728 | MS.gene031477:intron | 40.0% | |
| AGGCACAAAAGTGATATCCA+GGG | + | chr4.2:27523213-27523232 | None:intergenic | 40.0% | |
| AGGGAATATAGTAAACTCCG+TGG | + | chr4.2:27523194-27523213 | None:intergenic | 40.0% | |
| ATCCCCTAGCTTATGATATG+AGG | - | chr4.2:27522541-27522560 | MS.gene031477:intron | 40.0% | |
| ATTCACACAGAATCACCGTT+CGG | - | chr4.2:27520665-27520684 | MS.gene031477:intron | 40.0% | |
| ATTCTGTGTGAATCGGGTAA+AGG | + | chr4.2:27520658-27520677 | None:intergenic | 40.0% | |
| CAACAACAACCAAGCCATAT+GGG | + | chr4.2:27522466-27522485 | None:intergenic | 40.0% | |
| CAACCAGAACATTCTGTTGT+CGG | + | chr4.2:27523673-27523692 | None:intergenic | 40.0% | |
| CACCTCATATCATAAGCTAG+GGG | + | chr4.2:27522546-27522565 | None:intergenic | 40.0% | |
| CTCCTTAAAAAACTGTGTGG+GGG | + | chr4.2:27522351-27522370 | None:intergenic | 40.0% | |
| CTGGATGACTATGCTATACT+AGG | - | chr4.2:27521472-27521491 | MS.gene031477:intron | 40.0% | |
| CTGGCATGATTTAGTGCTAT+AGG | - | chr4.2:27521084-27521103 | MS.gene031477:intron | 40.0% | |
| GACCATGTAGTCAACAAATC+TGG | + | chr4.2:27521917-27521936 | None:intergenic | 40.0% | |
| GCTCTCCTTAAAAAACTGTG+TGG | + | chr4.2:27522354-27522373 | None:intergenic | 40.0% | |
| GCTGTCTGATCTTGATTAGA+TGG | - | chr4.2:27522831-27522850 | MS.gene031477:intron | 40.0% | |
| GGGAATATAGTAAACTCCGT+GGG | + | chr4.2:27523193-27523212 | None:intergenic | 40.0% | |
| TATAGTAAACTCCGTGGGTA+AGG | + | chr4.2:27523188-27523207 | None:intergenic | 40.0% | |
| TATGGAGATCGTGTTCAATC+TGG | - | chr4.2:27520839-27520858 | MS.gene031477:intron | 40.0% | |
| TCAATAGTCAACGTTACCTC+AGG | + | chr4.2:27520932-27520951 | None:intergenic | 40.0% | |
| TCACATCATAAGCTACAGGA+TGG | + | chr4.2:27521700-27521719 | None:intergenic | 40.0% | |
| TCATCTGCTTATCAGTAGCA+GGG | - | chr4.2:27523709-27523728 | MS.gene031477:CDS | 40.0% | |
| TCCTTAAAAAACTGTGTGGG+GGG | + | chr4.2:27522350-27522369 | None:intergenic | 40.0% | |
| TCTGGATTCTCCGATATTGA+TGG | - | chr4.2:27521856-27521875 | MS.gene031477:intron | 40.0% | |
| TGACTGTATGGATTCAGTGA+TGG | + | chr4.2:27522749-27522768 | None:intergenic | 40.0% | |
| TGATTTCATTCGCTTGTACC+AGG | - | chr4.2:27523387-27523406 | MS.gene031477:CDS | 40.0% | |
| TGCATACAGCCAAAAAAGCA+AGG | - | chr4.2:27521655-27521674 | MS.gene031477:intron | 40.0% | |
| TGCGAGACTTCCATCAATAT+CGG | + | chr4.2:27521869-27521888 | None:intergenic | 40.0% | |
| TTCAAATCTGAGGGATTCAG+TGG | + | chr4.2:27520539-27520558 | None:intergenic | 40.0% | |
| TTCATCTGCTTATCAGTAGC+AGG | - | chr4.2:27523708-27523727 | MS.gene031477:CDS | 40.0% | |
| TTCTGTGTGAATCGGGTAAA+GGG | + | chr4.2:27520657-27520676 | None:intergenic | 40.0% | |
| ! | ATCTGGATTTTCTGCCATAG+TGG | - | chr4.2:27521806-27521825 | MS.gene031477:intron | 40.0% |
| ! | CTGGCAGTGATTTCTTTTGT+TGG | - | chr4.2:27523100-27523119 | MS.gene031477:intron | 40.0% |
| ! | CTTTTAGTCTGCTGTAGGAA+AGG | - | chr4.2:27522254-27522273 | MS.gene031477:intron | 40.0% |
| ! | GAAAGGTACACATGCACAAT+TGG | - | chr4.2:27523481-27523500 | MS.gene031477:intron | 40.0% |
| ! | GGTTTCTTTTAGTCTGCTGT+AGG | - | chr4.2:27522249-27522268 | MS.gene031477:intron | 40.0% |
| ! | GTCTATGTCGAGATTTTGTG+AGG | - | chr4.2:27521409-27521428 | MS.gene031477:intron | 40.0% |
| ! | GTTTAGGTTACTTCGTCTCA+TGG | - | chr4.2:27520803-27520822 | MS.gene031477:CDS | 40.0% |
| ! | TTGGTTTGAGGAGTGATTCA+GGG | - | chr4.2:27521509-27521528 | MS.gene031477:intron | 40.0% |
| !! | GATGTCTTCTGAGATGCATT+TGG | + | chr4.2:27520578-27520597 | None:intergenic | 40.0% |
| !! | GTCCAGATTTGTTGACTACA+TGG | - | chr4.2:27521912-27521931 | MS.gene031477:intron | 40.0% |
| !! | TAATCCTACAGAAAGCACCA+AGG | + | chr4.2:27521228-27521247 | None:intergenic | 40.0% |
| !! | TTTGGTTTGAGGAGTGATTC+AGG | - | chr4.2:27521508-27521527 | MS.gene031477:intron | 40.0% |
| AACAACCAAGCCATATGGGT+CGG | + | chr4.2:27522462-27522481 | None:intergenic | 45.0% | |
| ACGGTGATTCTGTGTGAATC+GGG | + | chr4.2:27520664-27520683 | None:intergenic | 45.0% | |
| CACTAACCGGTTAGATAGTC+TGG | - | chr4.2:27522708-27522727 | MS.gene031477:intron | 45.0% | |
| CAGATCCCAGACTATCTAAC+CGG | + | chr4.2:27522717-27522736 | None:intergenic | 45.0% | |
| CAGGGAATCTGGATCCAAAT+AGG | - | chr4.2:27522867-27522886 | MS.gene031477:intron | 45.0% | |
| CATTCGCTTGTACCAGGTAA+TGG | - | chr4.2:27523393-27523412 | MS.gene031477:CDS | 45.0% | |
| CGGTTAGATAGATAGGGATC+TGG | - | chr4.2:27521789-27521808 | MS.gene031477:intron | 45.0% | |
| GCAACAACAACCAAGCCATA+TGG | + | chr4.2:27522467-27522486 | None:intergenic | 45.0% | |
| GGTGTACTTTCCAACAGTCA+TGG | + | chr4.2:27520611-27520630 | None:intergenic | 45.0% | |
| GTCTCCTACGTGAGATTTAC+TGG | - | chr4.2:27522647-27522666 | MS.gene031477:intron | 45.0% | |
| TCAGCCAGTAAATCTCACGT+AGG | + | chr4.2:27522654-27522673 | None:intergenic | 45.0% | |
| TGACTGCAAGGATTCCACTA+TGG | + | chr4.2:27521823-27521842 | None:intergenic | 45.0% | |
| TGGCCCAATGTTGCTAAGAA+AGG | - | chr4.2:27520986-27521005 | MS.gene031477:intron | 45.0% | |
| TGTATGGATTCAGTGATGGC+AGG | + | chr4.2:27522745-27522764 | None:intergenic | 45.0% | |
| TTCACACAGAATCACCGTTC+GGG | - | chr4.2:27520666-27520685 | MS.gene031477:intron | 45.0% | |
| TTCCAGAGAGGAAGAAATGC+AGG | - | chr4.2:27523632-27523651 | MS.gene031477:CDS | 45.0% | |
| ! | GCATTTCTTCCTCTCTGGAA+AGG | + | chr4.2:27523632-27523651 | None:intergenic | 45.0% |
| ! | TTTGGAATGGAAGACTGGTG+TGG | - | chr4.2:27520952-27520971 | MS.gene031477:intron | 45.0% |
| !! | GTTTCCTTGGTGCTTTCTGT+AGG | - | chr4.2:27521221-27521240 | MS.gene031477:intron | 45.0% |
| !!! | TCCCCCCACACAGTTTTTTA+AGG | - | chr4.2:27522346-27522365 | MS.gene031477:intron | 45.0% |
| ACCATCGTTAACCCCAACGA+GGG | - | chr4.2:27520628-27520647 | MS.gene031477:intron | 50.0% | |
| AGATGGCATTCTATGGCAGC+AGG | - | chr4.2:27522848-27522867 | MS.gene031477:intron | 50.0% | |
| AGCAACATTGGGCCAATCCT+TGG | + | chr4.2:27520981-27521000 | None:intergenic | 50.0% | |
| CAGTAGCAGGGTTGCAACTA+TGG | - | chr4.2:27523721-27523740 | MS.gene031477:CDS | 50.0% | |
| CTCCTGCATTTCTTCCTCTC+TGG | + | chr4.2:27523637-27523656 | None:intergenic | 50.0% | |
| GATGGCATTCTATGGCAGCA+GGG | - | chr4.2:27522849-27522868 | MS.gene031477:intron | 50.0% | |
| GGCTGCTGAGAATAAACCTG+AGG | - | chr4.2:27520913-27520932 | MS.gene031477:intron | 50.0% | |
| GGTAAAGGGTAACCCTCGTT+GGG | + | chr4.2:27520643-27520662 | None:intergenic | 50.0% | |
| GGTACACATGCACAATTGGC+TGG | - | chr4.2:27523485-27523504 | MS.gene031477:intron | 50.0% | |
| GTAAAGGGTAACCCTCGTTG+GGG | + | chr4.2:27520642-27520661 | None:intergenic | 50.0% | |
| TTCTATGGCAGCAGGGAATC+TGG | - | chr4.2:27522856-27522875 | MS.gene031477:intron | 50.0% | |
| ! | CGGTTAGATAGTCTGGGATC+TGG | - | chr4.2:27522715-27522734 | MS.gene031477:intron | 50.0% |
| ! | GCATTTGTTGCTGCAGAAGC+TGG | - | chr4.2:27520869-27520888 | MS.gene031477:intron | 50.0% |
| ACCCTCGTTGGGGTTAACGA+TGG | + | chr4.2:27520632-27520651 | None:intergenic | 55.0% | |
| AGCCATATGGGTCGGCTACA+CGG | + | chr4.2:27522454-27522473 | None:intergenic | 55.0% | |
| CACCATCGTTAACCCCAACG+AGG | - | chr4.2:27520627-27520646 | MS.gene031477:intron | 55.0% | |
| GGGTAAAGGGTAACCCTCGT+TGG | + | chr4.2:27520644-27520663 | None:intergenic | 55.0% | |
| TGTAGCCGACCCATATGGCT+TGG | - | chr4.2:27522454-27522473 | MS.gene031477:intron | 55.0% | |
| TTCCGTGTAGCCGACCCATA+TGG | - | chr4.2:27522449-27522468 | MS.gene031477:intron | 55.0% | |
| ! | CGAGATTTTGTGAGGTCGCG+AGG | - | chr4.2:27521417-27521436 | MS.gene031477:intron | 55.0% |
| ! | TTTTGTGAGGTCGCGAGGCT+AGG | - | chr4.2:27521422-27521441 | MS.gene031477:intron | 55.0% |
| CTGGTGTGGCAGCCAAGGAT+TGG | - | chr4.2:27520966-27520985 | MS.gene031477:intron | 60.0% | |
| GAAGACTGGTGTGGCAGCCA+AGG | - | chr4.2:27520961-27520980 | MS.gene031477:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 27520469 | 27523782 | 27520469 | ID=MS.gene031477 |
| chr4.2 | mRNA | 27520469 | 27523782 | 27520469 | ID=MS.gene031477.t1;Parent=MS.gene031477 |
| chr4.2 | exon | 27523564 | 27523782 | 27523564 | ID=MS.gene031477.t1.exon1;Parent=MS.gene031477.t1 |
| chr4.2 | CDS | 27523564 | 27523782 | 27523564 | ID=cds.MS.gene031477.t1;Parent=MS.gene031477.t1 |
| chr4.2 | exon | 27523233 | 27523442 | 27523233 | ID=MS.gene031477.t1.exon2;Parent=MS.gene031477.t1 |
| chr4.2 | CDS | 27523233 | 27523442 | 27523233 | ID=cds.MS.gene031477.t1;Parent=MS.gene031477.t1 |
| chr4.2 | exon | 27520766 | 27520842 | 27520766 | ID=MS.gene031477.t1.exon3;Parent=MS.gene031477.t1 |
| chr4.2 | CDS | 27520766 | 27520842 | 27520766 | ID=cds.MS.gene031477.t1;Parent=MS.gene031477.t1 |
| chr4.2 | exon | 27520469 | 27520613 | 27520469 | ID=MS.gene031477.t1.exon4;Parent=MS.gene031477.t1 |
| chr4.2 | CDS | 27520469 | 27520613 | 27520469 | ID=cds.MS.gene031477.t1;Parent=MS.gene031477.t1 |
| Gene Sequence |
| Protein sequence |
