Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56516.t1 | XP_013456763.1 | 98.2 | 169 | 3 | 0 | 1 | 169 | 48 | 216 | 6.90E-91 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56516.t1 | Q9LQY3 | 65.7 | 169 | 58 | 0 | 1 | 169 | 46 | 214 | 6.1e-64 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56516.t1 | I3T547 | 98.2 | 169 | 3 | 0 | 1 | 169 | 48 | 216 | 5.0e-91 | 343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031477 | MS.gene56516 | PPI |
| MS.gene27948 | MS.gene56516 | PPI |
| MS.gene37690 | MS.gene56516 | PPI |
| MS.gene96773 | MS.gene56516 | PPI |
| MS.gene030925 | MS.gene56516 | PPI |
| MS.gene072012 | MS.gene56516 | PPI |
| MS.gene047149 | MS.gene56516 | PPI |
| MS.gene070963 | MS.gene56516 | PPI |
| MS.gene56516 | MS.gene072012 | PPI |
| MS.gene34399 | MS.gene56516 | PPI |
| MS.gene67216 | MS.gene56516 | PPI |
| MS.gene006392 | MS.gene56516 | PPI |
| MS.gene006810 | MS.gene56516 | PPI |
| MS.gene002097 | MS.gene56516 | PPI |
| MS.gene47907 | MS.gene56516 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56516.t1 | MTR_4g082315 | 98.225 | 169 | 3 | 0 | 1 | 169 | 48 | 216 | 1.45e-126 | 354 |
| MS.gene56516.t1 | MTR_7g011490 | 66.864 | 169 | 56 | 0 | 1 | 169 | 44 | 212 | 1.58e-87 | 255 |
| MS.gene56516.t1 | MTR_6g012770 | 64.706 | 170 | 59 | 1 | 1 | 169 | 43 | 212 | 6.52e-86 | 251 |
| MS.gene56516.t1 | MTR_5g042260 | 54.386 | 171 | 76 | 2 | 1 | 169 | 49 | 219 | 5.65e-67 | 203 |
| MS.gene56516.t1 | MTR_5g042320 | 54.386 | 171 | 75 | 2 | 1 | 169 | 54 | 223 | 4.24e-63 | 194 |
| MS.gene56516.t1 | MTR_5g042270 | 50.588 | 170 | 77 | 2 | 1 | 169 | 22 | 185 | 6.11e-55 | 172 |
| MS.gene56516.t1 | MTR_5g058140 | 47.651 | 149 | 78 | 0 | 21 | 169 | 64 | 212 | 3.59e-53 | 168 |
| MS.gene56516.t1 | MTR_3g072600 | 45.732 | 164 | 85 | 2 | 6 | 169 | 58 | 217 | 8.73e-51 | 162 |
| MS.gene56516.t1 | MTR_2g007210 | 46.939 | 147 | 78 | 0 | 23 | 169 | 60 | 206 | 2.56e-50 | 160 |
| MS.gene56516.t1 | MTR_8g088940 | 45.860 | 157 | 80 | 2 | 18 | 169 | 55 | 211 | 1.75e-49 | 159 |
| MS.gene56516.t1 | MTR_8g088980 | 47.260 | 146 | 76 | 1 | 25 | 169 | 17 | 162 | 9.11e-49 | 155 |
| MS.gene56516.t1 | MTR_5g042320 | 54.032 | 124 | 54 | 2 | 1 | 122 | 54 | 176 | 2.77e-41 | 137 |
| MS.gene56516.t1 | MTR_5g042300 | 41.803 | 122 | 57 | 1 | 48 | 169 | 41 | 148 | 2.91e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56516.t1 | AT1G26690 | 65.680 | 169 | 58 | 0 | 1 | 169 | 46 | 214 | 6.96e-88 | 256 |
| MS.gene56516.t1 | AT1G69460 | 65.680 | 169 | 58 | 0 | 1 | 169 | 46 | 214 | 2.96e-85 | 249 |
| MS.gene56516.t1 | AT1G14010 | 63.905 | 169 | 61 | 0 | 1 | 169 | 44 | 212 | 1.20e-83 | 245 |
| MS.gene56516.t1 | AT2G03290 | 64.118 | 170 | 60 | 1 | 1 | 169 | 44 | 213 | 5.40e-80 | 236 |
| MS.gene56516.t1 | AT3G29070 | 56.805 | 169 | 73 | 0 | 1 | 169 | 57 | 225 | 7.69e-70 | 211 |
| MS.gene56516.t1 | AT2G03040 | 59.350 | 123 | 49 | 1 | 1 | 122 | 44 | 166 | 1.84e-50 | 160 |
| MS.gene56516.t1 | AT1G09580 | 45.946 | 148 | 79 | 1 | 23 | 169 | 70 | 217 | 3.24e-49 | 158 |
| MS.gene56516.t1 | AT1G57620 | 44.595 | 148 | 81 | 1 | 23 | 169 | 65 | 212 | 4.68e-45 | 147 |
| MS.gene56516.t1 | AT1G21900 | 42.568 | 148 | 84 | 1 | 23 | 169 | 69 | 216 | 3.54e-43 | 143 |
| MS.gene56516.t1 | AT3G10780 | 36.242 | 149 | 91 | 1 | 25 | 169 | 69 | 217 | 6.55e-29 | 106 |
Find 36 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTAGCAGGGTTGCAACTA+TGG | 0.311427 | 4.4:-30284596 | MS.gene56516:CDS |
| GGTAACGTTGACTATTGATT+TGG | 0.321195 | 4.4:-30287383 | MS.gene56516:CDS |
| TTCATCTGCTTATCAGTAGC+AGG | 0.391578 | 4.4:-30284609 | MS.gene56516:CDS |
| GGTAAAGGGTAACCCTCGTT+GGG | 0.404929 | 4.4:+30287677 | None:intergenic |
| CAACCAGAACATTCTGTTGT+CGG | 0.413003 | 4.4:+30284647 | None:intergenic |
| TGACCTTTCTTAGCAACATT+GGG | 0.430307 | 4.4:+30287328 | None:intergenic |
| AACGGTGATTCTGTGTGAAT+CGG | 0.435968 | 4.4:+30287655 | None:intergenic |
| AGCAACATTGGGCCAATCCT+TGG | 0.436187 | 4.4:+30287339 | None:intergenic |
| TATGGAGATCGTGTTCAATC+TGG | 0.449834 | 4.4:-30287478 | MS.gene56516:CDS |
| GCATTTGTTGCTGCAGAAGC+TGG | 0.459925 | 4.4:-30287448 | MS.gene56516:CDS |
| CATGGAAATAACTATCACTA+TGG | 0.460188 | 4.4:-30287496 | MS.gene56516:CDS |
| TTCTGTGTGAATCGGGTAAA+GGG | 0.479747 | 4.4:+30287663 | None:intergenic |
| CTGGTGTGGCAGCCAAGGAT+TGG | 0.480930 | 4.4:-30287351 | MS.gene56516:CDS |
| ACGGTGATTCTGTGTGAATC+GGG | 0.486370 | 4.4:+30287656 | None:intergenic |
| CGTTGACTATTGATTTGGAA+TGG | 0.486839 | 4.4:-30287378 | MS.gene56516:CDS |
| TTCACACAGAATCACCGTTC+GGG | 0.491934 | 4.4:-30287651 | MS.gene56516:intron |
| ATTCTGTGTGAATCGGGTAA+AGG | 0.500485 | 4.4:+30287662 | None:intergenic |
| AAACCGACAACAGAATGTTC+TGG | 0.503104 | 4.4:-30284650 | MS.gene56516:CDS |
| GTTTAGGTTACTTCGTCTCA+TGG | 0.505101 | 4.4:-30287514 | MS.gene56516:intron |
| TTCCAGAGAGGAAGAAATGC+AGG | 0.508533 | 4.4:-30284685 | MS.gene56516:intron |
| TCAATAGTCAACGTTACCTC+AGG | 0.509448 | 4.4:+30287388 | None:intergenic |
| AAAAGCAATTCCATGACAGT+TGG | 0.528569 | 4.4:-30287719 | None:intergenic |
| TTGACCTTTCTTAGCAACAT+TGG | 0.528677 | 4.4:+30287327 | None:intergenic |
| GAAGACTGGTGTGGCAGCCA+AGG | 0.530610 | 4.4:-30287356 | MS.gene56516:CDS |
| TGGCCCAATGTTGCTAAGAA+AGG | 0.532329 | 4.4:-30287331 | MS.gene56516:CDS |
| GGGTAAAGGGTAACCCTCGT+TGG | 0.534307 | 4.4:+30287676 | None:intergenic |
| ATTCACACAGAATCACCGTT+CGG | 0.542824 | 4.4:-30287652 | MS.gene56516:CDS |
| TCATCTGCTTATCAGTAGCA+GGG | 0.558169 | 4.4:-30284608 | MS.gene56516:CDS |
| ATTGATTTGGAATGGAAGAC+TGG | 0.560840 | 4.4:-30287370 | MS.gene56516:CDS |
| GGTGTACTTTCCAACTGTCA+TGG | 0.573214 | 4.4:+30287709 | None:intergenic |
| ACCCTCGTTGGGGTTAACGA+TGG | 0.671660 | 4.4:+30287688 | None:intergenic |
| GGCTGCTGAGAATAAACCTG+AGG | 0.681417 | 4.4:-30287404 | MS.gene56516:CDS |
| GTAAAGGGTAACCCTCGTTG+GGG | 0.688463 | 4.4:+30287678 | None:intergenic |
| CACCATCGTTAACCCCAACG+AGG | 0.704046 | 4.4:-30287690 | MS.gene56516:CDS |
| TTTGGAATGGAAGACTGGTG+TGG | 0.728474 | 4.4:-30287365 | MS.gene56516:CDS |
| ACCATCGTTAACCCCAACGA+GGG | 0.730690 | 4.4:-30287689 | MS.gene56516:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATATTTATTATATTCTA+TGG | - | chr4.4:30286882-30286901 | MS.gene56516:intron | 10.0% |
| !! | TAGTAATTTATGATATTAAT+CGG | - | chr4.4:30285716-30285735 | MS.gene56516:intron | 10.0% |
| !! | AAACAAATTAGAATTTAGTA+AGG | + | chr4.4:30286061-30286080 | None:intergenic | 15.0% |
| !! | ACATAATTCCAAAAAAATAA+AGG | - | chr4.4:30286523-30286542 | MS.gene56516:intron | 15.0% |
| !! | ATATTACAAATTTACCATTA+AGG | + | chr4.4:30286869-30286888 | None:intergenic | 15.0% |
| !! | CATAATTCCAAAAAAATAAA+GGG | - | chr4.4:30286524-30286543 | MS.gene56516:intron | 15.0% |
| !!! | AGTACATTTTTTTTAATAAC+TGG | - | chr4.4:30285125-30285144 | MS.gene56516:intron | 15.0% |
| !!! | GTACATTTTTTTTAATAACT+GGG | - | chr4.4:30285126-30285145 | MS.gene56516:intron | 15.0% |
| !!! | TATTAATTAATAGGTTGATT+AGG | - | chr4.4:30285221-30285240 | MS.gene56516:intron | 15.0% |
| !!! | TCTATAATATATTTTCAAGT+TGG | - | chr4.4:30284979-30284998 | MS.gene56516:intron | 15.0% |
| !!! | TTATTTTTTTGGAATTATGT+AGG | + | chr4.4:30286523-30286542 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTTTTCTTTTCT+GGG | - | chr4.4:30284728-30284747 | MS.gene56516:intron | 15.0% |
| !!! | TTTGATTTTTTTTTCTTTTC+TGG | - | chr4.4:30284727-30284746 | MS.gene56516:intron | 15.0% |
| !! | ACTAGATGTATATTAAAGTA+AGG | - | chr4.4:30285060-30285079 | MS.gene56516:intron | 20.0% |
| !! | ATCTGTGTGTATTAATTAAT+AGG | - | chr4.4:30285212-30285231 | MS.gene56516:intron | 20.0% |
| !! | CTAGATGTATATTAAAGTAA+GGG | - | chr4.4:30285061-30285080 | MS.gene56516:intron | 20.0% |
| !! | GTAGTTAAAGTAAAGTAATT+TGG | - | chr4.4:30285534-30285553 | MS.gene56516:intron | 20.0% |
| !! | TTAAAGATTTGTATCCTTAA+TGG | - | chr4.4:30286852-30286871 | MS.gene56516:intron | 20.0% |
| !!! | ATTCAACTGTTTTTGATTAA+TGG | - | chr4.4:30284693-30284712 | MS.gene56516:intron | 20.0% |
| !!! | TTCAACTGTTTTTGATTAAT+GGG | - | chr4.4:30284694-30284713 | MS.gene56516:intron | 20.0% |
| ! | AATACACTCCTTACTAAATT+TGG | - | chr4.4:30285093-30285112 | MS.gene56516:intron | 25.0% |
| ! | ACAAGCACAATTAATGAAAA+AGG | + | chr4.4:30286092-30286111 | None:intergenic | 25.0% |
| ! | AGTTATCAAAATCAAATCAG+TGG | + | chr4.4:30287029-30287048 | None:intergenic | 25.0% |
| ! | ATACACTCCTTACTAAATTT+GGG | - | chr4.4:30285094-30285113 | MS.gene56516:intron | 25.0% |
| ! | ATTAATCGGTTAGATAGATA+GGG | - | chr4.4:30285730-30285749 | MS.gene56516:intron | 25.0% |
| ! | GTGTATCTTGATTTATTGAA+TGG | - | chr4.4:30286946-30286965 | MS.gene56516:intron | 25.0% |
| ! | TAAATTGTTTGATGTTTCCT+TGG | - | chr4.4:30285155-30285174 | MS.gene56516:intron | 25.0% |
| ! | TACAGCCAAAAATAATCAAT+GGG | - | chr4.4:30286445-30286464 | MS.gene56516:intron | 25.0% |
| ! | TATCAAATGAGTGTGATAAT+AGG | + | chr4.4:30287215-30287234 | None:intergenic | 25.0% |
| ! | TATTAATCGGTTAGATAGAT+AGG | - | chr4.4:30285729-30285748 | MS.gene56516:intron | 25.0% |
| !! | TTTAAGTTCAGTAAATCAGA+TGG | - | chr4.4:30285837-30285856 | MS.gene56516:intron | 25.0% |
| !! | TTTTACATTCTGATCAAGAT+CGG | + | chr4.4:30286741-30286760 | None:intergenic | 25.0% |
| !!! | ACTGATTTGATTTTGATAAC+TGG | - | chr4.4:30287028-30287047 | MS.gene56516:intron | 25.0% |
| !!! | GTACAAACCCTTTATTTTTT+TGG | + | chr4.4:30286534-30286553 | None:intergenic | 25.0% |
| !!! | TACAACCCATTGATTATTTT+TGG | + | chr4.4:30286453-30286472 | None:intergenic | 25.0% |
| !!! | TCTCTGGTTTTCAATTAATT+TGG | - | chr4.4:30287267-30287286 | MS.gene56516:intron | 25.0% |
| !!! | TGATTACATGACTTGTTTTT+GGG | - | chr4.4:30284839-30284858 | MS.gene56516:intron | 25.0% |
| !!! | TTTTTTTCTTTTCTGGGTTT+AGG | - | chr4.4:30284734-30284753 | MS.gene56516:intron | 25.0% |
| AAAAAACATCTCGTCATGAA+TGG | + | chr4.4:30287402-30287421 | None:intergenic | 30.0% | |
| AAAGTAGTGAGATTCAATAC+TGG | + | chr4.4:30284666-30284685 | None:intergenic | 30.0% | |
| AAGTAGTGAGATTCAATACT+GGG | + | chr4.4:30284665-30284684 | None:intergenic | 30.0% | |
| ACTAGATACCAAATTAACTG+AGG | + | chr4.4:30285945-30285964 | None:intergenic | 30.0% | |
| ACTATGCTATACTAGGATTT+AGG | - | chr4.4:30285426-30285445 | MS.gene56516:intron | 30.0% | |
| ACTCCTTAATCAACCTATAT+AGG | + | chr4.4:30286237-30286256 | None:intergenic | 30.0% | |
| AGGTACAAAAGAACCTATAT+AGG | - | chr4.4:30286221-30286240 | MS.gene56516:intron | 30.0% | |
| AGTCACATAGTCAATAATTC+TGG | - | chr4.4:30285785-30285804 | MS.gene56516:intron | 30.0% | |
| ATATTTATGTACCTTACCCA+CGG | - | chr4.4:30287121-30287140 | MS.gene56516:intron | 30.0% | |
| CATGGAAATAACTATCACTA+TGG | - | chr4.4:30284768-30284787 | MS.gene56516:intron | 30.0% | |
| CTAGATACCAAATTAACTGA+GGG | + | chr4.4:30285944-30285963 | None:intergenic | 30.0% | |
| GGCATGTTATATTTCAATCA+TGG | - | chr4.4:30286903-30286922 | MS.gene56516:intron | 30.0% | |
| GGGTAAGGTACATAAATATA+TGG | + | chr4.4:30287120-30287139 | None:intergenic | 30.0% | |
| GTACAGCCAAAAATAATCAA+TGG | - | chr4.4:30286444-30286463 | MS.gene56516:intron | 30.0% | |
| GTAGTAACCCAAATTTAGTA+AGG | + | chr4.4:30285104-30285123 | None:intergenic | 30.0% | |
| GTGATAATAGGACTTTAACA+AGG | + | chr4.4:30287203-30287222 | None:intergenic | 30.0% | |
| TAATCATACAGAAATCACCA+AGG | + | chr4.4:30286134-30286153 | None:intergenic | 30.0% | |
| TAATTATTCTGACGTTTCCT+TGG | - | chr4.4:30286114-30286133 | MS.gene56516:intron | 30.0% | |
| TAGTTTATGATGTCACTAAC+CGG | - | chr4.4:30286642-30286661 | MS.gene56516:intron | 30.0% | |
| TATATCTACTCTTAACTCTC+TGG | - | chr4.4:30287251-30287270 | MS.gene56516:intron | 30.0% | |
| TCTCTATACATCTACCTATT+TGG | + | chr4.4:30286831-30286850 | None:intergenic | 30.0% | |
| TGGTCTAATGTTGCTAAATA+AGG | - | chr4.4:30285879-30285898 | MS.gene56516:intron | 30.0% | |
| TTAAGGAGTTATGACATGTA+AGG | - | chr4.4:30286248-30286267 | MS.gene56516:intron | 30.0% | |
| TTTACATTCTGATCAAGATC+GGG | + | chr4.4:30286740-30286759 | None:intergenic | 30.0% | |
| ! | ACAAGTAGTTCGAGTAATTT+TGG | - | chr4.4:30286324-30286343 | MS.gene56516:intron | 30.0% |
| ! | CAAGTAGTTCGAGTAATTTT+GGG | - | chr4.4:30286325-30286344 | MS.gene56516:intron | 30.0% |
| ! | TAGCCTTAAAAAACTATGTG+GGG | + | chr4.4:30285296-30285315 | None:intergenic | 30.0% |
| ! | TGTGATTTGTGTATACTACT+AGG | - | chr4.4:30286166-30286185 | MS.gene56516:intron | 30.0% |
| ! | TTCAGATTTGCTCCAAAATA+AGG | + | chr4.4:30287180-30287199 | None:intergenic | 30.0% |
| !! | CTAGCCTTAAAAAACTATGT+GGG | + | chr4.4:30285297-30285316 | None:intergenic | 30.0% |
| !! | GAACCTATATAGGTTGATTA+AGG | - | chr4.4:30286231-30286250 | MS.gene56516:intron | 30.0% |
| !! | TGGATTTTTATTTACCCGAA+CGG | + | chr4.4:30284630-30284649 | None:intergenic | 30.0% |
| !! | TGTATACTACTAGGTTGATT+AGG | - | chr4.4:30286175-30286194 | MS.gene56516:intron | 30.0% |
| !!! | AGATGTTTTTTCTTCGTGAA+AGG | - | chr4.4:30287411-30287430 | MS.gene56516:CDS | 30.0% |
| !!! | AGTAAAACACCTTGCTTTTT+TGG | + | chr4.4:30285614-30285633 | None:intergenic | 30.0% |
| !!! | ATCACTTTTGTGCCTTATTT+TGG | - | chr4.4:30287165-30287184 | MS.gene56516:intron | 30.0% |
| !!! | GTCTTACATCTTTTTTGATC+TGG | - | chr4.4:30285394-30285413 | MS.gene56516:intron | 30.0% |
| !!! | GTGATTACATGACTTGTTTT+TGG | - | chr4.4:30284838-30284857 | MS.gene56516:intron | 30.0% |
| !!! | TTTTTTAAGGCTAGCTGATA+TGG | - | chr4.4:30285303-30285322 | MS.gene56516:intron | 30.0% |
| AGCCTTAAAAAACTATGTGG+GGG | + | chr4.4:30285295-30285314 | None:intergenic | 35.0% | |
| ATACTCACATCATAAGCTAC+AGG | + | chr4.4:30285651-30285670 | None:intergenic | 35.0% | |
| ATACTGGGCAAGAAAAAGTT+TGG | + | chr4.4:30284650-30284669 | None:intergenic | 35.0% | |
| ATTGTTGATGTGTGACTGTA+TGG | + | chr4.4:30286708-30286727 | None:intergenic | 35.0% | |
| CTCTCCTTAAAAAACTGTGT+GGG | + | chr4.4:30286300-30286319 | None:intergenic | 35.0% | |
| CTTGATTAGATGGCATTCTA+TGG | - | chr4.4:30286788-30286807 | MS.gene56516:intron | 35.0% | |
| GATCTATCCCTCAGTTAATT+TGG | - | chr4.4:30285934-30285953 | MS.gene56516:intron | 35.0% | |
| GTATCTTAGATGAGCTTTAC+TGG | - | chr4.4:30285667-30285686 | MS.gene56516:intron | 35.0% | |
| TCACCTCATATCATAAGCTA+GGG | + | chr4.4:30286494-30286513 | None:intergenic | 35.0% | |
| TCTCCTTAAAAAACTGTGTG+GGG | + | chr4.4:30286299-30286318 | None:intergenic | 35.0% | |
| TGAAGCTCGTTATTTATGAC+TGG | - | chr4.4:30285691-30285710 | MS.gene56516:intron | 35.0% | |
| TGACCTTTCTTAGCAACATT+GGG | + | chr4.4:30284939-30284958 | None:intergenic | 35.0% | |
| TTCACCTCATATCATAAGCT+AGG | + | chr4.4:30286495-30286514 | None:intergenic | 35.0% | |
| TTGACCTTTCTTAGCAACAT+TGG | + | chr4.4:30284940-30284959 | None:intergenic | 35.0% | |
| ! | CAGTCACACATCAACAATTT+TGG | - | chr4.4:30286710-30286729 | MS.gene56516:intron | 35.0% |
| ! | GGTAACGTTGACTATTGATT+TGG | - | chr4.4:30284881-30284900 | MS.gene56516:CDS | 35.0% |
| ! | TTATTGACTATGTGACTGCA+AGG | + | chr4.4:30285782-30285801 | None:intergenic | 35.0% |
| ! | TTTTTCTACAGCAGACTAGA+AGG | + | chr4.4:30285249-30285268 | None:intergenic | 35.0% |
| !! | ATTGATTTGGAATGGAAGAC+TGG | - | chr4.4:30284894-30284913 | MS.gene56516:CDS | 35.0% |
| !! | CGTTGACTATTGATTTGGAA+TGG | - | chr4.4:30284886-30284905 | MS.gene56516:CDS | 35.0% |
| !! | GCTAGCCTTAAAAAACTATG+TGG | + | chr4.4:30285298-30285317 | None:intergenic | 35.0% |
| !! | GTGTTTTCTGTTGCTTAATC+TGG | - | chr4.4:30285012-30285031 | MS.gene56516:intron | 35.0% |
| !! | TTAGTTCTAGTTCCATTACC+TGG | + | chr4.4:30287355-30287374 | None:intergenic | 35.0% |
| !!! | ATCCCCCACATAGTTTTTTA+AGG | - | chr4.4:30285290-30285309 | MS.gene56516:intron | 35.0% |
| !!! | CATCTTTTTTGATCTGGTTC+TGG | - | chr4.4:30285400-30285419 | MS.gene56516:intron | 35.0% |
| !!! | CTAGGATTTAGGAGCATTTT+TGG | - | chr4.4:30285437-30285456 | MS.gene56516:intron | 35.0% |
| !!! | TCTTTTTTTCCTTTCCAGAG+AGG | - | chr4.4:30287567-30287586 | MS.gene56516:intron | 35.0% |
| !!! | TTAGGAGCATTTTTGGTTTG+AGG | - | chr4.4:30285444-30285463 | MS.gene56516:intron | 35.0% |
| AAACCGACAACAGAATGTTC+TGG | - | chr4.4:30287614-30287633 | MS.gene56516:intron | 40.0% | |
| AACGGTGATTCTGTGTGAAT+CGG | + | chr4.4:30284612-30284631 | None:intergenic | 40.0% | |
| AAGGCACAAAAGTGATATCC+AGG | + | chr4.4:30287161-30287180 | None:intergenic | 40.0% | |
| ACGGAGTTTACTATATTCCC+TGG | - | chr4.4:30287140-30287159 | MS.gene56516:intron | 40.0% | |
| ACTAACCGGTTAGATAGTCT+GGG | - | chr4.4:30286656-30286675 | MS.gene56516:intron | 40.0% | |
| AGGCACAAAAGTGATATCCA+GGG | + | chr4.4:30287160-30287179 | None:intergenic | 40.0% | |
| AGGGAATATAGTAAACTCCG+TGG | + | chr4.4:30287141-30287160 | None:intergenic | 40.0% | |
| ATCCCCTAGCTTATGATATG+AGG | - | chr4.4:30286488-30286507 | MS.gene56516:intron | 40.0% | |
| ATTCACACAGAATCACCGTT+CGG | - | chr4.4:30284612-30284631 | MS.gene56516:CDS | 40.0% | |
| ATTCTGTGTGAATCGGGTAA+AGG | + | chr4.4:30284605-30284624 | None:intergenic | 40.0% | |
| CAACAACAACCAAGCCATAT+GGG | + | chr4.4:30286413-30286432 | None:intergenic | 40.0% | |
| CAACCAGAACATTCTGTTGT+CGG | + | chr4.4:30287620-30287639 | None:intergenic | 40.0% | |
| CACCTCATATCATAAGCTAG+GGG | + | chr4.4:30286493-30286512 | None:intergenic | 40.0% | |
| CTCCTTAAAAAACTGTGTGG+GGG | + | chr4.4:30286298-30286317 | None:intergenic | 40.0% | |
| CTGGATGACTATGCTATACT+AGG | - | chr4.4:30285419-30285438 | MS.gene56516:intron | 40.0% | |
| CTGGCATGATTTAGTGCTAT+AGG | - | chr4.4:30285031-30285050 | MS.gene56516:intron | 40.0% | |
| GACCATGTAGTCAACAAATC+TGG | + | chr4.4:30285864-30285883 | None:intergenic | 40.0% | |
| GCTCTCCTTAAAAAACTGTG+TGG | + | chr4.4:30286301-30286320 | None:intergenic | 40.0% | |
| GCTGTCTGATCTTGATTAGA+TGG | - | chr4.4:30286778-30286797 | MS.gene56516:intron | 40.0% | |
| GGGAATATAGTAAACTCCGT+GGG | + | chr4.4:30287140-30287159 | None:intergenic | 40.0% | |
| TATAGTAAACTCCGTGGGTA+AGG | + | chr4.4:30287135-30287154 | None:intergenic | 40.0% | |
| TATGGAGATCGTGTTCAATC+TGG | - | chr4.4:30284786-30284805 | MS.gene56516:intron | 40.0% | |
| TCAATAGTCAACGTTACCTC+AGG | + | chr4.4:30284879-30284898 | None:intergenic | 40.0% | |
| TCACATCATAAGCTACAGGA+TGG | + | chr4.4:30285647-30285666 | None:intergenic | 40.0% | |
| TCATCTGCTTATCAGTAGCA+GGG | - | chr4.4:30287656-30287675 | MS.gene56516:CDS | 40.0% | |
| TCCTTAAAAAACTGTGTGGG+GGG | + | chr4.4:30286297-30286316 | None:intergenic | 40.0% | |
| TCTGGATTCTCCGATATTGA+TGG | - | chr4.4:30285803-30285822 | MS.gene56516:intron | 40.0% | |
| TGACTGTATGGATTCAGTGA+TGG | + | chr4.4:30286696-30286715 | None:intergenic | 40.0% | |
| TGATTTCATTCGCTTGTACC+AGG | - | chr4.4:30287334-30287353 | MS.gene56516:CDS | 40.0% | |
| TGCATACAGCCAAAAAAGCA+AGG | - | chr4.4:30285602-30285621 | MS.gene56516:intron | 40.0% | |
| TGCGAGACTTCCATCAATAT+CGG | + | chr4.4:30285816-30285835 | None:intergenic | 40.0% | |
| TTCATCTGCTTATCAGTAGC+AGG | - | chr4.4:30287655-30287674 | MS.gene56516:CDS | 40.0% | |
| TTCTGTGTGAATCGGGTAAA+GGG | + | chr4.4:30284604-30284623 | None:intergenic | 40.0% | |
| ! | ATCTGGATTTTCTGCCATAG+TGG | - | chr4.4:30285753-30285772 | MS.gene56516:intron | 40.0% |
| ! | CTGGCAGTGATTTCTTTTGT+TGG | - | chr4.4:30287047-30287066 | MS.gene56516:intron | 40.0% |
| ! | CTTTTAGTCTGCTGTAGGAA+AGG | - | chr4.4:30286201-30286220 | MS.gene56516:intron | 40.0% |
| ! | GAAAGGTACACATGCACAAT+TGG | - | chr4.4:30287428-30287447 | MS.gene56516:CDS | 40.0% |
| ! | GGTTTCTTTTAGTCTGCTGT+AGG | - | chr4.4:30286196-30286215 | MS.gene56516:intron | 40.0% |
| ! | GTCTATGTCGAGATTTTGTG+AGG | - | chr4.4:30285356-30285375 | MS.gene56516:intron | 40.0% |
| ! | GTTTAGGTTACTTCGTCTCA+TGG | - | chr4.4:30284750-30284769 | MS.gene56516:intron | 40.0% |
| ! | TTGGTTTGAGGAGTGATTCA+GGG | - | chr4.4:30285456-30285475 | MS.gene56516:intron | 40.0% |
| !! | GTCCAGATTTGTTGACTACA+TGG | - | chr4.4:30285859-30285878 | MS.gene56516:intron | 40.0% |
| !! | TAATCCTACAGAAAGCACCA+AGG | + | chr4.4:30285175-30285194 | None:intergenic | 40.0% |
| !! | TTTGGTTTGAGGAGTGATTC+AGG | - | chr4.4:30285455-30285474 | MS.gene56516:intron | 40.0% |
| AACAACCAAGCCATATGGGT+CGG | + | chr4.4:30286409-30286428 | None:intergenic | 45.0% | |
| ACGGTGATTCTGTGTGAATC+GGG | + | chr4.4:30284611-30284630 | None:intergenic | 45.0% | |
| CACTAACCGGTTAGATAGTC+TGG | - | chr4.4:30286655-30286674 | MS.gene56516:intron | 45.0% | |
| CAGATCCCAGACTATCTAAC+CGG | + | chr4.4:30286664-30286683 | None:intergenic | 45.0% | |
| CAGGGAATCTGGATCCAAAT+AGG | - | chr4.4:30286814-30286833 | MS.gene56516:intron | 45.0% | |
| CATTCGCTTGTACCAGGTAA+TGG | - | chr4.4:30287340-30287359 | MS.gene56516:CDS | 45.0% | |
| CGGTTAGATAGATAGGGATC+TGG | - | chr4.4:30285736-30285755 | MS.gene56516:intron | 45.0% | |
| GCAACAACAACCAAGCCATA+TGG | + | chr4.4:30286414-30286433 | None:intergenic | 45.0% | |
| GTCTCCTACGTGAGATTTAC+TGG | - | chr4.4:30286594-30286613 | MS.gene56516:intron | 45.0% | |
| TCAGCCAGTAAATCTCACGT+AGG | + | chr4.4:30286601-30286620 | None:intergenic | 45.0% | |
| TGACTGCAAGGATTCCACTA+TGG | + | chr4.4:30285770-30285789 | None:intergenic | 45.0% | |
| TGGCCCAATGTTGCTAAGAA+AGG | - | chr4.4:30284933-30284952 | MS.gene56516:intron | 45.0% | |
| TGTATGGATTCAGTGATGGC+AGG | + | chr4.4:30286692-30286711 | None:intergenic | 45.0% | |
| TTCACACAGAATCACCGTTC+GGG | - | chr4.4:30284613-30284632 | MS.gene56516:CDS | 45.0% | |
| TTCCAGAGAGGAAGAAATGC+AGG | - | chr4.4:30287579-30287598 | MS.gene56516:intron | 45.0% | |
| ! | GCATTTCTTCCTCTCTGGAA+AGG | + | chr4.4:30287579-30287598 | None:intergenic | 45.0% |
| ! | TTTGGAATGGAAGACTGGTG+TGG | - | chr4.4:30284899-30284918 | MS.gene56516:CDS | 45.0% |
| !! | GTTTCCTTGGTGCTTTCTGT+AGG | - | chr4.4:30285168-30285187 | MS.gene56516:intron | 45.0% |
| !!! | TCCCCCCACACAGTTTTTTA+AGG | - | chr4.4:30286293-30286312 | MS.gene56516:intron | 45.0% |
| ACCATCGTTAACCCCAACGA+GGG | - | chr4.4:30284575-30284594 | MS.gene56516:CDS | 50.0% | |
| AGATGGCATTCTATGGCAGC+AGG | - | chr4.4:30286795-30286814 | MS.gene56516:intron | 50.0% | |
| AGCAACATTGGGCCAATCCT+TGG | + | chr4.4:30284928-30284947 | None:intergenic | 50.0% | |
| CAGTAGCAGGGTTGCAACTA+TGG | - | chr4.4:30287668-30287687 | MS.gene56516:CDS | 50.0% | |
| CTCCTGCATTTCTTCCTCTC+TGG | + | chr4.4:30287584-30287603 | None:intergenic | 50.0% | |
| GATGGCATTCTATGGCAGCA+GGG | - | chr4.4:30286796-30286815 | MS.gene56516:intron | 50.0% | |
| GGCTGCTGAGAATAAACCTG+AGG | - | chr4.4:30284860-30284879 | MS.gene56516:CDS | 50.0% | |
| GGTAAAGGGTAACCCTCGTT+GGG | + | chr4.4:30284590-30284609 | None:intergenic | 50.0% | |
| GGTACACATGCACAATTGGC+TGG | - | chr4.4:30287432-30287451 | MS.gene56516:CDS | 50.0% | |
| GTAAAGGGTAACCCTCGTTG+GGG | + | chr4.4:30284589-30284608 | None:intergenic | 50.0% | |
| TTCTATGGCAGCAGGGAATC+TGG | - | chr4.4:30286803-30286822 | MS.gene56516:intron | 50.0% | |
| ! | CGGTTAGATAGTCTGGGATC+TGG | - | chr4.4:30286662-30286681 | MS.gene56516:intron | 50.0% |
| ! | GCATTTGTTGCTGCAGAAGC+TGG | - | chr4.4:30284816-30284835 | MS.gene56516:intron | 50.0% |
| ACCCTCGTTGGGGTTAACGA+TGG | + | chr4.4:30284579-30284598 | None:intergenic | 55.0% | |
| AGCCATATGGGTCGGCTACA+CGG | + | chr4.4:30286401-30286420 | None:intergenic | 55.0% | |
| CACCATCGTTAACCCCAACG+AGG | - | chr4.4:30284574-30284593 | MS.gene56516:CDS | 55.0% | |
| GGGTAAAGGGTAACCCTCGT+TGG | + | chr4.4:30284591-30284610 | None:intergenic | 55.0% | |
| TGTAGCCGACCCATATGGCT+TGG | - | chr4.4:30286401-30286420 | MS.gene56516:intron | 55.0% | |
| TTCCGTGTAGCCGACCCATA+TGG | - | chr4.4:30286396-30286415 | MS.gene56516:intron | 55.0% | |
| ! | CGAGATTTTGTGAGGTCGCG+AGG | - | chr4.4:30285364-30285383 | MS.gene56516:intron | 55.0% |
| ! | TTTTGTGAGGTCGCGAGGCT+AGG | - | chr4.4:30285369-30285388 | MS.gene56516:intron | 55.0% |
| CTGGTGTGGCAGCCAAGGAT+TGG | - | chr4.4:30284913-30284932 | MS.gene56516:intron | 60.0% | |
| GAAGACTGGTGTGGCAGCCA+AGG | - | chr4.4:30284908-30284927 | MS.gene56516:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30284557 | 30287729 | 30284557 | ID=MS.gene56516 |
| chr4.4 | mRNA | 30284557 | 30287729 | 30284557 | ID=MS.gene56516.t1;Parent=MS.gene56516 |
| chr4.4 | exon | 30287652 | 30287729 | 30287652 | ID=MS.gene56516.t1.exon1;Parent=MS.gene56516.t1 |
| chr4.4 | CDS | 30287652 | 30287729 | 30287652 | ID=cds.MS.gene56516.t1;Parent=MS.gene56516.t1 |
| chr4.4 | exon | 30287321 | 30287530 | 30287321 | ID=MS.gene56516.t1.exon2;Parent=MS.gene56516.t1 |
| chr4.4 | CDS | 30287321 | 30287530 | 30287321 | ID=cds.MS.gene56516.t1;Parent=MS.gene56516.t1 |
| chr4.4 | exon | 30284854 | 30284930 | 30284854 | ID=MS.gene56516.t1.exon3;Parent=MS.gene56516.t1 |
| chr4.4 | CDS | 30284854 | 30284930 | 30284854 | ID=cds.MS.gene56516.t1;Parent=MS.gene56516.t1 |
| chr4.4 | exon | 30284557 | 30284701 | 30284557 | ID=MS.gene56516.t1.exon4;Parent=MS.gene56516.t1 |
| chr4.4 | CDS | 30284557 | 30284701 | 30284557 | ID=cds.MS.gene56516.t1;Parent=MS.gene56516.t1 |
| Gene Sequence |
| Protein sequence |
