Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96773.t1 | XP_013456763.1 | 98.1 | 216 | 4 | 0 | 1 | 216 | 1 | 216 | 1.10E-114 | 422.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96773.t1 | Q9LQY3 | 65.5 | 203 | 70 | 0 | 14 | 216 | 12 | 214 | 2.9e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96773.t1 | I3T547 | 98.1 | 216 | 4 | 0 | 1 | 216 | 1 | 216 | 8.2e-115 | 422.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37690 | MS.gene96773 | PPI |
| MS.gene006392 | MS.gene96773 | PPI |
| MS.gene96773 | MS.gene072012 | PPI |
| MS.gene006810 | MS.gene96773 | PPI |
| MS.gene002097 | MS.gene96773 | PPI |
| MS.gene47907 | MS.gene96773 | PPI |
| MS.gene96773 | MS.gene56516 | PPI |
| MS.gene031477 | MS.gene96773 | PPI |
| MS.gene27948 | MS.gene96773 | PPI |
| MS.gene96773 | MS.gene67216 | PPI |
| MS.gene047149 | MS.gene96773 | PPI |
| MS.gene070963 | MS.gene96773 | PPI |
| MS.gene96773 | MS.gene030925 | PPI |
| MS.gene34399 | MS.gene96773 | PPI |
| MS.gene67216 | MS.gene96773 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96773.t1 | MTR_4g082315 | 98.148 | 216 | 4 | 0 | 1 | 216 | 1 | 216 | 2.00e-160 | 442 |
| MS.gene96773.t1 | MTR_7g011490 | 63.158 | 209 | 72 | 1 | 13 | 216 | 4 | 212 | 1.51e-98 | 285 |
| MS.gene96773.t1 | MTR_6g012770 | 64.583 | 192 | 67 | 1 | 26 | 216 | 21 | 212 | 2.37e-96 | 280 |
| MS.gene96773.t1 | MTR_5g042260 | 53.182 | 220 | 98 | 4 | 1 | 216 | 1 | 219 | 5.96e-84 | 248 |
| MS.gene96773.t1 | MTR_5g042320 | 51.351 | 222 | 101 | 4 | 1 | 216 | 3 | 223 | 9.52e-74 | 223 |
| MS.gene96773.t1 | MTR_5g042270 | 48.168 | 191 | 92 | 2 | 27 | 216 | 1 | 185 | 9.74e-61 | 188 |
| MS.gene96773.t1 | MTR_5g058140 | 44.271 | 192 | 101 | 2 | 25 | 216 | 27 | 212 | 2.93e-60 | 188 |
| MS.gene96773.t1 | MTR_2g007210 | 43.415 | 205 | 111 | 3 | 12 | 216 | 7 | 206 | 1.32e-58 | 184 |
| MS.gene96773.t1 | MTR_3g072600 | 43.810 | 210 | 109 | 4 | 12 | 216 | 12 | 217 | 1.64e-58 | 184 |
| MS.gene96773.t1 | MTR_8g088940 | 41.546 | 207 | 108 | 3 | 15 | 216 | 13 | 211 | 1.78e-53 | 171 |
| MS.gene96773.t1 | MTR_5g042320 | 50.286 | 175 | 80 | 4 | 1 | 169 | 3 | 176 | 3.50e-52 | 167 |
| MS.gene96773.t1 | MTR_8g088980 | 47.260 | 146 | 76 | 1 | 72 | 216 | 17 | 162 | 1.92e-48 | 156 |
| MS.gene96773.t1 | MTR_5g042300 | 41.803 | 122 | 57 | 1 | 95 | 216 | 41 | 148 | 8.49e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96773.t1 | AT1G26690 | 65.517 | 203 | 70 | 0 | 14 | 216 | 12 | 214 | 4.22e-103 | 297 |
| MS.gene96773.t1 | AT1G69460 | 64.532 | 203 | 72 | 0 | 14 | 216 | 12 | 214 | 1.29e-99 | 288 |
| MS.gene96773.t1 | AT1G14010 | 61.463 | 205 | 79 | 0 | 12 | 216 | 8 | 212 | 7.17e-96 | 278 |
| MS.gene96773.t1 | AT2G03290 | 63.918 | 194 | 69 | 1 | 24 | 216 | 20 | 213 | 6.71e-91 | 266 |
| MS.gene96773.t1 | AT3G29070 | 56.771 | 192 | 83 | 0 | 25 | 216 | 34 | 225 | 5.25e-80 | 239 |
| MS.gene96773.t1 | AT2G03040 | 59.864 | 147 | 58 | 1 | 24 | 169 | 20 | 166 | 1.95e-61 | 189 |
| MS.gene96773.t1 | AT1G09580 | 40.284 | 211 | 119 | 3 | 8 | 216 | 12 | 217 | 1.87e-56 | 179 |
| MS.gene96773.t1 | AT1G57620 | 39.130 | 207 | 117 | 4 | 14 | 216 | 11 | 212 | 6.33e-51 | 164 |
| MS.gene96773.t1 | AT1G21900 | 37.681 | 207 | 124 | 3 | 12 | 216 | 13 | 216 | 6.73e-50 | 162 |
| MS.gene96773.t1 | AT3G10780 | 31.019 | 216 | 139 | 3 | 8 | 216 | 5 | 217 | 1.54e-31 | 115 |
Find 39 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTAGCAGGGTTGCAACTA+TGG | 0.311427 | 4.3:-28114840 | MS.gene96773:CDS |
| TTCATTTGCTTATCAGTAGC+AGG | 0.361390 | 4.3:-28114853 | MS.gene96773:CDS |
| GGTGACGTTGACTATTGATT+TGG | 0.388694 | 4.3:-28117693 | MS.gene96773:CDS |
| GATGTCTTCTGAGATGCATT+TGG | 0.409852 | 4.3:+28118022 | None:intergenic |
| CAACCAGAACATTCTGTTGT+CGG | 0.413003 | 4.3:+28114891 | None:intergenic |
| TGACCTTTCTTAGCAACATT+GGG | 0.430307 | 4.3:+28117638 | None:intergenic |
| GGTAAAGGGTAACCCTCGTT+GGG | 0.443213 | 4.3:+28117957 | None:intergenic |
| TATGGAGATCGTGTTCAATC+TGG | 0.449834 | 4.3:-28117788 | MS.gene96773:CDS |
| GCATTTGTTGCTGCAGAAGC+TGG | 0.459925 | 4.3:-28117758 | MS.gene96773:CDS |
| CATGGAAATAACTATCACTA+TGG | 0.460188 | 4.3:-28117806 | MS.gene96773:CDS |
| ACGGTGATTCTGTGTGAATC+AGG | 0.470784 | 4.3:+28117936 | None:intergenic |
| TTCTGTGTGAATCAGGTAAA+GGG | 0.476873 | 4.3:+28117943 | None:intergenic |
| ATTCAGTGGAAGATGAAAAC+AGG | 0.491337 | 4.3:+28118075 | None:intergenic |
| GAAGACTGGTGTGGCAGCTA+AGG | 0.499136 | 4.3:-28117666 | MS.gene96773:CDS |
| AAACCGACAACAGAATGTTC+TGG | 0.503104 | 4.3:-28114894 | MS.gene96773:CDS |
| AAAAGCAATTCCATGACTGT+TGG | 0.505073 | 4.3:-28117999 | MS.gene96773:CDS |
| TTCCAGAGAGGAAGAAATGC+AGG | 0.508533 | 4.3:-28114929 | MS.gene96773:intron |
| TCATTTGCTTATCAGTAGCA+GGG | 0.514096 | 4.3:-28114852 | MS.gene96773:CDS |
| TCAATAGTCAACGTCACCTC+AGG | 0.520373 | 4.3:+28117698 | None:intergenic |
| CGTTGACTATTGATTTGGAA+TGG | 0.524274 | 4.3:-28117688 | MS.gene96773:CDS |
| TTGACCTTTCTTAGCAACAT+TGG | 0.528677 | 4.3:+28117637 | None:intergenic |
| ATTCTGTGTGAATCAGGTAA+AGG | 0.528712 | 4.3:+28117942 | None:intergenic |
| GTTTAGGTTACATCGTCTCA+TGG | 0.531885 | 4.3:-28117824 | MS.gene96773:intron |
| TGGCCCAATGTTGCTAAGAA+AGG | 0.532329 | 4.3:-28117641 | MS.gene96773:CDS |
| CTGGTGTGGCAGCTAAGGAT+TGG | 0.534178 | 4.3:-28117661 | MS.gene96773:CDS |
| AAGATTTGAGTTCAAATCTG+AGG | 0.534501 | 4.3:+28118051 | None:intergenic |
| AGATTTGAGTTCAAATCTGA+GGG | 0.538909 | 4.3:+28118052 | None:intergenic |
| ATTCACACAGAATCACCGTC+AGG | 0.545208 | 4.3:-28117932 | MS.gene96773:CDS |
| ATTGATTTGGAATGGAAGAC+TGG | 0.560840 | 4.3:-28117680 | MS.gene96773:CDS |
| TTCAAATCTGAGGGATTCAG+TGG | 0.571693 | 4.3:+28118061 | None:intergenic |
| AGGTAAAGGGTAACCCTCGT+TGG | 0.582707 | 4.3:+28117956 | None:intergenic |
| GGTGTACTTTCCAACAGTCA+TGG | 0.589902 | 4.3:+28117989 | None:intergenic |
| ACCCTCGTTGGGGTTAACGA+TGG | 0.671660 | 4.3:+28117968 | None:intergenic |
| TTCACACAGAATCACCGTCA+GGG | 0.676656 | 4.3:-28117931 | MS.gene96773:intron |
| GGCTGCTGAGAATAAACCTG+AGG | 0.691504 | 4.3:-28117714 | MS.gene96773:CDS |
| GTAAAGGGTAACCCTCGTTG+GGG | 0.701463 | 4.3:+28117958 | None:intergenic |
| CACCATCGTTAACCCCAACG+AGG | 0.704046 | 4.3:-28117970 | MS.gene96773:CDS |
| TTTGGAATGGAAGACTGGTG+TGG | 0.728474 | 4.3:-28117675 | MS.gene96773:CDS |
| ACCATCGTTAACCCCAACGA+GGG | 0.730690 | 4.3:-28117969 | MS.gene96773:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAATTTATGTTATTAAT+CGG | - | chr4.3:28116084-28116103 | MS.gene96773:intron | 10.0% |
| !!! | AATTTTGATTTTTTTTTTTC+TGG | - | chr4.3:28115082-28115101 | MS.gene96773:intron | 10.0% |
| !!! | ATTTTGATTTTTTTTTTTCT+GGG | - | chr4.3:28115083-28115102 | MS.gene96773:intron | 10.0% |
| !! | AGTAATTTATGTTATTAATC+GGG | - | chr4.3:28116085-28116104 | MS.gene96773:intron | 15.0% |
| !! | ATTATGTTATATTAGGATTT+AGG | - | chr4.3:28115782-28115801 | MS.gene96773:intron | 15.0% |
| !!! | TCTATAATATATTTTCAAGT+TGG | - | chr4.3:28115334-28115353 | MS.gene96773:intron | 15.0% |
| !! | AAAACATTCCTTACTAAATT+TGG | - | chr4.3:28115448-28115467 | MS.gene96773:intron | 20.0% |
| !! | AAACATTCCTTACTAAATTT+GGG | - | chr4.3:28115449-28115468 | MS.gene96773:intron | 20.0% |
| !! | AATAAGTAGTTCAAGTAATT+TGG | - | chr4.3:28115885-28115904 | MS.gene96773:intron | 20.0% |
| !! | ACATAATGCCAAAAAATTAA+AGG | - | chr4.3:28116921-28116940 | MS.gene96773:intron | 20.0% |
| !! | ACATTACAAATTTACCATTA+AGG | + | chr4.3:28117274-28117293 | None:intergenic | 20.0% |
| !! | ACTAGATGTATATTAAAGTA+AGG | - | chr4.3:28115415-28115434 | MS.gene96773:intron | 20.0% |
| !! | CATAATGCCAAAAAATTAAA+GGG | - | chr4.3:28116922-28116941 | MS.gene96773:intron | 20.0% |
| !! | CTAGATGTATATTAAAGTAA+GGG | - | chr4.3:28115416-28115435 | MS.gene96773:intron | 20.0% |
| !! | GTAATGTTTATTGTATTCTA+TGG | - | chr4.3:28117287-28117306 | MS.gene96773:intron | 20.0% |
| !! | TTTACATTGTAATCAAGATT+GGG | + | chr4.3:28117145-28117164 | None:intergenic | 20.0% |
| !!! | ATTCAACTGTTTTTGATTAA+TGG | - | chr4.3:28115051-28115070 | MS.gene96773:intron | 20.0% |
| !!! | ATTTTTTTTTTTCTGGGTTT+AGG | - | chr4.3:28115089-28115108 | MS.gene96773:intron | 20.0% |
| !!! | TTCAACTGTTTTTGATTAAT+GGG | - | chr4.3:28115052-28115071 | MS.gene96773:intron | 20.0% |
| !!! | TTTTACATTGTAATCAAGAT+TGG | + | chr4.3:28117146-28117165 | None:intergenic | 20.0% |
| ! | AAAAAACATCTCATCATGAA+TGG | + | chr4.3:28117820-28117839 | None:intergenic | 25.0% |
| ! | ACAAGCACAATTAATGAAAA+AGG | + | chr4.3:28116485-28116504 | None:intergenic | 25.0% |
| ! | AGAAGAGAAAGATGAAAAAA+GGG | + | chr4.3:28114825-28114844 | None:intergenic | 25.0% |
| ! | AGTTATCAATATCAAATCAG+TGG | + | chr4.3:28117434-28117453 | None:intergenic | 25.0% |
| ! | ATACTCATATCATAAGCTAT+AGG | + | chr4.3:28116038-28116057 | None:intergenic | 25.0% |
| ! | ATATCATGATTCATAAGCTA+GGG | + | chr4.3:28116970-28116989 | None:intergenic | 25.0% |
| ! | ATCTGTGTGTATTACTTAAT+AGG | - | chr4.3:28115565-28115584 | MS.gene96773:intron | 25.0% |
| ! | CTATCCTTAAAAAAACTATG+TGG | + | chr4.3:28115652-28115671 | None:intergenic | 25.0% |
| ! | CTGGATGATTATGTTATATT+AGG | - | chr4.3:28115775-28115794 | MS.gene96773:intron | 25.0% |
| ! | GTGTATCTTGATTTATTGAA+TGG | - | chr4.3:28117351-28117370 | MS.gene96773:intron | 25.0% |
| ! | TAGAAGAGAAAGATGAAAAA+AGG | + | chr4.3:28114826-28114845 | None:intergenic | 25.0% |
| ! | TATATCTACTCTTAACTCTT+TGG | - | chr4.3:28117669-28117688 | MS.gene96773:CDS | 25.0% |
| ! | TCTCTATACATCTATCTATT+TGG | + | chr4.3:28117236-28117255 | None:intergenic | 25.0% |
| ! | TGCTTCTAAGTATAATCATA+GGG | - | chr4.3:28115920-28115939 | MS.gene96773:intron | 25.0% |
| ! | TTAATTATTTGATGCTTCCT+TGG | - | chr4.3:28116505-28116524 | MS.gene96773:intron | 25.0% |
| !! | AAAGATGAAAAAAGGGTTTT+GGG | + | chr4.3:28114818-28114837 | None:intergenic | 25.0% |
| !! | AAGAAAGTCAATTTTATCAG+AGG | + | chr4.3:28117488-28117507 | None:intergenic | 25.0% |
| !! | AGAAAGTCAATTTTATCAGA+GGG | + | chr4.3:28117487-28117506 | None:intergenic | 25.0% |
| !! | ATATGTCAATGCTTTGATTT+CGG | + | chr4.3:28117936-28117955 | None:intergenic | 25.0% |
| !! | TGTGATTTGTGTATATTACT+AGG | - | chr4.3:28116557-28116576 | MS.gene96773:intron | 25.0% |
| !! | TTAAAGATTTGTAGCCTTAA+TGG | - | chr4.3:28117257-28117276 | MS.gene96773:intron | 25.0% |
| !!! | AACATACAACTTGCTTTTTT+TGG | + | chr4.3:28115965-28115984 | None:intergenic | 25.0% |
| !!! | ACTGATTTGATATTGATAAC+TGG | - | chr4.3:28117433-28117452 | MS.gene96773:intron | 25.0% |
| !!! | GGCATGTTATATTTTAATCA+TGG | - | chr4.3:28117308-28117327 | MS.gene96773:intron | 25.0% |
| !!! | GTAAAACAACTTGCTTTTTT+TGG | + | chr4.3:28116000-28116019 | None:intergenic | 25.0% |
| !!! | GTACAAACCCTTTAATTTTT+TGG | + | chr4.3:28116932-28116951 | None:intergenic | 25.0% |
| !!! | TAAAACCCATTGATTTTTTC+TGG | + | chr4.3:28116852-28116871 | None:intergenic | 25.0% |
| !!! | TATTACTTAATAGGTTGGTT+AGG | - | chr4.3:28115574-28115593 | MS.gene96773:intron | 25.0% |
| !!! | TCTTACAGATTTTTTGATCT+GGG | - | chr4.3:28115751-28115770 | MS.gene96773:intron | 25.0% |
| !!! | TCTTTGGTTTTCAATTACTT+TGG | - | chr4.3:28117685-28117704 | MS.gene96773:CDS | 25.0% |
| !!! | TGATTACATGACTTGTTTTT+GGG | - | chr4.3:28115194-28115213 | MS.gene96773:intron | 25.0% |
| !!! | TGTATATTACTAGGTTGATT+AGG | - | chr4.3:28116566-28116585 | MS.gene96773:intron | 25.0% |
| !!! | TTTTTTAAGGATAGCTGATA+TGG | - | chr4.3:28115658-28115677 | MS.gene96773:intron | 25.0% |
| ACTAACTGGTTAGATAGTTA+GGG | - | chr4.3:28117061-28117080 | MS.gene96773:intron | 30.0% | |
| ACTAGATACCAAATTAACTG+AGG | + | chr4.3:28116347-28116366 | None:intergenic | 30.0% | |
| AGCTTATGAATCATGATATG+AGG | - | chr4.3:28116971-28116990 | MS.gene96773:intron | 30.0% | |
| AGGTACAAAAGAACCTATAT+AGG | - | chr4.3:28116612-28116631 | MS.gene96773:intron | 30.0% | |
| ATTAATCGGGTAGATAGATA+GGG | - | chr4.3:28116098-28116117 | MS.gene96773:intron | 30.0% | |
| CATATCATGATTCATAAGCT+AGG | + | chr4.3:28116971-28116990 | None:intergenic | 30.0% | |
| CATGGAAATAACTATCACTA+TGG | - | chr4.3:28115123-28115142 | MS.gene96773:CDS | 30.0% | |
| CTAGATACCAAATTAACTGA+GGG | + | chr4.3:28116346-28116365 | None:intergenic | 30.0% | |
| CTAGTAACCCAAATTTAGTA+AGG | + | chr4.3:28115459-28115478 | None:intergenic | 30.0% | |
| CTTTCCTTAAAAAACTGTGT+GGG | + | chr4.3:28116691-28116710 | None:intergenic | 30.0% | |
| GAATTTGATTCAAAGCAGTT+TGG | + | chr4.3:28115035-28115054 | None:intergenic | 30.0% | |
| GGGTAAGGTACATAAATATA+TGG | + | chr4.3:28117527-28117546 | None:intergenic | 30.0% | |
| GTGATAATAGGACTTTAACA+AGG | + | chr4.3:28117621-28117640 | None:intergenic | 30.0% | |
| GTGCTTCTAAGTATAATCAT+AGG | - | chr4.3:28115919-28115938 | MS.gene96773:intron | 30.0% | |
| GTGTGTATTACTTAATAGGT+TGG | - | chr4.3:28115569-28115588 | MS.gene96773:intron | 30.0% | |
| TACAGCCAGAAAAAATCAAT+GGG | - | chr4.3:28116844-28116863 | MS.gene96773:intron | 30.0% | |
| TATCACACTCATTTGTCATT+TGG | - | chr4.3:28117635-28117654 | MS.gene96773:CDS | 30.0% | |
| TATCATGATTCATAAGCTAG+GGG | + | chr4.3:28116969-28116988 | None:intergenic | 30.0% | |
| TATTAATCGGGTAGATAGAT+AGG | - | chr4.3:28116097-28116116 | MS.gene96773:intron | 30.0% | |
| TCATATCATAAGCTATAGGA+TGG | + | chr4.3:28116034-28116053 | None:intergenic | 30.0% | |
| TGACAAATGAGTGTGATAAT+AGG | + | chr4.3:28117633-28117652 | None:intergenic | 30.0% | |
| TGGTCTAATGTTGCTAAATA+AGG | - | chr4.3:28116281-28116300 | MS.gene96773:intron | 30.0% | |
| TTAGGATTTAGGAGAATGTT+CGG | - | chr4.3:28115793-28115812 | MS.gene96773:intron | 30.0% | |
| TTTCCTTAAAAAACTGTGTG+GGG | + | chr4.3:28116690-28116709 | None:intergenic | 30.0% | |
| ! | AAGATTTGAGTTCAAATCTG+AGG | + | chr4.3:28114881-28114900 | None:intergenic | 30.0% |
| ! | ACAAGTAGTTCGAGTAATTT+TGG | - | chr4.3:28116715-28116734 | MS.gene96773:intron | 30.0% |
| ! | AGATTTGAGTTCAAATCTGA+GGG | + | chr4.3:28114880-28114899 | None:intergenic | 30.0% |
| ! | ATCACACTCATTTGTCATTT+GGG | - | chr4.3:28117636-28117655 | MS.gene96773:CDS | 30.0% |
| ! | CAAGTAGTTCGAGTAATTTT+GGG | - | chr4.3:28116716-28116735 | MS.gene96773:intron | 30.0% |
| ! | GAAAGATGAAAAAAGGGTTT+TGG | + | chr4.3:28114819-28114838 | None:intergenic | 30.0% |
| ! | TGAAAGGTACATATCACAAT+TGG | - | chr4.3:28117845-28117864 | MS.gene96773:intron | 30.0% |
| ! | TTCAGATTTGCTCCAAAATA+AGG | + | chr4.3:28117598-28117617 | None:intergenic | 30.0% |
| ! | TTGAGGAGTTATGATTTGTA+AGG | - | chr4.3:28116639-28116658 | MS.gene96773:intron | 30.0% |
| !!! | AGATGTTTTTTCTTCGTGAA+AGG | - | chr4.3:28117829-28117848 | MS.gene96773:intron | 30.0% |
| !!! | ATCACTTTTGTGCCTTATTT+TGG | - | chr4.3:28117583-28117602 | MS.gene96773:intron | 30.0% |
| !!! | GTCTTACAGATTTTTTGATC+TGG | - | chr4.3:28115750-28115769 | MS.gene96773:intron | 30.0% |
| !!! | GTGATTACATGACTTGTTTT+TGG | - | chr4.3:28115193-28115212 | MS.gene96773:intron | 30.0% |
| !!! | TCTGCCACATAGTTTTTTTA+AGG | - | chr4.3:28115645-28115664 | MS.gene96773:intron | 30.0% |
| !!! | TGTTGTTTTGTTGCTAAATC+TGG | - | chr4.3:28115367-28115386 | MS.gene96773:intron | 30.0% |
| AAAAGCAATTCCATGACTGT+TGG | - | chr4.3:28114930-28114949 | MS.gene96773:intron | 35.0% | |
| ACTCCTCAATCAACCTATAT+AGG | + | chr4.3:28116628-28116647 | None:intergenic | 35.0% | |
| AGTCACGTAGTTAGTAATTC+TGG | - | chr4.3:28116148-28116167 | MS.gene96773:intron | 35.0% | |
| ATATGAGCTGTAAGATCAGA+TGG | - | chr4.3:28116239-28116258 | MS.gene96773:intron | 35.0% | |
| ATTATTTGATGCTTCCTTGG+TGG | - | chr4.3:28116508-28116527 | MS.gene96773:intron | 35.0% | |
| ATTCACCTCATCATAAGCTA+GGG | + | chr4.3:28116894-28116913 | None:intergenic | 35.0% | |
| ATTCAGTGGAAGATGAAAAC+AGG | + | chr4.3:28114857-28114876 | None:intergenic | 35.0% | |
| ATTCTGTGTGAATCAGGTAA+AGG | + | chr4.3:28114990-28115009 | None:intergenic | 35.0% | |
| CACTAACTGGTTAGATAGTT+AGG | - | chr4.3:28117060-28117079 | MS.gene96773:intron | 35.0% | |
| CTGGCATGATTTAGTACTAT+AGG | - | chr4.3:28115386-28115405 | MS.gene96773:intron | 35.0% | |
| CTTGATTAGATGGCATTCTA+TGG | - | chr4.3:28117193-28117212 | MS.gene96773:intron | 35.0% | |
| GATCTATCCCTCAGTTAATT+TGG | - | chr4.3:28116336-28116355 | MS.gene96773:intron | 35.0% | |
| GCTTTCCTTAAAAAACTGTG+TGG | + | chr4.3:28116692-28116711 | None:intergenic | 35.0% | |
| GTACAGCCAGAAAAAATCAA+TGG | - | chr4.3:28116843-28116862 | MS.gene96773:intron | 35.0% | |
| TAAACTCCGTAGCAAAGAAA+CGG | + | chr4.3:28117548-28117567 | None:intergenic | 35.0% | |
| TAATCCTACAGAAAGCAACA+AGG | + | chr4.3:28115528-28115547 | None:intergenic | 35.0% | |
| TAGTTTACGATGTCACTAAC+TGG | - | chr4.3:28117047-28117066 | MS.gene96773:intron | 35.0% | |
| TCAGTGAAACGAATTTAGTG+AGG | + | chr4.3:28116460-28116479 | None:intergenic | 35.0% | |
| TCATTTGCTTATCAGTAGCA+GGG | - | chr4.3:28118077-28118096 | MS.gene96773:CDS | 35.0% | |
| TCTGGATTATCCGATATTGA+TGG | - | chr4.3:28116166-28116185 | MS.gene96773:intron | 35.0% | |
| TGACCTTTCTTAGCAACATT+GGG | + | chr4.3:28115294-28115313 | None:intergenic | 35.0% | |
| TGTGAGACTTCCATCAATAT+CGG | + | chr4.3:28116179-28116198 | None:intergenic | 35.0% | |
| TTCATTTGCTTATCAGTAGC+AGG | - | chr4.3:28118076-28118095 | MS.gene96773:CDS | 35.0% | |
| TTCCTTAAAAAACTGTGTGG+GGG | + | chr4.3:28116689-28116708 | None:intergenic | 35.0% | |
| TTCTGTGTGAATCAGGTAAA+GGG | + | chr4.3:28114989-28115008 | None:intergenic | 35.0% | |
| TTGACCTTTCTTAGCAACAT+TGG | + | chr4.3:28115295-28115314 | None:intergenic | 35.0% | |
| ! | GAGTTTCTTTTTCTCGAAGA+AGG | + | chr4.3:28118125-28118144 | None:intergenic | 35.0% |
| !! | ATTGATTTGGAATGGAAGAC+TGG | - | chr4.3:28115249-28115268 | MS.gene96773:intron | 35.0% |
| !! | CGTTGACTATTGATTTGGAA+TGG | - | chr4.3:28115241-28115260 | MS.gene96773:intron | 35.0% |
| !! | GAACCTATATAGGTTGATTG+AGG | - | chr4.3:28116622-28116641 | MS.gene96773:intron | 35.0% |
| !! | TTAGTTCTAGTTCCATTACC+TGG | + | chr4.3:28117773-28117792 | None:intergenic | 35.0% |
| !!! | GAAAAAAGGGTTTTGGGTTA+AGG | + | chr4.3:28114812-28114831 | None:intergenic | 35.0% |
| !!! | TCTTATTTTCCTTTCCAGAG+AGG | - | chr4.3:28117988-28118007 | MS.gene96773:CDS | 35.0% |
| AAACCGACAACAGAATGTTC+TGG | - | chr4.3:28118035-28118054 | MS.gene96773:CDS | 40.0% | |
| AAACTCCGTAGCAAAGAAAC+GGG | + | chr4.3:28117547-28117566 | None:intergenic | 40.0% | |
| AAGCTATATCCCACTAAGAG+GGG | + | chr4.3:28116804-28116823 | None:intergenic | 40.0% | |
| AAGGCACAAAAGTGATATCC+AGG | + | chr4.3:28117579-28117598 | None:intergenic | 40.0% | |
| ACGGAGTTTACTATATTCCC+TGG | - | chr4.3:28117558-28117577 | MS.gene96773:intron | 40.0% | |
| AGATGGCATTCTATGGTAGT+AGG | - | chr4.3:28117200-28117219 | MS.gene96773:intron | 40.0% | |
| AGGCACAAAAGTGATATCCA+GGG | + | chr4.3:28117578-28117597 | None:intergenic | 40.0% | |
| AGGTACATATCACAATTGGC+TGG | - | chr4.3:28117849-28117868 | MS.gene96773:intron | 40.0% | |
| ATATCCCCTAGCTTATGATG+AGG | - | chr4.3:28116886-28116905 | MS.gene96773:intron | 40.0% | |
| ATTGTTGATGCGTGACTGTA+TGG | + | chr4.3:28117113-28117132 | None:intergenic | 40.0% | |
| CAACCAGAACATTCTGTTGT+CGG | + | chr4.3:28118041-28118060 | None:intergenic | 40.0% | |
| CAAGCTATATCCCACTAAGA+GGG | + | chr4.3:28116805-28116824 | None:intergenic | 40.0% | |
| CATTCACCTCATCATAAGCT+AGG | + | chr4.3:28116895-28116914 | None:intergenic | 40.0% | |
| CTGATCTGAGAATAACTGTG+TGG | - | chr4.3:28115682-28115701 | MS.gene96773:intron | 40.0% | |
| GACCAAGTAGTCAACAAATC+TGG | + | chr4.3:28116266-28116285 | None:intergenic | 40.0% | |
| GATGGCATTCTATGGTAGTA+GGG | - | chr4.3:28117201-28117220 | MS.gene96773:intron | 40.0% | |
| GCTGTCTGATCTTGATTAGA+TGG | - | chr4.3:28117183-28117202 | MS.gene96773:intron | 40.0% | |
| TAATCATGCAGAAACCACCA+AGG | + | chr4.3:28116525-28116544 | None:intergenic | 40.0% | |
| TATGGAGATCGTGTTCAATC+TGG | - | chr4.3:28115141-28115160 | MS.gene96773:CDS | 40.0% | |
| TGACTGTATGGATTCAGTGA+TGG | + | chr4.3:28117101-28117120 | None:intergenic | 40.0% | |
| TGATTTCATTCGTGTGTTCC+AGG | - | chr4.3:28117752-28117771 | MS.gene96773:CDS | 40.0% | |
| TGGTTAGATAGTTAGGGATC+TGG | - | chr4.3:28117067-28117086 | MS.gene96773:intron | 40.0% | |
| TTACTAACTACGTGACTGCA+AGG | + | chr4.3:28116145-28116164 | None:intergenic | 40.0% | |
| TTCAAATCTGAGGGATTCAG+TGG | + | chr4.3:28114871-28114890 | None:intergenic | 40.0% | |
| TTCACCTCATCATAAGCTAG+GGG | + | chr4.3:28116893-28116912 | None:intergenic | 40.0% | |
| TTCTATGGTAGTAGGGAATC+TGG | - | chr4.3:28117208-28117227 | MS.gene96773:intron | 40.0% | |
| ! | CAGTCACGCATCAACAATTT+TGG | - | chr4.3:28117115-28117134 | MS.gene96773:intron | 40.0% |
| ! | CTGGCAGTGATTTCTTTTGT+TGG | - | chr4.3:28117452-28117471 | MS.gene96773:intron | 40.0% |
| ! | CTTTTAGTCTGCTGTAGGAA+AGG | - | chr4.3:28116592-28116611 | MS.gene96773:intron | 40.0% |
| ! | GGTGACGTTGACTATTGATT+TGG | - | chr4.3:28115236-28115255 | MS.gene96773:intron | 40.0% |
| ! | GGTTTCTTTTAGTCTGCTGT+AGG | - | chr4.3:28116587-28116606 | MS.gene96773:intron | 40.0% |
| ! | GTTTAGGTTACATCGTCTCA+TGG | - | chr4.3:28115105-28115124 | MS.gene96773:CDS | 40.0% |
| !! | GATGTCTTCTGAGATGCATT+TGG | + | chr4.3:28114910-28114929 | None:intergenic | 40.0% |
| !! | GTCCAGATTTGTTGACTACT+TGG | - | chr4.3:28116261-28116280 | MS.gene96773:intron | 40.0% |
| !! | GTTTCCTTGTTGCTTTCTGT+AGG | - | chr4.3:28115521-28115540 | MS.gene96773:intron | 40.0% |
| !!! | CAGATTTTTTGATCTGGGTC+TGG | - | chr4.3:28115756-28115775 | MS.gene96773:intron | 40.0% |
| !!! | TTCCCCCACACAGTTTTTTA+AGG | - | chr4.3:28116684-28116703 | MS.gene96773:intron | 40.0% |
| ACGGTGATTCTGTGTGAATC+AGG | + | chr4.3:28114996-28115015 | None:intergenic | 45.0% | |
| ATTCACACAGAATCACCGTC+AGG | - | chr4.3:28114997-28115016 | MS.gene96773:intron | 45.0% | |
| CATTCGTGTGTTCCAGGTAA+TGG | - | chr4.3:28117758-28117777 | MS.gene96773:CDS | 45.0% | |
| CCAAGCTATATCCCACTAAG+AGG | + | chr4.3:28116806-28116825 | None:intergenic | 45.0% | |
| CCTCTTAGTGGGATATAGCT+TGG | - | chr4.3:28116803-28116822 | MS.gene96773:intron | 45.0% | |
| CCTTACCCGTTTCTTTGCTA+CGG | - | chr4.3:28117539-28117558 | MS.gene96773:intron | 45.0% | |
| GGTGTACTTTCCAACAGTCA+TGG | + | chr4.3:28114943-28114962 | None:intergenic | 45.0% | |
| GTCTCCTACGTGAGATTTAC+TGG | - | chr4.3:28116999-28117018 | MS.gene96773:intron | 45.0% | |
| TAGGGATCTTTCTGCCATTG+TGG | - | chr4.3:28116116-28116135 | MS.gene96773:intron | 45.0% | |
| TATATCCCACTAAGAGGGGT+CGG | + | chr4.3:28116800-28116819 | None:intergenic | 45.0% | |
| TCAATAGTCAACGTCACCTC+AGG | + | chr4.3:28115234-28115253 | None:intergenic | 45.0% | |
| TCAGCCAGTAAATCTCACGT+AGG | + | chr4.3:28117006-28117025 | None:intergenic | 45.0% | |
| TGACTGCAAGGATTCCACAA+TGG | + | chr4.3:28116133-28116152 | None:intergenic | 45.0% | |
| TGGCCCAATGTTGCTAAGAA+AGG | - | chr4.3:28115288-28115307 | MS.gene96773:intron | 45.0% | |
| TGTATGGATTCAGTGATGGC+AGG | + | chr4.3:28117097-28117116 | None:intergenic | 45.0% | |
| TGTGGCATTTGTGTCTCTGT+CGG | - | chr4.3:28115700-28115719 | MS.gene96773:intron | 45.0% | |
| TTAGGAGAATGTTCGGTCTC+AGG | - | chr4.3:28115800-28115819 | MS.gene96773:intron | 45.0% | |
| TTCACACAGAATCACCGTCA+GGG | - | chr4.3:28114998-28115017 | MS.gene96773:intron | 45.0% | |
| TTCCAGAGAGGAAGAAATGC+AGG | - | chr4.3:28118000-28118019 | MS.gene96773:CDS | 45.0% | |
| ! | CTTTTCTGCAGCAGACTAGA+AGG | + | chr4.3:28115602-28115621 | None:intergenic | 45.0% |
| ! | GCATTTCTTCCTCTCTGGAA+AGG | + | chr4.3:28118000-28118019 | None:intergenic | 45.0% |
| ! | TGGACTTTTGCTTACCCTGA+CGG | + | chr4.3:28115015-28115034 | None:intergenic | 45.0% |
| ! | TTTGGAATGGAAGACTGGTG+TGG | - | chr4.3:28115254-28115273 | MS.gene96773:intron | 45.0% |
| ACCATCGTTAACCCCAACGA+GGG | - | chr4.3:28114960-28114979 | MS.gene96773:intron | 50.0% | |
| AGGTAAAGGGTAACCCTCGT+TGG | + | chr4.3:28114976-28114995 | None:intergenic | 50.0% | |
| CAGTAGCAGGGTTGCAACTA+TGG | - | chr4.3:28118089-28118108 | MS.gene96773:CDS | 50.0% | |
| CCGTAGCAAAGAAACGGGTA+AGG | + | chr4.3:28117542-28117561 | None:intergenic | 50.0% | |
| CTCCTGCATTTCTTCCTCTC+TGG | + | chr4.3:28118005-28118024 | None:intergenic | 50.0% | |
| GGCTGCTGAGAATAAACCTG+AGG | - | chr4.3:28115215-28115234 | MS.gene96773:intron | 50.0% | |
| GGTAAAGGGTAACCCTCGTT+GGG | + | chr4.3:28114975-28114994 | None:intergenic | 50.0% | |
| GTAAAGGGTAACCCTCGTTG+GGG | + | chr4.3:28114974-28114993 | None:intergenic | 50.0% | |
| GTGGCATTTGTGTCTCTGTC+GGG | - | chr4.3:28115701-28115720 | MS.gene96773:intron | 50.0% | |
| ! | GCATTTGTTGCTGCAGAAGC+TGG | - | chr4.3:28115171-28115190 | MS.gene96773:intron | 50.0% |
| ! | GTCTCTGTCGGGATTTTGTG+AGG | - | chr4.3:28115712-28115731 | MS.gene96773:intron | 50.0% |
| ! | TTTTGTGAGGTCGTGAGGCT+AGG | - | chr4.3:28115725-28115744 | MS.gene96773:intron | 50.0% |
| ACCCTCGTTGGGGTTAACGA+TGG | + | chr4.3:28114964-28114983 | None:intergenic | 55.0% | |
| ACTAAGAGGGGTCGGCTACA+GGG | + | chr4.3:28116792-28116811 | None:intergenic | 55.0% | |
| CACCATCGTTAACCCCAACG+AGG | - | chr4.3:28114959-28114978 | MS.gene96773:intron | 55.0% | |
| CTGGTGTGGCAGCTAAGGAT+TGG | - | chr4.3:28115268-28115287 | MS.gene96773:intron | 55.0% | |
| GAAGACTGGTGTGGCAGCTA+AGG | - | chr4.3:28115263-28115282 | MS.gene96773:intron | 55.0% | |
| TGTAGCCGACCCCTCTTAGT+GGG | - | chr4.3:28116792-28116811 | MS.gene96773:intron | 55.0% | |
| ! | CGGGATTTTGTGAGGTCGTG+AGG | - | chr4.3:28115720-28115739 | MS.gene96773:intron | 55.0% |
| !! | TTCGGTCTCAGGAGTGCTTC+AGG | - | chr4.3:28115811-28115830 | MS.gene96773:intron | 55.0% |
| CACTAAGAGGGGTCGGCTAC+AGG | + | chr4.3:28116793-28116812 | None:intergenic | 60.0% | |
| CTGTAGCCGACCCCTCTTAG+TGG | - | chr4.3:28116791-28116810 | MS.gene96773:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 28114801 | 28118150 | 28114801 | ID=MS.gene96773 |
| chr4.3 | mRNA | 28114801 | 28118150 | 28114801 | ID=MS.gene96773.t1;Parent=MS.gene96773 |
| chr4.3 | exon | 28117932 | 28118150 | 28117932 | ID=MS.gene96773.t1.exon1;Parent=MS.gene96773.t1 |
| chr4.3 | CDS | 28117932 | 28118150 | 28117932 | ID=cds.MS.gene96773.t1;Parent=MS.gene96773.t1 |
| chr4.3 | exon | 28117631 | 28117840 | 28117631 | ID=MS.gene96773.t1.exon2;Parent=MS.gene96773.t1 |
| chr4.3 | CDS | 28117631 | 28117840 | 28117631 | ID=cds.MS.gene96773.t1;Parent=MS.gene96773.t1 |
| chr4.3 | exon | 28115101 | 28115177 | 28115101 | ID=MS.gene96773.t1.exon3;Parent=MS.gene96773.t1 |
| chr4.3 | CDS | 28115101 | 28115177 | 28115101 | ID=cds.MS.gene96773.t1;Parent=MS.gene96773.t1 |
| chr4.3 | exon | 28114801 | 28114945 | 28114801 | ID=MS.gene96773.t1.exon4;Parent=MS.gene96773.t1 |
| chr4.3 | CDS | 28114801 | 28114945 | 28114801 | ID=cds.MS.gene96773.t1;Parent=MS.gene96773.t1 |
| Gene Sequence |
| Protein sequence |
