Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006810.t1 | XP_013456763.1 | 98.2 | 169 | 3 | 0 | 1 | 169 | 48 | 216 | 6.90E-91 | 343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006810.t1 | Q9LQY3 | 65.7 | 169 | 58 | 0 | 1 | 169 | 46 | 214 | 6.1e-64 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006810.t1 | I3T547 | 98.2 | 169 | 3 | 0 | 1 | 169 | 48 | 216 | 5.0e-91 | 343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006810 | MS.gene96773 | PPI |
| MS.gene002097 | MS.gene006810 | PPI |
| MS.gene34399 | MS.gene006810 | PPI |
| MS.gene27948 | MS.gene006810 | PPI |
| MS.gene37690 | MS.gene006810 | PPI |
| MS.gene006392 | MS.gene006810 | PPI |
| MS.gene006810 | MS.gene030925 | PPI |
| MS.gene006810 | MS.gene031477 | PPI |
| MS.gene47907 | MS.gene006810 | PPI |
| MS.gene006810 | MS.gene47907 | PPI |
| MS.gene006810 | MS.gene072012 | PPI |
| MS.gene006810 | MS.gene67216 | PPI |
| MS.gene006810 | MS.gene56516 | PPI |
| MS.gene047149 | MS.gene006810 | PPI |
| MS.gene070963 | MS.gene006810 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006810.t1 | MTR_4g082315 | 98.225 | 169 | 3 | 0 | 1 | 169 | 48 | 216 | 1.45e-126 | 354 |
| MS.gene006810.t1 | MTR_7g011490 | 66.864 | 169 | 56 | 0 | 1 | 169 | 44 | 212 | 1.58e-87 | 255 |
| MS.gene006810.t1 | MTR_6g012770 | 64.706 | 170 | 59 | 1 | 1 | 169 | 43 | 212 | 6.52e-86 | 251 |
| MS.gene006810.t1 | MTR_5g042260 | 54.386 | 171 | 76 | 2 | 1 | 169 | 49 | 219 | 5.65e-67 | 203 |
| MS.gene006810.t1 | MTR_5g042320 | 54.386 | 171 | 75 | 2 | 1 | 169 | 54 | 223 | 4.24e-63 | 194 |
| MS.gene006810.t1 | MTR_5g042270 | 50.588 | 170 | 77 | 2 | 1 | 169 | 22 | 185 | 6.11e-55 | 172 |
| MS.gene006810.t1 | MTR_5g058140 | 47.651 | 149 | 78 | 0 | 21 | 169 | 64 | 212 | 3.59e-53 | 168 |
| MS.gene006810.t1 | MTR_3g072600 | 45.732 | 164 | 85 | 2 | 6 | 169 | 58 | 217 | 8.73e-51 | 162 |
| MS.gene006810.t1 | MTR_2g007210 | 46.939 | 147 | 78 | 0 | 23 | 169 | 60 | 206 | 2.56e-50 | 160 |
| MS.gene006810.t1 | MTR_8g088940 | 45.860 | 157 | 80 | 2 | 18 | 169 | 55 | 211 | 1.75e-49 | 159 |
| MS.gene006810.t1 | MTR_8g088980 | 47.260 | 146 | 76 | 1 | 25 | 169 | 17 | 162 | 9.11e-49 | 155 |
| MS.gene006810.t1 | MTR_5g042320 | 54.032 | 124 | 54 | 2 | 1 | 122 | 54 | 176 | 2.77e-41 | 137 |
| MS.gene006810.t1 | MTR_5g042300 | 41.803 | 122 | 57 | 1 | 48 | 169 | 41 | 148 | 2.91e-29 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006810.t1 | AT1G26690 | 65.680 | 169 | 58 | 0 | 1 | 169 | 46 | 214 | 6.96e-88 | 256 |
| MS.gene006810.t1 | AT1G69460 | 65.680 | 169 | 58 | 0 | 1 | 169 | 46 | 214 | 2.96e-85 | 249 |
| MS.gene006810.t1 | AT1G14010 | 63.905 | 169 | 61 | 0 | 1 | 169 | 44 | 212 | 1.20e-83 | 245 |
| MS.gene006810.t1 | AT2G03290 | 64.118 | 170 | 60 | 1 | 1 | 169 | 44 | 213 | 5.40e-80 | 236 |
| MS.gene006810.t1 | AT3G29070 | 56.805 | 169 | 73 | 0 | 1 | 169 | 57 | 225 | 7.69e-70 | 211 |
| MS.gene006810.t1 | AT2G03040 | 59.350 | 123 | 49 | 1 | 1 | 122 | 44 | 166 | 1.84e-50 | 160 |
| MS.gene006810.t1 | AT1G09580 | 45.946 | 148 | 79 | 1 | 23 | 169 | 70 | 217 | 3.24e-49 | 158 |
| MS.gene006810.t1 | AT1G57620 | 44.595 | 148 | 81 | 1 | 23 | 169 | 65 | 212 | 4.68e-45 | 147 |
| MS.gene006810.t1 | AT1G21900 | 42.568 | 148 | 84 | 1 | 23 | 169 | 69 | 216 | 3.54e-43 | 143 |
| MS.gene006810.t1 | AT3G10780 | 36.242 | 149 | 91 | 1 | 25 | 169 | 69 | 217 | 6.55e-29 | 106 |
Find 35 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTAGCAGGGTTGCAACTA+TGG | 0.311427 | 4.1:-24928992 | MS.gene006810:CDS |
| GGTGACGTTGACTATTGATT+TGG | 0.388694 | 4.1:-24931896 | MS.gene006810:CDS |
| TTCATATGCTTATCAGTAGC+AGG | 0.390679 | 4.1:-24929005 | MS.gene006810:CDS |
| GGTAAAGGGTAACCCTCGTT+GGG | 0.404929 | 4.1:+24932159 | None:intergenic |
| CAACCAGAACATTCTGTTGT+CGG | 0.413003 | 4.1:+24929043 | None:intergenic |
| GACGGTGATTCTGTGTGAAT+CGG | 0.426886 | 4.1:+24932137 | None:intergenic |
| TGACCTTTCTTAGCAACATT+GGG | 0.430307 | 4.1:+24931841 | None:intergenic |
| TATGGAGATCGTGTTCAATC+TGG | 0.449834 | 4.1:-24931991 | MS.gene006810:CDS |
| GCATTTGTTGCTGCAGAAGC+TGG | 0.459925 | 4.1:-24931961 | MS.gene006810:CDS |
| CATGGAAATAACTATCACTA+TGG | 0.460188 | 4.1:-24932009 | MS.gene006810:CDS |
| TTCTGTGTGAATCGGGTAAA+GGG | 0.479747 | 4.1:+24932145 | None:intergenic |
| GAAGACTGGTGTGGCAGCTA+AGG | 0.499136 | 4.1:-24931869 | MS.gene006810:CDS |
| ATTCTGTGTGAATCGGGTAA+AGG | 0.500485 | 4.1:+24932144 | None:intergenic |
| AAACCGACAACAGAATGTTC+TGG | 0.503104 | 4.1:-24929046 | MS.gene006810:CDS |
| TTCCAGAGAGGAAGAAATGC+AGG | 0.508533 | 4.1:-24929081 | MS.gene006810:intron |
| ACGGTGATTCTGTGTGAATC+GGG | 0.519392 | 4.1:+24932138 | None:intergenic |
| TCAATAGTCAACGTCACCTC+AGG | 0.520373 | 4.1:+24931901 | None:intergenic |
| CGTTGACTATTGATTTGGAA+TGG | 0.524274 | 4.1:-24931891 | MS.gene006810:CDS |
| AAAAGCAATTCCATGACAGT+TGG | 0.528569 | 4.1:-24932201 | None:intergenic |
| TTGACCTTTCTTAGCAACAT+TGG | 0.528677 | 4.1:+24931840 | None:intergenic |
| GTTTAGGTTACATCGTCTCA+TGG | 0.531885 | 4.1:-24932027 | MS.gene006810:intron |
| TGGCCCAATGTTGCTAAGAA+AGG | 0.532329 | 4.1:-24931844 | MS.gene006810:CDS |
| CTGGTGTGGCAGCTAAGGAT+TGG | 0.534178 | 4.1:-24931864 | MS.gene006810:CDS |
| GGGTAAAGGGTAACCCTCGT+TGG | 0.534307 | 4.1:+24932158 | None:intergenic |
| ATTCACACAGAATCACCGTC+AGG | 0.545208 | 4.1:-24932134 | MS.gene006810:CDS |
| ATTGATTTGGAATGGAAGAC+TGG | 0.560840 | 4.1:-24931883 | MS.gene006810:CDS |
| GGTGTACTTTCCAACTGTCA+TGG | 0.573214 | 4.1:+24932191 | None:intergenic |
| TCATATGCTTATCAGTAGCA+GGG | 0.584772 | 4.1:-24929004 | MS.gene006810:CDS |
| TTCACACAGAATCACCGTCA+GGG | 0.665282 | 4.1:-24932133 | MS.gene006810:intron |
| ACCCTCGTTGGGGTTAACGA+TGG | 0.671660 | 4.1:+24932170 | None:intergenic |
| GTAAAGGGTAACCCTCGTTG+GGG | 0.688463 | 4.1:+24932160 | None:intergenic |
| GGCTGCTGAGAATAAACCTG+AGG | 0.691504 | 4.1:-24931917 | MS.gene006810:CDS |
| CACCATCGTTAACCCCAACG+AGG | 0.704046 | 4.1:-24932172 | MS.gene006810:CDS |
| TTTGGAATGGAAGACTGGTG+TGG | 0.728474 | 4.1:-24931878 | MS.gene006810:CDS |
| ACCATCGTTAACCCCAACGA+GGG | 0.730690 | 4.1:-24932171 | MS.gene006810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAATTTATGTTATTAAT+CGG | - | chr4.1:24930148-24930167 | MS.gene006810:intron | 10.0% |
| !!! | AAATTTTGATTTTTTTTTTC+TGG | - | chr4.1:24929092-24929111 | MS.gene006810:intron | 10.0% |
| !!! | AATTTTGATTTTTTTTTTCT+GGG | - | chr4.1:24929093-24929112 | MS.gene006810:intron | 10.0% |
| !! | AGTAATTTATGTTATTAATC+GGG | - | chr4.1:24930149-24930168 | MS.gene006810:intron | 15.0% |
| !! | ATTATGTTATATTAGGATTT+AGG | - | chr4.1:24929792-24929811 | MS.gene006810:intron | 15.0% |
| !!! | TCTATAATATATTTTCAAGT+TGG | - | chr4.1:24929344-24929363 | MS.gene006810:intron | 15.0% |
| !! | AATAAGTAGTTCAAGTAATT+TGG | - | chr4.1:24929895-24929914 | MS.gene006810:intron | 20.0% |
| !! | ACATAATGCCAAAAAATTAA+AGG | - | chr4.1:24930985-24931004 | MS.gene006810:intron | 20.0% |
| !! | ACATTACAAATTTACCATTA+AGG | + | chr4.1:24931338-24931357 | None:intergenic | 20.0% |
| !! | ACTAGATGTATATTAAAGTA+AGG | - | chr4.1:24929425-24929444 | MS.gene006810:intron | 20.0% |
| !! | CATAATGCCAAAAAATTAAA+GGG | - | chr4.1:24930986-24931005 | MS.gene006810:intron | 20.0% |
| !! | CTAGATGTATATTAAAGTAA+GGG | - | chr4.1:24929426-24929445 | MS.gene006810:intron | 20.0% |
| !! | GTAATGTTTATTGTATTCTA+TGG | - | chr4.1:24931351-24931370 | MS.gene006810:intron | 20.0% |
| !! | TTTACATTGTAATCAAGATT+GGG | + | chr4.1:24931209-24931228 | None:intergenic | 20.0% |
| !!! | ATTCAACTGTTTTTGATTAA+TGG | - | chr4.1:24929062-24929081 | MS.gene006810:CDS | 20.0% |
| !!! | TTCAACTGTTTTTGATTAAT+GGG | - | chr4.1:24929063-24929082 | MS.gene006810:CDS | 20.0% |
| !!! | TTTTACATTGTAATCAAGAT+TGG | + | chr4.1:24931210-24931229 | None:intergenic | 20.0% |
| ! | AAAACACTCCTTACTAAATT+TGG | - | chr4.1:24929458-24929477 | MS.gene006810:intron | 25.0% |
| ! | AAACACTCCTTACTAAATTT+GGG | - | chr4.1:24929459-24929478 | MS.gene006810:intron | 25.0% |
| ! | ACAAGCACAATTAATGAAAA+AGG | + | chr4.1:24930549-24930568 | None:intergenic | 25.0% |
| ! | AGTTATCAATATCAAATCAG+TGG | + | chr4.1:24931498-24931517 | None:intergenic | 25.0% |
| ! | ATACTCATATCATAAGCTAT+AGG | + | chr4.1:24930083-24930102 | None:intergenic | 25.0% |
| ! | ATATCATGATTCATAAGCTA+GGG | + | chr4.1:24931034-24931053 | None:intergenic | 25.0% |
| ! | ATCTGTGTGTATTACTTAAT+AGG | - | chr4.1:24929575-24929594 | MS.gene006810:intron | 25.0% |
| ! | CTATCCTTAAAAAAACTATG+TGG | + | chr4.1:24929662-24929681 | None:intergenic | 25.0% |
| ! | CTGGATGATTATGTTATATT+AGG | - | chr4.1:24929785-24929804 | MS.gene006810:intron | 25.0% |
| ! | GTGTATCTTGATTTATTGAA+TGG | - | chr4.1:24931415-24931434 | MS.gene006810:intron | 25.0% |
| ! | TATATCTACTCTTAACTCTT+TGG | - | chr4.1:24931732-24931751 | MS.gene006810:intron | 25.0% |
| ! | TCTCTATACATCTATCTATT+TGG | + | chr4.1:24931300-24931319 | None:intergenic | 25.0% |
| ! | TGAAGCTCATTATTTATGAT+TGG | - | chr4.1:24930123-24930142 | MS.gene006810:intron | 25.0% |
| ! | TGCTTCTAAGTATAATCATA+GGG | - | chr4.1:24929930-24929949 | MS.gene006810:intron | 25.0% |
| ! | TTAATTATTTGATGCTTCCT+TGG | - | chr4.1:24930569-24930588 | MS.gene006810:intron | 25.0% |
| !! | AAGAAAGTCAATTTTATCAG+AGG | + | chr4.1:24931552-24931571 | None:intergenic | 25.0% |
| !! | AGAAAGTCAATTTTATCAGA+GGG | + | chr4.1:24931551-24931570 | None:intergenic | 25.0% |
| !! | ATATGTCAATGCTTTGATTT+CGG | + | chr4.1:24931997-24932016 | None:intergenic | 25.0% |
| !! | TGTGATTTGTGTATATTACT+AGG | - | chr4.1:24930621-24930640 | MS.gene006810:intron | 25.0% |
| !! | TTAAAGATTTGTAGCCTTAA+TGG | - | chr4.1:24931321-24931340 | MS.gene006810:intron | 25.0% |
| !!! | AACATACAACTTGCTTTTTT+TGG | + | chr4.1:24929975-24929994 | None:intergenic | 25.0% |
| !!! | ACTGATTTGATATTGATAAC+TGG | - | chr4.1:24931497-24931516 | MS.gene006810:intron | 25.0% |
| !!! | GATTTTTTTTTTCTGGGTTT+AGG | - | chr4.1:24929099-24929118 | MS.gene006810:intron | 25.0% |
| !!! | GGCATGTTATATTTTAATCA+TGG | - | chr4.1:24931372-24931391 | MS.gene006810:intron | 25.0% |
| !!! | GTAAAACAACTTGCTTTTTT+TGG | + | chr4.1:24930045-24930064 | None:intergenic | 25.0% |
| !!! | GTACAAACCCTTTAATTTTT+TGG | + | chr4.1:24930996-24931015 | None:intergenic | 25.0% |
| !!! | TAAAACCCATTGATTTTTTC+TGG | + | chr4.1:24930916-24930935 | None:intergenic | 25.0% |
| !!! | TATTACTTAATAGGTTGGTT+AGG | - | chr4.1:24929584-24929603 | MS.gene006810:intron | 25.0% |
| !!! | TCTTTGGTTTTCAATTACTT+TGG | - | chr4.1:24931748-24931767 | MS.gene006810:intron | 25.0% |
| !!! | TGATTACATGACTTGTTTTT+GGG | - | chr4.1:24929204-24929223 | MS.gene006810:intron | 25.0% |
| !!! | TGTATATTACTAGGTTGATT+AGG | - | chr4.1:24930630-24930649 | MS.gene006810:intron | 25.0% |
| !!! | TTTTTTAAGGATAGCTGATA+TGG | - | chr4.1:24929668-24929687 | MS.gene006810:intron | 25.0% |
| AAAAAACATCTCGTCATGAA+TGG | + | chr4.1:24931881-24931900 | None:intergenic | 30.0% | |
| ACTAACTGGTTAGATAGTTA+GGG | - | chr4.1:24931125-24931144 | MS.gene006810:intron | 30.0% | |
| ACTAGATACCAAATTAACTG+AGG | + | chr4.1:24930411-24930430 | None:intergenic | 30.0% | |
| AGCTTATGAATCATGATATG+AGG | - | chr4.1:24931035-24931054 | MS.gene006810:intron | 30.0% | |
| AGGTACAAAAGAACCTATAT+AGG | - | chr4.1:24930676-24930695 | MS.gene006810:intron | 30.0% | |
| ATTAATCGGGTAGATAGATA+GGG | - | chr4.1:24930162-24930181 | MS.gene006810:intron | 30.0% | |
| CATATCATGATTCATAAGCT+AGG | + | chr4.1:24931035-24931054 | None:intergenic | 30.0% | |
| CATGGAAATAACTATCACTA+TGG | - | chr4.1:24929133-24929152 | MS.gene006810:intron | 30.0% | |
| CTAGATACCAAATTAACTGA+GGG | + | chr4.1:24930410-24930429 | None:intergenic | 30.0% | |
| CTAGTAACCCAAATTTAGTA+AGG | + | chr4.1:24929469-24929488 | None:intergenic | 30.0% | |
| CTTTCCTTAAAAAACTGTGT+GGG | + | chr4.1:24930755-24930774 | None:intergenic | 30.0% | |
| GAATATGATTCAAAGCAGTT+TGG | + | chr4.1:24929046-24929065 | None:intergenic | 30.0% | |
| GGGTAAGGTACATAAATATA+TGG | + | chr4.1:24931591-24931610 | None:intergenic | 30.0% | |
| GTGATAATAGGACTTTAACA+AGG | + | chr4.1:24931684-24931703 | None:intergenic | 30.0% | |
| GTGCTTCTAAGTATAATCAT+AGG | - | chr4.1:24929929-24929948 | MS.gene006810:intron | 30.0% | |
| GTGTGTATTACTTAATAGGT+TGG | - | chr4.1:24929579-24929598 | MS.gene006810:intron | 30.0% | |
| TACAGCCAGAAAAAATCAAT+GGG | - | chr4.1:24930908-24930927 | MS.gene006810:intron | 30.0% | |
| TATCACACTCATTTGTCATT+TGG | - | chr4.1:24931698-24931717 | MS.gene006810:intron | 30.0% | |
| TATCATGATTCATAAGCTAG+GGG | + | chr4.1:24931033-24931052 | None:intergenic | 30.0% | |
| TATTAATCGGGTAGATAGAT+AGG | - | chr4.1:24930161-24930180 | MS.gene006810:intron | 30.0% | |
| TCATATCATAAGCTATAGGA+TGG | + | chr4.1:24930079-24930098 | None:intergenic | 30.0% | |
| TGACAAATGAGTGTGATAAT+AGG | + | chr4.1:24931696-24931715 | None:intergenic | 30.0% | |
| TGGTCTAATGTTGCTAAATA+AGG | - | chr4.1:24930345-24930364 | MS.gene006810:intron | 30.0% | |
| TTAGGATTTAGGAGAATGTT+CGG | - | chr4.1:24929803-24929822 | MS.gene006810:intron | 30.0% | |
| TTTCCTTAAAAAACTGTGTG+GGG | + | chr4.1:24930754-24930773 | None:intergenic | 30.0% | |
| ! | ACAAGTAGTTCGAGTAATTT+TGG | - | chr4.1:24930779-24930798 | MS.gene006810:intron | 30.0% |
| ! | ATCACACTCATTTGTCATTT+GGG | - | chr4.1:24931699-24931718 | MS.gene006810:intron | 30.0% |
| ! | CAAGTAGTTCGAGTAATTTT+GGG | - | chr4.1:24930780-24930799 | MS.gene006810:intron | 30.0% |
| ! | TGAAAGGTACATATCACAAT+TGG | - | chr4.1:24931906-24931925 | MS.gene006810:CDS | 30.0% |
| ! | TTCAGATTTGCTCCAAAATA+AGG | + | chr4.1:24931661-24931680 | None:intergenic | 30.0% |
| ! | TTGAGGAGTTATGATTTGTA+AGG | - | chr4.1:24930703-24930722 | MS.gene006810:intron | 30.0% |
| !!! | AGATGTTTTTTCTTCGTGAA+AGG | - | chr4.1:24931890-24931909 | MS.gene006810:CDS | 30.0% |
| !!! | ATCACTTTTGTGCCTTATTT+TGG | - | chr4.1:24931646-24931665 | MS.gene006810:intron | 30.0% |
| !!! | GTCTTACAGATTTTTTGATC+TGG | - | chr4.1:24929760-24929779 | MS.gene006810:intron | 30.0% |
| !!! | GTGATTACATGACTTGTTTT+TGG | - | chr4.1:24929203-24929222 | MS.gene006810:intron | 30.0% |
| !!! | TCTGCCACATAGTTTTTTTA+AGG | - | chr4.1:24929655-24929674 | MS.gene006810:intron | 30.0% |
| !!! | TGTTGTTTTGTTGCTAAATC+TGG | - | chr4.1:24929377-24929396 | MS.gene006810:intron | 30.0% |
| ACTCCTCAATCAACCTATAT+AGG | + | chr4.1:24930692-24930711 | None:intergenic | 35.0% | |
| AGTCACGTAGTTAGTAATTC+TGG | - | chr4.1:24930212-24930231 | MS.gene006810:intron | 35.0% | |
| ATATGAGCTGTAAGATCAGA+TGG | - | chr4.1:24930303-24930322 | MS.gene006810:intron | 35.0% | |
| ATTATTTGATGCTTCCTTGG+TGG | - | chr4.1:24930572-24930591 | MS.gene006810:intron | 35.0% | |
| ATTCACCTCATCATAAGCTA+GGG | + | chr4.1:24930958-24930977 | None:intergenic | 35.0% | |
| CACTAACTGGTTAGATAGTT+AGG | - | chr4.1:24931124-24931143 | MS.gene006810:intron | 35.0% | |
| CTGGCATGATTTAGTACTAT+AGG | - | chr4.1:24929396-24929415 | MS.gene006810:intron | 35.0% | |
| CTTGATTAGATGGCATTCTA+TGG | - | chr4.1:24931257-24931276 | MS.gene006810:intron | 35.0% | |
| GACCAAGTAGTCAACAAATA+TGG | + | chr4.1:24930330-24930349 | None:intergenic | 35.0% | |
| GATCTATCCCTCAGTTAATT+TGG | - | chr4.1:24930400-24930419 | MS.gene006810:intron | 35.0% | |
| GCTTTCCTTAAAAAACTGTG+TGG | + | chr4.1:24930756-24930775 | None:intergenic | 35.0% | |
| GTACAGCCAGAAAAAATCAA+TGG | - | chr4.1:24930907-24930926 | MS.gene006810:intron | 35.0% | |
| TAAACTCCGTAGCAAAGAAA+CGG | + | chr4.1:24931612-24931631 | None:intergenic | 35.0% | |
| TAATCCTACAGAAAGCAACA+AGG | + | chr4.1:24929538-24929557 | None:intergenic | 35.0% | |
| TACGGAGTTTACTATATTCC+TGG | - | chr4.1:24931621-24931640 | MS.gene006810:intron | 35.0% | |
| TAGTTTACGATGTCACTAAC+TGG | - | chr4.1:24931111-24931130 | MS.gene006810:intron | 35.0% | |
| TCAGTGAAACGAATTTAGTG+AGG | + | chr4.1:24930524-24930543 | None:intergenic | 35.0% | |
| TCATATGCTTATCAGTAGCA+GGG | - | chr4.1:24932138-24932157 | MS.gene006810:CDS | 35.0% | |
| TCTGGATTATCCGATATTGA+TGG | - | chr4.1:24930230-24930249 | MS.gene006810:intron | 35.0% | |
| TGACCTTTCTTAGCAACATT+GGG | + | chr4.1:24929304-24929323 | None:intergenic | 35.0% | |
| TGATTTCATTCGTGTGTTTC+AGG | - | chr4.1:24931813-24931832 | MS.gene006810:intron | 35.0% | |
| TGTGAGACTTCCATCAATAT+CGG | + | chr4.1:24930243-24930262 | None:intergenic | 35.0% | |
| TTCATATGCTTATCAGTAGC+AGG | - | chr4.1:24932137-24932156 | MS.gene006810:CDS | 35.0% | |
| TTCCTTAAAAAACTGTGTGG+GGG | + | chr4.1:24930753-24930772 | None:intergenic | 35.0% | |
| TTGACCTTTCTTAGCAACAT+TGG | + | chr4.1:24929305-24929324 | None:intergenic | 35.0% | |
| ! | GAGTTTCTTTTTCTCGAAGA+AGG | + | chr4.1:24932186-24932205 | None:intergenic | 35.0% |
| ! | GTCCATATTTGTTGACTACT+TGG | - | chr4.1:24930325-24930344 | MS.gene006810:intron | 35.0% |
| !! | ATTGATTTGGAATGGAAGAC+TGG | - | chr4.1:24929259-24929278 | MS.gene006810:CDS | 35.0% |
| !! | CGTTGACTATTGATTTGGAA+TGG | - | chr4.1:24929251-24929270 | MS.gene006810:intron | 35.0% |
| !! | GAACCTATATAGGTTGATTG+AGG | - | chr4.1:24930686-24930705 | MS.gene006810:intron | 35.0% |
| !!! | CAGATTTTTTGATCTGGTTC+TGG | - | chr4.1:24929766-24929785 | MS.gene006810:intron | 35.0% |
| !!! | TCTTATTTTCCTTTCCAGAG+AGG | - | chr4.1:24932049-24932068 | MS.gene006810:intron | 35.0% |
| AAACCGACAACAGAATGTTC+TGG | - | chr4.1:24932096-24932115 | MS.gene006810:intron | 40.0% | |
| AAACTCCGTAGCAAAGAAAC+GGG | + | chr4.1:24931611-24931630 | None:intergenic | 40.0% | |
| AAGCTATATCCCACTAAGAG+GGG | + | chr4.1:24930868-24930887 | None:intergenic | 40.0% | |
| AAGGCACAAAAGTGATATCC+AGG | + | chr4.1:24931642-24931661 | None:intergenic | 40.0% | |
| AGATGGCATTCTATGGTAGT+AGG | - | chr4.1:24931264-24931283 | MS.gene006810:intron | 40.0% | |
| AGGTACATATCACAATTGGC+TGG | - | chr4.1:24931910-24931929 | MS.gene006810:CDS | 40.0% | |
| ATATCCCCTAGCTTATGATG+AGG | - | chr4.1:24930950-24930969 | MS.gene006810:intron | 40.0% | |
| ATTCTGTGTGAATCGGGTAA+AGG | + | chr4.1:24929001-24929020 | None:intergenic | 40.0% | |
| ATTGTTGATGCGTGACTGTA+TGG | + | chr4.1:24931177-24931196 | None:intergenic | 40.0% | |
| CAACCAGAACATTCTGTTGT+CGG | + | chr4.1:24932102-24932121 | None:intergenic | 40.0% | |
| CAAGCTATATCCCACTAAGA+GGG | + | chr4.1:24930869-24930888 | None:intergenic | 40.0% | |
| CATTCACCTCATCATAAGCT+AGG | + | chr4.1:24930959-24930978 | None:intergenic | 40.0% | |
| CTGATCTGAGAATAACTGTG+TGG | - | chr4.1:24929692-24929711 | MS.gene006810:intron | 40.0% | |
| GATGGCATTCTATGGTAGTA+GGG | - | chr4.1:24931265-24931284 | MS.gene006810:intron | 40.0% | |
| GCTGTCTGATCTTGATTAGA+TGG | - | chr4.1:24931247-24931266 | MS.gene006810:intron | 40.0% | |
| TAATCATGCAGAAACCACCA+AGG | + | chr4.1:24930589-24930608 | None:intergenic | 40.0% | |
| TATGGAGATCGTGTTCAATC+TGG | - | chr4.1:24929151-24929170 | MS.gene006810:intron | 40.0% | |
| TGACTGTATGGATTCAGTGA+TGG | + | chr4.1:24931165-24931184 | None:intergenic | 40.0% | |
| TGGTTAGATAGTTAGGGATC+TGG | - | chr4.1:24931131-24931150 | MS.gene006810:intron | 40.0% | |
| TTACTAACTACGTGACTGCA+AGG | + | chr4.1:24930209-24930228 | None:intergenic | 40.0% | |
| TTCACCTCATCATAAGCTAG+GGG | + | chr4.1:24930957-24930976 | None:intergenic | 40.0% | |
| TTCTATGGTAGTAGGGAATC+TGG | - | chr4.1:24931272-24931291 | MS.gene006810:intron | 40.0% | |
| TTCTGTGTGAATCGGGTAAA+GGG | + | chr4.1:24929000-24929019 | None:intergenic | 40.0% | |
| ! | CAGTCACGCATCAACAATTT+TGG | - | chr4.1:24931179-24931198 | MS.gene006810:intron | 40.0% |
| ! | CATTCGTGTGTTTCAGGTAA+TGG | - | chr4.1:24931819-24931838 | MS.gene006810:intron | 40.0% |
| ! | CTGGCAGTGATTTCTTTTGT+TGG | - | chr4.1:24931516-24931535 | MS.gene006810:intron | 40.0% |
| ! | CTTTTAGTCTGCTGTAGGAA+AGG | - | chr4.1:24930656-24930675 | MS.gene006810:intron | 40.0% |
| ! | GGTGACGTTGACTATTGATT+TGG | - | chr4.1:24929246-24929265 | MS.gene006810:intron | 40.0% |
| ! | GGTTTCTTTTAGTCTGCTGT+AGG | - | chr4.1:24930651-24930670 | MS.gene006810:intron | 40.0% |
| ! | GTTTAGGTTACATCGTCTCA+TGG | - | chr4.1:24929115-24929134 | MS.gene006810:intron | 40.0% |
| !! | GTTTCCTTGTTGCTTTCTGT+AGG | - | chr4.1:24929531-24929550 | MS.gene006810:intron | 40.0% |
| !!! | TTCCCCCACACAGTTTTTTA+AGG | - | chr4.1:24930748-24930767 | MS.gene006810:intron | 40.0% |
| ACGGTGATTCTGTGTGAATC+GGG | + | chr4.1:24929007-24929026 | None:intergenic | 45.0% | |
| ATTCACACAGAATCACCGTC+AGG | - | chr4.1:24929008-24929027 | MS.gene006810:CDS | 45.0% | |
| CCAAGCTATATCCCACTAAG+AGG | + | chr4.1:24930870-24930889 | None:intergenic | 45.0% | |
| CCTCTTAGTGGGATATAGCT+TGG | - | chr4.1:24930867-24930886 | MS.gene006810:intron | 45.0% | |
| CCTTACCCGTTTCTTTGCTA+CGG | - | chr4.1:24931603-24931622 | MS.gene006810:intron | 45.0% | |
| GACGGTGATTCTGTGTGAAT+CGG | + | chr4.1:24929008-24929027 | None:intergenic | 45.0% | |
| GTCTCCTACGTGAGATTTAC+TGG | - | chr4.1:24931063-24931082 | MS.gene006810:intron | 45.0% | |
| TAGGGATCTTTCTGCCATTG+TGG | - | chr4.1:24930180-24930199 | MS.gene006810:intron | 45.0% | |
| TATATCCCACTAAGAGGGGT+CGG | + | chr4.1:24930864-24930883 | None:intergenic | 45.0% | |
| TCAATAGTCAACGTCACCTC+AGG | + | chr4.1:24929244-24929263 | None:intergenic | 45.0% | |
| TCAGCCAGTAAATCTCACGT+AGG | + | chr4.1:24931070-24931089 | None:intergenic | 45.0% | |
| TGACTGCAAGGATTCCACAA+TGG | + | chr4.1:24930197-24930216 | None:intergenic | 45.0% | |
| TGGCCCAATGTTGCTAAGAA+AGG | - | chr4.1:24929298-24929317 | MS.gene006810:CDS | 45.0% | |
| TGTATGGATTCAGTGATGGC+AGG | + | chr4.1:24931161-24931180 | None:intergenic | 45.0% | |
| TGTGGCATTTGTGTCTCTGT+CGG | - | chr4.1:24929710-24929729 | MS.gene006810:intron | 45.0% | |
| TTAGGAGAATGTTCGGTCTC+AGG | - | chr4.1:24929810-24929829 | MS.gene006810:intron | 45.0% | |
| TTCACACAGAATCACCGTCA+GGG | - | chr4.1:24929009-24929028 | MS.gene006810:CDS | 45.0% | |
| TTCCAGAGAGGAAGAAATGC+AGG | - | chr4.1:24932061-24932080 | MS.gene006810:intron | 45.0% | |
| ! | CTTTTCTGCAGCAGACTAGA+AGG | + | chr4.1:24929612-24929631 | None:intergenic | 45.0% |
| ! | GCATTTCTTCCTCTCTGGAA+AGG | + | chr4.1:24932061-24932080 | None:intergenic | 45.0% |
| ! | TGGACTTTTGCTTACCCTGA+CGG | + | chr4.1:24929026-24929045 | None:intergenic | 45.0% |
| ! | TTTGGAATGGAAGACTGGTG+TGG | - | chr4.1:24929264-24929283 | MS.gene006810:CDS | 45.0% |
| ACCATCGTTAACCCCAACGA+GGG | - | chr4.1:24928971-24928990 | MS.gene006810:CDS | 50.0% | |
| CAGTAGCAGGGTTGCAACTA+TGG | - | chr4.1:24932150-24932169 | MS.gene006810:CDS | 50.0% | |
| CCGTAGCAAAGAAACGGGTA+AGG | + | chr4.1:24931606-24931625 | None:intergenic | 50.0% | |
| CTCCTGCATTTCTTCCTCTC+TGG | + | chr4.1:24932066-24932085 | None:intergenic | 50.0% | |
| GGCTGCTGAGAATAAACCTG+AGG | - | chr4.1:24929225-24929244 | MS.gene006810:intron | 50.0% | |
| GGTAAAGGGTAACCCTCGTT+GGG | + | chr4.1:24928986-24929005 | None:intergenic | 50.0% | |
| GTAAAGGGTAACCCTCGTTG+GGG | + | chr4.1:24928985-24929004 | None:intergenic | 50.0% | |
| GTGGCATTTGTGTCTCTGTC+GGG | - | chr4.1:24929711-24929730 | MS.gene006810:intron | 50.0% | |
| ! | GCATTTGTTGCTGCAGAAGC+TGG | - | chr4.1:24929181-24929200 | MS.gene006810:intron | 50.0% |
| ! | GTCTCTGTCGGGATTTTGTG+AGG | - | chr4.1:24929722-24929741 | MS.gene006810:intron | 50.0% |
| ! | TTTTGTGAGGTCGTGAGGCT+AGG | - | chr4.1:24929735-24929754 | MS.gene006810:intron | 50.0% |
| ACCCTCGTTGGGGTTAACGA+TGG | + | chr4.1:24928975-24928994 | None:intergenic | 55.0% | |
| ACTAAGAGGGGTCGGCTACA+GGG | + | chr4.1:24930856-24930875 | None:intergenic | 55.0% | |
| CACCATCGTTAACCCCAACG+AGG | - | chr4.1:24928970-24928989 | MS.gene006810:CDS | 55.0% | |
| CTGGTGTGGCAGCTAAGGAT+TGG | - | chr4.1:24929278-24929297 | MS.gene006810:CDS | 55.0% | |
| GAAGACTGGTGTGGCAGCTA+AGG | - | chr4.1:24929273-24929292 | MS.gene006810:CDS | 55.0% | |
| GGGTAAAGGGTAACCCTCGT+TGG | + | chr4.1:24928987-24929006 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCTCTTAGT+GGG | - | chr4.1:24930856-24930875 | MS.gene006810:intron | 55.0% | |
| ! | CGGGATTTTGTGAGGTCGTG+AGG | - | chr4.1:24929730-24929749 | MS.gene006810:intron | 55.0% |
| !! | TTCGGTCTCAGGAGTGCTTC+AGG | - | chr4.1:24929821-24929840 | MS.gene006810:intron | 55.0% |
| CACTAAGAGGGGTCGGCTAC+AGG | + | chr4.1:24930857-24930876 | None:intergenic | 60.0% | |
| CTGTAGCCGACCCCTCTTAG+TGG | - | chr4.1:24930855-24930874 | MS.gene006810:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24928953 | 24932211 | 24928953 | ID=MS.gene006810 |
| chr4.1 | mRNA | 24928953 | 24932211 | 24928953 | ID=MS.gene006810.t1;Parent=MS.gene006810 |
| chr4.1 | exon | 24932134 | 24932211 | 24932134 | ID=MS.gene006810.t1.exon1;Parent=MS.gene006810.t1 |
| chr4.1 | CDS | 24932134 | 24932211 | 24932134 | ID=cds.MS.gene006810.t1;Parent=MS.gene006810.t1 |
| chr4.1 | exon | 24931834 | 24932043 | 24931834 | ID=MS.gene006810.t1.exon2;Parent=MS.gene006810.t1 |
| chr4.1 | CDS | 24931834 | 24932043 | 24931834 | ID=cds.MS.gene006810.t1;Parent=MS.gene006810.t1 |
| chr4.1 | exon | 24929253 | 24929329 | 24929253 | ID=MS.gene006810.t1.exon3;Parent=MS.gene006810.t1 |
| chr4.1 | CDS | 24929253 | 24929329 | 24929253 | ID=cds.MS.gene006810.t1;Parent=MS.gene006810.t1 |
| chr4.1 | exon | 24928953 | 24929097 | 24928953 | ID=MS.gene006810.t1.exon4;Parent=MS.gene006810.t1 |
| chr4.1 | CDS | 24928953 | 24929097 | 24928953 | ID=cds.MS.gene006810.t1;Parent=MS.gene006810.t1 |
| Gene Sequence |
| Protein sequence |
