AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006467

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006467.t1 MTR_1g104500 97.712 306 7 0 1 306 1 306 0.0 623
MS.gene006467.t1 MTR_5g006290 70.684 307 89 1 1 306 1 307 8.07e-167 466
MS.gene006467.t1 MTR_5g006290 73.307 251 66 1 1 250 1 251 1.73e-140 397
MS.gene006467.t1 MTR_5g006300 67.969 256 67 4 2 250 3 250 7.30e-123 353
MS.gene006467.t1 MTR_2g099720 35.152 330 177 5 3 297 45 372 2.09e-63 205
MS.gene006467.t1 MTR_1g104513 81.013 79 14 1 205 283 1 78 6.93e-36 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006467.t1 AT4G14930 60.656 305 112 5 8 306 13 315 1.22e-134 384
MS.gene006467.t1 AT4G14930 59.489 274 104 4 8 276 13 284 2.25e-119 345
MS.gene006467.t1 AT1G72880 35.135 333 167 6 2 294 54 377 4.65e-64 207
MS.gene006467.t1 AT1G72880 35.135 333 167 6 2 294 54 377 4.65e-64 207

Find 65 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAAATAAAAGACTTTC+AGG 0.149345 1.2:-77426914 None:intergenic
ACTACAGCCTATGCAGTTTC+TGG 0.181881 1.2:+77425124 MS.gene006467:CDS
ACCTATCATAAGTGCTTTAC+TGG 0.246186 1.2:+77426503 MS.gene006467:CDS
TCCATCAACGTGAACTTTCT+TGG 0.277953 1.2:-77425101 None:intergenic
CGGCAAGGGTGAAGTCATTT+AGG 0.287038 1.2:-77426467 None:intergenic
CTTTCCTACAGTTGCTGATC+TGG 0.331224 1.2:+77425477 MS.gene006467:CDS
TTCTGATTTGCAACGTTGCT+TGG 0.339298 1.2:-77426579 None:intergenic
TCCAGCTGATTGCACTTCTC+TGG 0.339357 1.2:+77425438 MS.gene006467:CDS
ACGAATCAGGGGCGCAGATT+TGG 0.341315 1.2:-77424543 None:intergenic
TGAACTTTCTTGGCAGCTAT+AGG 0.342739 1.2:-77425091 None:intergenic
GTTTACTCAGGCACAGTTGC+TGG 0.358083 1.2:+77426234 MS.gene006467:CDS
CATTATGTTACATACGAATC+AGG 0.383749 1.2:-77424556 None:intergenic
TGCACCTGGCCTCAGAGCTT+TGG 0.388469 1.2:+77424486 MS.gene006467:CDS
GCCAAGAAAGTTCACGTTGA+TGG 0.390106 1.2:+77425100 MS.gene006467:CDS
GAACTTTCTTGGCAGCTATA+GGG 0.391380 1.2:-77425090 None:intergenic
CCCTCTTGCTGCTATCTCTC+AGG 0.436326 1.2:+77427215 MS.gene006467:CDS
TCATATGAAATTGAGATAGA+AGG 0.443844 1.2:-77426285 None:intergenic
GATTTGGAGATTGTAGAGAT+TGG 0.456249 1.2:-77424527 None:intergenic
CTATCTCAATTTCATATGAC+TGG 0.460076 1.2:+77426289 MS.gene006467:CDS
GGGGTACAAGCTAACTAAGC+AGG 0.460697 1.2:+77426766 MS.gene006467:intron
CGCTATCATCATGATCAAGT+TGG 0.466868 1.2:-77427069 None:intergenic
ATGTGCTGCTGTTTCTGCAT+TGG 0.486066 1.2:-77426864 None:intergenic
GGGTAAGAGTTTAATCAAGA+TGG 0.486138 1.2:+77426787 MS.gene006467:CDS
CCCAGAGAAGTGCAATCAGC+TGG 0.489447 1.2:-77425439 None:intergenic
AACTGTAGGAAAGAGTGCTT+TGG 0.496602 1.2:-77425467 None:intergenic
ACCAGTAAAGCACTTATGAT+AGG 0.498108 1.2:-77426504 None:intergenic
TAAGCATGCTTGCGCGGCAA+GGG 0.505144 1.2:-77426481 None:intergenic
GTAAGCATGCTTGCGCGGCA+AGG 0.505343 1.2:-77426482 None:intergenic
ATCATGATCACAAACGATGA+TGG 0.505645 1.2:+77424457 MS.gene006467:CDS
CGGTGATCATAAATCTCTGC+AGG 0.508096 1.2:+77427090 MS.gene006467:CDS
TGCTGCTATCTCTCAGGCAG+AGG 0.508377 1.2:+77427221 MS.gene006467:CDS
CCAGCTGATTGCACTTCTCT+GGG 0.509126 1.2:+77425439 MS.gene006467:CDS
TACTATCAATCCAGGGTCAA+AGG 0.516690 1.2:+77426435 MS.gene006467:intron
GCTATCATCATGATCAAGTT+GGG 0.519152 1.2:-77427068 None:intergenic
CTCAGAATCTCCCTCTTCAT+CGG 0.524209 1.2:+77427284 MS.gene006467:CDS
GGTAATAAGTGGCATAAACA+TGG 0.524866 1.2:+77425844 MS.gene006467:intron
GATTGTAGAGATTGGTGTCA+AGG 0.525117 1.2:-77424519 None:intergenic
ATTATGTTACATACGAATCA+GGG 0.529718 1.2:-77424555 None:intergenic
TTAACCAAAGCTCTGAGGCC+AGG 0.534454 1.2:-77424490 None:intergenic
CACAGTTGCTGGAGCTCGAG+AGG 0.534617 1.2:+77426245 MS.gene006467:CDS
CTGTGAGTCACAGTATTACA+TGG 0.535793 1.2:+77425062 MS.gene006467:CDS
GGTAAGAGTTTAATCAAGAT+GGG 0.542532 1.2:+77426788 MS.gene006467:CDS
AGAGTTTAATCAAGATGGGA+TGG 0.551266 1.2:+77426792 MS.gene006467:CDS
CATTATAGAGCCGATGAAGA+GGG 0.552043 1.2:-77427294 None:intergenic
CCTGAGAGATAGCAGCAAGA+GGG 0.560930 1.2:-77427215 None:intergenic
GAAGCAAATCACCTCTGAGA+TGG 0.562287 1.2:+77426814 MS.gene006467:CDS
GCATTATAGAGCCGATGAAG+AGG 0.567345 1.2:-77427295 None:intergenic
GCATATTTACAGGTAATAAG+TGG 0.582535 1.2:+77425833 MS.gene006467:intron
CTGAGAGATAGCAGCAAGAG+GGG 0.583404 1.2:-77427214 None:intergenic
GATAGGTAAGCATGCTTGCG+CGG 0.591817 1.2:-77426487 None:intergenic
CATACCAGATCAGCAACTGT+AGG 0.610857 1.2:-77425481 None:intergenic
AAGCAACGTTGCAAATCAGA+AGG 0.614662 1.2:+77426581 MS.gene006467:CDS
CAAATCACCTCTGAGATGGA+AGG 0.617751 1.2:+77426818 MS.gene006467:CDS
GCCTGAGAGATAGCAGCAAG+AGG 0.617751 1.2:-77427216 None:intergenic
CATTCAAGCAAAATGGAGGA+AGG 0.620237 1.2:+77424415 None:intergenic
GGGTACAAGCTAACTAAGCA+GGG 0.630776 1.2:+77426767 MS.gene006467:CDS
GATCATAAATCTCTGCAGGA+AGG 0.638161 1.2:+77427094 MS.gene006467:CDS
AAACAAACCAGAAACTGCAT+AGG 0.644138 1.2:-77425131 None:intergenic
GATGATGGAATCGATGCACC+TGG 0.645617 1.2:+77424472 MS.gene006467:CDS
GTAATAAGTGGCATAAACAT+GGG 0.650041 1.2:+77425845 MS.gene006467:CDS
CAACTTGATCATGATGATAG+CGG 0.662382 1.2:+77427070 MS.gene006467:CDS
GAGCTTTAACCAAAGCTCTG+AGG 0.681690 1.2:-77424495 None:intergenic
GAGGAAGGTAAGAATAACAG+AGG 0.686244 1.2:+77424430 MS.gene006467:CDS
ATAAACATGGGTAACAACTG+TGG 0.695093 1.2:+77425857 MS.gene006467:CDS
TTATGTTACATACGAATCAG+GGG 0.702173 1.2:-77424554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAAATAAAAATTAT+TGG + chr1.2:77427126-77427145 MS.gene006467:intron 0.0%
!! ACCAAAATAAATAAATAAAA+TGG - chr1.2:77425623-77425642 None:intergenic 10.0%
!!! ACCATTTTATTTATTTATTT+TGG + chr1.2:77425619-77425638 MS.gene006467:intron 10.0%
!!! AGTACAAATATTTTTTTTAA+TGG - chr1.2:77426191-77426210 None:intergenic 10.0%
!!! TTTTATTTATTTATTTTGGT+AGG + chr1.2:77425623-77425642 MS.gene006467:intron 10.0%
!! TTACTTAACTATTTCAAAAT+TGG + chr1.2:77425017-77425036 MS.gene006467:intron 15.0%
!! TTTAATACAAGTTAATGAAA+GGG - chr1.2:77425305-77425324 None:intergenic 15.0%
!!! AAAAAATATTTGTACTGATT+AGG + chr1.2:77426195-77426214 MS.gene006467:intron 15.0%
!!! AGAGCTTTTATTAATATATA+TGG + chr1.2:77426382-77426401 MS.gene006467:intron 15.0%
!!! GTATACAATTTTAATTTTGT+AGG + chr1.2:77427036-77427055 MS.gene006467:intron 15.0%
!!! TTTTAATACAAGTTAATGAA+AGG - chr1.2:77425306-77425325 None:intergenic 15.0%
!! AATTTAGGTCTATTTAAAAG+CGG - chr1.2:77424729-77424748 None:intergenic 20.0%
!! GAAAAACATAAATTATACCA+AGG - chr1.2:77425173-77425192 None:intergenic 20.0%
!!! AATTGATTCTATTTGAAGTT+AGG + chr1.2:77424808-77424827 MS.gene006467:intron 20.0%
!!! AGATTGTCAAAACTATTTTA+AGG + chr1.2:77427245-77427264 MS.gene006467:CDS 20.0%
!!! ATTTTAATTTTGTAGGTAAG+AGG + chr1.2:77427043-77427062 MS.gene006467:intron 20.0%
!!! GTTAATTTGTTATGATTCAA+AGG + chr1.2:77426705-77426724 MS.gene006467:intron 20.0%
!!! TAAATAAAATGGTTTGCATT+TGG - chr1.2:77425612-77425631 None:intergenic 20.0%
!!! TTTGTAAAACTGTTTTTCAT+CGG + chr1.2:77425262-77425281 MS.gene006467:intron 20.0%
!!! TTTTTTCTGTTGTTTTTTAG+TGG + chr1.2:77424767-77424786 MS.gene006467:intron 20.0%
! AACATAAATTATACCAAGGA+AGG - chr1.2:77425169-77425188 None:intergenic 25.0%
! AAGACGAATTTGTCAAAAAA+TGG - chr1.2:77426968-77426987 None:intergenic 25.0%
! AATATAAAACAAGTGCTATC+TGG - chr1.2:77426665-77426684 None:intergenic 25.0%
! ACATAAATTATACCAAGGAA+GGG - chr1.2:77425168-77425187 None:intergenic 25.0%
! ACTCCTTTGGTTAAATAAAA+AGG - chr1.2:77426024-77426043 None:intergenic 25.0%
! ACTTCAAATAGAATCAATTC+TGG - chr1.2:77424807-77424826 None:intergenic 25.0%
! AGATTAATATCTGACCATTT+GGG + chr1.2:77426410-77426429 MS.gene006467:intron 25.0%
! AGTAATTACATTGTTGGAAT+GGG + chr1.2:77425550-77425569 MS.gene006467:intron 25.0%
! ATTAAGATGACTAAAGATGA+GGG - chr1.2:77425910-77425929 None:intergenic 25.0%
! ATTATGTTACATACGAATCA+GGG - chr1.2:77424558-77424577 None:intergenic 25.0%
! TAGATTAATATCTGACCATT+TGG + chr1.2:77426409-77426428 MS.gene006467:intron 25.0%
! TATTAAGATGACTAAAGATG+AGG - chr1.2:77425911-77425930 None:intergenic 25.0%
! TCATATGAAATTGAGATAGA+AGG - chr1.2:77426288-77426307 None:intergenic 25.0%
! TCTTTGAGTAATTACATTGT+TGG + chr1.2:77425544-77425563 MS.gene006467:intron 25.0%
! TTATTACCTGTAAATATGCA+TGG - chr1.2:77425832-77425851 None:intergenic 25.0%
!! AAATAGACCTAAATTGATTC+CGG + chr1.2:77424734-77424753 MS.gene006467:intron 25.0%
!! TAACTGATTCTCGTAAAATA+GGG - chr1.2:77424687-77424706 None:intergenic 25.0%
!! TTAACTGATTCTCGTAAAAT+AGG - chr1.2:77424688-77424707 None:intergenic 25.0%
!! TTTTTAATGGCAAATGTTAG+TGG - chr1.2:77426178-77426197 None:intergenic 25.0%
!!! ATATTCAAAAAGCACTTTTG+AGG - chr1.2:77426552-77426571 None:intergenic 25.0%
!!! CATGCTTTTTTTAGTTGTAA+AGG - chr1.2:77425961-77425980 None:intergenic 25.0%
!!! GTATATTTGAAATGCTTTTG+TGG + chr1.2:77426311-77426330 MS.gene006467:intron 25.0%
!!! GTCAAAACTATTTTAAGGAT+TGG + chr1.2:77427250-77427269 MS.gene006467:CDS 25.0%
AACTAGAAGTAGTGCAAATA+AGG - chr1.2:77425693-77425712 None:intergenic 30.0%
ACGAATTTGTCAAAAAATGG+TGG - chr1.2:77426965-77426984 None:intergenic 30.0%
ACTAGAAGTAGTGCAAATAA+GGG - chr1.2:77425692-77425711 None:intergenic 30.0%
ACTCGTTTATTATGTACGTA+CGG - chr1.2:77424630-77424649 None:intergenic 30.0%
CATAAATTATACCAAGGAAG+GGG - chr1.2:77425167-77425186 None:intergenic 30.0%
CATTATGTTACATACGAATC+AGG - chr1.2:77424559-77424578 None:intergenic 30.0%
CTATCTCAATTTCATATGAC+TGG + chr1.2:77426289-77426308 MS.gene006467:CDS 30.0%
CTTGCAAATAAAAGACTTTC+AGG - chr1.2:77426917-77426936 None:intergenic 30.0%
GAGTAATTACATTGTTGGAA+TGG + chr1.2:77425549-77425568 MS.gene006467:intron 30.0%
GATTAATATCTGACCATTTG+GGG + chr1.2:77426411-77426430 MS.gene006467:intron 30.0%
GCATATTTACAGGTAATAAG+TGG + chr1.2:77425833-77425852 MS.gene006467:intron 30.0%
GGTAAGAGTTTAATCAAGAT+GGG + chr1.2:77426788-77426807 MS.gene006467:CDS 30.0%
GTAAAGAATTTGCATAAGGA+AGG - chr1.2:77425412-77425431 None:intergenic 30.0%
GTAATAAGTGGCATAAACAT+GGG + chr1.2:77425845-77425864 MS.gene006467:CDS 30.0%
TCAAATAGAATCAATTCTGG+AGG - chr1.2:77424804-77424823 None:intergenic 30.0%
TCCTGTAAAGAATTTGCATA+AGG - chr1.2:77425416-77425435 None:intergenic 30.0%
TCCTTATGCAAATTCTTTAC+AGG + chr1.2:77425412-77425431 MS.gene006467:intron 30.0%
TGAGTAAACACTGCATAAAA+GGG - chr1.2:77426223-77426242 None:intergenic 30.0%
TTATGTTACATACGAATCAG+GGG - chr1.2:77424557-77424576 None:intergenic 30.0%
TTATTTAACCAAAGGAGTAG+TGG + chr1.2:77426026-77426045 MS.gene006467:intron 30.0%
! AATTTTACGAACACCTTTCA+AGG - chr1.2:77425649-77425668 None:intergenic 30.0%
! TTTTGTGCTCATAACTGTAA+TGG + chr1.2:77426084-77426103 MS.gene006467:intron 30.0%
! TTTTTCATCGGATGAAGTTT+TGG + chr1.2:77425274-77425293 MS.gene006467:intron 30.0%
!! AGGCCTTTTTATTTAACCAA+AGG + chr1.2:77426018-77426037 MS.gene006467:intron 30.0%
!! CTTTTATTTGCAAGAGAAGT+AGG + chr1.2:77426923-77426942 MS.gene006467:intron 30.0%
AAAACTAAAACTCGAACTGC+AGG - chr1.2:77425524-77425543 None:intergenic 35.0%
AAACAAACCAGAAACTGCAT+AGG - chr1.2:77425134-77425153 None:intergenic 35.0%
AACAGACATAATACAGAGTG+TGG + chr1.2:77427155-77427174 MS.gene006467:intron 35.0%
AATGTGCCATGCATATTTAC+AGG + chr1.2:77425823-77425842 MS.gene006467:intron 35.0%
ACCTATCATAAGTGCTTTAC+TGG + chr1.2:77426503-77426522 MS.gene006467:CDS 35.0%
AGAGTTTAATCAAGATGGGA+TGG + chr1.2:77426792-77426811 MS.gene006467:CDS 35.0%
ATAAACATGGGTAACAACTG+TGG + chr1.2:77425857-77425876 MS.gene006467:CDS 35.0%
ATCATGATCACAAACGATGA+TGG + chr1.2:77424457-77424476 MS.gene006467:CDS 35.0%
CAACTTGATCATGATGATAG+CGG + chr1.2:77427070-77427089 MS.gene006467:CDS 35.0%
CAGAAAAAATTGTGCATCTC+CGG - chr1.2:77424756-77424775 None:intergenic 35.0%
CAGTTAATTAAGCGTACGTT+TGG + chr1.2:77424701-77424720 MS.gene006467:intron 35.0%
CTGAGTAAACACTGCATAAA+AGG - chr1.2:77426224-77426243 None:intergenic 35.0%
GATTCTGACTAATAGTGAGT+TGG - chr1.2:77424935-77424954 None:intergenic 35.0%
GATTTGGAGATTGTAGAGAT+TGG - chr1.2:77424530-77424549 None:intergenic 35.0%
GCTATCATCATGATCAAGTT+GGG - chr1.2:77427071-77427090 None:intergenic 35.0%
GGGTAAGAGTTTAATCAAGA+TGG + chr1.2:77426787-77426806 MS.gene006467:CDS 35.0%
GGTAATAAGTGGCATAAACA+TGG + chr1.2:77425844-77425863 MS.gene006467:intron 35.0%
GTACGTACATAATAAACGAG+TGG + chr1.2:77424629-77424648 MS.gene006467:intron 35.0%
! ACCAGTAAAGCACTTATGAT+AGG - chr1.2:77426507-77426526 None:intergenic 35.0%
! AGTGAATGGTGTTTGGAATT+TGG - chr1.2:77424906-77424925 None:intergenic 35.0%
! ATAATTTTTCTCCTTCGTCC+GGG - chr1.2:77426151-77426170 None:intergenic 35.0%
! CTTTTATGCAGTGTTTACTC+AGG + chr1.2:77426222-77426241 MS.gene006467:intron 35.0%
! GATAATTTTTCTCCTTCGTC+CGG - chr1.2:77426152-77426171 None:intergenic 35.0%
! TAGGAGGAAATGGGATTTTA+AGG + chr1.2:77425998-77426017 MS.gene006467:intron 35.0%
! TTGCAAATCAGAAGGTATGT+TGG + chr1.2:77426589-77426608 MS.gene006467:intron 35.0%
!! AACTGTAATGGATTGAGCTA+AGG + chr1.2:77426096-77426115 MS.gene006467:intron 35.0%
!! ACTGTAATGGATTGAGCTAA+GGG + chr1.2:77426097-77426116 MS.gene006467:intron 35.0%
!! AGCACTTTTGAGGATATCTT+TGG - chr1.2:77426542-77426561 None:intergenic 35.0%
!!! TTATTTTGGTAGGCCTTGAA+AGG + chr1.2:77425633-77425652 MS.gene006467:intron 35.0%
AAGCAACGTTGCAAATCAGA+AGG + chr1.2:77426581-77426600 MS.gene006467:CDS 40.0%
AGCATGTTTGTGAAGAGAGA+AGG + chr1.2:77425975-77425994 MS.gene006467:intron 40.0%
AGCTTCATCAGAAAACACTG+AGG - chr1.2:77425219-77425238 None:intergenic 40.0%
AGTGAATAATTTCGTCCAGC+TGG + chr1.2:77425795-77425814 MS.gene006467:intron 40.0%
CGCTATCATCATGATCAAGT+TGG - chr1.2:77427072-77427091 None:intergenic 40.0%
CTGTGAGTCACAGTATTACA+TGG + chr1.2:77425062-77425081 MS.gene006467:CDS 40.0%
GAACTTTCTTGGCAGCTATA+GGG - chr1.2:77425093-77425112 None:intergenic 40.0%
GACAAGAAGCAGATAGAGTA+AGG - chr1.2:77425588-77425607 None:intergenic 40.0%
GAGGAAGGTAAGAATAACAG+AGG + chr1.2:77424430-77424449 MS.gene006467:CDS 40.0%
GAGGTAAAGTGAATGGTGTT+TGG - chr1.2:77424913-77424932 None:intergenic 40.0%
GATCATAAATCTCTGCAGGA+AGG + chr1.2:77427094-77427113 MS.gene006467:CDS 40.0%
TACTATCAATCCAGGGTCAA+AGG + chr1.2:77426435-77426454 MS.gene006467:intron 40.0%
TCCATCAACGTGAACTTTCT+TGG - chr1.2:77425104-77425123 None:intergenic 40.0%
TGAACTTTCTTGGCAGCTAT+AGG - chr1.2:77425094-77425113 None:intergenic 40.0%
TGCATCTCCGGAATCAATTT+AGG - chr1.2:77424744-77424763 None:intergenic 40.0%
TGTTTGTGAAGAGAGAAGGT+AGG + chr1.2:77425979-77425998 MS.gene006467:intron 40.0%
TTCTTCTGTGTCTCCCAAAA+GGG + chr1.2:77426746-77426765 MS.gene006467:intron 40.0%
TTGGGGATACTATCAATCCA+GGG + chr1.2:77426428-77426447 MS.gene006467:intron 40.0%
TTTGGGGATACTATCAATCC+AGG + chr1.2:77426427-77426446 MS.gene006467:intron 40.0%
! GGATTGATAGTATCCCCAAA+TGG - chr1.2:77426427-77426446 None:intergenic 40.0%
! TCTGACTAATAGTGAGTTGG+AGG - chr1.2:77424932-77424951 None:intergenic 40.0%
! TGAGTTGGAGGTAAAGTGAA+TGG - chr1.2:77424920-77424939 None:intergenic 40.0%
! TGCTTTTGTGGCTATATTGC+TGG + chr1.2:77426323-77426342 MS.gene006467:intron 40.0%
! TTCTGATTTGCAACGTTGCT+TGG - chr1.2:77426582-77426601 None:intergenic 40.0%
!! AACTGTAGGAAAGAGTGCTT+TGG - chr1.2:77425470-77425489 None:intergenic 40.0%
!! CTGTAATGGATTGAGCTAAG+GGG + chr1.2:77426098-77426117 MS.gene006467:intron 40.0%
!! GATTGTAGAGATTGGTGTCA+AGG - chr1.2:77424522-77424541 None:intergenic 40.0%
!!! AGTTAGCTTGTACCCCTTTT+GGG - chr1.2:77426762-77426781 None:intergenic 40.0%
!!! TAGTTAGCTTGTACCCCTTT+TGG - chr1.2:77426763-77426782 None:intergenic 40.0%
!!! TTCTGTTTTTTCCCCTTCCT+TGG + chr1.2:77425153-77425172 MS.gene006467:intron 40.0%
ACTACAGCCTATGCAGTTTC+TGG + chr1.2:77425124-77425143 MS.gene006467:CDS 45.0%
AGAGAGAAGGTAGGAGGAAA+TGG + chr1.2:77425988-77426007 MS.gene006467:intron 45.0%
ATGGCACATTAGAAACCAGC+TGG - chr1.2:77425813-77425832 None:intergenic 45.0%
CATACCAGATCAGCAACTGT+AGG - chr1.2:77425484-77425503 None:intergenic 45.0%
CGGTGATCATAAATCTCTGC+AGG + chr1.2:77427090-77427109 MS.gene006467:CDS 45.0%
CTCAGAATCTCCCTCTTCAT+CGG + chr1.2:77427284-77427303 MS.gene006467:CDS 45.0%
CTTTCCTACAGTTGCTGATC+TGG + chr1.2:77425477-77425496 MS.gene006467:CDS 45.0%
GAAGTTCCCGAGTTAAAACC+CGG + chr1.2:77426130-77426149 MS.gene006467:intron 45.0%
GAGAGAAGGTAGGAGGAAAT+GGG + chr1.2:77425989-77426008 MS.gene006467:intron 45.0%
GAGCTATACCACTACTCCTT+TGG - chr1.2:77426037-77426056 None:intergenic 45.0%
GCCAAGAAAGTTCACGTTGA+TGG + chr1.2:77425100-77425119 MS.gene006467:CDS 45.0%
GGGTACAAGCTAACTAAGCA+GGG + chr1.2:77426767-77426786 MS.gene006467:CDS 45.0%
GTAAAATAGGGTCCACTCCA+GGG - chr1.2:77424675-77424694 None:intergenic 45.0%
GTTCTTCTGTGTCTCCCAAA+AGG + chr1.2:77426745-77426764 MS.gene006467:intron 45.0%
TCTTCTGTGTCTCCCAAAAG+GGG + chr1.2:77426747-77426766 MS.gene006467:intron 45.0%
TTGTGAAGAGAGAAGGTAGG+AGG + chr1.2:77425982-77426001 MS.gene006467:intron 45.0%
! ACTCACAGCTGATTTCTCAC+TGG - chr1.2:77425050-77425069 None:intergenic 45.0%
! GAAGCAAATCACCTCTGAGA+TGG + chr1.2:77426814-77426833 MS.gene006467:CDS 45.0%
! GAGCTTTAACCAAAGCTCTG+AGG - chr1.2:77424498-77424517 None:intergenic 45.0%
! TTTTCGTCCTTCCATCTCAG+AGG - chr1.2:77426828-77426847 None:intergenic 45.0%
!! ATGTGCTGCTGTTTCTGCAT+TGG - chr1.2:77426867-77426886 None:intergenic 45.0%
!! CAAATCACCTCTGAGATGGA+AGG + chr1.2:77426818-77426837 MS.gene006467:CDS 45.0%
AAACTCGAACTGCAGGAGCA+AGG - chr1.2:77425517-77425536 None:intergenic 50.0%
AACTCGAACTGCAGGAGCAA+GGG - chr1.2:77425516-77425535 None:intergenic 50.0%
ACACTGAGGTCGCATGAATG+TGG - chr1.2:77425205-77425224 None:intergenic 50.0%
ATCCATGCATTTCCCTGGAG+TGG + chr1.2:77424660-77424679 MS.gene006467:intron 50.0%
CCAGCTGATTGCACTTCTCT+GGG + chr1.2:77425439-77425458 MS.gene006467:CDS 50.0%
CCTGAGAGATAGCAGCAAGA+GGG - chr1.2:77427218-77427237 None:intergenic 50.0%
CGGCAAGGGTGAAGTCATTT+AGG - chr1.2:77426470-77426489 None:intergenic 50.0%
CGTAAAATAGGGTCCACTCC+AGG - chr1.2:77424676-77424695 None:intergenic 50.0%
CTCTCATCCATGCATTTCCC+TGG + chr1.2:77424655-77424674 MS.gene006467:intron 50.0%
CTGAGAGATAGCAGCAAGAG+GGG - chr1.2:77427217-77427236 None:intergenic 50.0%
GATAGGTAAGCATGCTTGCG+CGG - chr1.2:77426490-77426509 None:intergenic 50.0%
GGGGTACAAGCTAACTAAGC+AGG + chr1.2:77426766-77426785 MS.gene006467:intron 50.0%
GTTACTCGTTCCTTTGACCC+TGG - chr1.2:77426448-77426467 None:intergenic 50.0%
GTTTACTCAGGCACAGTTGC+TGG + chr1.2:77426234-77426253 MS.gene006467:CDS 50.0%
TCCAGCTGATTGCACTTCTC+TGG + chr1.2:77425438-77425457 MS.gene006467:CDS 50.0%
!! GATGATGGAATCGATGCACC+TGG + chr1.2:77424472-77424491 MS.gene006467:CDS 50.0%
!! TTAACCAAAGCTCTGAGGCC+AGG - chr1.2:77424493-77424512 None:intergenic 50.0%
!!! CCTTCGTCCGGGTTTTAACT+CGG - chr1.2:77426140-77426159 None:intergenic 50.0%
!!! CTTCGTCCGGGTTTTAACTC+GGG - chr1.2:77426139-77426158 None:intergenic 50.0%
CCCTCTTGCTGCTATCTCTC+AGG + chr1.2:77427215-77427234 MS.gene006467:CDS 55.0%
CCGAGTTAAAACCCGGACGA+AGG + chr1.2:77426137-77426156 MS.gene006467:intron 55.0%
GAACTGCAGGAGCAAGGGAA+GGG - chr1.2:77425511-77425530 None:intergenic 55.0%
GCCTGAGAGATAGCAGCAAG+AGG - chr1.2:77427219-77427238 None:intergenic 55.0%
GTCCACTCCAGGGAAATGCA+TGG - chr1.2:77424665-77424684 None:intergenic 55.0%
TAAGCATGCTTGCGCGGCAA+GGG - chr1.2:77426484-77426503 None:intergenic 55.0%
TGCTGCTATCTCTCAGGCAG+AGG + chr1.2:77427221-77427240 MS.gene006467:CDS 55.0%
! ACGAATCAGGGGCGCAGATT+TGG - chr1.2:77424546-77424565 None:intergenic 55.0%
! CCCAGAGAAGTGCAATCAGC+TGG - chr1.2:77425442-77425461 None:intergenic 55.0%
CACAGTTGCTGGAGCTCGAG+AGG + chr1.2:77426245-77426264 MS.gene006467:CDS 60.0%
CGAACTGCAGGAGCAAGGGA+AGG - chr1.2:77425512-77425531 None:intergenic 60.0%
GTAAGCATGCTTGCGCGGCA+AGG - chr1.2:77426485-77426504 None:intergenic 60.0%
TGCACCTGGCCTCAGAGCTT+TGG + chr1.2:77424486-77424505 MS.gene006467:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 77424427 77427314 77424427 ID=MS.gene006467
chr1.2 mRNA 77424427 77427314 77424427 ID=MS.gene006467.t1;Parent=MS.gene006467
chr1.2 exon 77424427 77424563 77424427 ID=MS.gene006467.t1.exon1;Parent=MS.gene006467.t1
chr1.2 CDS 77424427 77424563 77424427 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77425051 77425145 77425051 ID=MS.gene006467.t1.exon2;Parent=MS.gene006467.t1
chr1.2 CDS 77425051 77425145 77425051 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77425434 77425498 77425434 ID=MS.gene006467.t1.exon3;Parent=MS.gene006467.t1
chr1.2 CDS 77425434 77425498 77425434 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77425845 77425888 77425845 ID=MS.gene006467.t1.exon4;Parent=MS.gene006467.t1
chr1.2 CDS 77425845 77425888 77425845 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77426233 77426310 77426233 ID=MS.gene006467.t1.exon5;Parent=MS.gene006467.t1
chr1.2 CDS 77426233 77426310 77426233 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77426449 77426602 77426449 ID=MS.gene006467.t1.exon6;Parent=MS.gene006467.t1
chr1.2 CDS 77426449 77426602 77426449 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77426767 77426940 77426767 ID=MS.gene006467.t1.exon7;Parent=MS.gene006467.t1
chr1.2 CDS 77426767 77426940 77426767 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77427058 77427120 77427058 ID=MS.gene006467.t1.exon8;Parent=MS.gene006467.t1
chr1.2 CDS 77427058 77427120 77427058 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
chr1.2 exon 77427204 77427314 77427204 ID=MS.gene006467.t1.exon9;Parent=MS.gene006467.t1
chr1.2 CDS 77427204 77427314 77427204 ID=cds.MS.gene006467.t1;Parent=MS.gene006467.t1
Gene Sequence

>MS.gene006467

ATGGAGGAAGGTAAGAATAACAGAGGAACGATCATGATCACAAACGATGATGGAATCGATGCACCTGGCCTCAGAGCTTTGGTTAAAGCTCTCCTTGACACCAATCTCTACAATCTCCAAATCTGCGCCCCTGATTCGTATGTAACATAATGTTCTCTCTCTCTCTCTTTCATTTTATTCTTCACTTTCATTTTCATCAACCGTACGTACATAATAAACGAGTGGTTACTCTCATCCATGCATTTCCCTGGAGTGGACCCTATTTTACGAGAATCAGTTAATTAAGCGTACGTTTGGTTCCGCTTTTAAATAGACCTAAATTGATTCCGGAGATGCACAATTTTTTCTGTTGTTTTTTAGTGGAATTGATTTTGCCTCCAGAATTGATTCTATTTGAAGTTAGGATTTTCAACTTTTGATTCTAGAATTGAATTTTACTCTCATTTATAGTTTAATTCACTTTTACATGAATGTATCCAAATTCCAAACACCATTCACTTTACCTCCAACTCACTATTAGTCAGAATCAATTTTACAGAATCAATTTACTCAAAATCAATGCTAGCAAGCAACACTTGTGATTTGTACTGTTACTTAACTATTTCAAAATTGGATAATTTCCAGTGAGAAATCAGCTGTGAGTCACAGTATTACATGGCTTCACCCTATAGCTGCCAAGAAAGTTCACGTTGATGGAACTACAGCCTATGCAGTTTCTGGTTTGTTTTCTGTTTTTTCCCCTTCCTTGGTATAATTTATGTTTTTCTGCGCTTTTCCACATTCATGCGACCTCAGTGTTTTCTGATGAAGCTGTTGATACATTATTTGATATATCTTTGTAAAACTGTTTTTCATCGGATGAAGTTTTGGCAGATCCCTTTCATTAACTTGTATTAAAAACTGTGTAACTCTACTTTTTAATTTTTTTACAAGTTACTTTCAAATGCATTAGTACTACATATTTTCTTGTCTTACAGAATGTCCTTCCTTATGCAAATTCTTTACAGGAACTCCAGCTGATTGCACTTCTCTGGGAGTTTCCAAAGCACTCTTTCCTACAGTTGCTGATCTGGTATGATAGCCCTTCCCTTGCTCCTGCAGTTCGAGTTTTAGTTTTTCTTTGAGTAATTACATTGTTGGAATGGGCTCTTTTCTTTTCCTTACTCTATCTGCTTCTTGTCACCAAATGCAAACCATTTTATTTATTTATTTTGGTAGGCCTTGAAAGGTGTTCGTAAAATTCTTCAGCATTGAGATTTTGTCCCTTATTTGCACTACTTCTAGTTTTTGACTTTCATTATTTTGTTGAGATTTTATTTTTCTGAGAAATTTCTCACATATAAAATCTTTTTGACTAAAGCTACGTGAAGTGAATAATTTCGTCCAGCTGGTTTCTAATGTGCCATGCATATTTACAGGTAATAAGTGGCATAAACATGGGTAACAACTGTGGTTATCACATGTAAGTAGTGTCTCTTTTCCCTCATCTTTAGTCATCTTAATACTTTTCTACTCAGAACTGCAAATTATTCCTTTACAACTAAAAAAAGCATGTTTGTGAAGAGAGAAGGTAGGAGGAAATGGGATTTTAAGGCCTTTTTATTTAACCAAAGGAGTAGTGGTATAGCTCAAATTCTGTATCATTAATTCACATCATTTTTGTGCTCATAACTGTAATGGATTGAGCTAAGGGGTGATGAGTTGAAGTTCCCGAGTTAAAACCCGGACGAAGGAGAAAAATTATCTAACCACTAACATTTGCCATTAAAAAAAATATTTGTACTGATTAGGTTCCCTTTTATGCAGTGTTTACTCAGGCACAGTTGCTGGAGCTCGAGAGGCATTCTTCTATGATATACCTTCTATCTCAATTTCATATGACTGGTATATTTGAAATGCTTTTGTGGCTATATTGCTGGATTATCTTAAATGTCTGTTTTGAATTGAATATTTTAAGAGCTTTTATTAATATATATGGCTCATAGATTAATATCTGACCATTTGGGGATACTATCAATCCAGGGTCAAAGGAACGAGTAACCTAAATGACTTCACCCTTGCCGCGCAAGCATGCTTACCTATCATAAGTGCTTTACTGGTTGATATAAAGAACCAAAGATATCCTCAAAAGTGCTTTTTGAATATAGATGTTCCAAGCAACGTTGCAAATCAGAAGGTATGTTGGTTTTTTTTTTTTTTGTTTAGTTTAATAAATGTATAACAAAAATGAAATAGCCAGATAGCACTTGTTTTATATTTGAAGAAGCAGATAGCACTTGTTAATTTGTTATGATTCAAAGGTTTATGATTAATCTGTTGTTCTTCTGTGTCTCCCAAAAGGGGTACAAGCTAACTAAGCAGGGTAAGAGTTTAATCAAGATGGGATGGAAGCAAATCACCTCTGAGATGGAAGGACGAAAAATGTTATCAGATATGACCAATGCAGAAACAGCAGCACATGCAGATGTTAACGTGTCATCTACATCACCTGAAAGTCTTTTATTTGCAAGAGAAGTAGGTTGATTTTGCTTATTTCCACCATTTTTTGACAAATTCGTCTTGTTTTAAACAGTGATACACAGCTTAGACTTTTTCTTGAGTATGATGCAGTATACAATTTTAATTTTGTAGGTAAGAGGTTCCCAACTTGATCATGATGATAGCGGTGATCATAAATCTCTGCAGGAAGGATATGTGAGTATATATAAATAAAAATTATTGGACAGTAAACAGACATAATACAGAGTGTGGCTAACATGATCTCGCTTTTTGTTTAGATTACTGTCACCCCTCTTGCTGCTATCTCTCAGGCAGAGGTAGATTGTCAAAACTATTTTAAGGATTGGCTACAAAATGTCTCAGAATCTCCCTCTTCATCGGCTCTATAA
Protein sequence

>MS.gene006467.t1

MEEGKNNRGTIMITNDDGIDAPGLRALVKALLDTNLYNLQICAPDSEKSAVSHSITWLHPIAAKKVHVDGTTAYAVSGTPADCTSLGVSKALFPTVADLVISGINMGNNCGYHIVYSGTVAGAREAFFYDIPSISISYDWVKGTSNLNDFTLAAQACLPIISALLVDIKNQRYPQKCFLNIDVPSNVANQKGYKLTKQGKSLIKMGWKQITSEMEGRKMLSDMTNAETAAHADVNVSSTSPESLLFAREVRGSQLDHDDSGDHKSLQEGYITVTPLAAISQAEVDCQNYFKDWLQNVSESPSSSAL