AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006667

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006667.t1 MTR_4g079500 98.489 331 2 1 1 331 1 328 0.0 669
MS.gene006667.t1 MTR_2g090900 63.188 345 91 13 1 331 1 323 1.57e-119 347
MS.gene006667.t1 MTR_2g090900 62.791 344 92 13 1 330 1 322 6.20e-119 347
MS.gene006667.t1 MTR_2g078370 40.000 230 95 14 1 203 1 214 9.90e-26 102
MS.gene006667.t1 MTR_8g088650 52.941 102 43 1 191 292 228 324 1.59e-23 100
MS.gene006667.t1 MTR_2g078360 60.000 75 20 2 251 316 1 74 4.33e-22 89.0
MS.gene006667.t1 MTR_5g075390 48.387 93 48 0 197 289 159 251 5.72e-20 89.7
MS.gene006667.t1 MTR_4g072090 37.589 141 65 2 174 291 314 454 6.57e-20 90.5
MS.gene006667.t1 MTR_2g099050 46.000 100 54 0 195 294 219 318 2.76e-19 88.6
MS.gene006667.t1 MTR_3g005230 49.425 87 44 0 206 292 136 222 2.98e-19 86.3
MS.gene006667.t1 MTR_6g034945 34.286 175 102 2 136 310 96 257 4.48e-19 86.7
MS.gene006667.t1 MTR_3g467120 45.161 93 51 0 197 289 177 269 3.46e-18 84.7
MS.gene006667.t1 MTR_3g094020 44.681 94 52 0 196 289 107 200 3.90e-17 80.9
MS.gene006667.t1 MTR_4g072090 35.714 126 58 2 174 276 314 439 3.04e-15 76.6
MS.gene006667.t1 MTR_1g023690 48.980 98 46 2 196 291 386 481 5.54e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006667.t1 AT3G58120 55.556 351 114 12 1 331 1 329 5.11e-104 308
MS.gene006667.t1 AT2G42380 53.333 345 122 10 1 331 1 320 1.04e-100 299
MS.gene006667.t1 AT2G42380 49.855 345 123 11 1 331 1 309 2.66e-89 270
MS.gene006667.t1 AT3G58120 56.122 294 98 10 1 276 1 281 3.62e-87 263
MS.gene006667.t1 AT2G42380 53.873 284 104 7 1 276 1 265 5.90e-83 252
MS.gene006667.t1 AT2G42380 46.939 245 103 7 1 237 1 226 5.54e-53 174
MS.gene006667.t1 AT2G42380 46.939 245 103 7 1 237 1 226 5.54e-53 174
MS.gene006667.t1 AT1G58110 29.552 335 162 10 2 292 20 324 8.66e-29 114
MS.gene006667.t1 AT1G58110 29.552 335 162 10 2 292 20 324 8.66e-29 114
MS.gene006667.t1 AT1G43700 49.485 97 49 0 195 291 192 288 1.27e-20 91.3
MS.gene006667.t1 AT4G38900 47.368 95 50 0 195 289 392 486 9.65e-20 90.5
MS.gene006667.t1 AT4G38900 47.368 95 50 0 195 289 392 486 9.65e-20 90.5
MS.gene006667.t1 AT2G40620 45.263 95 52 0 195 289 146 240 5.28e-19 87.0
MS.gene006667.t1 AT1G06070 44.000 100 56 0 195 294 208 307 1.25e-18 86.7
MS.gene006667.t1 AT1G06850 47.312 93 49 0 197 289 148 240 2.14e-18 85.1
MS.gene006667.t1 AT2G21230 45.361 97 53 0 195 291 368 464 2.21e-18 86.3
MS.gene006667.t1 AT2G21230 45.361 97 53 0 195 291 368 464 2.21e-18 86.3
MS.gene006667.t1 AT2G31370 42.991 107 61 0 188 294 192 298 4.60e-18 84.3
MS.gene006667.t1 AT2G31370 28.287 251 152 6 63 294 57 298 6.23e-18 84.3
MS.gene006667.t1 AT2G31370 28.287 251 152 6 63 294 57 298 6.23e-18 84.3
MS.gene006667.t1 AT2G31370 28.287 251 152 6 63 294 57 298 6.23e-18 84.3
MS.gene006667.t1 AT2G31370 28.287 251 152 6 63 294 57 298 6.23e-18 84.3
MS.gene006667.t1 AT2G31370 28.287 251 152 6 63 294 57 298 6.23e-18 84.3
MS.gene006667.t1 AT2G31370 28.287 251 152 6 63 294 57 298 6.23e-18 84.3
MS.gene006667.t1 AT4G38900 44.554 101 50 1 195 289 392 492 1.43e-17 84.0
MS.gene006667.t1 AT5G04840 50.000 84 42 0 206 289 177 260 3.51e-17 81.3
MS.gene006667.t1 AT1G35490 41.509 106 56 2 185 289 158 258 8.39e-17 80.1
MS.gene006667.t1 AT1G35490 41.509 106 56 2 185 289 158 258 8.39e-17 80.1
MS.gene006667.t1 AT2G21230 41.748 103 54 1 195 291 368 470 4.97e-16 79.3
MS.gene006667.t1 AT2G21230 45.122 82 45 0 195 276 368 449 1.98e-14 74.3
MS.gene006667.t1 AT5G04840 51.389 72 35 0 206 277 177 248 9.42e-14 70.5
MS.gene006667.t1 AT5G07160 41.489 94 55 0 196 289 47 140 4.38e-12 63.5
MS.gene006667.t1 AT1G06850 70.455 44 13 0 197 240 148 191 4.83e-11 62.4
MS.gene006667.t1 AT2G12900 34.021 97 64 0 195 291 114 210 7.67e-11 62.4

Find 64 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACCACGGGTTGCATATT+TGG 0.213119 4.1:-26630347 MS.gene006667:CDS
ACGTCTGTGTGCCCCTCTTC+TGG 0.291136 4.1:+26631387 None:intergenic
TCATTATCACATCGTGGTTT+AGG 0.296604 4.1:+26629478 None:intergenic
GGTGAATGCAAACAGGAAAA+TGG 0.353861 4.1:-26631064 MS.gene006667:CDS
GGCCAAGTTGGTGTCATGTT+TGG 0.363718 4.1:+26631532 None:intergenic
GAATCTGATGAGGATGAAAT+TGG 0.366529 4.1:-26631085 MS.gene006667:CDS
ACGAAGTGTGACTTCATTAC+AGG 0.377047 4.1:-26630540 MS.gene006667:intron
ACAATCAACAAAACCCTTCA+TGG 0.391610 4.1:-26631438 MS.gene006667:CDS
GTTGGTGTCATGTTTGGAAT+TGG 0.398684 4.1:+26631538 None:intergenic
ATGTTTGGAATTGGAACCTT+TGG 0.398984 4.1:+26631547 None:intergenic
AATGATGAAGATGACAATAA+TGG 0.401593 4.1:-26631031 MS.gene006667:CDS
GAAAAGTTTGAAGCATTACT+TGG 0.449386 4.1:+26631463 None:intergenic
TGAAATTGGTGAATGCAAAC+AGG 0.473536 4.1:-26631071 MS.gene006667:CDS
AAGAGGGGCACACAGACGTT+CGG 0.489835 4.1:-26631383 MS.gene006667:CDS
GTAGCTGATGGTGCTGGTGG+TGG 0.496771 4.1:+26631214 None:intergenic
ATGGAGACAATGAGTTTGAA+AGG 0.498812 4.1:-26631303 MS.gene006667:CDS
TGAAGCATTACTTGGTGAGA+TGG 0.500952 4.1:+26631471 None:intergenic
TCACATCGTGGTTTAGGTGA+TGG 0.507950 4.1:+26629484 None:intergenic
TTATGATCAGAAGGAGTTGA+AGG 0.508247 4.1:+26631172 None:intergenic
TTCCAAACATGACACCAACT+TGG 0.521076 4.1:-26631534 MS.gene006667:CDS
CTGACCCCAAGAGGGTCAAA+AGG 0.522349 4.1:-26630976 MS.gene006667:intron
TGATGGAGCATTGTCGTCGT+AGG 0.526258 4.1:-26631327 MS.gene006667:CDS
TTTGGAATTGGAACCTTTGG+TGG 0.526554 4.1:+26631550 None:intergenic
TATGAAGGTCACTGAGTCAC+TGG 0.527916 4.1:+26631360 None:intergenic
CAAGACAAAATCTTCAAAGA+TGG 0.531158 4.1:-26630259 MS.gene006667:intron
CATCATCGATGCTTCTATGA+AGG 0.532117 4.1:+26631345 None:intergenic
TGGTGCTGGTGGTGGCATCA+TGG 0.538097 4.1:+26631222 None:intergenic
CTTCATAGAAGCATCGATGA+TGG 0.538192 4.1:-26631344 MS.gene006667:CDS
AGAAACTCGTCCACCCATGA+AGG 0.540302 4.1:+26631424 None:intergenic
GACTTCTCGTCCACCAGAAG+AGG 0.550382 4.1:-26631400 MS.gene006667:CDS
AGAGGGAGATAGAGAGGCTG+AGG 0.553494 4.1:-26629570 MS.gene006667:CDS
GAGCATTGTCGTCGTAGGGA+TGG 0.556038 4.1:-26631322 MS.gene006667:CDS
ACTTCTCGTCCACCAGAAGA+GGG 0.556593 4.1:-26631399 MS.gene006667:CDS
AGTATCAGTGCTGTCACCAC+GGG 0.561461 4.1:-26630359 MS.gene006667:CDS
CAATCAACAAAACCCTTCAT+GGG 0.563412 4.1:-26631437 MS.gene006667:CDS
TGATGACAAAGAGGAAGATG+AGG 0.565693 4.1:-26631140 MS.gene006667:CDS
TGACAAAGAGGAAGATGAGG+AGG 0.566303 4.1:-26631137 MS.gene006667:CDS
GAAGAAAATTCAGGCCAAGT+TGG 0.570645 4.1:+26631520 None:intergenic
TTAGTGTAGACGAGGTTTCG+AGG 0.573188 4.1:-26631252 MS.gene006667:CDS
CATTGAAGAGGGAGATAGAG+AGG 0.587016 4.1:-26629576 MS.gene006667:CDS
TTGATGCTGTTATGATCAGA+AGG 0.588109 4.1:+26631163 None:intergenic
TTGCATATTTGGATCATCAG+AGG 0.590830 4.1:-26630336 MS.gene006667:CDS
TATGATCAGAAGGAGTTGAA+GGG 0.593074 4.1:+26631173 None:intergenic
CTCATCAAGAAGCATTGAAG+AGG 0.593087 4.1:-26629588 MS.gene006667:CDS
TCTGTGTGCCCCTCTTCTGG+TGG 0.594474 4.1:+26631390 None:intergenic
GACAATGTAGCTGATGGTGC+TGG 0.596193 4.1:+26631208 None:intergenic
GTCCATGTTTAGTGTAGACG+AGG 0.601046 4.1:-26631260 MS.gene006667:CDS
CAGCATCAATGATGACAAAG+AGG 0.602367 4.1:-26631149 MS.gene006667:CDS
GATGGAGCATTGTCGTCGTA+GGG 0.605532 4.1:-26631326 MS.gene006667:CDS
TCAACAAAACCCTTCATGGG+TGG 0.609845 4.1:-26631434 MS.gene006667:CDS
AACCTCGTCTACACTAAACA+TGG 0.622608 4.1:+26631258 None:intergenic
AATGTAGCTGATGGTGCTGG+TGG 0.623330 4.1:+26631211 None:intergenic
AAGTATCAGTGCTGTCACCA+CGG 0.625333 4.1:-26630360 MS.gene006667:CDS
TATGGCTCAATTGCCACCAA+AGG 0.629635 4.1:-26631563 MS.gene006667:CDS
TCATCAAGAAGCATTGAAGA+GGG 0.631177 4.1:-26629587 MS.gene006667:CDS
GAAACTCGTCCACCCATGAA+GGG 0.631276 4.1:+26631425 None:intergenic
CTGCACAAAGATCAAGAGTG+AGG 0.635769 4.1:-26630589 MS.gene006667:CDS
ATTGAAGCATGAATCTGATG+AGG 0.673573 4.1:-26631095 MS.gene006667:CDS
GAATGCAAACAGGAAAATGG+AGG 0.685882 4.1:-26631061 MS.gene006667:CDS
CTTCTCGTCCACCAGAAGAG+GGG 0.695347 4.1:-26631398 MS.gene006667:CDS
CGTGGTTTAGGTGATGGAGA+TGG 0.696148 4.1:+26629490 None:intergenic
TGAGTATCATTATCACATCG+TGG 0.696934 4.1:+26629472 None:intergenic
TTAGATGACAATGTAGCTGA+TGG 0.701045 4.1:+26631202 None:intergenic
TGATCCAAATATGCAACCCG+TGG 0.752305 4.1:+26630343 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAATTAAACAATTTTG+AGG + chr4.1:26631018-26631037 None:intergenic 10.0%
!!! TGTTTAATTATTTTTACTAT+AGG - chr4.1:26631024-26631043 MS.gene006667:CDS 10.0%
!! GAATGAAAAAACTATATAAT+AGG - chr4.1:26631073-26631092 MS.gene006667:CDS 15.0%
!! CTATATAATAGGCTTATAAA+TGG - chr4.1:26631084-26631103 MS.gene006667:CDS 20.0%
!!! ATCTGTAAGTATTATTTTGA+AGG + chr4.1:26631350-26631369 None:intergenic 20.0%
!!! TAATACACATATTTGGTTTT+AGG + chr4.1:26630095-26630114 None:intergenic 20.0%
!!! TATAATGTATTGATGAATGA+AGG - chr4.1:26630617-26630636 MS.gene006667:intron 20.0%
!!! TATATATTGTTATTGATACG+TGG - chr4.1:26630868-26630887 MS.gene006667:intron 20.0%
! AACCAAATATGTGTATTACA+TGG - chr4.1:26630097-26630116 MS.gene006667:intron 25.0%
! AATGATGAAGATGACAATAA+TGG - chr4.1:26629972-26629991 MS.gene006667:intron 25.0%
! GAAAGTTTAGACAGAATTAT+AGG - chr4.1:26630921-26630940 MS.gene006667:intron 25.0%
!! TTATTAATTCTAGCTAGCTA+TGG - chr4.1:26630180-26630199 MS.gene006667:intron 25.0%
!!! ATCTTTGAAGATTTTGTCTT+GGG + chr4.1:26630745-26630764 None:intergenic 25.0%
!!! TTTTAAGGTTAGGCATTTTT+TGG + chr4.1:26629512-26629531 None:intergenic 25.0%
AGCCATGTAATACACATATT+TGG + chr4.1:26630102-26630121 None:intergenic 30.0%
ATACTACATGACAGTGTAAA+AGG + chr4.1:26630801-26630820 None:intergenic 30.0%
CAAGACAAAATCTTCAAAGA+TGG - chr4.1:26630744-26630763 MS.gene006667:intron 30.0%
GGTGAAATGAGAATATGTTA+AGG + chr4.1:26630780-26630799 None:intergenic 30.0%
GTCATTAAGATTACTACTAG+TGG - chr4.1:26631311-26631330 MS.gene006667:CDS 30.0%
TTACATTGAACATGACATGA+TGG - chr4.1:26630500-26630519 MS.gene006667:intron 30.0%
! GAAAAGTTTGAAGCATTACT+TGG + chr4.1:26629543-26629562 None:intergenic 30.0%
! TTTTGGTGAGAAGAAAATTC+AGG + chr4.1:26629495-26629514 None:intergenic 30.0%
!! CATCTTTGAAGATTTTGTCT+TGG + chr4.1:26630746-26630765 None:intergenic 30.0%
!! TGTTCTTGATGTTTTGTTGT+TGG + chr4.1:26631470-26631489 None:intergenic 30.0%
AAAAATTACTGACCCCAAGA+GGG - chr4.1:26630019-26630038 MS.gene006667:intron 35.0%
ACAATCAACAAAACCCTTCA+TGG - chr4.1:26629565-26629584 MS.gene006667:CDS 35.0%
ATGGAGACAATGAGTTTGAA+AGG - chr4.1:26629700-26629719 MS.gene006667:intron 35.0%
ATTGAAGCATGAATCTGATG+AGG - chr4.1:26629908-26629927 MS.gene006667:intron 35.0%
CAATCAACAAAACCCTTCAT+GGG - chr4.1:26629566-26629585 MS.gene006667:CDS 35.0%
CAGAGCAATTATTAGAGAAG+AGG - chr4.1:26631176-26631195 MS.gene006667:CDS 35.0%
GAATCTGATGAGGATGAAAT+TGG - chr4.1:26629918-26629937 MS.gene006667:intron 35.0%
TAGGCTTATAAATGGAACAG+CGG - chr4.1:26631092-26631111 MS.gene006667:CDS 35.0%
TATGATCAGAAGGAGTTGAA+GGG + chr4.1:26629833-26629852 None:intergenic 35.0%
TCACCATCACATGAATGAAA+AGG + chr4.1:26630344-26630363 None:intergenic 35.0%
TCATTATCACATCGTGGTTT+AGG + chr4.1:26631528-26631547 None:intergenic 35.0%
TGAAATTGGTGAATGCAAAC+AGG - chr4.1:26629932-26629951 MS.gene006667:intron 35.0%
TGAGTATCATTATCACATCG+TGG + chr4.1:26631534-26631553 None:intergenic 35.0%
TTAGATGACAATGTAGCTGA+TGG + chr4.1:26629804-26629823 None:intergenic 35.0%
TTATGATCAGAAGGAGTTGA+AGG + chr4.1:26629834-26629853 None:intergenic 35.0%
TTGATGCTGTTATGATCAGA+AGG + chr4.1:26629843-26629862 None:intergenic 35.0%
TTGCATATTTGGATCATCAG+AGG - chr4.1:26630667-26630686 MS.gene006667:intron 35.0%
! ATGTTTGGAATTGGAACCTT+TGG + chr4.1:26629459-26629478 None:intergenic 35.0%
! GTTCCTTTTCATTCATGTGA+TGG - chr4.1:26630338-26630357 MS.gene006667:CDS 35.0%
!! CGGAATTAGCTTCTATTTTG+TGG - chr4.1:26631122-26631141 MS.gene006667:CDS 35.0%
!! TACTTGGTGAGATGGTTTTA+AGG + chr4.1:26629527-26629546 None:intergenic 35.0%
!! TCATCAAGAAGCATTGAAGA+GGG - chr4.1:26631416-26631435 MS.gene006667:CDS 35.0%
!!! TGAAGGGTTTTGTTGATTGT+TGG + chr4.1:26629565-26629584 None:intergenic 35.0%
AACCTCGTCTACACTAAACA+TGG + chr4.1:26629748-26629767 None:intergenic 40.0%
AATGGAACAGCGGATAACAA+CGG - chr4.1:26631102-26631121 MS.gene006667:CDS 40.0%
ACGAAGTGTGACTTCATTAC+AGG - chr4.1:26630463-26630482 MS.gene006667:intron 40.0%
ATTGAAACATGAGCTAGCAG+TGG - chr4.1:26630286-26630305 MS.gene006667:CDS 40.0%
CAAAAATTACTGACCCCAAG+AGG - chr4.1:26630018-26630037 MS.gene006667:intron 40.0%
CAGCATCAATGATGACAAAG+AGG - chr4.1:26629854-26629873 MS.gene006667:intron 40.0%
CATCATCGATGCTTCTATGA+AGG + chr4.1:26629661-26629680 None:intergenic 40.0%
GAAGAAAATTCAGGCCAAGT+TGG + chr4.1:26629486-26629505 None:intergenic 40.0%
GAATGCAAACAGGAAAATGG+AGG - chr4.1:26629942-26629961 MS.gene006667:intron 40.0%
GCAATTGCAAGCTTAGTTAG+TGG + chr4.1:26630991-26631010 None:intergenic 40.0%
GGTGAATGCAAACAGGAAAA+TGG - chr4.1:26629939-26629958 MS.gene006667:intron 40.0%
TGATGACAAAGAGGAAGATG+AGG - chr4.1:26629863-26629882 MS.gene006667:intron 40.0%
TTCCAAACATGACACCAACT+TGG - chr4.1:26629469-26629488 MS.gene006667:CDS 40.0%
TTGTGGAACTTTGCATCGTA+CGG - chr4.1:26631139-26631158 MS.gene006667:CDS 40.0%
! CTCTTGGGGTCAGTAATTTT+TGG + chr4.1:26630020-26630039 None:intergenic 40.0%
! GAAGATTTTGTCTTGGGCTA+GGG + chr4.1:26630739-26630758 None:intergenic 40.0%
! TAGTACCTTTTGACCCTCTT+GGG + chr4.1:26630035-26630054 None:intergenic 40.0%
! TGAAGATTTTGTCTTGGGCT+AGG + chr4.1:26630740-26630759 None:intergenic 40.0%
! TGAAGCATTACTTGGTGAGA+TGG + chr4.1:26629535-26629554 None:intergenic 40.0%
! TTTGGAATTGGAACCTTTGG+TGG + chr4.1:26629456-26629475 None:intergenic 40.0%
!! CTCATCAAGAAGCATTGAAG+AGG - chr4.1:26631415-26631434 MS.gene006667:CDS 40.0%
!! CTTCATAGAAGCATCGATGA+TGG - chr4.1:26629659-26629678 MS.gene006667:intron 40.0%
!! GTTGGTGTCATGTTTGGAAT+TGG + chr4.1:26629468-26629487 None:intergenic 40.0%
!!! GGTGAGATGGTTTTAAGGTT+AGG + chr4.1:26629522-26629541 None:intergenic 40.0%
AAGTATCAGTGCTGTCACCA+CGG - chr4.1:26630643-26630662 MS.gene006667:intron 45.0%
CATTGAAGAGGGAGATAGAG+AGG - chr4.1:26631427-26631446 MS.gene006667:CDS 45.0%
CTGCACAAAGATCAAGAGTG+AGG - chr4.1:26630414-26630433 MS.gene006667:intron 45.0%
GTCCATGTTTAGTGTAGACG+AGG - chr4.1:26629743-26629762 MS.gene006667:intron 45.0%
TATGAAGGTCACTGAGTCAC+TGG + chr4.1:26629646-26629665 None:intergenic 45.0%
TCAACAAAACCCTTCATGGG+TGG - chr4.1:26629569-26629588 MS.gene006667:CDS 45.0%
TCACATCGTGGTTTAGGTGA+TGG + chr4.1:26631522-26631541 None:intergenic 45.0%
TGACAAAGAGGAAGATGAGG+AGG - chr4.1:26629866-26629885 MS.gene006667:intron 45.0%
TGATCCAAATATGCAACCCG+TGG + chr4.1:26630663-26630682 None:intergenic 45.0%
TTAGTGTAGACGAGGTTTCG+AGG - chr4.1:26629751-26629770 MS.gene006667:intron 45.0%
! AGTACCTTTTGACCCTCTTG+GGG + chr4.1:26630034-26630053 None:intergenic 45.0%
! GTAGTACCTTTTGACCCTCT+TGG + chr4.1:26630036-26630055 None:intergenic 45.0%
!! GGGGTCAGTAATTTTTGGAC+TGG + chr4.1:26630015-26630034 None:intergenic 45.0%
!!! AATTTAAAATAAATAAGTAA+AGG + chr4.1:26630245-26630264 None:intergenic 5.0%
!!! ATTTATTTTAAATTTTTTTC+TGG - chr4.1:26630251-26630270 MS.gene006667:intron 5.0%
ACATGAGCTAGCAGTGGTGA+TGG - chr4.1:26630292-26630311 MS.gene006667:CDS 50.0%
ACTTCTCGTCCACCAGAAGA+GGG - chr4.1:26629604-26629623 MS.gene006667:intron 50.0%
AGAAACTCGTCCACCCATGA+AGG + chr4.1:26629582-26629601 None:intergenic 50.0%
AGTATCAGTGCTGTCACCAC+GGG - chr4.1:26630644-26630663 MS.gene006667:intron 50.0%
CTAGTTGCAGACACAGCACA+TGG + chr4.1:26631283-26631302 None:intergenic 50.0%
GAAACTCGTCCACCCATGAA+GGG + chr4.1:26629581-26629600 None:intergenic 50.0%
! AATGTAGCTGATGGTGCTGG+TGG + chr4.1:26629795-26629814 None:intergenic 50.0%
! GACAATGTAGCTGATGGTGC+TGG + chr4.1:26629798-26629817 None:intergenic 50.0%
! GTCACCACGGGTTGCATATT+TGG - chr4.1:26630656-26630675 MS.gene006667:intron 50.0%
!! CGTGGTTTAGGTGATGGAGA+TGG + chr4.1:26631516-26631535 None:intergenic 50.0%
!! GATGGAGCATTGTCGTCGTA+GGG - chr4.1:26629677-26629696 MS.gene006667:intron 50.0%
!! GGCCAAGTTGGTGTCATGTT+TGG + chr4.1:26629474-26629493 None:intergenic 50.0%
!! TGATGGAGCATTGTCGTCGT+AGG - chr4.1:26629676-26629695 MS.gene006667:intron 50.0%
AGAGGGAGATAGAGAGGCTG+AGG - chr4.1:26631433-26631452 MS.gene006667:CDS 55.0%
CTGACCCCAAGAGGGTCAAA+AGG - chr4.1:26630027-26630046 MS.gene006667:intron 55.0%
CTTCTCGTCCACCAGAAGAG+GGG - chr4.1:26629605-26629624 MS.gene006667:intron 55.0%
GACTTCTCGTCCACCAGAAG+AGG - chr4.1:26629603-26629622 MS.gene006667:intron 55.0%
! AAGAGGGGCACACAGACGTT+CGG - chr4.1:26629620-26629639 MS.gene006667:intron 55.0%
! GAGCATTGTCGTCGTAGGGA+TGG - chr4.1:26629681-26629700 MS.gene006667:intron 55.0%
ACGTCTGTGTGCCCCTCTTC+TGG + chr4.1:26629619-26629638 None:intergenic 60.0%
TCTGTGTGCCCCTCTTCTGG+TGG + chr4.1:26629616-26629635 None:intergenic 60.0%
!! GTAGCTGATGGTGCTGGTGG+TGG + chr4.1:26629792-26629811 None:intergenic 60.0%
!! TGGTGCTGGTGGTGGCATCA+TGG + chr4.1:26629784-26629803 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 26629441 26631584 26629441 ID=MS.gene006667
chr4.1 mRNA 26629441 26631584 26629441 ID=MS.gene006667.t1;Parent=MS.gene006667
chr4.1 exon 26630977 26631584 26630977 ID=MS.gene006667.t1.exon1;Parent=MS.gene006667.t1
chr4.1 CDS 26630977 26631584 26630977 ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
chr4.1 exon 26630541 26630631 26630541 ID=MS.gene006667.t1.exon2;Parent=MS.gene006667.t1
chr4.1 CDS 26630541 26630631 26630541 ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
chr4.1 exon 26630260 26630386 26630260 ID=MS.gene006667.t1.exon3;Parent=MS.gene006667.t1
chr4.1 CDS 26630260 26630386 26630260 ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
chr4.1 exon 26629441 26629610 26629441 ID=MS.gene006667.t1.exon4;Parent=MS.gene006667.t1
chr4.1 CDS 26629441 26629610 26629441 ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
Gene Sequence

>MS.gene006667

ATGGCTCAATTGCCACCAAAGGTTCCAATTCCAAACATGACACCAACTTGGCCTGAATTTTCTTCTCACCAAAAAATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTACTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAATTTTTTTCTGGTGTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTATTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGCGGATAACAACGGAATTAGCTTCTATTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTACAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA
Protein sequence

>MS.gene006667.t1

MAQLPPKVPIPNMTPTWPEFSSHQKMPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV