AlfalfaGEDB | MS.gene006667

M. sativa cultivar XinJiangDaYe / MS.gene006667

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006667.t1	XP_003607550.1	96.4	331	9	1	1	331	1	328	4.10E-87	331.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006667.t1	F4IN23	60.0	250	89	4	1	250	1	239	3.9e-38	160.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006667.t1	G8A005	96.4	331	9	1	1	331	1	328	2.9e-87	331.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene006667.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene006667	MS.gene31409	PPI
MS.gene028849	MS.gene006667	PPI
MS.gene043474	MS.gene006667	PPI
MS.gene055759	MS.gene006667	PPI
MS.gene31407	MS.gene006667	PPI
MS.gene31409	MS.gene006667	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006667.t1	MTR_4g079500	98.489	331	2	1	1	331	1	328	0.0	669
MS.gene006667.t1	MTR_2g090900	63.188	345	91	13	1	331	1	323	1.57e-119	347
MS.gene006667.t1	MTR_2g090900	62.791	344	92	13	1	330	1	322	6.20e-119	347
MS.gene006667.t1	MTR_2g078370	40.000	230	95	14	1	203	1	214	9.90e-26	102
MS.gene006667.t1	MTR_8g088650	52.941	102	43	1	191	292	228	324	1.59e-23	100
MS.gene006667.t1	MTR_2g078360	60.000	75	20	2	251	316	1	74	4.33e-22	89.0
MS.gene006667.t1	MTR_5g075390	48.387	93	48	0	197	289	159	251	5.72e-20	89.7
MS.gene006667.t1	MTR_4g072090	37.589	141	65	2	174	291	314	454	6.57e-20	90.5
MS.gene006667.t1	MTR_2g099050	46.000	100	54	0	195	294	219	318	2.76e-19	88.6
MS.gene006667.t1	MTR_3g005230	49.425	87	44	0	206	292	136	222	2.98e-19	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene006667.t1	AT3G58120	55.556	351	114	12	1	331	1	329	5.11e-104	308
MS.gene006667.t1	AT2G42380	53.333	345	122	10	1	331	1	320	1.04e-100	299
MS.gene006667.t1	AT2G42380	49.855	345	123	11	1	331	1	309	2.66e-89	270
MS.gene006667.t1	AT3G58120	56.122	294	98	10	1	276	1	281	3.62e-87	263
MS.gene006667.t1	AT2G42380	53.873	284	104	7	1	276	1	265	5.90e-83	252
MS.gene006667.t1	AT2G42380	46.939	245	103	7	1	237	1	226	5.54e-53	174
MS.gene006667.t1	AT2G42380	46.939	245	103	7	1	237	1	226	5.54e-53	174
MS.gene006667.t1	AT1G58110	29.552	335	162	10	2	292	20	324	8.66e-29	114
MS.gene006667.t1	AT1G58110	29.552	335	162	10	2	292	20	324	8.66e-29	114
MS.gene006667.t1	AT1G43700	49.485	97	49	0	195	291	192	288	1.27e-20	91.3

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Find 64 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCGTCTACACTAAACA+TGG	0.622608	4.1:+26631258	None:intergenic
AAGAGGGGCACACAGACGTT+CGG	0.489835	4.1:-26631383	MS.gene006667:CDS
AAGTATCAGTGCTGTCACCA+CGG	0.625333	4.1:-26630360	MS.gene006667:CDS
AATGATGAAGATGACAATAA+TGG	0.401593	4.1:-26631031	MS.gene006667:CDS
AATGTAGCTGATGGTGCTGG+TGG	0.623330	4.1:+26631211	None:intergenic
ACAATCAACAAAACCCTTCA+TGG	0.391610	4.1:-26631438	MS.gene006667:CDS
ACGAAGTGTGACTTCATTAC+AGG	0.377047	4.1:-26630540	MS.gene006667:intron
ACGTCTGTGTGCCCCTCTTC+TGG	0.291136	4.1:+26631387	None:intergenic
ACTTCTCGTCCACCAGAAGA+GGG	0.556593	4.1:-26631399	MS.gene006667:CDS
AGAAACTCGTCCACCCATGA+AGG	0.540302	4.1:+26631424	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCCATGTAATACACATATT+TGG	+	chr4.1:26630102-26630121	None:intergenic	30.0%
ATACTACATGACAGTGTAAA+AGG	+	chr4.1:26630801-26630820	None:intergenic	30.0%
CAAGACAAAATCTTCAAAGA+TGG	-	chr4.1:26630744-26630763	MS.gene006667:intron	30.0%
GGTGAAATGAGAATATGTTA+AGG	+	chr4.1:26630780-26630799	None:intergenic	30.0%
GTCATTAAGATTACTACTAG+TGG	-	chr4.1:26631311-26631330	MS.gene006667:CDS	30.0%
TTACATTGAACATGACATGA+TGG	-	chr4.1:26630500-26630519	MS.gene006667:intron	30.0%
AAAAATTACTGACCCCAAGA+GGG	-	chr4.1:26630019-26630038	MS.gene006667:intron	35.0%
ACAATCAACAAAACCCTTCA+TGG	-	chr4.1:26629565-26629584	MS.gene006667:CDS	35.0%
ATGGAGACAATGAGTTTGAA+AGG	-	chr4.1:26629700-26629719	MS.gene006667:intron	35.0%
ATTGAAGCATGAATCTGATG+AGG	-	chr4.1:26629908-26629927	MS.gene006667:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	26629441	26631584	26629441	ID=MS.gene006667
chr4.1	mRNA	26629441	26631584	26629441	ID=MS.gene006667.t1;Parent=MS.gene006667
chr4.1	exon	26630977	26631584	26630977	ID=MS.gene006667.t1.exon1;Parent=MS.gene006667.t1
chr4.1	CDS	26630977	26631584	26630977	ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
chr4.1	exon	26630541	26630631	26630541	ID=MS.gene006667.t1.exon2;Parent=MS.gene006667.t1
chr4.1	CDS	26630541	26630631	26630541	ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
chr4.1	exon	26630260	26630386	26630260	ID=MS.gene006667.t1.exon3;Parent=MS.gene006667.t1
chr4.1	CDS	26630260	26630386	26630260	ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1
chr4.1	exon	26629441	26629610	26629441	ID=MS.gene006667.t1.exon4;Parent=MS.gene006667.t1
chr4.1	CDS	26629441	26629610	26629441	ID=cds.MS.gene006667.t1;Parent=MS.gene006667.t1

Gene Sequence

>MS.gene006667

ATGGCTCAATTGCCACCAAAGGTTCCAATTCCAAACATGACACCAACTTGGCCTGAATTTTCTTCTCACCAAAAAATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTACTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAATTTTTTTCTGGTGTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTATTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGCGGATAACAACGGAATTAGCTTCTATTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTACAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAAACCACGATGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA

Protein sequence

>MS.gene006667.t1

MAQLPPKVPIPNMTPTWPEFSSHQKMPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAYLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQQNIKNNATAAVVSPSPSPKPRCDNDTHIENEHLINV