AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055759

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055759.t1 MTR_2g090900 95.758 330 6 2 1 330 1 322 0.0 638
MS.gene055759.t1 MTR_2g090900 95.770 331 6 2 1 331 1 323 0.0 638
MS.gene055759.t1 MTR_4g079500 62.931 348 92 14 1 331 1 328 6.52e-125 361
MS.gene055759.t1 MTR_2g078370 38.938 226 105 10 1 205 1 214 3.29e-29 112
MS.gene055759.t1 MTR_8g088650 35.094 265 145 8 44 294 73 324 3.82e-28 112
MS.gene055759.t1 MTR_2g078360 67.647 68 16 1 253 314 1 68 1.49e-23 93.2
MS.gene055759.t1 MTR_5g075390 48.936 94 48 0 198 291 158 251 2.50e-20 90.9
MS.gene055759.t1 MTR_4g072090 44.828 116 56 1 197 312 358 465 3.78e-20 91.3
MS.gene055759.t1 MTR_3g005230 51.724 87 42 0 208 294 136 222 6.34e-20 87.8
MS.gene055759.t1 MTR_2g099050 44.737 114 58 2 197 310 219 327 3.31e-19 88.2
MS.gene055759.t1 MTR_3g467120 46.237 93 50 0 199 291 177 269 1.82e-18 85.5
MS.gene055759.t1 MTR_6g034945 46.000 100 54 0 197 296 149 248 6.53e-18 83.2
MS.gene055759.t1 MTR_3g094020 45.745 94 51 0 198 291 107 200 2.25e-17 81.6
MS.gene055759.t1 MTR_4g072090 47.561 82 43 0 197 278 358 439 1.89e-15 77.0
MS.gene055759.t1 MTR_1g023690 48.980 98 46 2 198 293 386 481 1.64e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055759.t1 AT3G58120 59.249 346 109 10 1 331 1 329 8.07e-121 351
MS.gene055759.t1 AT2G42380 57.225 346 107 8 1 331 1 320 7.80e-115 335
MS.gene055759.t1 AT2G42380 53.757 346 108 9 1 331 1 309 2.66e-103 305
MS.gene055759.t1 AT3G58120 58.020 293 96 8 1 278 1 281 6.63e-100 296
MS.gene055759.t1 AT2G42380 56.701 291 87 7 1 278 1 265 8.18e-93 277
MS.gene055759.t1 AT2G42380 49.206 252 89 7 1 239 1 226 9.33e-62 197
MS.gene055759.t1 AT2G42380 49.206 252 89 7 1 239 1 226 9.33e-62 197
MS.gene055759.t1 AT1G58110 30.448 335 161 11 2 294 20 324 1.77e-27 110
MS.gene055759.t1 AT1G58110 30.448 335 161 11 2 294 20 324 1.77e-27 110
MS.gene055759.t1 AT1G43700 46.491 114 56 1 185 293 175 288 5.35e-21 92.4
MS.gene055759.t1 AT4G38900 48.421 95 49 0 197 291 392 486 5.41e-20 91.3
MS.gene055759.t1 AT4G38900 48.421 95 49 0 197 291 392 486 5.41e-20 91.3
MS.gene055759.t1 AT5G04840 29.276 304 163 8 2 296 5 265 2.14e-19 87.4
MS.gene055759.t1 AT2G40620 46.316 95 51 0 197 291 146 240 3.26e-19 87.8
MS.gene055759.t1 AT1G06850 48.387 93 48 0 199 291 148 240 1.10e-18 85.9
MS.gene055759.t1 AT1G06070 46.316 95 51 0 197 291 208 302 1.33e-18 86.7
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.22e-18 84.7
MS.gene055759.t1 AT2G21230 46.392 97 52 0 197 293 368 464 4.52e-18 85.5
MS.gene055759.t1 AT2G21230 46.392 97 52 0 197 293 368 464 4.52e-18 85.5
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.68e-18 84.7
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.68e-18 84.7
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.68e-18 84.7
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.68e-18 84.7
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.68e-18 84.7
MS.gene055759.t1 AT2G31370 31.174 247 143 5 62 291 57 293 4.68e-18 84.7
MS.gene055759.t1 AT4G38900 45.545 101 49 1 197 291 392 492 8.28e-18 84.7
MS.gene055759.t1 AT1G35490 28.226 248 133 7 46 291 54 258 5.21e-17 80.5
MS.gene055759.t1 AT1G35490 28.226 248 133 7 46 291 54 258 5.21e-17 80.5
MS.gene055759.t1 AT5G04840 29.371 286 150 8 2 278 5 247 4.14e-16 77.0
MS.gene055759.t1 AT2G21230 42.718 103 53 1 197 293 368 470 1.00e-15 78.2
MS.gene055759.t1 AT2G21230 46.341 82 44 0 197 278 368 449 3.26e-14 73.6
MS.gene055759.t1 AT5G07160 41.237 97 57 0 195 291 44 140 2.93e-12 64.3
MS.gene055759.t1 AT1G06850 68.889 45 14 0 198 242 147 191 4.97e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGACATGTTTGGGATCTT+AGG 0.259620 2.1:+10050409 None:intergenic
GTTTGTAGTGACAATGTTAT+TGG 0.263094 2.1:+10050330 None:intergenic
GCATTAGAATCTTGGCAAAT+AGG 0.275046 2.1:-10049419 MS.gene055759:intron
GAGAAGAAGGAAAATGATTT+AGG 0.296863 2.1:-10049986 MS.gene055759:CDS
GCCAACTTGGTGACATGTTT+GGG 0.333815 2.1:+10050401 None:intergenic
CATTGGCTTTCTACCTCATC+AGG 0.351950 2.1:+10049920 None:intergenic
GCGTAGTGTAACTTCATTGC+AGG 0.377738 2.1:-10049343 MS.gene055759:intron
GGCCAACTTGGTGACATGTT+TGG 0.381627 2.1:+10050400 None:intergenic
GACAATGTTATTGGTTGAAA+TGG 0.385822 2.1:+10050339 None:intergenic
TCTGTTTGAGAATCACATAT+TGG 0.388915 2.1:+10047853 None:intergenic
CCATCTTCTTGAGGTTCTGA+TGG 0.391631 2.1:+10047917 None:intergenic
GAAGAATAAACAAGAGAAGA+AGG 0.396694 2.1:-10049999 MS.gene055759:CDS
ACCAATGCTTGATGATTGTC+GGG 0.399558 2.1:-10050197 MS.gene055759:CDS
AAGAAGATGGAAAATGCTAA+TGG 0.406779 2.1:-10047904 MS.gene055759:CDS
ATCAGAATCAGAACCCTTCA+TGG 0.433073 2.1:-10050303 MS.gene055759:CDS
GGAGATAGAAAGATTAAGAC+AGG 0.441141 2.1:-10047947 MS.gene055759:CDS
GCATTGTTGTTGTTACTTTG+AGG 0.444336 2.1:+10049878 None:intergenic
CACCAATGCTTGATGATTGT+CGG 0.462711 2.1:-10050198 MS.gene055759:CDS
TTCTGATCTGAAGGACTCGA+AGG 0.485897 2.1:+10050049 None:intergenic
GGTAGAAAGCCAATGCAAAC+AGG 0.488493 2.1:-10049912 MS.gene055759:CDS
CCATCAGAACCTCAAGAAGA+TGG 0.490491 2.1:-10047917 MS.gene055759:CDS
ATGTTTAGTGATGAAATATC+TGG 0.505923 2.1:-10050109 MS.gene055759:CDS
TGAAAAGCTTGTCTTGTGCA+AGG 0.507196 2.1:+10049056 None:intergenic
TTATTGGTTGAAATGGATGT+TGG 0.515770 2.1:+10050346 None:intergenic
TTGACAAAATTCTGATCTGA+AGG 0.516864 2.1:+10050040 None:intergenic
CCCCGACAATCATCAAGCAT+TGG 0.530465 2.1:+10050196 None:intergenic
TTTAGGAGAGATGAAGAAAG+AGG 0.538946 2.1:-10049969 MS.gene055759:CDS
AGGAACTCATCCACCCATGA+AGG 0.539506 2.1:+10050289 None:intergenic
GAAAAGCTTGTCTTGTGCAA+GGG 0.539760 2.1:+10049057 None:intergenic
TCATCAAGAGGCACTGAAGA+GGG 0.563124 2.1:-10047968 MS.gene055759:CDS
CTGATCCAAAGAGAGTCAAA+AGG 0.572655 2.1:-10049832 MS.gene055759:intron
TTCGATGAAGACAACGTTGG+TGG 0.575587 2.1:+10050073 None:intergenic
TCCCAAACATGTCACCAAGT+TGG 0.580152 2.1:-10050402 MS.gene055759:CDS
AGATATTTCATCACTAAACA+TGG 0.586033 2.1:+10050111 None:intergenic
GACATGTTTGGGATCTTAGG+AGG 0.588767 2.1:+10050412 None:intergenic
CTCATCAAGAGGCACTGAAG+AGG 0.590175 2.1:-10047969 MS.gene055759:CDS
CAAGGCGAGGTGCTCATCGA+AGG 0.594155 2.1:-10050252 MS.gene055759:CDS
TTTACATGCAGCTCATCAAG+AGG 0.601727 2.1:-10047980 MS.gene055759:intron
GAATCAGAACCCTTCATGGG+TGG 0.607660 2.1:-10050299 MS.gene055759:CDS
ATTGAAATATGAACCTGATG+AGG 0.608223 2.1:-10049933 MS.gene055759:CDS
TCAGAATCAGAACCCTTCAT+GGG 0.609308 2.1:-10050302 MS.gene055759:CDS
TCTGATCTGAAGGACTCGAA+GGG 0.610267 2.1:+10050050 None:intergenic
ATGAGCACCTCGCCTTGCCG+AGG 0.614435 2.1:+10050258 None:intergenic
GGAACTCATCCACCCATGAA+GGG 0.626852 2.1:+10050290 None:intergenic
CAAATAGGCAATCAGCACAA+AGG 0.647617 2.1:-10049404 MS.gene055759:CDS
GCGAGGTGCTCATCGAAGGT+CGG 0.657525 2.1:-10050248 MS.gene055759:CDS
CAGCACAAAGGTCACGTGTG+AGG 0.661809 2.1:-10049392 MS.gene055759:CDS
GCCTTGCCGAGGAAAAGTCG+AGG 0.688307 2.1:+10050269 None:intergenic
GATTGTCGGGGTAAACACGA+TGG 0.708511 2.1:-10050184 MS.gene055759:CDS
GGGTTCGATGAAGACAACGT+TGG 0.721008 2.1:+10050070 None:intergenic
CCAATGCTTGATGATTGTCG+GGG 0.745183 2.1:-10050196 MS.gene055759:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATTAATAATAATTAC+TGG - chr2.1:10050138-10050157 MS.gene055759:CDS 10.0%
!! AATTAATGAAAAACAATGAT+TGG + chr2.1:10050164-10050183 None:intergenic 15.0%
!! AGATAAAAATTAAAACATGT+AGG - chr2.1:10048470-10048489 MS.gene055759:intron 15.0%
!! ATATTTGAAAAATACTTAGT+TGG + chr2.1:10050003-10050022 None:intergenic 15.0%
!! ATGAAATGACAAAATAAAAA+TGG - chr2.1:10049351-10049370 MS.gene055759:CDS 15.0%
!! CTAAATAGTATTAACTATTA+AGG + chr2.1:10050196-10050215 None:intergenic 15.0%
!! TTTAAATCTGATAAGTAAAA+AGG + chr2.1:10050060-10050079 None:intergenic 15.0%
!! AAATTTAATAAGAGTGAAAC+AGG - chr2.1:10049448-10049467 MS.gene055759:intron 20.0%
!! AAGTATTTGTACATTCTATT+TGG + chr2.1:10049976-10049995 None:intergenic 20.0%
!! AATTGAAATATTGTTGATCT+TGG - chr2.1:10048717-10048736 MS.gene055759:intron 20.0%
!! GTTAGTTAAAATAGTTTCTT+AGG - chr2.1:10049703-10049722 MS.gene055759:intron 20.0%
!! TATATTAACTACTTTGTGAT+GGG + chr2.1:10049564-10049583 None:intergenic 20.0%
!!! ATGTTGGCATAATATTTTTT+TGG + chr2.1:10047893-10047912 None:intergenic 20.0%
!!! CATAATATTTTTTTGGTGTT+TGG + chr2.1:10047886-10047905 None:intergenic 20.0%
! ACTAAAAAATTGTGTCATGT+GGG + chr2.1:10048611-10048630 None:intergenic 25.0%
! AGATATTTCATCACTAAACA+TGG + chr2.1:10048144-10048163 None:intergenic 25.0%
! ATATATATTTGGACAGTAGA+AGG + chr2.1:10049073-10049092 None:intergenic 25.0%
! ATATTAACTACTTTGTGATG+GGG + chr2.1:10049563-10049582 None:intergenic 25.0%
! ATGTTTAGTGATGAAATATC+TGG - chr2.1:10048143-10048162 MS.gene055759:intron 25.0%
! ATTTGCAGTACTATAATATC+TGG - chr2.1:10048979-10048998 MS.gene055759:intron 25.0%
! GTATATTAACTACTTTGTGA+TGG + chr2.1:10049565-10049584 None:intergenic 25.0%
! TACTAAAAAATTGTGTCATG+TGG + chr2.1:10048612-10048631 None:intergenic 25.0%
!!! CTCTTGAAATTTTGATACAT+AGG + chr2.1:10049665-10049684 None:intergenic 25.0%
!!! GTTTTTTTGCATTAGAATCT+TGG - chr2.1:10048825-10048844 MS.gene055759:intron 25.0%
AAGAAGATGGAAAATGCTAA+TGG - chr2.1:10050348-10050367 MS.gene055759:CDS 30.0%
ACTATTTAGACACATAGCTA+GGG - chr2.1:10050207-10050226 MS.gene055759:CDS 30.0%
ACTGTCCAAATATATATCGA+AGG - chr2.1:10049076-10049095 MS.gene055759:CDS 30.0%
ATTATTGTGCTTACTCGTTA+GGG - chr2.1:10049825-10049844 MS.gene055759:intron 30.0%
ATTGAAATATGAACCTGATG+AGG - chr2.1:10048319-10048338 MS.gene055759:intron 30.0%
CAGTGCTATATATAGCTTAT+TGG + chr2.1:10049387-10049406 None:intergenic 30.0%
GAAGAATAAACAAGAGAAGA+AGG - chr2.1:10048253-10048272 MS.gene055759:intron 30.0%
GAGAAGAAGGAAAATGATTT+AGG - chr2.1:10048266-10048285 MS.gene055759:intron 30.0%
GTTTGTAGTGACAATGTTAT+TGG + chr2.1:10047925-10047944 None:intergenic 30.0%
TACTATTTAGACACATAGCT+AGG - chr2.1:10050206-10050225 MS.gene055759:CDS 30.0%
TATTAACTACTTTGTGATGG+GGG + chr2.1:10049562-10049581 None:intergenic 30.0%
TCTGTTTGAGAATCACATAT+TGG + chr2.1:10050402-10050421 None:intergenic 30.0%
TTCAGCCTTCGATATATATT+TGG + chr2.1:10049084-10049103 None:intergenic 30.0%
TTGACAAAATTCTGATCTGA+AGG + chr2.1:10048215-10048234 None:intergenic 30.0%
! GACAATGTTATTGGTTGAAA+TGG + chr2.1:10047916-10047935 None:intergenic 30.0%
! TTATTGGTTGAAATGGATGT+TGG + chr2.1:10047909-10047928 None:intergenic 30.0%
!! AATTACCTTTTGACTCTCTT+TGG + chr2.1:10048428-10048447 None:intergenic 30.0%
!!! TTTTGGTGTTTGGAAAAATC+TGG + chr2.1:10047876-10047895 None:intergenic 30.0%
AAAAGGAGCTAACTACTTTG+AGG + chr2.1:10050043-10050062 None:intergenic 35.0%
AGTCTACTAACATTTGAGCT+CGG - chr2.1:10049591-10049610 MS.gene055759:intron 35.0%
GAATCAGTTGCAAAACTCAA+AGG + chr2.1:10048803-10048822 None:intergenic 35.0%
GATTATTGTGCTTACTCGTT+AGG - chr2.1:10049824-10049843 MS.gene055759:intron 35.0%
GCATTAGAATCTTGGCAAAT+AGG - chr2.1:10048833-10048852 MS.gene055759:intron 35.0%
GGAGATAGAAAGATTAAGAC+AGG - chr2.1:10050305-10050324 MS.gene055759:CDS 35.0%
GTTGGTCAAGTATTCACTAT+TGG - chr2.1:10049419-10049438 MS.gene055759:intron 35.0%
TATGTTTGTGTGCGTTCAAA+TGG + chr2.1:10049868-10049887 None:intergenic 35.0%
TGATCCAAAAATGCAACTCT+TGG + chr2.1:10049122-10049141 None:intergenic 35.0%
TTTAGGAGAGATGAAGAAAG+AGG - chr2.1:10048283-10048302 MS.gene055759:intron 35.0%
! ATCTCCAAGAGTTGCATTTT+TGG - chr2.1:10049115-10049134 MS.gene055759:CDS 35.0%
! CAAGACAAGCTTTTCAAAGA+TGG - chr2.1:10049203-10049222 MS.gene055759:intron 35.0%
! GTGAATTTTCCTGTTTGCAT+TGG + chr2.1:10048352-10048371 None:intergenic 35.0%
! TAGCATTTTCCATCTTCTTG+AGG + chr2.1:10050347-10050366 None:intergenic 35.0%
!! ATTTCATGCTTGACTTGTCA+TGG + chr2.1:10049338-10049357 None:intergenic 35.0%
!! GCATTGTTGTTGTTACTTTG+AGG + chr2.1:10048377-10048396 None:intergenic 35.0%
!! TTGAGTTTTGCAACTGATTC+TGG - chr2.1:10048803-10048822 MS.gene055759:intron 35.0%
!!! ACATATTGGCTTTTGTGATG+GGG + chr2.1:10050388-10050407 None:intergenic 35.0%
!!! CACATATTGGCTTTTGTGAT+GGG + chr2.1:10050389-10050408 None:intergenic 35.0%
!!! TCACATATTGGCTTTTGTGA+TGG + chr2.1:10050390-10050409 None:intergenic 35.0%
ATCAGAATCAGAACCCTTCA+TGG - chr2.1:10047949-10047968 MS.gene055759:CDS 40.0%
CAAATAGGCAATCAGCACAA+AGG - chr2.1:10048848-10048867 MS.gene055759:intron 40.0%
CTGATCCAAAGAGAGTCAAA+AGG - chr2.1:10048420-10048439 MS.gene055759:intron 40.0%
GAAAAGCTTGTCTTGTGCAA+GGG + chr2.1:10049198-10049217 None:intergenic 40.0%
GCACTGTAGTTACTTGAAGT+TGG - chr2.1:10049401-10049420 MS.gene055759:CDS 40.0%
GGGCACATGATCACATAAAT+AGG + chr2.1:10049542-10049561 None:intergenic 40.0%
GTCTACTAACATTTGAGCTC+GGG - chr2.1:10049592-10049611 MS.gene055759:intron 40.0%
GTGAAAGAATATGTACCCTG+TGG - chr2.1:10049301-10049320 MS.gene055759:intron 40.0%
TCAGAATCAGAACCCTTCAT+GGG - chr2.1:10047950-10047969 MS.gene055759:CDS 40.0%
TGAAAAGCTTGTCTTGTGCA+AGG + chr2.1:10049199-10049218 None:intergenic 40.0%
TGTGTGCAGTCTCATAACTA+TGG + chr2.1:10049475-10049494 None:intergenic 40.0%
TTGGAAAAATCTGGCCAACT+TGG + chr2.1:10047867-10047886 None:intergenic 40.0%
TTTACATGCAGCTCATCAAG+AGG - chr2.1:10050272-10050291 MS.gene055759:CDS 40.0%
! ACCAATGCTTGATGATTGTC+GGG - chr2.1:10048055-10048074 MS.gene055759:intron 40.0%
! CACCAATGCTTGATGATTGT+CGG - chr2.1:10048054-10048073 MS.gene055759:intron 40.0%
! TGACTTGTCATGGTCTCATT+AGG + chr2.1:10049328-10049347 None:intergenic 40.0%
!! TTTTGTGATGGGGATGGTAA+GGG + chr2.1:10050378-10050397 None:intergenic 40.0%
ATGGTCTCATTAGGACCACA+GGG + chr2.1:10049319-10049338 None:intergenic 45.0%
CCATCAGAACCTCAAGAAGA+TGG - chr2.1:10050335-10050354 MS.gene055759:CDS 45.0%
GCGTAGTGTAACTTCATTGC+AGG - chr2.1:10048909-10048928 MS.gene055759:intron 45.0%
GGTAGAAAGCCAATGCAAAC+AGG - chr2.1:10048340-10048359 MS.gene055759:intron 45.0%
TCCCAAACATGTCACCAAGT+TGG - chr2.1:10047850-10047869 MS.gene055759:CDS 45.0%
TCTGATCTGAAGGACTCGAA+GGG + chr2.1:10048205-10048224 None:intergenic 45.0%
TTCGATGAAGACAACGTTGG+TGG + chr2.1:10048182-10048201 None:intergenic 45.0%
TTCTGATCTGAAGGACTCGA+AGG + chr2.1:10048206-10048225 None:intergenic 45.0%
! CCAATGCTTGATGATTGTCG+GGG - chr2.1:10048056-10048075 MS.gene055759:intron 45.0%
! CCATCTTCTTGAGGTTCTGA+TGG + chr2.1:10050338-10050357 None:intergenic 45.0%
! GACATGTTTGGGATCTTAGG+AGG + chr2.1:10047843-10047862 None:intergenic 45.0%
! GCCAACTTGGTGACATGTTT+GGG + chr2.1:10047854-10047873 None:intergenic 45.0%
! GGTGACATGTTTGGGATCTT+AGG + chr2.1:10047846-10047865 None:intergenic 45.0%
! TGAGTTCCTCGACTTTTCCT+CGG - chr2.1:10047977-10047996 MS.gene055759:intron 45.0%
!! CATTGGCTTTCTACCTCATC+AGG + chr2.1:10048335-10048354 None:intergenic 45.0%
!! CTTTTGTGATGGGGATGGTA+AGG + chr2.1:10050379-10050398 None:intergenic 45.0%
!! TCATCAAGAGGCACTGAAGA+GGG - chr2.1:10050284-10050303 MS.gene055759:CDS 45.0%
!!! ATTGGCTTTTGTGATGGGGA+TGG + chr2.1:10050384-10050403 None:intergenic 45.0%
AGGAACTCATCCACCCATGA+AGG + chr2.1:10047966-10047985 None:intergenic 50.0%
CATGGTCTCATTAGGACCAC+AGG + chr2.1:10049320-10049339 None:intergenic 50.0%
CCCCGACAATCATCAAGCAT+TGG + chr2.1:10048059-10048078 None:intergenic 50.0%
GAATCAGAACCCTTCATGGG+TGG - chr2.1:10047953-10047972 MS.gene055759:CDS 50.0%
GATTGTCGGGGTAAACACGA+TGG - chr2.1:10048068-10048087 MS.gene055759:intron 50.0%
GGAACTCATCCACCCATGAA+GGG + chr2.1:10047965-10047984 None:intergenic 50.0%
GGGTTCGATGAAGACAACGT+TGG + chr2.1:10048185-10048204 None:intergenic 50.0%
! GGCCAACTTGGTGACATGTT+TGG + chr2.1:10047855-10047874 None:intergenic 50.0%
!! CTCATCAAGAGGCACTGAAG+AGG - chr2.1:10050283-10050302 MS.gene055759:CDS 50.0%
!! GGAGCTAACTACTTTGAGGC+AGG + chr2.1:10050039-10050058 None:intergenic 50.0%
CAGCACAAAGGTCACGTGTG+AGG - chr2.1:10048860-10048879 MS.gene055759:intron 55.0%
! TCCTCGACTTTTCCTCGGCA+AGG - chr2.1:10047982-10048001 MS.gene055759:intron 55.0%
GCCTTGCCGAGGAAAAGTCG+AGG + chr2.1:10047986-10048005 None:intergenic 60.0%
! CAAGGCGAGGTGCTCATCGA+AGG - chr2.1:10048000-10048019 MS.gene055759:intron 60.0%
! GACTTTTCCTCGGCAAGGCG+AGG - chr2.1:10047987-10048006 MS.gene055759:intron 60.0%
! GCGAGGTGCTCATCGAAGGT+CGG - chr2.1:10048004-10048023 MS.gene055759:intron 60.0%
ATGAGCACCTCGCCTTGCCG+AGG + chr2.1:10047997-10048016 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10047828 10050446 10047828 ID=MS.gene055759
chr2.1 mRNA 10047828 10050446 10047828 ID=MS.gene055759.t1;Parent=MS.gene055759
chr2.1 exon 10049833 10050446 10049833 ID=MS.gene055759.t1.exon1;Parent=MS.gene055759.t1
chr2.1 CDS 10049833 10050446 10049833 ID=cds.MS.gene055759.t1;Parent=MS.gene055759.t1
chr2.1 exon 10049344 10049434 10049344 ID=MS.gene055759.t1.exon2;Parent=MS.gene055759.t1
chr2.1 CDS 10049344 10049434 10049344 ID=cds.MS.gene055759.t1;Parent=MS.gene055759.t1
chr2.1 exon 10049050 10049176 10049050 ID=MS.gene055759.t1.exon3;Parent=MS.gene055759.t1
chr2.1 CDS 10049050 10049176 10049050 ID=cds.MS.gene055759.t1;Parent=MS.gene055759.t1
chr2.1 exon 10047828 10047991 10047828 ID=MS.gene055759.t1.exon4;Parent=MS.gene055759.t1
chr2.1 CDS 10047828 10047991 10047828 ID=cds.MS.gene055759.t1;Parent=MS.gene055759.t1
Gene Sequence

>MS.gene055759

ATGGCACAATTACCTCCTAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTTTCCAAACACCAAAAAAATATTATGCCAACATCCATTTCAACCAATAACATTGTCACTACAAACAATTATCAGAATCAGAACCCTTCATGGGTGGATGAGTTCCTCGACTTTTCCTCGGCAAGGCGAGGTGCTCATCGAAGGTCGGTCAGCGATTCAGTCACATTCTTAGAAACACCAATGCTTGATGATTGTCGGGGTAAACACGATGGTAACAACAATGACAACGAGTTCGACAAGTTTGATGATGAACAATTTTTGTCCATGTTTAGTGATGAAATATCTGGTGTCAATAACATGCCACCAACGTTGTCTTCATCGAACCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGATAATGAGAAAGAGAAGAATAAACAAGAGAAGAAGGAAAATGATTTAGGAGAGATGAAGAAAGAGGAAGATGAGAAGCAATTGAAATATGAACCTGATGAGGTAGAAAGCCAATGCAAACAGGAAAATTCACAGCCTCAAAGTAACAACAACAATGCAACTTCTTCAAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGGTAATTATCAAACACTTCTATATACTATAGATAAAAATTAAAACATGTAGGATGAAATTTAAAACAATTTTTTTTTTCTTCTAATTTTCTTGCATAATTCAACTTTTTCTAATAGTATATTTTTATCTATATACATATGCTTAATTTTGCTAATAAACTTGCAAAGCCCACATGACACAATTTTTTAGTACTTCATTATTGTAGATTATTTTTTTAAGCATGATTTTGATATTCTAGTTGAAATTGTTGATTAGTTTTCATGCATTGCTCTTTATAATTGAAATATTGTTGATCTTGGTTTCTTGAACTTTTTATATATTTTTTTCTTTGTTTGTAAATGAAAATAAAACATTTTTTTCCTTTGAGTTTTGCAACTGATTCTGGTTTTTTTGCATTAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGTAGTGTAACTTCATTGCAGGTTTGTTACGTAACATAACATGATTTCACTATAATTTTTGTATTATTTATTTGCAGTACTATAATATCTGGAAATTTAATGTATTATGTACTATATAGTAGAAATGATCAAATAATAATGTTATTGACTTTTTGTTATTCCTTCTACTGTCCAAATATATATCGAAGGCTGAAGTTTCAGTGCTATCTCCAAGAGTTGCATTTTTGGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTCAAGCAAAGAATTGCAGCCCTTGCACAAGACAAGCTTTTCAAAGATGGTAATTTAATTATTTCTTCAATACTATATTGTTCAATTTAATTATTATTATTACTAATTAGTGAATTTATATATGAGTGAAAGAATATGTACCCTGTGGTCCTAATGAGACCATGACAAGTCAAGCATGAAATGACAAAATAAAAATGGAGAAAACACACCAATAAGCTATATATAGCACTGTAGTTACTTGAAGTTGGTCAAGTATTCACTATTGGTAAATTAAATTTAATAAGAGTGAAACAGGTCCATAGTTATGAGACTGCACACAGAGTTATAATGAATTTAGTGAATGTGTTTTTGTTTGCATGCACGCCTATTTATGTGATCATGTGCCCCCATCACAAAGTAGTTAATATACTCAAAAAGTCTACTAACATTTGAGCTCGGGTAATAGTCATTTTTGTCTTTGAATATGTAACAAATAAGCATAATAGTCCTATGTATCAAAATTTCAAGAGTTTTTAATTGTACATTATGTTAGTTAAAATAGTTTCTTAGGTTAAAATGTCTCGTTAATATTGTAATAATAGTTCTTCAATATACTTATTTATTGTCATATCAATCTCTATATAAAAAGAATTAATATCAATATTGAATGATTATTGTGCTTACTCGTTAGGGACTAAAATGACTATACTCCATTTGAACGCACACAAACATAAAAATACTATCTTTTAATAATTTTAAAAATATATATTATTTTATTTTATTTCTTTTTTCATCTTTTATTAAGTGTGTGAATGTGTCCAAATAGAATGTACAAATACTTGTGACCAACTAAGTATTTTTCAAATATACTTGTCTAGTGTCCTGCCTCAAAGTAGTTAGCTCCTTTTTACTTATCAGATTTAAAGTTGTTTTGTACTGTTAGTAGTTGTTATTTTTTAAAGTTTAATGTAACATTAGTTATTGTTTTATTAATAATAATTACTGGCCAATCATTGTTTTTCATTAATTATTGAATGTCCTTAATAGTTAATACTATTTAGACACATAGCTAGGGTGAAGCTTCAGATATTGTACTTACTATAATGACATTTATATATTTACATGCAGCTCATCAAGAGGCACTGAAGAGGGAGATAGAAAGATTAAGACAGGTATATCACCATCAGAACCTCAAGAAGATGGAAAATGCTAATGGATCACCCTTACCATCCCCATCACAAAAGCCAATATGTGATTCTCAAACAGAAAGCGAACAACTACTCAATGTATGA
Protein sequence

>MS.gene055759.t1

MAQLPPKIPNMSPSWPDFSKHQKNIMPTSISTNNIVTTNNYQNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLETPMLDDCRGKHDGNNNDNEFDKFDDEQFLSMFSDEISGVNNMPPTLSSSNPSSPSDQNFVNDDNEKEKNKQEKKENDLGEMKKEEDEKQLKYEPDEVESQCKQENSQPQSNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKLFKDAHQEALKREIERLRQVYHHQNLKKMENANGSPLPSPSQKPICDSQTESEQLLNV