Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31407.t1 | KEH39224.1 | 94.1 | 289 | 9 | 2 | 1 | 289 | 43 | 323 | 1.60E-84 | 322.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31407.t1 | F4IN23 | 65.2 | 290 | 88 | 3 | 2 | 289 | 42 | 320 | 1.1e-39 | 165.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31407.t1 | A0A072VB17 | 94.1 | 289 | 9 | 2 | 1 | 289 | 43 | 323 | 1.2e-84 | 322.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31407.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055759 | MS.gene31407 | 0.960855 | 4.95E-119 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene31407 | MS.gene31409 | PPI |
MS.gene028849 | MS.gene31407 | PPI |
MS.gene31407 | MS.gene006667 | PPI |
MS.gene055759 | MS.gene31407 | PPI |
MS.gene31407 | MS.gene043474 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31407.t1 | MTR_2g090900 | 95.848 | 289 | 4 | 2 | 1 | 289 | 43 | 323 | 0.0 | 554 |
MS.gene31407.t1 | MTR_2g090900 | 95.833 | 288 | 4 | 2 | 1 | 288 | 43 | 322 | 0.0 | 553 |
MS.gene31407.t1 | MTR_4g079500 | 64.356 | 303 | 74 | 12 | 2 | 289 | 45 | 328 | 7.21e-111 | 324 |
MS.gene31407.t1 | MTR_8g088650 | 35.361 | 263 | 143 | 8 | 4 | 252 | 75 | 324 | 3.90e-28 | 111 |
MS.gene31407.t1 | MTR_2g078370 | 41.667 | 168 | 81 | 6 | 2 | 163 | 58 | 214 | 4.33e-26 | 102 |
MS.gene31407.t1 | MTR_2g078360 | 64.384 | 73 | 18 | 2 | 211 | 275 | 1 | 73 | 6.05e-24 | 93.2 |
MS.gene31407.t1 | MTR_5g075390 | 48.936 | 94 | 48 | 0 | 156 | 249 | 158 | 251 | 2.25e-20 | 90.1 |
MS.gene31407.t1 | MTR_4g072090 | 48.454 | 97 | 50 | 0 | 155 | 251 | 358 | 454 | 3.67e-20 | 90.5 |
MS.gene31407.t1 | MTR_3g005230 | 51.724 | 87 | 42 | 0 | 166 | 252 | 136 | 222 | 6.84e-20 | 87.0 |
MS.gene31407.t1 | MTR_2g099050 | 44.737 | 114 | 58 | 2 | 155 | 268 | 219 | 327 | 2.02e-19 | 87.8 |
MS.gene31407.t1 | MTR_3g467120 | 46.237 | 93 | 50 | 0 | 157 | 249 | 177 | 269 | 2.15e-18 | 84.7 |
MS.gene31407.t1 | MTR_6g034945 | 46.000 | 100 | 54 | 0 | 155 | 254 | 149 | 248 | 6.50e-18 | 82.4 |
MS.gene31407.t1 | MTR_3g094020 | 45.745 | 94 | 51 | 0 | 156 | 249 | 107 | 200 | 2.74e-17 | 80.9 |
MS.gene31407.t1 | MTR_4g072090 | 47.561 | 82 | 43 | 0 | 155 | 236 | 358 | 439 | 1.92e-15 | 76.3 |
MS.gene31407.t1 | MTR_1g023690 | 48.980 | 98 | 46 | 2 | 156 | 251 | 386 | 481 | 1.92e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31407.t1 | AT3G58120 | 61.589 | 302 | 88 | 9 | 2 | 289 | 42 | 329 | 3.80e-110 | 322 |
MS.gene31407.t1 | AT2G42380 | 58.416 | 303 | 87 | 7 | 2 | 289 | 42 | 320 | 4.46e-103 | 304 |
MS.gene31407.t1 | AT2G42380 | 54.455 | 303 | 88 | 8 | 2 | 289 | 42 | 309 | 1.28e-91 | 274 |
MS.gene31407.t1 | AT3G58120 | 60.241 | 249 | 76 | 6 | 2 | 236 | 42 | 281 | 1.75e-89 | 268 |
MS.gene31407.t1 | AT2G42380 | 58.065 | 248 | 67 | 6 | 2 | 236 | 42 | 265 | 1.66e-81 | 247 |
MS.gene31407.t1 | AT2G42380 | 49.282 | 209 | 69 | 6 | 2 | 197 | 42 | 226 | 1.32e-50 | 167 |
MS.gene31407.t1 | AT2G42380 | 49.282 | 209 | 69 | 6 | 2 | 197 | 42 | 226 | 1.32e-50 | 167 |
MS.gene31407.t1 | AT1G58110 | 32.270 | 282 | 128 | 9 | 4 | 252 | 73 | 324 | 2.82e-25 | 103 |
MS.gene31407.t1 | AT1G58110 | 32.270 | 282 | 128 | 9 | 4 | 252 | 73 | 324 | 2.82e-25 | 103 |
MS.gene31407.t1 | AT1G43700 | 46.491 | 114 | 56 | 1 | 143 | 251 | 175 | 288 | 5.21e-21 | 91.7 |
MS.gene31407.t1 | AT4G38900 | 48.421 | 95 | 49 | 0 | 155 | 249 | 392 | 486 | 4.87e-20 | 90.1 |
MS.gene31407.t1 | AT4G38900 | 48.421 | 95 | 49 | 0 | 155 | 249 | 392 | 486 | 4.87e-20 | 90.1 |
MS.gene31407.t1 | AT2G40620 | 46.316 | 95 | 51 | 0 | 155 | 249 | 146 | 240 | 3.32e-19 | 87.0 |
MS.gene31407.t1 | AT5G04840 | 30.566 | 265 | 136 | 7 | 4 | 264 | 53 | 273 | 7.16e-19 | 85.1 |
MS.gene31407.t1 | AT1G06070 | 46.316 | 95 | 51 | 0 | 155 | 249 | 208 | 302 | 1.00e-18 | 85.9 |
MS.gene31407.t1 | AT1G06850 | 47.872 | 94 | 49 | 0 | 156 | 249 | 147 | 240 | 1.62e-18 | 84.7 |
MS.gene31407.t1 | AT2G21230 | 45.098 | 102 | 56 | 0 | 155 | 256 | 368 | 469 | 3.89e-18 | 84.7 |
MS.gene31407.t1 | AT2G21230 | 45.098 | 102 | 56 | 0 | 155 | 256 | 368 | 469 | 3.89e-18 | 84.7 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.44e-18 | 84.0 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.44e-18 | 84.0 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.44e-18 | 84.0 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.44e-18 | 84.0 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.44e-18 | 84.0 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.44e-18 | 84.0 |
MS.gene31407.t1 | AT2G31370 | 31.174 | 247 | 143 | 5 | 20 | 249 | 57 | 293 | 4.66e-18 | 83.6 |
MS.gene31407.t1 | AT4G38900 | 45.545 | 101 | 49 | 1 | 155 | 249 | 392 | 492 | 8.09e-18 | 83.6 |
MS.gene31407.t1 | AT1G35490 | 28.226 | 248 | 133 | 7 | 4 | 249 | 54 | 258 | 2.39e-17 | 80.9 |
MS.gene31407.t1 | AT1G35490 | 28.226 | 248 | 133 | 7 | 4 | 249 | 54 | 258 | 2.39e-17 | 80.9 |
MS.gene31407.t1 | AT2G21230 | 42.718 | 103 | 53 | 1 | 155 | 251 | 368 | 470 | 1.01e-15 | 77.4 |
MS.gene31407.t1 | AT5G04840 | 30.802 | 237 | 118 | 6 | 4 | 236 | 53 | 247 | 1.71e-15 | 74.7 |
MS.gene31407.t1 | AT2G21230 | 46.341 | 82 | 44 | 0 | 155 | 236 | 368 | 449 | 3.13e-14 | 72.8 |
MS.gene31407.t1 | AT5G07160 | 41.237 | 97 | 57 | 0 | 153 | 249 | 44 | 140 | 2.57e-12 | 63.9 |
MS.gene31407.t1 | AT1G06850 | 68.889 | 45 | 14 | 0 | 156 | 200 | 147 | 191 | 4.85e-11 | 62.0 |
Find 43 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATTAGAATCTTGGCAAAT+AGG | 0.275046 | 2.4:+9560169 | MS.gene31407:intron |
GAGAAGAAGGAAAATGATTT+AGG | 0.296863 | 2.4:+9559602 | MS.gene31407:CDS |
CATTGGCTTTCTACCTCATC+AGG | 0.351950 | 2.4:-9559668 | None:intergenic |
GCGTAGTGTAACTTCATTGC+AGG | 0.377738 | 2.4:+9560245 | MS.gene31407:CDS |
TCTGTTTGAGAATCACATAT+TGG | 0.388915 | 2.4:-9561735 | None:intergenic |
CCATCTTCTTGAGGTTCTGA+TGG | 0.391631 | 2.4:-9561671 | None:intergenic |
GAAGAATAAACAAGAGAAGA+AGG | 0.396694 | 2.4:+9559589 | MS.gene31407:CDS |
ACCAATGCTTGATGATTGTC+GGG | 0.399558 | 2.4:+9559391 | MS.gene31407:CDS |
AAGAAGATGGAAAATGCTAA+TGG | 0.406779 | 2.4:+9561684 | MS.gene31407:CDS |
ATCAGAATCAGAACCCTTCA+TGG | 0.433073 | 2.4:+9559285 | None:intergenic |
GGAGATAGAAAGATTAAGAC+AGG | 0.441141 | 2.4:+9561641 | MS.gene31407:CDS |
GCATTGTTGTTGTTACTTTG+AGG | 0.444336 | 2.4:-9559710 | None:intergenic |
CACCAATGCTTGATGATTGT+CGG | 0.462711 | 2.4:+9559390 | MS.gene31407:CDS |
TTCTGATCTGAAGGACTCGA+AGG | 0.485897 | 2.4:-9559539 | None:intergenic |
GGTAGAAAGCCAATGCAAAC+AGG | 0.488493 | 2.4:+9559676 | MS.gene31407:CDS |
CCATCAGAACCTCAAGAAGA+TGG | 0.490491 | 2.4:+9561671 | MS.gene31407:CDS |
ATGTTTAGTGATGAAATATC+TGG | 0.505923 | 2.4:+9559479 | MS.gene31407:CDS |
TGAAAAGCTTGTCTTGTGCA+AGG | 0.507196 | 2.4:-9560532 | None:intergenic |
TTGACAAAATTCTGATCTGA+AGG | 0.516864 | 2.4:-9559548 | None:intergenic |
CCCCGACAATCATCAAGCAT+TGG | 0.530465 | 2.4:-9559392 | None:intergenic |
TTTAGGAGAGATGAAGAAAG+AGG | 0.538946 | 2.4:+9559619 | MS.gene31407:CDS |
AGGAACTCATCCACCCATGA+AGG | 0.539506 | 2.4:-9559299 | None:intergenic |
GAAAAGCTTGTCTTGTGCAA+GGG | 0.539760 | 2.4:-9560531 | None:intergenic |
TCATCAAGAGGCACTGAAGA+GGG | 0.563124 | 2.4:+9561620 | MS.gene31407:CDS |
CTGATCCAAAGAGAGTCAAA+AGG | 0.572655 | 2.4:+9559756 | MS.gene31407:CDS |
TTCGATGAAGACAACGTTGG+TGG | 0.575587 | 2.4:-9559515 | None:intergenic |
AGATATTTCATCACTAAACA+TGG | 0.586033 | 2.4:-9559477 | None:intergenic |
CTCATCAAGAGGCACTGAAG+AGG | 0.590175 | 2.4:+9561619 | MS.gene31407:CDS |
CAAGGCGAGGTGCTCATCGA+AGG | 0.594155 | 2.4:+9559336 | MS.gene31407:CDS |
TTTACATGCAGCTCATCAAG+AGG | 0.601727 | 2.4:+9561608 | MS.gene31407:intron |
GAATCAGAACCCTTCATGGG+TGG | 0.607660 | 2.4:+9559289 | None:intergenic |
ATTGAAATATGAACCTGATG+AGG | 0.608223 | 2.4:+9559655 | MS.gene31407:CDS |
TCAGAATCAGAACCCTTCAT+GGG | 0.609308 | 2.4:+9559286 | None:intergenic |
TCTGATCTGAAGGACTCGAA+GGG | 0.610267 | 2.4:-9559538 | None:intergenic |
ATGAGCACCTCGCCTTGCCG+AGG | 0.614435 | 2.4:-9559330 | None:intergenic |
GGAACTCATCCACCCATGAA+GGG | 0.626852 | 2.4:-9559298 | None:intergenic |
CAAATAGGCAATCAGCACAA+AGG | 0.647617 | 2.4:+9560184 | MS.gene31407:CDS |
GCGAGGTGCTCATCGAAGGT+CGG | 0.657525 | 2.4:+9559340 | MS.gene31407:CDS |
CAGCACAAAGGTCACGTGTG+AGG | 0.661809 | 2.4:+9560196 | MS.gene31407:CDS |
GCCTTGCCGAGGAAAAGTCG+AGG | 0.688307 | 2.4:-9559319 | None:intergenic |
GATTGTCGGGGTAAACACGA+TGG | 0.708511 | 2.4:+9559404 | MS.gene31407:CDS |
GGGTTCGATGAAGACAACGT+TGG | 0.721008 | 2.4:-9559518 | None:intergenic |
CCAATGCTTGATGATTGTCG+GGG | 0.745183 | 2.4:+9559392 | MS.gene31407:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTATTAATAATAATTAC+TGG | + | chr2.4:9561474-9561493 | MS.gene31407:intron | 10.0% |
!! | AATTAATGAAAAACAATGAT+TGG | - | chr2.4:9561500-9561519 | None:intergenic | 15.0% |
!! | AGATAAAAATTAAAACATGT+AGG | + | chr2.4:9559806-9559825 | MS.gene31407:intron | 15.0% |
!! | ATATTTGAAAAATACTTAGT+TGG | - | chr2.4:9561339-9561358 | None:intergenic | 15.0% |
!! | ATGAAATGACAAAATAAAAA+TGG | + | chr2.4:9560687-9560706 | MS.gene31407:intron | 15.0% |
!! | CTAAATAGTATTAACTATTA+AGG | - | chr2.4:9561532-9561551 | None:intergenic | 15.0% |
!! | TTTAAATCTGATAAGTAAAA+AGG | - | chr2.4:9561396-9561415 | None:intergenic | 15.0% |
!! | AAATTTAATAAGAGTGAAAC+AGG | + | chr2.4:9560784-9560803 | MS.gene31407:intron | 20.0% |
!! | AAGTATTTGTACATTCTATT+TGG | - | chr2.4:9561312-9561331 | None:intergenic | 20.0% |
!! | AATTGAAATATTGTTGATCT+TGG | + | chr2.4:9560053-9560072 | MS.gene31407:intron | 20.0% |
!! | GTTAGTTAAAATAGTTTCTT+AGG | + | chr2.4:9561039-9561058 | MS.gene31407:intron | 20.0% |
!! | TATATTAACTACTTTGTGAT+GGG | - | chr2.4:9560900-9560919 | None:intergenic | 20.0% |
! | ACTAAAAAATTGTGTCATGT+GGG | - | chr2.4:9559947-9559966 | None:intergenic | 25.0% |
! | AGATATTTCATCACTAAACA+TGG | - | chr2.4:9559480-9559499 | None:intergenic | 25.0% |
! | ATATATATTTGGACAGTAGA+AGG | - | chr2.4:9560409-9560428 | None:intergenic | 25.0% |
! | ATATTAACTACTTTGTGATG+GGG | - | chr2.4:9560899-9560918 | None:intergenic | 25.0% |
! | ATGTTTAGTGATGAAATATC+TGG | + | chr2.4:9559479-9559498 | MS.gene31407:CDS | 25.0% |
! | ATTTGCAGTACTATAATATC+TGG | + | chr2.4:9560315-9560334 | MS.gene31407:intron | 25.0% |
! | GTATATTAACTACTTTGTGA+TGG | - | chr2.4:9560901-9560920 | None:intergenic | 25.0% |
! | TACTAAAAAATTGTGTCATG+TGG | - | chr2.4:9559948-9559967 | None:intergenic | 25.0% |
!!! | CTCTTGAAATTTTGATACAT+AGG | - | chr2.4:9561001-9561020 | None:intergenic | 25.0% |
!!! | GTTTTTTTGCATTAGAATCT+TGG | + | chr2.4:9560161-9560180 | MS.gene31407:intron | 25.0% |
AAGAAGATGGAAAATGCTAA+TGG | + | chr2.4:9561684-9561703 | MS.gene31407:CDS | 30.0% | |
ACTATTTAGACACATAGCTA+GGG | + | chr2.4:9561543-9561562 | MS.gene31407:intron | 30.0% | |
ACTGTCCAAATATATATCGA+AGG | + | chr2.4:9560412-9560431 | MS.gene31407:intron | 30.0% | |
ATTATTGTGCTTACTCGTTA+GGG | + | chr2.4:9561161-9561180 | MS.gene31407:intron | 30.0% | |
ATTGAAATATGAACCTGATG+AGG | + | chr2.4:9559655-9559674 | MS.gene31407:CDS | 30.0% | |
CAGTGCTATATATAGCTTAT+TGG | - | chr2.4:9560723-9560742 | None:intergenic | 30.0% | |
GAAGAATAAACAAGAGAAGA+AGG | + | chr2.4:9559589-9559608 | MS.gene31407:CDS | 30.0% | |
GAGAAGAAGGAAAATGATTT+AGG | + | chr2.4:9559602-9559621 | MS.gene31407:CDS | 30.0% | |
TACTATTTAGACACATAGCT+AGG | + | chr2.4:9561542-9561561 | MS.gene31407:intron | 30.0% | |
TATTAACTACTTTGTGATGG+GGG | - | chr2.4:9560898-9560917 | None:intergenic | 30.0% | |
TCTGTTTGAGAATCACATAT+TGG | - | chr2.4:9561738-9561757 | None:intergenic | 30.0% | |
TTCAGCCTTCGATATATATT+TGG | - | chr2.4:9560420-9560439 | None:intergenic | 30.0% | |
TTGACAAAATTCTGATCTGA+AGG | - | chr2.4:9559551-9559570 | None:intergenic | 30.0% | |
!! | AATTACCTTTTGACTCTCTT+TGG | - | chr2.4:9559764-9559783 | None:intergenic | 30.0% |
AAAAGGAGCTAACTACTTTG+AGG | - | chr2.4:9561379-9561398 | None:intergenic | 35.0% | |
AGTCTACTAACATTTGAGCT+CGG | + | chr2.4:9560927-9560946 | MS.gene31407:intron | 35.0% | |
GAATCAGTTGCAAAACTCAA+AGG | - | chr2.4:9560139-9560158 | None:intergenic | 35.0% | |
GATTATTGTGCTTACTCGTT+AGG | + | chr2.4:9561160-9561179 | MS.gene31407:intron | 35.0% | |
GCATTAGAATCTTGGCAAAT+AGG | + | chr2.4:9560169-9560188 | MS.gene31407:intron | 35.0% | |
GGAGATAGAAAGATTAAGAC+AGG | + | chr2.4:9561641-9561660 | MS.gene31407:CDS | 35.0% | |
GTTGGTCAAGTATTCACTAT+TGG | + | chr2.4:9560755-9560774 | MS.gene31407:intron | 35.0% | |
TATGTTTGTGTGCGTTCAAA+TGG | - | chr2.4:9561204-9561223 | None:intergenic | 35.0% | |
TGATCCAAAAATGCAACTCT+TGG | - | chr2.4:9560458-9560477 | None:intergenic | 35.0% | |
TTTAGGAGAGATGAAGAAAG+AGG | + | chr2.4:9559619-9559638 | MS.gene31407:CDS | 35.0% | |
! | ATCTCCAAGAGTTGCATTTT+TGG | + | chr2.4:9560451-9560470 | MS.gene31407:CDS | 35.0% |
! | CAAGACAAGCTTTTCAAAGA+TGG | + | chr2.4:9560539-9560558 | MS.gene31407:CDS | 35.0% |
! | GTGAATTTTCCTGTTTGCAT+TGG | - | chr2.4:9559688-9559707 | None:intergenic | 35.0% |
! | TAGCATTTTCCATCTTCTTG+AGG | - | chr2.4:9561683-9561702 | None:intergenic | 35.0% |
!! | ATTTCATGCTTGACTTGTCA+TGG | - | chr2.4:9560674-9560693 | None:intergenic | 35.0% |
!! | GCATTGTTGTTGTTACTTTG+AGG | - | chr2.4:9559713-9559732 | None:intergenic | 35.0% |
!! | TTGAGTTTTGCAACTGATTC+TGG | + | chr2.4:9560139-9560158 | MS.gene31407:intron | 35.0% |
!!! | ACATATTGGCTTTTGTGATG+GGG | - | chr2.4:9561724-9561743 | None:intergenic | 35.0% |
!!! | CACATATTGGCTTTTGTGAT+GGG | - | chr2.4:9561725-9561744 | None:intergenic | 35.0% |
!!! | TCACATATTGGCTTTTGTGA+TGG | - | chr2.4:9561726-9561745 | None:intergenic | 35.0% |
CAAATAGGCAATCAGCACAA+AGG | + | chr2.4:9560184-9560203 | MS.gene31407:CDS | 40.0% | |
CTGATCCAAAGAGAGTCAAA+AGG | + | chr2.4:9559756-9559775 | MS.gene31407:CDS | 40.0% | |
GAAAAGCTTGTCTTGTGCAA+GGG | - | chr2.4:9560534-9560553 | None:intergenic | 40.0% | |
GCACTGTAGTTACTTGAAGT+TGG | + | chr2.4:9560737-9560756 | MS.gene31407:intron | 40.0% | |
GGGCACATGATCACATAAAT+AGG | - | chr2.4:9560878-9560897 | None:intergenic | 40.0% | |
GTCTACTAACATTTGAGCTC+GGG | + | chr2.4:9560928-9560947 | MS.gene31407:intron | 40.0% | |
GTGAAAGAATATGTACCCTG+TGG | + | chr2.4:9560637-9560656 | MS.gene31407:intron | 40.0% | |
TGAAAAGCTTGTCTTGTGCA+AGG | - | chr2.4:9560535-9560554 | None:intergenic | 40.0% | |
TGTGTGCAGTCTCATAACTA+TGG | - | chr2.4:9560811-9560830 | None:intergenic | 40.0% | |
TTTACATGCAGCTCATCAAG+AGG | + | chr2.4:9561608-9561627 | MS.gene31407:intron | 40.0% | |
! | ACCAATGCTTGATGATTGTC+GGG | + | chr2.4:9559391-9559410 | MS.gene31407:CDS | 40.0% |
! | CACCAATGCTTGATGATTGT+CGG | + | chr2.4:9559390-9559409 | MS.gene31407:CDS | 40.0% |
! | TGACTTGTCATGGTCTCATT+AGG | - | chr2.4:9560664-9560683 | None:intergenic | 40.0% |
!! | TTTTGTGATGGGGATGGTAA+GGG | - | chr2.4:9561714-9561733 | None:intergenic | 40.0% |
ATGGTCTCATTAGGACCACA+GGG | - | chr2.4:9560655-9560674 | None:intergenic | 45.0% | |
CCATCAGAACCTCAAGAAGA+TGG | + | chr2.4:9561671-9561690 | MS.gene31407:CDS | 45.0% | |
GCGTAGTGTAACTTCATTGC+AGG | + | chr2.4:9560245-9560264 | MS.gene31407:CDS | 45.0% | |
GGTAGAAAGCCAATGCAAAC+AGG | + | chr2.4:9559676-9559695 | MS.gene31407:CDS | 45.0% | |
TCTGATCTGAAGGACTCGAA+GGG | - | chr2.4:9559541-9559560 | None:intergenic | 45.0% | |
TTCGATGAAGACAACGTTGG+TGG | - | chr2.4:9559518-9559537 | None:intergenic | 45.0% | |
TTCTGATCTGAAGGACTCGA+AGG | - | chr2.4:9559542-9559561 | None:intergenic | 45.0% | |
! | CCAATGCTTGATGATTGTCG+GGG | + | chr2.4:9559392-9559411 | MS.gene31407:CDS | 45.0% |
! | CCATCTTCTTGAGGTTCTGA+TGG | - | chr2.4:9561674-9561693 | None:intergenic | 45.0% |
! | TGAGTTCCTCGACTTTTCCT+CGG | + | chr2.4:9559313-9559332 | MS.gene31407:CDS | 45.0% |
!! | CATTGGCTTTCTACCTCATC+AGG | - | chr2.4:9559671-9559690 | None:intergenic | 45.0% |
!! | CTTTTGTGATGGGGATGGTA+AGG | - | chr2.4:9561715-9561734 | None:intergenic | 45.0% |
!! | TCATCAAGAGGCACTGAAGA+GGG | + | chr2.4:9561620-9561639 | MS.gene31407:CDS | 45.0% |
!!! | ATTGGCTTTTGTGATGGGGA+TGG | - | chr2.4:9561720-9561739 | None:intergenic | 45.0% |
AGGAACTCATCCACCCATGA+AGG | - | chr2.4:9559302-9559321 | None:intergenic | 50.0% | |
CATGGTCTCATTAGGACCAC+AGG | - | chr2.4:9560656-9560675 | None:intergenic | 50.0% | |
CCCCGACAATCATCAAGCAT+TGG | - | chr2.4:9559395-9559414 | None:intergenic | 50.0% | |
GATTGTCGGGGTAAACACGA+TGG | + | chr2.4:9559404-9559423 | MS.gene31407:CDS | 50.0% | |
GGAACTCATCCACCCATGAA+GGG | - | chr2.4:9559301-9559320 | None:intergenic | 50.0% | |
GGGTTCGATGAAGACAACGT+TGG | - | chr2.4:9559521-9559540 | None:intergenic | 50.0% | |
!! | CTCATCAAGAGGCACTGAAG+AGG | + | chr2.4:9561619-9561638 | MS.gene31407:CDS | 50.0% |
!! | GGAGCTAACTACTTTGAGGC+AGG | - | chr2.4:9561375-9561394 | None:intergenic | 50.0% |
CAGCACAAAGGTCACGTGTG+AGG | + | chr2.4:9560196-9560215 | MS.gene31407:CDS | 55.0% | |
! | TCCTCGACTTTTCCTCGGCA+AGG | + | chr2.4:9559318-9559337 | MS.gene31407:CDS | 55.0% |
GCCTTGCCGAGGAAAAGTCG+AGG | - | chr2.4:9559322-9559341 | None:intergenic | 60.0% | |
! | CAAGGCGAGGTGCTCATCGA+AGG | + | chr2.4:9559336-9559355 | MS.gene31407:CDS | 60.0% |
! | GACTTTTCCTCGGCAAGGCG+AGG | + | chr2.4:9559323-9559342 | MS.gene31407:CDS | 60.0% |
! | GCGAGGTGCTCATCGAAGGT+CGG | + | chr2.4:9559340-9559359 | MS.gene31407:CDS | 60.0% |
ATGAGCACCTCGCCTTGCCG+AGG | - | chr2.4:9559333-9559352 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 9559290 | 9561782 | 9559290 | ID=MS.gene31407 |
chr2.4 | mRNA | 9559290 | 9561782 | 9559290 | ID=MS.gene31407.t1;Parent=MS.gene31407 |
chr2.4 | exon | 9559290 | 9559777 | 9559290 | ID=MS.gene31407.t1.exon1;Parent=MS.gene31407.t1 |
chr2.4 | CDS | 9559290 | 9559777 | 9559290 | ID=cds.MS.gene31407.t1;Parent=MS.gene31407.t1 |
chr2.4 | exon | 9560176 | 9560266 | 9560176 | ID=MS.gene31407.t1.exon2;Parent=MS.gene31407.t1 |
chr2.4 | CDS | 9560176 | 9560266 | 9560176 | ID=cds.MS.gene31407.t1;Parent=MS.gene31407.t1 |
chr2.4 | exon | 9560434 | 9560560 | 9560434 | ID=MS.gene31407.t1.exon3;Parent=MS.gene31407.t1 |
chr2.4 | CDS | 9560434 | 9560560 | 9560434 | ID=cds.MS.gene31407.t1;Parent=MS.gene31407.t1 |
chr2.4 | exon | 9561619 | 9561782 | 9561619 | ID=MS.gene31407.t1.exon4;Parent=MS.gene31407.t1 |
chr2.4 | CDS | 9561619 | 9561782 | 9561619 | ID=cds.MS.gene31407.t1;Parent=MS.gene31407.t1 |
Gene Sequence |
Protein sequence |