AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00790.t1 MTR_2g023880 98.958 192 2 0 1 192 31 222 1.90e-136 380
MS.gene00790.t1 MTR_4g049540 60.733 191 74 1 1 191 31 220 3.76e-82 243
MS.gene00790.t1 MTR_2g088060 49.738 191 95 1 1 191 31 220 9.17e-55 173
MS.gene00790.t1 MTR_7g056133 43.094 181 95 2 2 175 33 212 6.66e-41 138
MS.gene00790.t1 MTR_5g093360 55.882 68 29 1 2 69 32 98 4.05e-22 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00790.t1 AT5G42570 62.011 179 67 1 1 179 31 208 1.21e-77 231
MS.gene00790.t1 AT1G11905 60.000 180 71 1 1 180 31 209 1.52e-72 219
MS.gene00790.t1 AT1G11905 55.556 180 78 2 1 180 31 208 9.55e-61 189
MS.gene00790.t1 AT5G48660 39.560 182 102 2 2 176 33 213 1.56e-34 122
MS.gene00790.t1 AT3G07190 39.011 182 103 2 2 176 33 213 4.93e-33 118
MS.gene00790.t1 AT3G20450 52.475 101 47 1 3 102 37 137 2.57e-28 103
MS.gene00790.t1 AT5G48660 37.226 137 79 1 47 176 1 137 9.83e-20 81.6

Find 43 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2.3:+64685843 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2.3:-64688210 MS.gene00790:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2.3:+64685899 None:intergenic
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2.3:+64686202 None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2.3:-64686105 MS.gene00790:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2.3:-64688366 None:intergenic
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2.3:+64686151 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2.3:-64685972 MS.gene00790:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2.3:-64688219 MS.gene00790:CDS
ACAGACTGCATCATTACATA+AGG 0.453424 2.3:-64686179 MS.gene00790:CDS
ACATAAGGGAACTCCGGATT+CGG 0.458900 2.3:-64686164 MS.gene00790:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2.3:-64688333 MS.gene00790:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2.3:+64685884 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2.3:-64686037 MS.gene00790:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2.3:+64685890 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2.3:-64688317 MS.gene00790:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2.3:-64686079 MS.gene00790:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2.3:-64688344 MS.gene00790:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2.3:-64686007 MS.gene00790:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2.3:-64685926 MS.gene00790:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2.3:-64688361 None:intergenic
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2.3:-64686127 MS.gene00790:CDS
TCTTCTTGAAGCTACACTCA+TGG 0.550488 2.3:-64688180 MS.gene00790:CDS
CAGACTGCATCATTACATAA+GGG 0.555282 2.3:-64686178 MS.gene00790:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.557141 2.3:-64688179 MS.gene00790:intron
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2.3:+64685893 None:intergenic
CAACAACGTGGGATCGAACA+TGG 0.569692 2.3:-64688245 MS.gene00790:CDS
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2.3:-64685958 MS.gene00790:CDS
ATCATTACATAAGGGAACTC+CGG 0.575747 2.3:-64686170 MS.gene00790:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2.3:+64688209 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2.3:-64685957 MS.gene00790:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2.3:-64686003 MS.gene00790:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2.3:-64686151 MS.gene00790:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2.3:-64688350 MS.gene00790:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2.3:+64685969 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2.3:+64688205 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2.3:+64688304 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2.3:-64686125 MS.gene00790:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2.3:-64688256 MS.gene00790:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2.3:-64686126 MS.gene00790:CDS
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2.3:-64686128 MS.gene00790:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2.3:-64686124 MS.gene00790:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2.3:-64688257 MS.gene00790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG + chr2.3:64686961-64686980 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG + chr2.3:64686962-64686981 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG + chr2.3:64687920-64687939 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG - chr2.3:64687042-64687061 MS.gene00790:intron 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG - chr2.3:64686127-64686146 MS.gene00790:CDS 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG - chr2.3:64686910-64686929 MS.gene00790:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG - chr2.3:64686226-64686245 MS.gene00790:intron 15.0%
!! AATCATAAGATATATGCATA+TGG + chr2.3:64687280-64687299 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG - chr2.3:64687614-64687633 MS.gene00790:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG + chr2.3:64687508-64687527 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG - chr2.3:64686133-64686152 MS.gene00790:CDS 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG - chr2.3:64687017-64687036 MS.gene00790:intron 20.0%
!!! ATGGGTATGTTTTTTTTAAA+TGG - chr2.3:64686041-64686060 MS.gene00790:CDS 20.0%
!!! ATTTTGCTTATAATTAAGAC+TGG - chr2.3:64686270-64686289 MS.gene00790:intron 20.0%
!!! CTATATGATTTGCAATTTTT+AGG - chr2.3:64687669-64687688 MS.gene00790:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG + chr2.3:64686890-64686909 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG - chr2.3:64687806-64687825 MS.gene00790:intron 20.0%
!!! TGGGTATGTTTTTTTTAAAT+GGG - chr2.3:64686042-64686061 MS.gene00790:CDS 20.0%
! AAGTTTAACAACATACTAGA+TGG + chr2.3:64687718-64687737 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG + chr2.3:64686543-64686562 None:intergenic 25.0%
! AGATTGACTACATTAATGAA+AGG + chr2.3:64686549-64686568 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG + chr2.3:64686542-64686561 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG - chr2.3:64687932-64687951 MS.gene00790:intron 25.0%
! TTCAGATGAAACTAAAACAA+TGG - chr2.3:64688123-64688142 MS.gene00790:intron 25.0%
! TTTGGAAATATGTTGAACTT+AGG + chr2.3:64687765-64687784 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG + chr2.3:64687226-64687245 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG - chr2.3:64686102-64686121 MS.gene00790:CDS 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG + chr2.3:64687783-64687802 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG - chr2.3:64686988-64687007 MS.gene00790:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG - chr2.3:64688074-64688093 MS.gene00790:intron 30.0%
AAGTTGAAAAATGTGAGCTT+TGG - chr2.3:64687568-64687587 MS.gene00790:intron 30.0%
ACAATGATTCAGCATTCATA+AGG - chr2.3:64687237-64687256 MS.gene00790:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG - chr2.3:64688195-64688214 MS.gene00790:CDS 30.0%
AGATCTTCTCAATTTCCAAA+AGG + chr2.3:64686475-64686494 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG - chr2.3:64687971-64687990 MS.gene00790:intron 30.0%
CAGTATTGTTTATGTTGGAT+TGG + chr2.3:64687875-64687894 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG + chr2.3:64688003-64688022 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG + chr2.3:64687880-64687899 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG + chr2.3:64687458-64687477 None:intergenic 30.0%
GTTTATTGATGAGTTATTGG+TGG - chr2.3:64687617-64687636 MS.gene00790:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG - chr2.3:64686274-64686293 MS.gene00790:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG - chr2.3:64687449-64687468 MS.gene00790:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG - chr2.3:64687836-64687855 MS.gene00790:intron 30.0%
TTGTTTGCCTAATTCTTTGT+TGG - chr2.3:64687448-64687467 MS.gene00790:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG - chr2.3:64687517-64687536 MS.gene00790:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG - chr2.3:64686457-64686476 MS.gene00790:intron 30.0%
!! ACATTTGTAAGAGTGTTGTA+CGG - chr2.3:64686391-64686410 MS.gene00790:intron 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG + chr2.3:64687828-64687847 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG + chr2.3:64687217-64687236 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG - chr2.3:64687498-64687517 MS.gene00790:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG + chr2.3:64686683-64686702 None:intergenic 35.0%
ACAGACTGCATCATTACATA+AGG - chr2.3:64688023-64688042 MS.gene00790:intron 35.0%
ACTCCGAAAGATCAGAAAAT+GGG + chr2.3:64686513-64686532 None:intergenic 35.0%
AGCTGTTAAGAAACAAATGC+GGG - chr2.3:64688075-64688094 MS.gene00790:intron 35.0%
ATCATTACATAAGGGAACTC+CGG - chr2.3:64688032-64688051 MS.gene00790:intron 35.0%
ATGATGAAGATTCAACAACG+TGG - chr2.3:64685945-64685964 MS.gene00790:CDS 35.0%
CAGACTGCATCATTACATAA+GGG - chr2.3:64688024-64688043 MS.gene00790:intron 35.0%
CAGTCAAAAGATAAAGAGGT+AGG - chr2.3:64688199-64688218 MS.gene00790:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG + chr2.3:64687103-64687122 None:intergenic 35.0%
GAGAATGTTCTACTTTCTTG+TGG - chr2.3:64687590-64687609 MS.gene00790:intron 35.0%
TGAATATGATCGCTTACTTG+AGG - chr2.3:64688276-64688295 MS.gene00790:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG - chr2.3:64685946-64685965 MS.gene00790:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG - chr2.3:64687244-64687263 MS.gene00790:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG - chr2.3:64687956-64687975 MS.gene00790:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG - chr2.3:64688245-64688264 MS.gene00790:CDS 35.0%
! GAACCCATTTTCTGATCTTT+CGG - chr2.3:64686507-64686526 MS.gene00790:intron 35.0%
! GTCATATCTAGTTTCCGTAT+CGG + chr2.3:64686321-64686340 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG - chr2.3:64687350-64687369 MS.gene00790:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG - chr2.3:64687349-64687368 MS.gene00790:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG + chr2.3:64685901-64685920 None:intergenic 40.0%
AATACACGTTCACGAGGTAT+AGG + chr2.3:64687189-64687208 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG + chr2.3:64687364-64687383 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG + chr2.3:64687442-64687461 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG + chr2.3:64687367-64687386 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG - chr2.3:64688077-64688096 MS.gene00790:intron 40.0%
CTTAGCCATAAGAACCTGAT+CGG + chr2.3:64686000-64686019 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG - chr2.3:64686023-64686042 MS.gene00790:CDS 40.0%
GACTCCGAAAGATCAGAAAA+TGG + chr2.3:64686514-64686533 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG + chr2.3:64687342-64687361 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG - chr2.3:64688076-64688095 MS.gene00790:intron 40.0%
GTTGTACGGATGTAATACAC+CGG - chr2.3:64686405-64686424 MS.gene00790:intron 40.0%
TCTTCTTGAAGCTACACTCA+TGG - chr2.3:64686022-64686041 MS.gene00790:CDS 40.0%
TGTTAAGAAACAAATGCGGG+GGG - chr2.3:64688078-64688097 MS.gene00790:intron 40.0%
TTCTGTCAACAGATTGTAGC+TGG + chr2.3:64688321-64688340 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG - chr2.3:64685983-64686002 MS.gene00790:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG - chr2.3:64687628-64687647 MS.gene00790:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG + chr2.3:64688236-64688255 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG - chr2.3:64688244-64688263 MS.gene00790:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG - chr2.3:64688230-64688249 MS.gene00790:CDS 45.0%
ACATAAGGGAACTCCGGATT+CGG - chr2.3:64688038-64688057 MS.gene00790:intron 45.0%
AGAGGCTTTACCCTGTCAAA+CGG - chr2.3:64686738-64686757 MS.gene00790:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG + chr2.3:64688315-64688334 None:intergenic 45.0%
CGGAGCATAGCAGAAAAATC+AGG - chr2.3:64686809-64686828 MS.gene00790:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG - chr2.3:64686768-64686787 MS.gene00790:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG + chr2.3:64687098-64687117 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG - chr2.3:64685885-64685904 MS.gene00790:CDS 45.0%
GTTCGAAATACACGTTCACG+AGG + chr2.3:64687195-64687214 None:intergenic 45.0%
TCCTACCGATCAGGTTCTTA+TGG - chr2.3:64685992-64686011 MS.gene00790:CDS 45.0%
TCTAGAAGCTGAACCTAGAC+AGG + chr2.3:64687130-64687149 None:intergenic 45.0%
TCTTGAGTTTACTGTGCCTC+TGG - chr2.3:64686699-64686718 MS.gene00790:intron 45.0%
TGTAATACACCGGTGTGTGT+TGG - chr2.3:64686415-64686434 MS.gene00790:intron 45.0%
TTTGACAGGGTAAAGCCTCT+CGG + chr2.3:64686738-64686757 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG - chr2.3:64687627-64687646 MS.gene00790:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG + chr2.3:64685885-64685904 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG + chr2.3:64686315-64686334 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG + chr2.3:64686767-64686786 None:intergenic 45.0%
AAATACGGTGTGGCGCATAG+CGG + chr2.3:64687088-64687107 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG - chr2.3:64687425-64687444 MS.gene00790:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG - chr2.3:64686863-64686882 MS.gene00790:intron 50.0%
AGAGAAAGAGCCTTCACCCT+TGG - chr2.3:64687311-64687330 MS.gene00790:intron 50.0%
ATAATGCTCGCAAGCCACAG+AGG + chr2.3:64687949-64687968 None:intergenic 50.0%
CAACAACGTGGGATCGAACA+TGG - chr2.3:64685957-64685976 MS.gene00790:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG + chr2.3:64688054-64688073 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG - chr2.3:64686855-64686874 MS.gene00790:intron 50.0%
GAGAAAGAGCCTTCACCCTT+GGG - chr2.3:64687312-64687331 MS.gene00790:intron 50.0%
GAGGCTTTACCCTGTCAAAC+GGG - chr2.3:64686739-64686758 MS.gene00790:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG + chr2.3:64685996-64686015 None:intergenic 50.0%
GGCTGCCTTCAATTCTCGAA+TGG - chr2.3:64686675-64686694 MS.gene00790:intron 50.0%
TCTGCTATGCTCCGCTATAG+CGG + chr2.3:64686803-64686822 None:intergenic 50.0%
TGACAACAGAGCTCCTGTCT+AGG - chr2.3:64687114-64687133 MS.gene00790:intron 50.0%
TGACACTGACACAGACACGT+TGG - chr2.3:64686337-64686356 MS.gene00790:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG - chr2.3:64686654-64686673 MS.gene00790:intron 50.0%
TTGGGTAAACCGGTCACTCT+TGG - chr2.3:64687330-64687349 MS.gene00790:intron 50.0%
! AAGAGTGACCGGTTTACCCA+AGG + chr2.3:64687331-64687350 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG - chr2.3:64686293-64686312 MS.gene00790:intron 50.0%
! AGAGTGACCGGTTTACCCAA+GGG + chr2.3:64687330-64687349 None:intergenic 50.0%
! CGCTTTTGACAACAGAGGAC+AGG + chr2.3:64686770-64686789 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG - chr2.3:64688165-64688184 MS.gene00790:intron 50.0%
! GCTTTGGATCGGTTGAAACG+AGG - chr2.3:64685852-64685871 MS.gene00790:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG - chr2.3:64686823-64686842 MS.gene00790:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG + chr2.3:64687087-64687106 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG - chr2.3:64685869-64685888 MS.gene00790:CDS 55.0%
AGGGTAAAGCCTCTCGGACT+GGG + chr2.3:64686732-64686751 None:intergenic 55.0%
CAGATTGTAGCTGGTTGCGG+AGG + chr2.3:64688312-64688331 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG - chr2.3:64688051-64688070 MS.gene00790:intron 55.0%
CGTTCACGAGGTATAGGCAC+TGG + chr2.3:64687183-64687202 None:intergenic 55.0%
GATCGGTTGAAACGAGGTCG+TGG - chr2.3:64685858-64685877 MS.gene00790:CDS 55.0%
GCCTTCACCCTTGGGTAAAC+CGG - chr2.3:64687320-64687339 MS.gene00790:intron 55.0%
TCTCCGTGACCAACACACAC+CGG + chr2.3:64686427-64686446 None:intergenic 55.0%
! ACACCGGTGTGTGTTGGTCA+CGG - chr2.3:64686421-64686440 MS.gene00790:intron 55.0%
! ACCGGTTTACCCAAGGGTGA+AGG + chr2.3:64687324-64687343 None:intergenic 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG + chr2.3:64688306-64688325 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG + chr2.3:64687165-64687184 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG + chr2.3:64687166-64687185 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG + chr2.3:64687177-64687196 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG - chr2.3:64686304-64686323 MS.gene00790:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG + chr2.3:64686752-64686771 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG - chr2.3:64687149-64687168 MS.gene00790:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG + chr2.3:64686849-64686868 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG + chr2.3:64686751-64686770 None:intergenic 60.0%
CAGGGTAAAGCCTCTCGGAC+TGG + chr2.3:64686733-64686752 None:intergenic 60.0%
CTATGCTCCGCTATAGCGGC+CGG + chr2.3:64686799-64686818 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG - chr2.3:64688084-64688103 MS.gene00790:intron 60.0%
GGGTAAAGCCTCTCGGACTG+GGG + chr2.3:64686731-64686750 None:intergenic 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG - chr2.3:64686777-64686796 MS.gene00790:intron 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG + chr2.3:64687073-64687092 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG + chr2.3:64687167-64687186 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG + chr2.3:64687076-64687095 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG + chr2.3:64686775-64686794 None:intergenic 60.0%
GCCAACAGGGGAGCTGAGAG+AGG + chr2.3:64687153-64687172 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG - chr2.3:64686720-64686739 MS.gene00790:intron 65.0%
GGGGCTGAGGATGCGAAAGC+TGG - chr2.3:64688097-64688116 MS.gene00790:intron 65.0%
! CGGACTGGGGAAAGAGCCAG+AGG + chr2.3:64686718-64686737 None:intergenic 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG - chr2.3:64686848-64686867 MS.gene00790:intron 65.0%
CTCCGCTATAGCGGCCGGTG+CGG + chr2.3:64686794-64686813 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG - chr2.3:64686832-64686851 MS.gene00790:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG + chr2.3:64686844-64686863 None:intergenic 75.0%
! GGCCGCACCGGCCGCTATAG+CGG - chr2.3:64686789-64686808 MS.gene00790:intron 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG - chr2.3:64686835-64686854 MS.gene00790:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG + chr2.3:64686836-64686855 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG - chr2.3:64686836-64686855 MS.gene00790:intron 85.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 64685849 64688375 64685849 ID=MS.gene00790
chr2.3 mRNA 64685849 64688375 64685849 ID=MS.gene00790.t1;Parent=MS.gene00790
chr2.3 exon 64688180 64688375 64688180 ID=MS.gene00790.t1.exon1;Parent=MS.gene00790.t1
chr2.3 CDS 64688180 64688375 64688180 ID=cds.MS.gene00790.t1;Parent=MS.gene00790.t1
chr2.3 exon 64685849 64686231 64685849 ID=MS.gene00790.t1.exon2;Parent=MS.gene00790.t1
chr2.3 CDS 64685849 64686231 64685849 ID=cds.MS.gene00790.t1;Parent=MS.gene00790.t1
Gene Sequence

>MS.gene00790

ATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAACATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTATGTTTTTTTTAAATGGGTTGTTGAAAAGTTTTGATTTTTGTTTATTTGCTTGATGAATGAATGAATTTTGTATGAGGAATTGAATTTGATTTATGTTTATGGATTTGGATTTAATGTGATTGCTCTGTTATGTGTAATTGTTTGCATTATTAATTTATTGAGTTTTTAGCATTATTATTTTTGTAAATATGATCAAATAGGTACATTTTTGTAATGTGTATAATTTTGCTTATAATTAAGACTGGACGGAGTATCTGTCAAGCACCGGATCCGATACGGAAACTAGATATGACACTGACACAGACACGTTGGAACAAAGAACGTTTTGTATGAGTTGTGAGATACATTTGTAAGAGTGTTGTACGGATGTAATACACCGGTGTGTGTTGGTCACGGAGATATGAATATATGATCAATCACAAAACCTTTTGGAAATTGAGAAGATCTTCTCGAATTCATGAACCCATTTTCTGATCTTTCGGAGTCATGTTCCCTTTTCCTTTCATTAATGTAGTCAATCTTGCATTGTGATGAATATGTTGTCTCTGTTGTTGCTGATGCAATTGATGAGTGATGATCTCTAGTGATCTAAAAGATTTGTTTGTTTTGCTGCATCTGATGCAGCATGGCTGCCTTCAATTCTCGAATGGTTCTTGAGTTTACTGTGCCTCTGGCTCTTTCCCCAGTCCGAGAGGCTTTACCCTGTCAAACGGGCTCCTCCTGTCCTCTGTTGTCAAAAGCGGCCGCACCGGCCGCTATAGCGGAGCATAGCAGAAAAATCAGGACCACTGCGCCAGGCCGCGTCGGCGGGTATCAGAAGTGGAAAGCGGCAAAGCGGACCTATCAATAGTAAAACAATAACTTTTACTAGTTGTATATAATTGGTATTAGCGATTTTCAATTTTGCTATCCCTTTTATTTCATATTATGAATACTTCATGAAGTTTTGAGTAATGTTTAAGGTATTTTAGTATTTCTTTTGAATAGTATGGTATATAGTATTAAACTTATTAGTGGCTGCACCACCGAAATAGCGCCCGCTATGCGCCACACCGTATTTCTGCATTGACAACAGAGCTCCTGTCTAGGTTCAGCTTCTAGACCTCTCTCAGCTCCCCTGTTGGCACCTCTTCCAGTGCCTATACCTCGTGAACGTGTATTTCGAACCGTGTTTTCCTGAAAAAGAATCACAATGATTCAGCATTCATAAGGCATAAGGATCATATAAACCATATGCATATATCTTATGATTGATTTAGTTAAAGAGAAAGAGCCTTCACCCTTGGGTAAACCGGTCACTCTTGGTATTTTAGCCTCCTAATGGGCTCATATGATTCAGACGCTCAACACTCATATAACTGAAGCTTCTAACTTGTAACTTGTGAGTGAAGCCTCGTTGGTTGTTTGCCTAATTCTTTGTTGGGTTATTCTGTAAATATTTGTGTTTCTTTTTGCTACCGATTTTTTCAATGGTTTAGAATGAATGTTGAGGCAACTTACATGAGATATGTGATCTTCTAAAGTTGAAAAATGTGAGCTTTGGAGAATGTTCTACTTTCTTGTGGTATTGTTTATTGATGAGTTATTGGTGGCATTAGCAGGGAGATTGAAATCAGATGTACTATATGATTTGCAATTTTTAGGATTCTCTCTCTCACAACTAGAAGCCATCTAGTATGTTGTTAAACTTTACAACTCAGATTGTATGTAATTTCCTAAGTTCAACATATTTCCAAATTTTTCAAAACATTGCTGTGTTCTTTGATTTTTAATAAGACCGGTCACATCTTAAAACAACATAGCTGAAGAGGTAAAGTTACAATTCCAATCCAACATAAACAATACTGTTGAGTTTCTGAACTGATTGTTCCTTAATATTTAGACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MS.gene00790.t1

MALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEHGASVNPTDQVLMAKHLLEATLMGAILFLALMIDRLHHYIRELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM