AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00792.t1 MTR_2g023880 91.038 212 12 2 1 209 15 222 2.42e-133 373
MS.gene00792.t1 MTR_4g049540 56.398 211 84 3 1 208 15 220 1.53e-77 232
MS.gene00792.t1 MTR_2g088060 46.445 211 105 3 1 208 15 220 9.11e-50 161
MS.gene00792.t1 MTR_7g056133 41.270 189 104 2 10 192 25 212 1.37e-35 125
MS.gene00792.t1 MTR_5g093360 54.321 81 36 1 2 82 16 95 5.78e-26 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00792.t1 AT5G42570 57.789 199 76 3 1 196 15 208 5.02e-75 226
MS.gene00792.t1 AT1G11905 54.500 200 83 3 1 197 15 209 1.29e-66 204
MS.gene00792.t1 AT1G11905 52.792 197 90 2 1 197 15 208 6.29e-63 195
MS.gene00792.t1 AT3G07190 40.609 197 109 3 4 193 18 213 2.65e-30 111
MS.gene00792.t1 AT5G48660 39.086 197 112 4 4 193 18 213 7.85e-30 110
MS.gene00792.t1 AT3G20450 43.089 123 62 3 1 119 19 137 3.93e-21 85.5

Find 47 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTCACATATTCTTCT+TGG 0.219887 2.1:-64839424 None:intergenic
TCCTACCGATCAGGTTCTTA+TGG 0.252341 2.1:+64837060 MS.gene00792:CDS
GTAGCTGGTTGCGGAGGTTT+TGG 0.307160 2.1:-64839368 None:intergenic
ATTGAGGAAGCTTGTAATAA+TGG 0.322813 2.1:+64836898 MS.gene00792:CDS
CTATCATAAGTGCAAGAAAA+AGG 0.327998 2.1:-64839066 None:intergenic
GGGGCTGAGGATGCGAAAGC+TGG 0.347270 2.1:+64839162 MS.gene00792:CDS
GAAGCTTGTAATAATGGCTT+TGG 0.364769 2.1:+64836904 MS.gene00792:CDS
CCATGCTCTTTCTCCGAATC+CGG 0.367578 2.1:-64839116 None:intergenic
TTATTACAAGCTTCCTCAAT+GGG 0.391866 2.1:-64836895 None:intergenic
AAGCCAGTGTAAGTGCTCTA+AGG 0.421670 2.1:+64839295 MS.gene00792:CDS
TTCTGTTAATCCTACCGATC+AGG 0.442382 2.1:+64837051 MS.gene00792:CDS
TACATAAGGAACTCCGGATT+CGG 0.444512 2.1:+64839103 MS.gene00792:CDS
ACGAGGTCGTGGACCTGTTA+TGG 0.464283 2.1:+64836937 MS.gene00792:CDS
TTCTGTCAACAGATTGTAGC+TGG 0.470135 2.1:-64839383 None:intergenic
ATTATTACAAGCTTCCTCAA+TGG 0.471169 2.1:-64836896 None:intergenic
GAGAGCAGAAGTTGATCGTC+TGG 0.490422 2.1:+64839230 MS.gene00792:CDS
CAACAGATTGTAGCTGGTTG+CGG 0.507849 2.1:-64839377 None:intergenic
GTTATGGTGAAAACCGTTGC+TGG 0.514910 2.1:+64836953 MS.gene00792:CDS
ACAGACTGCATCATTACATA+AGG 0.516437 2.1:+64839089 MS.gene00792:CDS
TTCAGATGAAACTAAAACAA+TGG 0.522908 2.1:+64839188 MS.gene00792:CDS
GATCGGTTGAAACGAGGTCG+TGG 0.523142 2.1:+64836926 MS.gene00792:CDS
ACTTCAGTCAAAAGATAAAG+AGG 0.526615 2.1:+64839260 MS.gene00792:CDS
TGAATATGATCGCTTACTTG+AGG 0.542275 2.1:+64839341 MS.gene00792:CDS
TTGTAATAATGGCTTTGGAT+CGG 0.542465 2.1:+64836909 MS.gene00792:CDS
AGCTGTTAAGAAACAAATGC+GGG 0.550293 2.1:+64839140 MS.gene00792:CDS
TCTTCTTGAAGCTACACTCA+TGG 0.550488 2.1:+64837090 MS.gene00792:CDS
CTTCTTGAAGCTACACTCAT+GGG 0.557141 2.1:+64837091 MS.gene00792:CDS
CAGATTGTAGCTGGTTGCGG+AGG 0.567147 2.1:-64839374 None:intergenic
CAACAACGTGGGATCGAACA+TGG 0.569692 2.1:+64837025 MS.gene00792:CDS
GCTCTAAGGAAACAATCTGA+AGG 0.569864 2.1:+64839309 MS.gene00792:CDS
GCCATAAGAACCTGATCGGT+AGG 0.586898 2.1:-64837061 None:intergenic
CTCTAAGGAAACAATCTGAA+GGG 0.587548 2.1:+64839310 MS.gene00792:CDS
CAGTCAAAAGATAAAGAGGT+AGG 0.596716 2.1:+64839264 MS.gene00792:CDS
CCGGATTCGGAGAAAGAGCA+TGG 0.597596 2.1:+64839116 MS.gene00792:CDS
CATCATTACATAAGGAACTC+CGG 0.601466 2.1:+64839097 MS.gene00792:CDS
GCTTTGGATCGGTTGAAACG+AGG 0.607033 2.1:+64836920 MS.gene00792:CDS
TTTCCTTAGAGCACTTACAC+TGG 0.609208 2.1:-64839298 None:intergenic
CTTAGCCATAAGAACCTGAT+CGG 0.613122 2.1:-64837065 None:intergenic
AACAAGAACAGTACCAGCAA+CGG 0.621936 2.1:-64836966 None:intergenic
CTGTTAAGAAACAAATGCGG+GGG 0.642686 2.1:+64839142 MS.gene00792:CDS
TGTTATTCAAGACCCCATTG+AGG 0.652558 2.1:+64836882 MS.gene00792:CDS
TGATGAAGATTCAACAACGT+GGG 0.655476 2.1:+64837014 MS.gene00792:CDS
GCTGTTAAGAAACAAATGCG+GGG 0.673517 2.1:+64839141 MS.gene00792:CDS
TATTACAAGCTTCCTCAATG+GGG 0.687342 2.1:-64836894 None:intergenic
AAGCTGTTAAGAAACAAATG+CGG 0.709469 2.1:+64839139 MS.gene00792:CDS
TGTTAAGAAACAAATGCGGG+GGG 0.715839 2.1:+64839143 MS.gene00792:CDS
ATGATGAAGATTCAACAACG+TGG 0.740230 2.1:+64837013 MS.gene00792:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG - chr2.1:64838028-64838047 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG - chr2.1:64838029-64838048 None:intergenic 10.0%
!! TTTAATAAGTCTAAATATTA+AGG - chr2.1:64838986-64839005 None:intergenic 10.0%
!! TATAGTATTAAACTTATTAG+TGG + chr2.1:64838109-64838128 MS.gene00792:intron 15.0%
!!! TTGAATTTGATTTATGTTTA+TGG + chr2.1:64837195-64837214 MS.gene00792:intron 15.0%
!!! TTTTACTAGTTGTATATAAT+TGG + chr2.1:64837977-64837996 MS.gene00792:intron 15.0%
!!! TTTTGTAAATATGATCAAAT+AGG + chr2.1:64837294-64837313 MS.gene00792:intron 15.0%
!! AATCATAAGATATATGCATA+TGG - chr2.1:64838346-64838365 None:intergenic 20.0%
!! ATTGTTTATTGATGAGTTAT+TGG + chr2.1:64838680-64838699 MS.gene00792:intron 20.0%
!! TTCTAAACCATTGAAAAAAT+CGG - chr2.1:64838574-64838593 None:intergenic 20.0%
!! TTGATTTATGTTTATGGATT+TGG + chr2.1:64837201-64837220 MS.gene00792:intron 20.0%
!!! AGTATTTCTTTTGAATAGTA+TGG + chr2.1:64838084-64838103 MS.gene00792:intron 20.0%
!!! ATGGGTATGTTTTTTTTAAA+TGG + chr2.1:64837109-64837128 MS.gene00792:intron 20.0%
!!! ATTTTGCTTATAATTAAGAC+TGG + chr2.1:64837338-64837357 MS.gene00792:intron 20.0%
!!! CTATATGATTTGCAATTTTT+AGG + chr2.1:64838735-64838754 MS.gene00792:intron 20.0%
!!! GTTATTGTTTTACTATTGAT+AGG - chr2.1:64837957-64837976 None:intergenic 20.0%
!!! TCTTTGATTTTTAATAAGAC+CGG + chr2.1:64838872-64838891 MS.gene00792:intron 20.0%
!!! TGGGTATGTTTTTTTTAAAT+GGG + chr2.1:64837110-64837129 MS.gene00792:intron 20.0%
! AAGTTTAACAACATACTAGA+TGG - chr2.1:64838784-64838803 None:intergenic 25.0%
! ACTACATTAATGAAAGGAAA+AGG - chr2.1:64837610-64837629 None:intergenic 25.0%
! AGATTGACTACATTAATGAA+AGG - chr2.1:64837616-64837635 None:intergenic 25.0%
! CTACATTAATGAAAGGAAAA+GGG - chr2.1:64837609-64837628 None:intergenic 25.0%
! TTATTAAAAGATATCCTCTG+TGG + chr2.1:64838998-64839017 MS.gene00792:intron 25.0%
! TTCAGATGAAACTAAAACAA+TGG + chr2.1:64839188-64839207 MS.gene00792:CDS 25.0%
! TTTGGAAATATGTTGAACTT+AGG - chr2.1:64838831-64838850 None:intergenic 25.0%
!! AATCATTGTGATTCTTTTTC+AGG - chr2.1:64838292-64838311 None:intergenic 25.0%
!! GAATGAATGAATTTTGTATG+AGG + chr2.1:64837170-64837189 MS.gene00792:intron 25.0%
!!! CAGCAATGTTTTGAAAAATT+TGG - chr2.1:64838849-64838868 None:intergenic 25.0%
!!! GAAGTTTTGAGTAATGTTTA+AGG + chr2.1:64838055-64838074 MS.gene00792:intron 25.0%
AAGCTGTTAAGAAACAAATG+CGG + chr2.1:64839139-64839158 MS.gene00792:CDS 30.0%
AAGTTGAAAAATGTGAGCTT+TGG + chr2.1:64838634-64838653 MS.gene00792:intron 30.0%
ACAATGATTCAGCATTCATA+AGG + chr2.1:64838303-64838322 MS.gene00792:intron 30.0%
ACTTCAGTCAAAAGATAAAG+AGG + chr2.1:64839260-64839279 MS.gene00792:CDS 30.0%
AGATCTTCTCAATTTCCAAA+AGG - chr2.1:64837543-64837562 None:intergenic 30.0%
ATTATTACAAGCTTCCTCAA+TGG - chr2.1:64836899-64836918 None:intergenic 30.0%
ATTCTTGGTCAATTATTTGC+AGG + chr2.1:64839037-64839056 MS.gene00792:intron 30.0%
ATTGAGGAAGCTTGTAATAA+TGG + chr2.1:64836898-64836917 MS.gene00792:CDS 30.0%
CAGTATTGTTTATGTTGGAT+TGG - chr2.1:64838941-64838960 None:intergenic 30.0%
CTATCATAAGTGCAAGAAAA+AGG - chr2.1:64839069-64839088 None:intergenic 30.0%
CTCAACAGTATTGTTTATGT+TGG - chr2.1:64838946-64838965 None:intergenic 30.0%
GAATAACCCAACAAAGAATT+AGG - chr2.1:64838524-64838543 None:intergenic 30.0%
GTTTATTGATGAGTTATTGG+TGG + chr2.1:64838683-64838702 MS.gene00792:intron 30.0%
TGCTTATAATTAAGACTGGA+CGG + chr2.1:64837342-64837361 MS.gene00792:intron 30.0%
TGTTTGCCTAATTCTTTGTT+GGG + chr2.1:64838515-64838534 MS.gene00792:intron 30.0%
TTAAAACAACATAGCTGAAG+AGG + chr2.1:64838902-64838921 MS.gene00792:intron 30.0%
TTATTACAAGCTTCCTCAAT+GGG - chr2.1:64836898-64836917 None:intergenic 30.0%
TTGTTTGCCTAATTCTTTGT+TGG + chr2.1:64838514-64838533 MS.gene00792:intron 30.0%
! ATGGTTTAGAATGAATGTTG+AGG + chr2.1:64838583-64838602 MS.gene00792:intron 30.0%
! TGATCAATCACAAAACCTTT+TGG + chr2.1:64837525-64837544 MS.gene00792:intron 30.0%
!! ACATTTGTAAGAGTGTTGTA+CGG + chr2.1:64837459-64837478 MS.gene00792:intron 30.0%
!! TTGTAATAATGGCTTTGGAT+CGG + chr2.1:64836909-64836928 MS.gene00792:CDS 30.0%
!!! ATGTTGTTTTAAGATGTGAC+CGG - chr2.1:64838894-64838913 None:intergenic 30.0%
!!! GATTCTTTTTCAGGAAAACA+CGG - chr2.1:64838283-64838302 None:intergenic 30.0%
!!! TTTGCTACCGATTTTTTCAA+TGG + chr2.1:64838564-64838583 MS.gene00792:intron 30.0%
AAGAACCATTCGAGAATTGA+AGG - chr2.1:64837750-64837769 None:intergenic 35.0%
ACAGACTGCATCATTACATA+AGG + chr2.1:64839089-64839108 MS.gene00792:CDS 35.0%
AGCTGTTAAGAAACAAATGC+GGG + chr2.1:64839140-64839159 MS.gene00792:CDS 35.0%
ATGATGAAGATTCAACAACG+TGG + chr2.1:64837013-64837032 MS.gene00792:CDS 35.0%
CAGTCAAAAGATAAAGAGGT+AGG + chr2.1:64839264-64839283 MS.gene00792:CDS 35.0%
CATCATTACATAAGGAACTC+CGG + chr2.1:64839097-64839116 MS.gene00792:CDS 35.0%
CTGTTGTCAATGCAGAAATA+CGG - chr2.1:64838170-64838189 None:intergenic 35.0%
GAAGCTTGTAATAATGGCTT+TGG + chr2.1:64836904-64836923 MS.gene00792:CDS 35.0%
GAGAATGTTCTACTTTCTTG+TGG + chr2.1:64838656-64838675 MS.gene00792:intron 35.0%
TATTACAAGCTTCCTCAATG+GGG - chr2.1:64836897-64836916 None:intergenic 35.0%
TGAACCCATTTCTGATCTTT+CGG + chr2.1:64837574-64837593 MS.gene00792:intron 35.0%
TGAATATGATCGCTTACTTG+AGG + chr2.1:64839341-64839360 MS.gene00792:CDS 35.0%
TGATGAAGATTCAACAACGT+GGG + chr2.1:64837014-64837033 MS.gene00792:CDS 35.0%
TTCAGCATTCATAAGGCATA+AGG + chr2.1:64838310-64838329 MS.gene00792:intron 35.0%
TTGCGAGCATTATTCATTCT+TGG + chr2.1:64839022-64839041 MS.gene00792:intron 35.0%
! CTCTAAGGAAACAATCTGAA+GGG + chr2.1:64839310-64839329 MS.gene00792:CDS 35.0%
! GTCATATCTAGTTTCCGTAT+CGG - chr2.1:64837389-64837408 None:intergenic 35.0%
!!! TGGTATTTTAGCCTCCTAAT+GGG + chr2.1:64838416-64838435 MS.gene00792:intron 35.0%
!!! TTGGTATTTTAGCCTCCTAA+TGG + chr2.1:64838415-64838434 MS.gene00792:intron 35.0%
AACAAGAACAGTACCAGCAA+CGG - chr2.1:64836969-64836988 None:intergenic 40.0%
AATACACGTTCACGAGGTAT+AGG - chr2.1:64838256-64838275 None:intergenic 40.0%
AATCATATGAGCCCATTAGG+AGG - chr2.1:64838430-64838449 None:intergenic 40.0%
AATTAGGCAAACAACCAACG+AGG - chr2.1:64838508-64838527 None:intergenic 40.0%
CTGAATCATATGAGCCCATT+AGG - chr2.1:64838433-64838452 None:intergenic 40.0%
CTGTTAAGAAACAAATGCGG+GGG + chr2.1:64839142-64839161 MS.gene00792:CDS 40.0%
CTTAGCCATAAGAACCTGAT+CGG - chr2.1:64837068-64837087 None:intergenic 40.0%
CTTCTTGAAGCTACACTCAT+GGG + chr2.1:64837091-64837110 MS.gene00792:CDS 40.0%
GACTCCGAAAGATCAGAAAT+GGG - chr2.1:64837581-64837600 None:intergenic 40.0%
GCTAAAATACCAAGAGTGAC+CGG - chr2.1:64838408-64838427 None:intergenic 40.0%
GCTGTTAAGAAACAAATGCG+GGG + chr2.1:64839141-64839160 MS.gene00792:CDS 40.0%
GTTGTACGGATGTAATACAC+CGG + chr2.1:64837473-64837492 MS.gene00792:intron 40.0%
TACATAAGGAACTCCGGATT+CGG + chr2.1:64839103-64839122 MS.gene00792:CDS 40.0%
TCTTCTTGAAGCTACACTCA+TGG + chr2.1:64837090-64837109 MS.gene00792:CDS 40.0%
TGACTCCGAAAGATCAGAAA+TGG - chr2.1:64837582-64837601 None:intergenic 40.0%
TGTTAAGAAACAAATGCGGG+GGG + chr2.1:64839143-64839162 MS.gene00792:CDS 40.0%
TGTTATTCAAGACCCCATTG+AGG + chr2.1:64836882-64836901 MS.gene00792:CDS 40.0%
TTCTGTCAACAGATTGTAGC+TGG - chr2.1:64839386-64839405 None:intergenic 40.0%
TTCTGTTAATCCTACCGATC+AGG + chr2.1:64837051-64837070 MS.gene00792:CDS 40.0%
! AGTTATTGGTGGCATTAGCA+GGG + chr2.1:64838694-64838713 MS.gene00792:intron 40.0%
! TTTCCTTAGAGCACTTACAC+TGG - chr2.1:64839301-64839320 None:intergenic 40.0%
!! GCTCTAAGGAAACAATCTGA+AGG + chr2.1:64839309-64839328 MS.gene00792:CDS 40.0%
AAGCCAGTGTAAGTGCTCTA+AGG + chr2.1:64839295-64839314 MS.gene00792:CDS 45.0%
AGAGGCTTTACCCTGTCAAA+CGG + chr2.1:64837805-64837824 MS.gene00792:intron 45.0%
CAACAGATTGTAGCTGGTTG+CGG - chr2.1:64839380-64839399 None:intergenic 45.0%
CGGAGCATAGCAGAAAAATC+AGG + chr2.1:64837876-64837895 MS.gene00792:intron 45.0%
CTGTCCTCTGTTGTCAAAAG+CGG + chr2.1:64837835-64837854 MS.gene00792:intron 45.0%
GTCAATGCAGAAATACGGTG+TGG - chr2.1:64838165-64838184 None:intergenic 45.0%
GTTATGGTGAAAACCGTTGC+TGG + chr2.1:64836953-64836972 MS.gene00792:CDS 45.0%
TCCTACCGATCAGGTTCTTA+TGG + chr2.1:64837060-64837079 MS.gene00792:CDS 45.0%
TCTAGAAGCTGAACCTAGAC+AGG - chr2.1:64838197-64838216 None:intergenic 45.0%
TCTTGAGTTTACTGTGCCTC+TGG + chr2.1:64837766-64837785 MS.gene00792:intron 45.0%
TGTAATACACCGGTGTGTGT+TGG + chr2.1:64837483-64837502 MS.gene00792:intron 45.0%
TTTGACAGGGTAAAGCCTCT+CGG - chr2.1:64837805-64837824 None:intergenic 45.0%
! GAGTTATTGGTGGCATTAGC+AGG + chr2.1:64838693-64838712 MS.gene00792:intron 45.0%
! GCAACGGTTTTCACCATAAC+AGG - chr2.1:64836953-64836972 None:intergenic 45.0%
! TCTAGTTTCCGTATCGGATC+CGG - chr2.1:64837383-64837402 None:intergenic 45.0%
! TTTTGACAACAGAGGACAGG+AGG - chr2.1:64837834-64837853 None:intergenic 45.0%
AAATACGGTGTGGCGCATAG+CGG - chr2.1:64838155-64838174 None:intergenic 50.0%
ACTTGTGAGTGAAGCCTCGT+TGG + chr2.1:64838491-64838510 MS.gene00792:intron 50.0%
AGAAGTGGAAAGCGGCAAAG+CGG + chr2.1:64837930-64837949 MS.gene00792:intron 50.0%
AGAGAAAGAGCCTTCACCCT+TGG + chr2.1:64838377-64838396 MS.gene00792:intron 50.0%
ATAATGCTCGCAAGCCACAG+AGG - chr2.1:64839015-64839034 None:intergenic 50.0%
CAACAACGTGGGATCGAACA+TGG + chr2.1:64837025-64837044 MS.gene00792:CDS 50.0%
CCATGCTCTTTCTCCGAATC+CGG - chr2.1:64839119-64839138 None:intergenic 50.0%
CGGGTATCAGAAGTGGAAAG+CGG + chr2.1:64837922-64837941 MS.gene00792:intron 50.0%
GAGAAAGAGCCTTCACCCTT+GGG + chr2.1:64838378-64838397 MS.gene00792:intron 50.0%
GAGGCTTTACCCTGTCAAAC+GGG + chr2.1:64837806-64837825 MS.gene00792:intron 50.0%
GCCATAAGAACCTGATCGGT+AGG - chr2.1:64837064-64837083 None:intergenic 50.0%
GGCTGCCTTCAATTCTCGAA+TGG + chr2.1:64837742-64837761 MS.gene00792:intron 50.0%
GGTTCGAATACACGTTCACG+AGG - chr2.1:64838262-64838281 None:intergenic 50.0%
TCTGCTATGCTCCGCTATAG+CGG - chr2.1:64837870-64837889 None:intergenic 50.0%
TGACAACAGAGCTCCTGTCT+AGG + chr2.1:64838181-64838200 MS.gene00792:intron 50.0%
TGACACTGACACAGACACGT+TGG + chr2.1:64837405-64837424 MS.gene00792:intron 50.0%
TTGCTGCATCTGATGCAGCA+TGG + chr2.1:64837721-64837740 MS.gene00792:intron 50.0%
TTGGGTAAACCGGTCACTCT+TGG + chr2.1:64838396-64838415 MS.gene00792:intron 50.0%
! AAGAGTGACCGGTTTACCCA+AGG - chr2.1:64838397-64838416 None:intergenic 50.0%
! ACGGAGTATCTGTCAAGCAC+CGG + chr2.1:64837361-64837380 MS.gene00792:intron 50.0%
! AGAGTGACCGGTTTACCCAA+GGG - chr2.1:64838396-64838415 None:intergenic 50.0%
! CGCTTTTGACAACAGAGGAC+AGG - chr2.1:64837837-64837856 None:intergenic 50.0%
! GAGAGCAGAAGTTGATCGTC+TGG + chr2.1:64839230-64839249 MS.gene00792:CDS 50.0%
! GCTTTGGATCGGTTGAAACG+AGG + chr2.1:64836920-64836939 MS.gene00792:CDS 50.0%
AAAATCAGGACCACTGCGCC+AGG + chr2.1:64837890-64837909 MS.gene00792:intron 55.0%
AATACGGTGTGGCGCATAGC+GGG - chr2.1:64838154-64838173 None:intergenic 55.0%
ACGAGGTCGTGGACCTGTTA+TGG + chr2.1:64836937-64836956 MS.gene00792:CDS 55.0%
AGGGTAAAGCCTCTCGGACT+GGG - chr2.1:64837799-64837818 None:intergenic 55.0%
CAGATTGTAGCTGGTTGCGG+AGG - chr2.1:64839377-64839396 None:intergenic 55.0%
CCGGATTCGGAGAAAGAGCA+TGG + chr2.1:64839116-64839135 MS.gene00792:CDS 55.0%
CGTTCACGAGGTATAGGCAC+TGG - chr2.1:64838250-64838269 None:intergenic 55.0%
GATCGGTTGAAACGAGGTCG+TGG + chr2.1:64836926-64836945 MS.gene00792:CDS 55.0%
GCCTTCACCCTTGGGTAAAC+CGG + chr2.1:64838386-64838405 MS.gene00792:intron 55.0%
TCTCCGTGACCAACACACAC+CGG - chr2.1:64837495-64837514 None:intergenic 55.0%
! ACACCGGTGTGTGTTGGTCA+CGG + chr2.1:64837489-64837508 MS.gene00792:intron 55.0%
! ACCGGTTTACCCAAGGGTGA+AGG - chr2.1:64838390-64838409 None:intergenic 55.0%
! GTAGCTGGTTGCGGAGGTTT+TGG - chr2.1:64839371-64839390 None:intergenic 55.0%
!! ACTGGAAGAGGTGCCAACAG+GGG - chr2.1:64838232-64838251 None:intergenic 55.0%
!! CACTGGAAGAGGTGCCAACA+GGG - chr2.1:64838233-64838252 None:intergenic 55.0%
!! CGAGGTATAGGCACTGGAAG+AGG - chr2.1:64838244-64838263 None:intergenic 55.0%
!! GTCAAGCACCGGATCCGATA+CGG + chr2.1:64837372-64837391 MS.gene00792:intron 55.0%
ACAGGAGGAGCCCGTTTGAC+AGG - chr2.1:64837819-64837838 None:intergenic 60.0%
ACCTCTCTCAGCTCCCCTGT+TGG + chr2.1:64838216-64838235 MS.gene00792:intron 60.0%
ACTTCTGATACCCGCCGACG+CGG - chr2.1:64837916-64837935 None:intergenic 60.0%
CAGGAGGAGCCCGTTTGACA+GGG - chr2.1:64837818-64837837 None:intergenic 60.0%
CAGGGTAAAGCCTCTCGGAC+TGG - chr2.1:64837800-64837819 None:intergenic 60.0%
CTATGCTCCGCTATAGCGGC+CGG - chr2.1:64837866-64837885 None:intergenic 60.0%
GAAACAAATGCGGGGGGCTG+AGG + chr2.1:64839149-64839168 MS.gene00792:CDS 60.0%
GGGTAAAGCCTCTCGGACTG+GGG - chr2.1:64837798-64837817 None:intergenic 60.0%
GTTGTCAAAAGCGGCCGCAC+CGG + chr2.1:64837844-64837863 MS.gene00792:intron 60.0%
!! CATAGCGGGCGCTATTTCGG+TGG - chr2.1:64838140-64838159 None:intergenic 60.0%
!! GCACTGGAAGAGGTGCCAAC+AGG - chr2.1:64838234-64838253 None:intergenic 60.0%
!! GCGCATAGCGGGCGCTATTT+CGG - chr2.1:64838143-64838162 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG - chr2.1:64837842-64837861 None:intergenic 60.0%
GCCAACAGGGGAGCTGAGAG+AGG - chr2.1:64838220-64838239 None:intergenic 65.0%
GGCTCTTTCCCCAGTCCGAG+AGG + chr2.1:64837787-64837806 MS.gene00792:intron 65.0%
GGGGCTGAGGATGCGAAAGC+TGG + chr2.1:64839162-64839181 MS.gene00792:CDS 65.0%
! CGGACTGGGGAAAGAGCCAG+AGG - chr2.1:64837785-64837804 None:intergenic 65.0%
! GCGTCGGCGGGTATCAGAAG+TGG + chr2.1:64837915-64837934 MS.gene00792:intron 65.0%
CTCCGCTATAGCGGCCGGTG+CGG - chr2.1:64837861-64837880 None:intergenic 70.0%
ACCACTGCGCCAGGCCGCGT+CGG + chr2.1:64837899-64837918 MS.gene00792:intron 75.0%
TGATACCCGCCGACGCGGCC+TGG - chr2.1:64837911-64837930 None:intergenic 75.0%
! GGCCGCACCGGCCGCTATAG+CGG + chr2.1:64837856-64837875 MS.gene00792:intron 75.0%
! ACTGCGCCAGGCCGCGTCGG+CGG + chr2.1:64837902-64837921 MS.gene00792:intron 80.0%
! GCCGACGCGGCCTGGCGCAG+TGG - chr2.1:64837903-64837922 None:intergenic 85.0%
!! CTGCGCCAGGCCGCGTCGGC+GGG + chr2.1:64837903-64837922 MS.gene00792:intron 85.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 64836869 64839440 64836869 ID=MS.gene00792
chr2.1 mRNA 64836869 64839440 64836869 ID=MS.gene00792.t1;Parent=MS.gene00792
chr2.1 exon 64836869 64837116 64836869 ID=MS.gene00792.t1.exon1;Parent=MS.gene00792.t1
chr2.1 CDS 64836869 64837116 64836869 ID=cds.MS.gene00792.t1;Parent=MS.gene00792.t1
chr2.1 exon 64839059 64839440 64839059 ID=MS.gene00792.t1.exon2;Parent=MS.gene00792.t1
chr2.1 CDS 64839059 64839440 64839059 ID=cds.MS.gene00792.t1;Parent=MS.gene00792.t1
Gene Sequence

>MS.gene00792

ATGATCGCATTGCTGTTATTCAAGACCCCATTGAGGAAGCTTGTAATAATGGCTTTGGATCGGTTGAAACGAGGTCGTGGACCTGTTATGGTGAAAACCGTTGCTGGTACTGTTCTTGTTGTTTTGTCTTCTAGTGTTTATAGTATGATGAAGATTCAACAACGTGGGATCGAACATGGTGCTTCTGTTAATCCTACCGATCAGGTTCTTATGGCTAAGCATCTTCTTGAAGCTACACTCATGGGTATGTTTTTTTTAAATGGGTTGTTGAAAAGTTTTGATTTTTGTTTATTTGCTTGATGAATGAATGAATTTTGTATGAGGAATTGAATTTGATTTATGTTTATGGATTTGGATTTAATGTGATTGCTCTGTTATGTGTAATTGTTTGCATTATTAATTTATTGAGTTTTTAGCATTATTATTTTTGTAAATATGATCAAATAGGTACATTTTTGTAATGTGTATAATTTTGCTTATAATTAAGACTGGACGGAGTATCTGTCAAGCACCGGATCCGATACGGAAACTAGATATGACACTGACACAGACACGTTGGAACAAAGAACGTTTTGTATGAGTTGTGAGATACATTTGTAAGAGTGTTGTACGGATGTAATACACCGGTGTGTGTTGGTCACGGAGATATGAATATATGATCAATCACAAAACCTTTTGGAAATTGAGAAGATCTTCTCGAATTCATGAACCCATTTCTGATCTTTCGGAGTCATGTTCCCTTTTCCTTTCATTAATGTAGTCAATCTTGCATTGTGATGAATATGTTGTCTCTGTTGTTGCTGATGCAATTGATGAGTGATGATCTCTAGTGATCTAAAAGATTTGTTTGTTTTGCTGCATCTGATGCAGCATGGCTGCCTTCAATTCTCGAATGGTTCTTGAGTTTACTGTGCCTCTGGCTCTTTCCCCAGTCCGAGAGGCTTTACCCTGTCAAACGGGCTCCTCCTGTCCTCTGTTGTCAAAAGCGGCCGCACCGGCCGCTATAGCGGAGCATAGCAGAAAAATCAGGACCACTGCGCCAGGCCGCGTCGGCGGGTATCAGAAGTGGAAAGCGGCAAAGCGGACCTATCAATAGTAAAACAATAACTTTTACTAGTTGTATATAATTGGTATTAGCGATTTTCAATTTTGCTATCCCTTTTATTTCATATTATGAATACTTCATGAAGTTTTGAGTAATGTTTAAGGTATTTTAGTATTTCTTTTGAATAGTATGGTATATAGTATTAAACTTATTAGTGGCTGCACCACCGAAATAGCGCCCGCTATGCGCCACACCGTATTTCTGCATTGACAACAGAGCTCCTGTCTAGGTTCAGCTTCTAGACCTCTCTCAGCTCCCCTGTTGGCACCTCTTCCAGTGCCTATACCTCGTGAACGTGTATTCGAACCGTGTTTTCCTGAAAAAGAATCACAATGATTCAGCATTCATAAGGCATAAGGATCATATAAACCATATGCATATATCTTATGATTGATTTAGTTAAAGAGAAAGAGCCTTCACCCTTGGGTAAACCGGTCACTCTTGGTATTTTAGCCTCCTAATGGGCTCATATGATTCAGACGCTCAACACTCATATAACTGAAGCTTCTAACTTGTAACTTGTGAGTGAAGCCTCGTTGGTTGTTTGCCTAATTCTTTGTTGGGTTATTCTGTAAATATTTGTGTTTCTTTTTGCTACCGATTTTTTCAATGGTTTAGAATGAATGTTGAGGCAACTTACATGAGATATGTGATCTTCTAAAGTTGAAAAATGTGAGCTTTGGAGAATGTTCTACTTTCTTGTGGTATTGTTTATTGATGAGTTATTGGTGGCATTAGCAGGGAGATTGAAATCAGATGTACTATATGATTTGCAATTTTTAGGATTCTCTCTCTCACAACTAGAAGCCATCTAGTATGTTGTTAAACTTTACAACTCAGATTGTATGTAATTTCCTAAGTTCAACATATTTCCAAATTTTTCAAAACATTGCTGTGTTCTTTGATTTTTAATAAGACCGGTCACATCTTAAAACAACATAGCTGAAGAGGTAAAGTTACAATTCCAATCCAACATAAACAATACTGTTGAGTTTCTGAACTGATTGTTCCTTAATATTTAGACTTATTAAAAGATATCCTCTGTGGCTTGCGAGCATTATTCATTCTTGGTCAATTATTTGCAGGTGCTATCCTTTTTCTTGCACTTATGATAGACAGACTGCATCATTACATAAGGAACTCCGGATTCGGAGAAAGAGCATGGAAGCTGTTAAGAAACAAATGCGGGGGGCTGAGGATGCGAAAGCTGGAACTTCAGATGAAACTAAAACAATGGAGCAAGAAGCAGCTAAGTTGAGAGCAGAAGTTGATCGTCTGGAATCTGAACTTCAGTCAAAAGATAAAGAGGTAGGTGCTGCAGAAGCCAGTGTAAGTGCTCTAAGGAAACAATCTGAAGGGTTTCTTCTTGAATATGATCGCTTACTTGAGGAGAACCAAAACCTCCGCAACCAGCTACAATCTGTTGACAGAAGATTCTCACATTCAGTTTCCAAGAAGAATATGTGA
Protein sequence

>MS.gene00792.t1

MIALLLFKTPLRKLVIMALDRLKRGRGPVMVKTVAGTVLVVLSSSVYSMMKIQQRGIEHGASVNPTDQVLMAKHLLEATLMGMCYPFSCTYDRQTASLHKELRIRRKSMEAVKKQMRGAEDAKAGTSDETKTMEQEAAKLRAEVDRLESELQSKDKEVGAAEASVSALRKQSEGFLLEYDRLLEENQNLRNQLQSVDRRFSHSVSKKNM